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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, tryptophan synthesis

Akers JC, Tan M. Molecular mechanism of tryptophan-dependent transcriptional regulation in Chlamydia trachomatis. J. Bacteriol. 188: 4236-4243 (2006).

Akowski JP, Bauerle R. Steady-state kinetics and inhibitor binding of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (tryptophan sensitive) from Escherichia coli. Biochemistry 36: 15817-15822 (1997).

Ambikapathy J, Marshall JS, Hocart CH, Hardham AR. The role of proline in osmoregulation in Phytophthora nicotianae. Fungal Genet. Biol. 35: 287-299 (2002).

Anjaiah V, Koedam N, Nowak-Thompson B, Loper JE, Hofte M, Tambong JT, Cornelis P. Involvement of phenazines and anthranilate in the antagonism of Pseudomonas aeruginosa PNA1 and Tn5 derivatives toward Fusarium spp. and Pythium spp. Mol. Plant Microbe Interact. 11: 847-854 (1998).

Bahar I, Jernigan RL. Cooperative fluctuations and subunit communication in tryptophan synthase. Biochemistry 38: 3478-3490 (1999).

Bak S, Feyereisen R. The involvement of two P450 enzymes, CYP83B1 and CYP83A1, in auxin homeostasis and glucosinolate biosynthesis. Plant Physiol. 127: 108-118 (2001).

Baker DH. Comparative nutrition and metabolism: explication of open questions with emphasis on protein and amino acids. Proc. Natl. Acad. Sci. U.S.A. 102: 17897-1902 (2005).

Balderas-Hernandez VE, Sabido-Ramos A, Silva P, Cabrera-Valladares N, Hernandez-Chavez G, Baez-Viveros JL, Martinez A, Bolívar F, Gosset G. Metabolic engineering for improving anthranilate synthesis from glucose in Escherichia coli. Microb. Cell Fact. 8: 19 (2009).

Barczak AJ, Zhao J, Pruitt KD, Last RL. 5-Fluoroindole resistance identifies tryptophan synthase beta subunit mutants in Arabidopsis thaliana. Genetics 140: 303-313 (1995).

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Bernasconi P, Walters EW, Woodworth AR, Siehl DL, Stone TE, Subramanian MV. Functional expression of Arabidopsis thaliana anthranilate synthase subunit I in Escherichia coli. Plant Physiol. 106: 353-358 (1994).

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Braus GH. Aromatic amino acid biosynthesis in the yeast Saccharomyces cerevisiae: a model system for the regulation of a eukaryotic biosynthetic pathway. Microbiol. Rev. 55: 349-370 (1991).

Brzovic PS, Kayastha AM, Miles EW, Dunn MF. Substitution of glutamic acid 109 by aspartic acid alters the substrate specificity and catalytic activity of the beta-subunit in the tryptophan synthase bienzyme complex from Salmonella typhimurium. Biochemistry 31: 1180-1190 (1992).

Buvinger WE, Stone LC, Heath HE. Biochemical genetics of tryptophan synthesis in Pseudomonas acidovorans. J. Bacteriol. 147: 62-68 (1981).

Byrne KM, Smith SK, Ondeyka JG. Biosynthesis of nodulisporic acid A: Precursor studies. J. Am. Chem. Soc. 124: 7055-7060 (2002).

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Canel C, Lopes-Cardoso MI, Whitmer S, van der Fits L, Pasquali G, van der Heijden R, Hoge JH, Verpoorte R. Effects of over-expression of strictosidine synthase and tryptophan decarboxylase on alkaloid production by cell cultures of Catharanthus roseus. Planta 205: 414-419 (1998).

Cash MT, Miles EW, Phillips RS. The reaction of indole with the aminoacrylate intermediate of Salmonella typhimurium tryptophan synthase: observation of a primary kinetic isotope effect with 3-[(2)H]indole. Arch. Biochem. Biophys. 432: 233-243 (2004).

Casino P, Niks D, Ngo H, Pan P, Brzovic P, Blumenstein L, Barends TR, Schlichting I, Dunn MF. Allosteric regulation of tryptophan synthase channeling: the internal aldimine probed by trans-3-indole-3'-acrylate binding. Biochemistry 46: 7728-7739 (2007).

Celenza JL. Metabolism of tyrosine and tryptophan - new genes for old pathways. Curr. Opin. Plant Biol. 4: 234-240 (2001).

Celenza JL, Quiel JA, Smolen GA, Merrikh H, Silvestro AR, Normanly J, Bender J. The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis. Plant Physiol. 137: 253-262 (2005).

Chen G, Yanofsky C. Tandem transcription and translation regulatory sensing of uncharged tryptophan tRNA. Science 301: 211-213 (2003).

Chen H, Xiong L. The short-rooted vitamin B6-deficient mutant pdx1 has impaired local auxin biosynthesis. Planta 229: 1303-1310 (2009).

Cho HJ, Brotherton JE, Song HS, Widholm JM. Increasing tryptophan synthesis in a forage legume Astragalus sinicus by expressing the tobacco feedback-insensitive anthranilate synthase (ASA2) gene. Plant Physiol. 123: 1069-1076 (2000).

Chong CK, Shin HJ, Chang SI, Choi JD. Role of tryptophanyl residues in tobacco acetolactate synthase. Biochem. Biophys. Res. Commun. 259: 136-140 (1999).

Chung IM, Hong SB, Peebles CA, Kim JA, San KY. Effect of the engineered indole pathway on accumulation of phenolic compounds in Catharanthus roseus hairy roots. Biotechnol. Prog. 23: 327-332 (2007).

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Darimont B, Stehlin C, Szadkowski H, Kirschner K. Mutational analysis of the active site of indoleglycerol phosphate synthase from Escherichia coli. Protein Sci. 7: 1221-1232 (1998).

De Luca V. Chapter 9. Metabolic Engineering of Crops with the Tryptophan Decarboxylase of Catharanthus roseus. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 179-194 (2000).

De Luca V, Laflamme P. The expanding universe of alkaloid biosynthesis. Curr. Opin. Plant Biol. 4: 225-233 (2001).

Diksic M. Labelled alpha-methyl-L-tryptophan as a tracer for the study of the brain serotonergic system. J. Psychiatry Neurosci. 26: 293-303 (2001).

Diksic M, Young SN. Study of the brain serotonergic system with labeled alpha-methyl-L-tryptophan. J. Neurochem. 78: 1185-1200 (2001).

Ditengou FA, Lapeyrie F. Hypaphorine from the ectomycorrhizal fungus Pisolithus tinctorius counteracts activities of indole-3-acetic acid and ethylene but not synthetic auxins in eucalypt seedlings. Mol. Plant Microbe Interact. 13: 151-158 (2000).

Dosselaere F, Lambrecht M, Vanderleyden J. Isolation and sequence analysis of the trpBA gene cluster, encoding tryptophan synthase, from Azospirillum brasilense. DNA Seq. 11: 287-293 (2000).

Dunn MF, Aguilar V, Brzovic P, Drewe WF Jr, Houben KF, Leja CA, Roy M. The tryptophan synthase bienzyme complex transfers indole between the alpha- and beta-sites via a 25-30 A long tunnel. Biochemistry 29: 8598-8607 (1990).

Dunn MF, Niks D, Ngo H, Barends TR, Schlichting I. Tryptophan synthase: the workings of a channeling nanomachine. Trends Biochem. Sci. 33: 254-264 (2008).

Dutcher SK, Galloway RE, Barclay WR, Poortinga G. Tryptophan analog resistance mutations in Chlamydomonas reinhardtii. Genetics 131: 593-607 (1992).

Eaves DJ, Palmer T, Boxer DH. The product of the molybdenum cofactor gene mobB of Escherichia coli is a GTP-binding protein. Eur. J. Biochem. 246: 690-697 (1997).

Eberhard J, Ehrler TT, Epple P, Felix G, Raesecke HR, Amrhein N, Schmid J. Cytosolic and plastidic chorismate mutase isozymes from Arabidopsis thaliana: molecular characterization and enzymatic properties. Plant J. 10: 815-821 (1996).

Ehlert B, Schottler MA, Tischendorf G, Ludwig-Muller J, Bock R. The paramutated SULFUREA locus of tomato is involved in auxin biosynthesis. J. Exp. Bot. 59: 3635-3647 (2008).

Essar DW, Eberly L, Hadero A, Crawford IP. Identification and characterization of genes for a second anthranilate synthase in Pseudomonas aeruginosa: interchangeability of the two anthranilate synthases and evolutionary implications. J. Bacteriol. 172: 884-900 (1990).

Essar DW, Eberly L, Han CY, Crawford IP. DNA sequences and characterization of four early genes of the tryptophan pathway in Pseudomonas aeruginosa. J. Bacteriol. 172: 853-866 (1990).

Facchini PJ, DiCosmo F. Secondary metabolite biosynthesis in cultured cells of Catharanthus roseus (L.) G. Don immobilized by adhesion to glass fibres. Appl. Microbiol. Biotechnol. 35: 382-392 (1991).

Facchini PJ, Huber-Allanach KL, Tari LW. Plant aromatic L-amino acid decarboxylases: evolution, biochemistry, regulation, and metabolic engineering applications. Phytochemistry 54: 121-138 (2000).

Fantes PA, Roberts LM, Huetter R. Free tryptophan pool and tryptophan biosynthetic enzymes in Saccharomyces cerevisiae. Arch. Microbiol. 107: 207-214 (1976).

Farrow JM 3rd, Pesci EC. Two distinct pathways supply anthranilate as a precursor of the Pseudomonas quinolone signal. J. Bacteriol. 189: 3425-3433 (2007).

Fiske MJ, Kane JF. Regulation of phenylalanine biosynthesis in Rhodotorula glutinis. J. Bacteriol. 160: 676-681 (1984).

Forlani G, Lejczak B, Kafarski P. The herbicidally active compound N-2-(5-chloro-pyridyl) aminomethylene bisphosphonic acid acts by inhibiting both glutamine and aromatic amino acid biosynthesis. Aust. J. Plant Physiol. 27: 677-683 (2000).

Forlani G, Lejczak B, Kafarski P. The herbicidally active compound N-2-(6-methyl-pyridyl)- aminomethylene bisphosphonic acid inhibits in vivo aromatic biosynthesis. J. Plant Growth Regul. 18: 73-79 (1999).

Frank W, Baar KM, Qudeimat E, Woriedh M, Alawady A, Ratnadewi D, Gremillon L, Grimm B, Reski R. A mitochondrial protein homologous to the mammalian peripheral-type benzodiazepine receptor is essential for stress adaptation in plants. Plant J. 51: 1004-1018 (2007).

Galili S, Guenoune D, Wininger S, Hana B, Schupper A, Ben-Dor B, Kapulnik Y. Enhanced levels of free and protein-bound threonine in transgenic alfalfa (Medicago sativa L.) expressing a bacterial feedback-insensitive aspartate kinase gene. Transgenic Res. 9: 137-144 (2000).

Gast DA, Jenal U, Wasserfallen A, Leisinger T. Regulation of tryptophan biosynthesis in Methanobacterium thermoautotrophicum Marburg. J. Bacteriol. 176: 4590-4596 (1994).

Gast DA, Wasserfallen A, Pfister P, Ragettli S, Leisinger T. Characterization of Methanobacterium thermoautotrophicum Marburg mutants defective in regulation of L-tryptophan biosynthesis. J. Bacteriol. 179: 3664-3669 (1997).

Ge SM, Xie BE, Chen SF. Characterization of two trpE genes encoding anthranilate synthase alpha-subunit in Azospirillum brasilense. Biochem. Biophys. Res. Commun. 341: 494-499 (2006).

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Goddijn OJ, de Kam RJ, Zanetti A, Schilperoort RA, Hoge JH. Auxin rapidly down-regulates transcription of the tryptophan decarboxylase gene from Catharanthus roseus. Plant Mol. Biol. 18: 1113-1120 (1992).

Goddijn OJ, Lohman FP, de Kam RJ, Schilperoort RA, Hoge JH. Nucleotide sequence of the tryptophan decarboxylase gene of Catharanthus roseus and expression of tdc-gusA gene fusions in Nicotiana tabacum. Mol. Gen. Genet. 242: 217-225 (1994).

Goddijn OJ, Pennings EJ, van der Helm P, Schilperoort RA, Verpoorte R, Hoge JH. Overexpression of a tryptophan decarboxylase cDNA in Catharanthus roseus crown gall calluses results in increased tryptamine levels but not in increased terpenoid indole alkaloid production. Transgenic Res. 4: 315-323 (1995).

Gorlach J, Raesecke HR, Rentsch D, Regenass M, Roy P, Zala M, Keel C, Boller T, Amrhein N, Schmid J. Temporally distinct accumulation of transcripts encoding enzymes of the prechorismate pathway in elicitor-treated, cultured tomato cells. Proc. Natl. Acad. Sci. U.S.A. 92: 3166-3170 (1995).

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Guillet G, De Luca V. Wound-inducible biosynthesis of phytoalexin hydroxycinnamic acid amides of tyramine in tryptophan and tyrosine decarboxylase transgenic tobacco lines. Plant Physiol. 137: 692-699 (2005).

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