Abanda-Nkpwatt D, Musch M, Tschiersch J, Boettner M, Schwab W. Molecular interaction between Methylobacterium extorquens and seedlings: growth promotion, methanol consumption, and localization of the methanol emission site. J. Exp. Bot. 57: 4025-4032 (2006).

Abdeen A, Virgos A, Olivella E, Villanueva J, Aviles X, Gabarra R, Prat S. Multiple insect resistance in transgenic tomato plants over-expressing two families of plant proteinase inhibitors. Plant Mol. Biol. 57: 189-202 (2005).

Abel S, Nurnberger T, Ahnert V, Krauss GJ, Glund K. Induction of an extracellular cyclic nucleotide phosphodiesterase as an accessory ribonucleolytic activity during phosphate starvation of cultured tomato cells. Plant Physiol. 122: 543-552 (2000).

Abuqamar S, Chai MF, Luo H, Song F, Mengiste T. Tomato protein kinase 1b mediates signaling of plant responses to necrotrophic fungi and insect herbivory. Plant Cell 20: 1964-1983 (2008).

Abuqamar S, Luo H, Laluk K, Mickelbart MV, Mengiste T. Crosstalk between biotic and abiotic stress responses in tomato is mediated by the AIM1 transcription factor. Plant J. 58: 347-360 (2009).

Adams-Phillips L, Barry C, Giovannoni J. Signal transduction systems regulating fruit ripening. Trends Plant Sci. 9: 331-338 (2004).

Adams-Phillips L, Barry C, Kannan P, Leclercq J, Bouzayen M, Giovannoni J. Evidence that CTR1-mediated ethylene signal transduction in tomato is encoded by a multigene family whose members display distinct regulatory features. Plant Mol. Biol. 54: 387-404 (2004).

Adnan S, Susan L, Weiss D. Isolation and characterization of a heat-induced gene, hcit2, encoding a novel 16.5 kDa protein: expression coincides with heat-induced tolerance to chilling stress. Plant Mol. Biol. 36: 935-939 (1998).

Agius F, Amaya I, Botella MA, Valpuesta V. Functional analysis of homologous and heterologous promoters in strawberry fruits using transient expression. J. Exp. Bot. 56: 37-46 (2005).

Agrawal GK, Yonekura M, Iwahashi Y, Iwahashi H, Rakwal R. System, trends and perspectives of proteomics in dicot plants. Part III: Unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationships. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci. 815: 137-145 (2005).

Agren GI, Franklin O. Root : shoot ratios, optimization and nitrogen productivity. Ann. Bot. (Lond.) 92: 795-800 (2003).

Ahmed A, Crawford T, Gould S, Ha YS, Hollrah M, Noor-E-Ain F, Dickman MB, Dussault PH. Synthesis of (R)- and (S)-10,16-dihydroxyhexadecanoic acid: cutin stereochemistry and fungal activation. Phytochemistry 63: 47-52 (2003).

Akhtar TA, McQuinn RP, Naponelli V, Gregory JF 3rd, Giovannoni JJ, Hanson AD. Tomato gamma-glutamylhydrolases: expression, characterization, and evidence for heterodimer formation. Plant Physiol. 148: 775-785 (2008).

Akihiro T, Koike S, Tani R, Tominaga T, Watanabe S, Iijima Y, Aoki K, Shibata D, Ashihara H, Matsukura C, Akama K, Fujimura T, Ezura H. Biochemical mechanism on GABA accumulation during fruit development in tomato. Plant Cell Physiol. 49: 1378-1389 (2008).

Al-Daoude A, de Torres Zabala M, Ko JH, Grant M. RIN13 is a positive regulator of the plant disease resistance protein RPM1. Plant Cell 17: 1016-1028 (2005).

Al-Hammadi AS, Sreelakshmi Y, Negi S, Siddiqi I, Sharma R. The polycotyledon mutant of tomato shows enhanced polar auxin transport. Plant Physiol. 133: 113-125 (2003).

Alabadi D, Aguero MS, Perez-Amador MA, Carbonell J. Arginase, arginine decarboxylase, ornithine decarboxylase, and polyamines in tomato ovaries. Changes in unpollinated ovaries and parthenocarpic fruits induced by auxin or gibberellin. Plant Physiol. 112: 1237-1244 (1996).

Alabadi D, Carbonell J. Expression of ornithine decarboxylase is transiently increased by pollination, 2,4-dichlorophenoxyacetic acid, and gibberellic acid in tomato ovaries. Plant Physiol. 118: 323-328 (1998).

Alarcon JJ, Sanchez-Blanco MJ, Bolarin MC, Torrecillas A. Growth and osmotic adjustment of two tomato cultivars during and after saline stress. Plant & Soil 166: 75-82 (1994).

Alba R, Cordonnier-Pratt MM, Pratt LH. Fruit-localized phytochromes regulate lycopene accumulation independently of ethylene production in tomato. Plant Physiol. 123: 363-370 (2000).

Alba R, Fei Z, Payton P, Liu Y, Moore SL, Debbie P, Cohn J, D'Ascenzo M, Gordon JS, Rose JK, Martin G, Tanksley SD, Bouzayen M, Jahn MM, Giovannoni J. ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development. Plant J. 39: 697-714 (2004).

Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ. Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell 17: 2954-2965 (2005).

Albacete A, Ghanem ME, Martinez-Andujar C, Acosta M, Sanchez-Bravo J, Martinez V, Lutts S, Dodd IC, Perez-Alfocea F. Hormonal changes in relation to biomass partitioning and shoot growth impairment in salinized tomato (Solanum lycopersicum L.) plants. J. Exp. Bot. 59: 4119-4131 (2008).

Albacete A, Martinez-Andujar C, Ghanem ME, Acosta M, Sanchez-Bravo J, Asins MJ, Cuartero J, Lutts S, Dodd IC, Perez-Alfocea F. Rootstock-mediated changes in xylem ionic and hormonal status are correlated with delayed leaf senescence, and increased leaf area and crop productivity in salinized tomato. Plant Cell Environ. 32: 928-938 (2009).

Albert M, Belastegui-Macadam X, Kaldenhoff R. An attack of the plant parasite Cuscuta reflexa induces the expression of attAGP, an attachment protein of the host tomato. Plant J. 48: 548-556 (2006).

Alexander L, Grierson D. Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J. Exp. Bot. 53: 2039-2055 (2002).

Alian A, Altman A, Heuer B. Genotypic difference in salinity and water stress tolerance of fresh market tomato cultivars. Plant Sci. 152: 59-65 (2000).

Allegre A, Silvestre J, Morard P, Kallerhoff J, Pinelli E. Nitrate reductase regulation in tomato roots by exogenous nitrate: a possible role in tolerance to long-term root anoxia. J. Exp. Bot. 55: 2625-2634 (2004).

Almeida AM, Jarmuszkiewicz W, Khomsi H, Arruda P, Vercesi AE, Sluse FE. Cyanide-resistant, ATP-synthesis-sustained, and uncoupling-protein-sustained respiration during postharvest ripening of tomato fruit. Plant Physiol. 119: 1323-1330 (1999).

Aloni R, Wolf A, Feigenbaum P, Avni A, Klee HJ. The never ripe mutant provides evidence that tumor-induced ethylene controls the morphogenesis of Agrobacterium tumefaciens-induced crown galls on tomato stems. Plant Physiol. 117: 841-849 (1998).

Altmann T. Recent advances in brassinosteroid molecular genetics. Curr. Opin. Plant Biol. 1: 378-383 (1998).

Alvarado V, Bradford KJ. A hydrothermal time model explains the cardinal temperatures for seed germination. Plant Cell Environ. 25: 1061-1069 (2002).

Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, Eshed Y. Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151 (2006).

Alvarez ML, Pinyerd HL, Topal E, Cardineau GA. P19-dependent and P19-independent reversion of F1-V gene silencing in tomato. Plant Mol. Biol. 68: 61-79 (2008).

Amemiya T, Kanayama Y, Yamaki S, Yamada K, Shiratake K. Fruit-specific V-ATPase suppression in antisense-transgenic tomato reduces fruit growth and seed formation. Planta 223: 1272-1280 (2006).

Ament K, Kant MR, Sabelis MW, Haring MA, Schuurink RC. Jasmonic acid is a key regulator of spider mite-induced volatile terpenoid and methyl salicylate emission in tomato. Plant Physiol. 135: 2025-2037 (2004).

Ament K, Van Schie CC, Bouwmeester HJ, Haring MA, Schuurink RC. Induction of a leaf specific geranylgeranyl pyrophosphate synthase and emission of (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene in tomato are dependent on both jasmonic acid and salicylic acid signaling pathways. Planta 224: 1197-1208 (2006).

Amirjani MR, Sundqvist C. Regeneration of protochlorophyllide in green and greening leaves of plants with varying proportions of protochlorophyllide forms in darkness. Physiol. Plant. 121: 377-390 (2004).

Amitai-Zeigerson H, Scolnik PA, Bar-Zvi D. Genomic nucleotide sequence of tomato Asr2, a second member of the stress/ripening-induced Asr1 gene family. Plant Physiol. 106: 1699-1700 (1994).

Ampomah-Dwamena C, Morris BA, Sutherland P, Veit B, Yao JL. Down-regulation of TM29, a tomato SEPALLATA homolog, causes parthenocarpic fruit development and floral reversion. Plant Physiol. 130: 605-617 (2002).

Anderson JC, Pascuzzi PE, Xiao F, Sessa G, Martin GB. Host-mediated phosphorylation of type III effector AvrPto promotes Pseudomonas virulence and avirulence in tomato. Plant Cell 18: 502-514 (2006).

Andrews J, Adams SR, Burton KS, Edmondson RN. Partial purification of tomato fruit peroxidase and its effect on the mechanical properties of tomato fruit skin. J. Exp. Bot. 53: 2393-2399 (2002).

Andrews J, Adams SR, Burton KS, Evered CE. Subcellular localization of peroxidase in tomato fruit skin and the possible implications for the regulation of fruit growth. J. Exp. Bot. 53: 2185-2191 (2002).

Andrews J, Malone M, Thompson DS, Ho LC, Burton KS. Peroxidase isozyme patterns in the skin of maturing tomato fruit. Plant Cell Environ. 23: 415-422 (2000).

Andrews PK, Fahy DA, Foyer CH. Relationships between fruit exocarp antioxidants in the tomato (Lycopersicon esculentum) high pigment-1 mutant during development. Physiol. Plant. 120: 519-528 (2004).

Anthony RG, Khan S, Costa J, Pais MS, Bogre L. The Arabidopsis protein kinase PTI1-2 is activated by convergent phosphatidic acid and oxidative stress signaling pathways downstream of PDK1 and OXI1. J. Biol. Chem. 281: 37536-37546 (2006).

Aoki K, Wada K. Temporal and spatial distribution of ferredoxin isoproteins in tomato fruit. Plant Physiol. 112: 651-657 (1996).

Aoki K, Yamamoto M, Wada K. Photosynthetic and heterotrophic ferredoxin isoproteins are colocalized in fruit plastids of tomato. Plant Physiol. 118: 439-449 (1998).

Aracri B, Bartley GE, Scolnik PA, Giuliano G. Sequence of the phytoene desaturase locus of tomato. Plant Physiol. 106: 789 (1994).

Arrebola E, Cazorla FM, Duran VE, Rivera E, Olea F, Codina JC, Perez-Garcia A, de Vicente A. Mangotoxin: a novel antimetabolite toxin produced by Pseudomonas syringae inhibiting ornithine/arginine biosynthesis. Physiol. Mol. Plant Pathol. 63: 117-127 (2003).

Asahina M, Iwai H, Kikuchi A, Yamaguchi S, Kamiya Y, Kamada H, Satoh S. Gibberellin produced in the cotyledon is required for cell division during tissue reunion in the cortex of cut cucumber and tomato hypocotyls. Plant Physiol. 129: 201-210 (2002).

Asano T, Masuda D, Yasuda M, Nakashita H, Kudo T, Kimura M, Yamaguchi K, Nishiuchi T. AtNFXL1, an Arabidopsis homologue of the human transcription factor NF-X1, functions as a negative regulator of the trichothecene phytotoxin-induced defense response. Plant J. 53: 450-464 (2008).

Ascenzi R, Gantt JS. A drought-stress-inducible histone gene in Arabidopsis thaliana is a member of a distinct class of plant linker histone variants. Plant Mol. Biol. 34: 629-641 (1997).

Ashworth EN, Pearce RS. Extracellular freezing in leaves of freezing-sensitive species. Planta 214: 798-805 (2002).

Asselbergh B, Curvers K, Franca SC, Audenaert K, Vuylsteke M, Van Breusegem F, Hofte M. Resistance to Botrytis cinerea in sitiens, an abscisic acid-deficient tomato mutant, involves timely production of hydrogen peroxide and cell wall modifications in the epidermis. Plant Physiol. 144: 1863-1877 (2007).

Atkinson RG, Bolitho KM, Wright MA, Iturriagagoitia-Bueno T, Reid SJ, Ross GS. Apple ACC-oxidase and polygalacturonase: ripening-specific gene expression and promoter analysis in transgenic tomato. Plant Mol. Biol. 38: 449-460 (1998).

Attallah CV, Welchen E, Pujol C, Bonnard G, Gonzalez DH. Characterization of Arabidopsis thaliana genes encoding functional homologues of the yeast metal chaperone Cox19p, involved in cytochrome c oxidase biogenesis. Plant Mol. Biol. 65: 343-355 (2007).

Audenaert K, De Meyer GB, Hofte MM. Abscisic acid determines basal susceptibility of tomato to Botrytis cinerea and suppresses salicylic acid-dependent signaling mechanisms. Plant Physiol. 128: 491-501 (2002).

Badejo AA, Eltelib HA, Fukunaga K, Fujikawa Y, Esaka M. Increase in ascorbate content of transgenic tobacco plants overexpressing the acerola (Malpighia glabra) phosphomannomutase gene. Plant Cell Physiol. 50: 423-428 (2009).

Badejo AA, Tanaka N, Esaka M. Analysis of GDP-D-mannose pyrophosphorylase gene promoter from acerola (Malpighia glabra) and increase in ascorbate content of transgenic tobacco expressing the acerola gene. Plant Cell Physiol. 49: 126-132 (2008).

Bageshwar UK, Taneja-Bageshwar S, Moharram HM, Binzel ML. Two isoforms of the A subunit of the vacuolar H(+)-ATPase in Lycopersicon esculentum: highly similar proteins but divergent patterns of tissue localization. Planta 220: 632-643 (2005).

Bagnaresi P, Basso B, Pupillo P. The NADH-dependent Fe(3+)-chelate reductases of tomato roots. Planta 202: 427-434 (1997).

Bahrami AR, Chen ZH, Walker RP, Leegood RC, Gray JE. Ripening-related occurrence of phosphoenolpyruvate carboxykinase in tomato fruit. Plant Mol. Biol. 47: 499-506 (2001).

Bais HP, Fall R, Vivanco JM. Biocontrol of Bacillus subtilis against infection of Arabidopsis roots by Pseudomonas syringae is facilitated by biofilm formation and surfactin production. Plant Physiol. 134: 307-319 (2004).

Balague C, Lin B, Alcon C, Flottes G, Malmstrom S, Kohler C, Neuhaus G, Pelletier G, Gaymard F, Roby D. HLM1, an essential signaling component in the hypersensitive response, is a member of the cyclic nucleotide-gated channel ion channel family. Plant Cell 15: 365-379 (2003).

Balbi V, Lomax TL. Regulation of early tomato fruit development by the diageotropica gene. Plant Physiol. 131: 186-197 (2003).

Baldet P, Devaux C, Chevalier C, Brouquisse R, Just D, Raymond P. Contrasted responses to carbohydrate limitation in tomato fruit at two stages of development. Plant Cell Environ. 25: 1639-1649 (2002).

Baldet P, Hernould M, Laporte F, Mounet F, Just D, Mouras A, Chevalier C, Rothan C. The expression of cell proliferation-related genes in early developing flowers is affected by a fruit load reduction in tomato plants. J. Exp. Bot. 57: 961-970 (2006).

Baldwin JC, Karthikeyan AS, Raghothama KG. LEPS2, a phosphorus starvation-induced novel acid phosphatase from tomato. Plant Physiol. 125: 728-737 (2001).

Ballvora A, Ercolano MR, Weiss J, Meksem K, Bormann CA, Oberhagemann P, Salamini F, Gebhardt C. The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes. Plant J. 30: 361-371 (2002).

Balmuth A, Rathjen JP. Genetic and molecular requirements for function of the Pto/Prf effector recognition complex in tomato and Nicotiana benthamiana. Plant J. 51: 978-990 (2007).

Bancos S, Nomura T, Sato T, Molnar G, Bishop GJ, Koncz C, Yokota T, Nagy F, Szekeres M. Regulation of transcript levels of the Arabidopsis cytochrome P450 genes involved in brassinosteroid biosynthesis. Plant Physiol. 130: 504-513 (2002).

Banilas G, Nikiforiadis A, Makariti I, Moressis A, Hatzopoulos P. Discrete roles of a microsomal linoleate desaturase gene in olive identified by spatiotemporal transcriptional analysis. Tree Physiol. 27: 481-490 (2007).

Barabas NK, Omarov RT, Erdei L, Lips SH. Distribution of the Mo-enzymes aldehyde oxidase, xanthine dehydrogenase and nitrate reductase in maize (Zea mays L.) nodal roots as affected by nitrogen and salinity. Plant Sci. 155: 49-58 (2000).

Baranski R, Baranska M, Schulz H. Changes in carotenoid content and distribution in living plant tissue can be observed and mapped in situ using NIR-FT-Raman spectroscopy. Planta 222: 448-457 (2005).

Barg R, Sobolev I, Eilon T, Gur A, Chmelnitsky I, Shabtai S, Grotewold E, Salts Y. The tomato early fruit specific gene Lefsm1 defines a novel class of plant-specific SANT/MYB domain proteins. Planta 221: 197-211 (2005).

Bargel H, Neinhuis C. Tomato (Lycopersicon esculentum Mill.) fruit growth and ripening as related to the biomechanical properties of fruit skin and isolated cuticle. J. Exp. Bot. 56: 1049-1060 (2005).

Bargmann BO, Laxalt AM, Riet BT, Schouten E, van Leeuwen W, Dekker HL, de Koster CG, Haring MA, Munnik T. LePLDbeta1 activation and relocalization in suspension-cultured tomato cells treated with xylanase. Plant J. 45: 358-368 (2006).

Bargmann BO, Laxalt AM, Riet BT, van Schooten B, Merquiol E, Testerink C, Haring MA, Bartels D, Munnik T. Multiple PLDS required for high salinity and water-deficit tolerance in plants. Plant Cell Physiol. 50: 78-89 (2009).

Bargmann BO, Laxalt AM, ter Riet B, Testerink C, Merquiol E, Mosblech A, Leon-Reyes A, Pieterse CM, Haring MA, Heilmann I, Bartels D, Munnik T. Reassessing the role of phospholipase D in the Arabidopsis wounding response. Plant Cell Environ. 32: 837-850 (2009).

Barka EA. Protective enzymes against reactive oxygen species during ripening of tomato (Lycopersicon esculentum) fruits in response to low amounts of UV-C. Aust. J. Plant Physiol. 28: 785-791 (2001).

Barker CL, Baillie BK, Hammond-Kosack KE, Jones JD, Jones DA. Dominant-negative interference with defence signalling by truncation mutations of the tomato Cf-9 disease resistance gene. Plant J. 46: 385-399 (2006).

Barker CL, Talbot SJ, Jones JD, Jones DA. A tomato mutant that shows stunting, wilting, progressive necrosis and constitutive expression of defence genes contains a recombinant Hcr9 gene encoding an autoactive protein. Plant J. 46: 369-384 (2006).

Barker L, Kuhn C, Weise A, Schulz A, Gebhardt C, Hirner B, Hellmann H, Schulze W, Ward JM, Frommer WB. SUT2, a putative sucrose sensor in sieve elements. Plant Cell 12: 1153-1164 (2000).

Barlow JN, Zhang Z, John P, Baldwin JE, Schofield CJ. Inactivation of 1-aminocyclopropane-1-carboxylate oxidase involves oxidative modifications. Biochemistry 36: 3563-3569 (1997).

Barr J, White WS, Chen L, Bae H, Rodermel S. The GHOST terminal oxidase regulates developmental programming in tomato fruit. Plant Cell Environ. 27: 840-852 (2004).

Barry CS, Blume B, Bouzayen M, Cooper W, Hamilton AJ, Grierson D. Differential expression of the 1-aminocyclopropane-1-carboxylate oxidase gene family of tomato. Plant J. 9: 525-535 (1996).

Barry CS, Fox EA, Yen Hc, Lee S, Ying Tj, Grierson D, Giovannoni JJ. Analysis of the ethylene response in the epinastic mutant of tomato. Plant Physiol. 127: 58-66 (2001).

Barry CS, Llop-Tous MI, Grierson D. The regulation of 1-aminocyclopropane-1-carboxylic acid synthase gene expression during the transition from system-1 to system-2 ethylene synthesis in tomato. Plant Physiol. 123: 979-986 (2000).

Barry CS, McQuinn RP, Thompson AJ, Seymour GB, Grierson D, Giovannoni JJ. Ethylene insensitivity conferred by the Green-ripe and Never-ripe 2 ripening mutants of tomato. Plant Physiol. 138: 267-275 (2005).

Barth I, Meyer S, Sauer N. PmSUC3: characterization of a SUT2/SUC3-type sucrose transporter from Plantago major. Plant Cell 15: 1375-1385 (2003).

Bartley GE, Ishida BK. Ethylene-sensitive and insensitive regulation of transcription factor expression during in vitro tomato sepal ripening. J. Exp. Bot. 58: 2043-2051 (2007).

Bassel GW, Mullen RT, Bewley JD. Procera is a putative DELLA mutant in tomato (Solanum lycopersicum): effects on the seed and vegetative plant. J. Exp. Bot. 59: 585-593 (2008).

Bassel GW, Mullen RT, Bewley JD. ABI3 expression ceases following, but not during, germination of tomato and Arabidopsis seeds. J. Exp. Bot. 57: 1291-1297 (2006).

Bassel GW, Zielinska E, Mullen RT, Bewley JD. Down-regulation of della genes is not essential for germination of tomato, soybean, and Arabidopsis seeds. Plant Physiol. 136: 2782-2789 (2004).

Basset GJ, Quinlivan EP, Ravanel S, Rebeille F, Nichols BP, Shinozaki K, Seki M, Adams-Phillips LC, Giovannoni JJ, Gregory JF 3rd, Hanson AD. Folate synthesis in plants: the p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proc. Natl. Acad. Sci. U.S.A. 101: 1496-1501 (2004).

Basset GJ, Ravanel S, Quinlivan EP, White R, Giovannoni JJ, Rebeille F, Nichols BP, Shinozaki K, Seki M, Gregory JF 3rd, Hanson AD. Folate synthesis in plants: the last step of the p-aminobenzoate branch is catalyzed by a plastidial aminodeoxychorismate lyase. Plant J. 40: 453-461 (2004).

Bauer P, Thiel T, Klatte M, Bereczky Z, Brumbarova T, Hell R, Grosse I. Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato. Plant Physiol. 136: 4169-4183 (2004).

Baumberger N, Doesseger B, Guyot R, Diet A, Parsons RL, Clark MA, Simmons MP, Bedinger P, Goff SA, Ringli C, Keller B. Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Plant Physiol. 131: 1313-1326 (2003).

Baxter CJ, Carrari F, Bauke A, Overy S, Hill SA, Quick PW, Fernie AR, Sweetlove LJ. Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant Cell Physiol. 46: 425-437 (2005).

Baxter CJ, Sabar M, Quick WP, Sweetlove LJ. Comparison of changes in fruit gene expression in tomato introgression lines provides evidence of genome-wide transcriptional changes and reveals links to mapped QTLs and described traits. J. Exp. Bot. 56: 1591-1604 (2005).

Beaubois E, Girard S, Lallechere S, Davies E, Paladian F, Bonnet P, Ledoigt G, Vian A. Intercellular communication in plants: evidence for two rapidly transmitted systemic signals generated in response to electromagnetic field stimulation in tomato. Plant Cell Environ. 30: 834-844 (2007).

Becker D, Stanke R, Fendrik I, Frommer WB, Vanderleyden J, Kaiser WM, Hedrich R. Expression of the NH(4)(+)-transporter gene LEAMT1;2 is induced in tomato roots upon association with N(2)-fixing bacteria. Planta 215: 424-429 (2002).

Becker TW, Caboche M, Carrayol E, Hirel B. Nucleotide sequence of a tobacco cDNA encoding plastidic glutamine synthetase and light inducibility, organ specificity and diurnal rhythmicity in the expression of the corresponding genes of tobacco and tomato. Plant Mol. Biol. 19: 367-379 (1992).

Beckles DM, Craig J, Smith AM. ADP-glucose pyrophosphorylase is located in the plastid in developing tomato fruit. Plant Physiol. 126: 261-266 (2001).

Beclin C, Berthome R, Palauqui JC, Tepfer M, Vaucheret H. Infection of tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of nonviral (trans)genes. Virology 252: 313-317 (1998).

Bednarek P, Winter J, Hamberger B, Oldham NJ, Schneider B, Tan J, Hahlbrock K. Induction of 3'-O-beta-D-ribofuranosyl adenosine during compatible, but not during incompatible, interactions of Arabidopsis thaliana or Lycopersicon esculentum with Pseudomonas syringae pathovar tomato. Planta 218: 668-672 (2004).

Beha EM, Theodorou MK, Thomas BJ, Kingston-Smith AH. Grass cells ingested by ruminants undergo autolysis which differs from senescence: implications for grass breeding targets and livestock production. Plant Cell Environ. 25: 1299-1312 (2002).

Behringer FJ, Lomax TL. Genetic analysis of the roles of phytochromes A and B1 in the reversed gravitropic response of the lz-2 tomato mutant. Plant Cell Environ. 22: 551-558 (1999).

Bekman EP, Saibo NJ, Di Cataldo A, Regalado AP, Ricardo CP, Rodrigues-Pousada C. Differential expression of four genes encoding 1-aminocyclopropane-1-carboxylate synthase in Lupinus albus during germination, and in response to indole-3-acetic acid and wounding. Planta 211: 663-672 (2000).

Belenghi B, Salomon M, Levine A. Caspase-like activity in the seedlings of Pisum sativum eliminates weaker shoots during early vegetative development by induction of cell death. J. Exp. Bot. 55: 889-897 (2004).

Belimov AA, Dodd IC, Safronova VI, Hontzeas N, Davies WJ. Pseudomonas brassicacearum strain Am3 containing 1-aminocyclopropane-1-carboxylate deaminase can show both pathogenic and growth-promoting properties in its interaction with tomato. J. Exp. Bot. 58: 1485-1495 (2007).

Belkhadir Y, Wang X, Chory J. Brassinosteroid signaling pathway. Sci. STKE 364: cm4 (2006).

Bellaoui M, Gruissem W. Altered expression of the Arabidopsis ortholog of DCL affects normal plant development. Planta 219: 819-826 (2004).

Bellaoui M, Keddie JS, Gruissem W. DCL is a plant-specific protein required for plastid ribosomal RNA processing and embryo development. Plant Mol. Biol. 53: 531-543 (2003).

Belles JM, Garro R, Pallas V, Fayos J, Rodrigo I, Conejero V. Accumulation of gentisic acid as associated with systemic infections but not with the hypersensitive response in plant-pathogen interactions. Planta 223: 500-511 (2006).

Belles JM, Perez-Amador MA, Carbonell J, Conejero V. Correlation between ornithine decarboxylase and putrescine in tomato plants infected by Citrus exocortis viroid or treated with ethephon. Plant Physiol. 102: 933-937 (1993).

Ben Amor N, Ben Hamed K, Debez A, Grignon C, Abdelly C. Physiological and antioxidant responses of the perennial halophyte Crithmum maritimum to salinity. Plant Sci. 168: 889-899 (2005).

Ben-Naim O, Eshed R, Parnis A, Teper-Bamnolker P, Shalit A, Coupland G, Samach A, Lifschitz E. The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA. Plant J. 46: 462-476 (2006).

Benghezal M, Wasteneys GO, Jones DA. The C-terminal dilysine motif confers endoplasmic reticulum localization to type I membrane proteins in plants. Plant Cell 12: 1179-1202 (2000).

Benhamou N, Belanger RR. Benzothiadiazole-mediated induced resistance to Fusarium oxysporum f. sp. radicis-lycopersici in tomato. Plant Physiol. 118: 1203-1212 (1998).

Benichou M, Li Z, Tournier B, Chaves A, Zegzouti H, Jauneau A, Delalande C, Latche A, Bouzayen M, Spremulli LL, Pech JC. Tomato EF-Ts(mt), a functional mitochondrial translation elongation factor from higher plants. Plant Mol. Biol. 53: 411-422 (2003).

Berger S, Papadopoulos M, Schreiber U, Kaiser W, Roitsch T. Complex regulation of gene expression, photosynthesis and sugar levels by pathogen infection in tomato. Physiol. Plant. 122: 419-428 (2004).

Bergey DR, Ryan CA. Wound- and systemin-inducible calmodulin gene expression in tomato leaves. Plant Mol. Biol. 40: 815-823 (1999).

Bergougnoux V, Hlavackova V, Plotzova R, Novak O, Fellner M. The 7B-1 mutation in tomato (Solanum lycopersicum L.) confers a blue light-specific lower sensitivity to coronatine, a toxin produced by Pseudomonas syringae pv. tomato. J. Exp. Bot. 60: 1219-1230 (2009).

Bermudez L, Urias U, Milstein D, Kamenetzky L, Asis R, Fernie AR, Van Sluys MA, Carrari F, Rossi M. A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. J. Exp. Bot. 59: 2875-2890 (2008).

Berrocal-Lobo M, Molina A, Solano R. Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. Plant J. 29: 23-32 (2002).

Berteli F, Corrales E, Guerrero C, Ariza MJ, Pliego F, Valpuesta V. Salt stress increases ferredoxin-dependent glutamate synthase activity and protein level in the leaves of tomato. Physiol. Plant. 93: 259-264 (1995).

Bertin N, Borel C, Brunel B, Cheniclet C, Causse M. Do genetic make-up and growth manipulation affect tomato fruit size by cell number, or cell size and DNA endoreduplication? Ann. Bot. (Lond.) 92: 415-424 (2003).

Bertin N, Causse M, Brunel B, Tricon D, Genard M. Identification of growth processes involved in QTLs for tomato fruit size and composition. J. Exp. Bot. 60: 237-248 (2009).

Bertin N, Genard M, Fishman S. A model for an early stage of tomato fruit development: cell multiplication and cessation of the cell proliferative activity. Ann. Bot. (Lond.) 92: 65-72 (2003).

Bertin N, Lecomte A, Brunel B, Fishman S, Genard M. A model describing cell polyploidization in tissues of growing fruit as related to cessation of cell proliferation. J. Exp. Bot. 58: 1903-1913 (2007).

Besser K, Harper A, Welsby N, Schauvinhold I, Slocombe S, Li Y, Dixon RA, Broun P. Divergent regulation of terpenoid metabolism in the trichomes of wild and cultivated tomato species. Plant Physiol. 149: 499-514 (2009).

Bewley JD, Burton RA, Morohashi Y, Fincher GB. Molecular cloning of a cDNA encoding a (1-->4)-beta-mannan endohydrolase from the seeds of germinated tomato (Lycopersicon esculentum). Planta 203: 454-459 (1997).

Beyel V, Bruggemann W. Differential inhibition of photosynthesis during pre-flowering drought stress in Sorghum bicolor genotypes with different senescence traits. Physiol. Plant. 124: 249-259 (2005).

Beyer M, Lau S, Knoche M. Studies on water transport through the sweet cherry fruit surface: IX. Comparing permeability in water uptake and transpiration. Planta 220: 474-485 (2005).

Bharti K, Von Koskull-Doring P, Bharti S, Kumar P, Tintschl-Korbitzer A, Treuter E, Nover L. Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell 16: 1521-1535 (2004).

Bhattarai KK, Li Q, Liu Y, Dinesh-Kumar SP, Kaloshian I. The MI-1-mediated pest resistance requires Hsp90 and Sgt1. Plant Physiol. 144: 312-323 (2007).

Bi JL, Felton GW, Murphy JB, Howles PA, Dixon RA, Lamb CJ. Do plant phenolics confer resistance to specialist and generalist insect herbivores?. J. Agric. Food Chem. 45: 4500-4504 (1997).

Bidonde S, Ferrer MA, Zegzouti H, Ramassamy S, Latche A, Pech JC, Hamilton AJ, Grierson D, Bouzayen M. Expression and characterization of three tomato 1-aminocyclopropane-1-carboxylate oxidase cDNAs in yeast. Eur. J. Biochem. 253: 20-26 (1998).

Birkenmeier GF, Ryan CA. Wound signaling in tomato plants. Evidence that ABA is not a primary signal for defense gene activation. Plant Physiol. 117: 687-693 (1998).

Bischoff M, Rosler J, Raesecke HR, Gorlach J, Amrhein N, Schmid J. Cloning of a cDNA encoding a 3-dehydroquinate synthase from a higher plant, and analysis of the organ-specific and elicitor-induced expression of the corresponding gene. Plant Mol. Biol. 31: 69-76 (1996).

Bischoff M, Schaller A, Bieri F, Kessler F, Amrhein N, Schmid J. Molecular characterization of tomato 3-dehydroquinate dehydratase-shikimate:NADP oxidoreductase. Plant Physiol. 125: 1891-1900 (2001).

Blanc G, Wolfe KH. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678 (2004).

Blanco F, Salinas P, Cecchini NM, Jordana X, Van Hummelen P, Alvarez ME, Holuigue L. Early genomic responses to salicylic acid in Arabidopsis. Plant Mol. Biol. 70: 79-102 (2009).

Bloom AJ, Zwieniecki MA, Passioura JB, Randall LB, Holbrook NM, St Clair DA. Water relations under root chilling in a sensitive and tolerant tomato species. Plant Cell Environ. 27: 971-979 (2004).

Blume B, Barry CS, Hamilton AJ, Bouzayen M, Grierson D. Identification of transposon-like elements in non-coding regions of tomato ACC oxidase genes. Mol. Gen. Genet. 254: 297-303 (1997).

Blume B, Grierson D. Expression of ACC oxidase promoter-GUS fusions in tomato and Nicotiana plumbaginifolia regulated by developmental and environmental stimuli. Plant J. 12: 731-746 (1997).

Boch J, Joardar V, Gao L, Robertson TL, Lim M, Kunkel BN. Identification of Pseudomonas syringae pv. tomato genes induced during infection of Arabidopsis thaliana. Mol. Microbiol. 44: 73-88 (2002).

Bolter CJ. Methyl jasmonate induces papain inhibitor(s) in tomato leaves. Plant Physiol. 103: 1347-1353 (1993).

Bonaventure G, Beisson F, Ohlrogge J, Pollard M. Analysis of the aliphatic monomer composition of polyesters associated with Arabidopsis epidermis: occurrence of octadeca-cis-6, cis-9-diene-1,18-dioate as the major component. Plant J. 40: 920-930 (2004).

Bongue-Bartelsman M, O'Neill SD, Tong Y, Yoder JI. Characterization of the gene encoding dihydroflavonol 4-reductase in tomato. Gene 138: 153-157 (1994).

Bonnema AB, Castillo C, Reiter N, Cunningham M, Adams HP, O'Connell M. Molecular and ultrastructural analysis of a nonchromosomal variegated mutant. Tomato mitochondrial mutants that cause abnormal leaf development. Plant Physiol. 109: 385-392 (1995).

Booij PP, Roberts MR, Vogelzang SA, Kraayenhof R, De Boer AH. 14-3-3 proteins double the number of outward-rectifying K+ channels available for activation in tomato cells. Plant J. 20: 673-683 (1999).

Borsani O, Cuartero J, Fernandez JA, Valpuesta V, Botella MA. Identification of two loci in tomato reveals distinct mechanisms for salt tolerance. Plant Cell 13: 873-888 (2001).

Borsani O, Cuartero J, Valpuesta V, Botella MA. Tomato tos1 mutation identifies a gene essential for osmotic tolerance and abscisic acid sensitivity. Plant J. 32: 905-914 (2002).

Bortolotti S, Boggio SB, Delgado L, Orellano EG, Valle EM. Different induction patterns of glutamate metabolizing enzymes in ripening fruits of the tomato mutant green flesh. Physiol. Plant. 119: 384-391 (2003).

Botella-Pavia P, Besumbes O, Phillips MA, Carretero-Paulet L, Boronat A, Rodriguez-Concepcion M. Regulation of carotenoid biosynthesis in plants: evidence for a key role of hydroxymethylbutenyl diphosphate reductase in controlling the supply of plastidial isoprenoid precursors. Plant J. 40: 188-199 (2004).

Boulay J-L, Miot S. Plant biotechnology, Biochemical engineering, Web alert. Curr. Opin. Biotechnol. 12: 121 (2001).

Bourgault R, Bewley JD. Variation in its C-terminal amino acids determines whether endo-beta-mannanase is active or inactive in ripening tomato fruits of different cultivars. Plant Physiol. 130: 1254-1262 (2002).

Bovy A, De Vos R, Kemper M, Schijlen E, Almenar Pertejo M, Muir S, Collins G, Robinson S, Verhoeyen M, Hughes S, Santos-Buelga C, Van Tunen A. High-flavonol tomatoes resulting from the heterologous expression of the maize transcription factor genes LC and C1. Plant Cell 14: 2509-2526 (2002).

Bowles D. Signal transduction in the wound response of tomato plants. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 353: 1495-1510 (1998).

Boylan MT, Quail PH. Oat phytochrome is biologically active in transgenic tomatoes. Plant Cell 1: 765-773 (1989).

Bozzo GG, Dunn EL, Plaxton WC. Differential synthesis of phosphate-starvation inducible purple acid phosphatase isozymes in tomato (Lycopersicon esculentum) suspension cells and seedlings. Plant Cell Environ. 29: 303-313 (2006).

Bozzo GG, Raghothama KG, Plaxton WC. Purification and characterization of two secreted purple acid phosphatase isozymes from phosphate-starved tomato (Lycopersicon esculentum) cell cultures. Eur. J. Biochem. 269: 6278-6286 (2002).

Bozzo GG, Singh VK, Plaxton WC. Phosphate or phosphite addition promotes the proteolytic turnover of phosphate-starvation inducible tomato purple acid phosphatase isozymes. FEBS Lett. 573: 51-54 (2004).

Bradford KJ, Downie AB, Gee OH, Alvarado V, Yang H, Dahal P. Abscisic acid and gibberellin differentially regulate expression of genes of the SNF1-related kinase complex in tomato seeds. Plant Physiol. 132: 1560-1576 (2003).

Bramley PM. Regulation of carotenoid formation during tomato fruit ripening and development. J. Exp. Bot. 53: 2107-2113 (2002).

Brand A, Shirding N, Shleizer S, Ori N. Meristem maintenance and compound-leaf patterning utilize common genetic mechanisms in tomato. Planta 226: 941-951 (2007).

Braun M, Henstrand JM, Gorlach J, Amrhein N, Schmid J. Enzymatic properties of chorismate synthase isozymes of tomato (Lycopersicon esculentum Mill.). Planta 200: 64-70 (1996).

Breithaupt C, Kurzbauer R, Lilie H, Schaller A, Strassner J, Huber R, Macheroux P, Clausen T. Crystal structure of 12-oxophytodienoate reductase 3 from tomato: self-inhibition by dimerization. Proc. Natl. Acad. Sci. U.S.A. 103: 14337-14342 (2006).

Brenner ED, Lambert KN, Kaloshian I, Williamson VM. Characterization of LeMir, a root-knot nematode-induced gene in tomato with an encoded product secreted from the root. Plant Physiol. 118: 237-247 (1998).

Brewer MT, Lang L, Fujimura K, Dujmovic N, Gray S, van der Knaap E. Development of a controlled vocabulary and software application to analyze fruit shape variation in tomato and other plant species. Plant Physiol. 141: 15-25 (2006).

Brewer MT, Moyseenko JB, Monforte AJ, van der Knaap E. Morphological variation in tomato: a comprehensive study of quantitative trait loci controlling fruit shape and development. J. Exp. Bot. 58: 1339-1349 (2007).

Brigneti G, Martin-Hernandez AM, Jin H, Chen J, Baulcombe DC, Baker B, Jones JD. Virus-induced gene silencing in Solanum species. Plant J. 39: 264-272 (2004).

Brosche M, Strid A. Cloning, expression, and molecular characterization of a small pea gene family regulated by low levels of ultraviolet B radiation and other stresses. Plant Physiol. 121: 479-488 (1999).

Browning JA, Ellory JC, Gibson JS. Pathophysiology of red cell volume. Contrib. Nephrol. 152: 241-268 (2006).

Brownleader MD, Hopkins J, Mobasheri A, Dey PM, Jackson P, Trevan M. Role of extensin peroxidase in tomato (Lycopersicon esculentum Mill.) seedling growth. Planta 210: 668-676 (2000).

Brumbarova T, Bauer P. Iron-mediated control of the basic helix-loop-helix protein FER, a regulator of iron uptake in tomato. Plant Physiol. 137: 1018-1026 (2005).

Brumbarova T, Matros A, Mock HP, Bauer P. A proteomic study showing differential regulation of stress, redox regulation and peroxidase proteins by iron supply and the transcription factor FER. Plant J. 54: 321-334 (2008).

Brummell DA, Balint-Kurti PJ, Harpster MH, Palys JM, Oeller PW, Gutterson N. Inverted repeat of a heterologous 3'-untranslated region for high-efficiency, high-throughput gene silencing. Plant J. 33: 793-800 (2003).

Brummell DA, Hall BD, Bennett AB. Antisense suppression of tomato endo-1,4-beta-glucanase Cel2 mRNA accumulation increases the force required to break fruit abscission zones but does not affect fruit softening. Plant Mol. Biol. 40: 615-622 (1999).

Brummell DA, Harpster MH. Cell wall metabolism in fruit softening and quality and its manipulation in transgenic plants. Plant Mol. Biol. 47: 311-340 (2001).

Brummell DA, Harpster MH, Civello PM, Palys JM, Bennett AB, Dunsmuir P. Modification of expansin protein abundance in tomato fruit alters softening and cell wall polymer metabolism during ripening. Plant Cell 11: 2203-2216 (1999).

Bruno AK, Wetzel CM. The early light-inducible protein (ELIP) gene is expressed during the chloroplast-to-chromoplast transition in ripening tomato fruit. J. Exp. Bot. 55: 2541-2548 (2004).

Brychkova G, Xia Z, Yang G, Yesbergenova Z, Zhang Z, Davydov O, Fluhr R, Sagi M. Sulfite oxidase protects plants against sulfur dioxide toxicity. Plant J. 50: 696-709 (2007).

Bucher M, Brunner S, Zimmermann P, Zardi GI, Amrhein N, Willmitzer L, Riesmeier JW. The expression of an extensin-like protein correlates with cellular tip growth in tomato. Plant Physiol. 128: 911-923 (2002).

Buchter R, Stromberg A, Schmelzer E, Kombrink E. Primary structure and expression of acidic (class II) chitinase in potato. Plant Mol. Biol. 35: 749-761 (1997).

Bucking H, Forster H, Stenzel I, Miersch O, Hause B. Applied jasmonates accumulate extracellularly in tomato, but intracellularly in barley. FEBS Lett. 562: 45-50 (2004).

Bultynck L, Lambers H. Effects of applied gibberellic acid and paclobutrazol on leaf expansion and biomass allocation in two Aegilops species with contrasting leaf elongation rates. Physiol. Plant. 122: 143-151 (2004).

Bunney TD, van den Wijngaard PW, de Boer AH. 14-3-3 protein regulation of proton pumps and ion channels. Plant Mol. Biol. 50: 1041-1051 (2002).

Burbidge A, Grieve TM, Jackson A, Thompson A, McCarty DR, Taylor IB. Characterization of the ABA-deficient tomato mutant notabilis and its relationship with maize Vp14. Plant J. 17: 427-431 (1999).

Burch-Smith TM, Schiff M, Liu Y, Dinesh-Kumar SP. Efficient virus induced gene silencing in Arabidopsis thaliana. Plant Physiol. 142: 21-27 (2006).

Burd GI, Dixon DG, Glick BR. A plant growth-promoting bacterium that decreases nickel toxicity in seedlings. Appl. Environ. Microbiol. 64: 3663-3668 (1998).

Burghardt M, Riederer M. Ecophysiological relevance of cuticular transpiration of deciduous and evergreen plants in relation to stomatal closure and leaf water potential. J. Exp. Bot. 54: 1941-1949 (2003).

Burleigh SH, Cavagnaro T, Jakobsen I. Functional diversity of arbuscular mycorrhizas extends to the expression of plant genes involved in P nutrition. J. Exp. Bot. 53: 1593-1601 (2002).

Busi MV, Bustamante C, D'Angelo C, Hidalgo-Cuevas M, Boggio SB, Valle EM, Zabaleta E. MADS-box genes expressed during tomato seed and fruit development. Plant Mol. Biol. 52: 801-815 (2003).

Caderas D, Muster M, Vogler H, Mandel T, Rose JK, McQueen-Mason S, Kuhlemeier C. Limited correlation between expansin gene expression and elongation growth rate. Plant Physiol. 123: 1399-1414 (2000).

Cai XZ, Xu QF, Wang CC, Zheng Z. Development of a virus-induced gene-silencing system for functional analysis of the RPS2-dependent resistance signalling pathways in Arabidopsis. Plant Mol. Biol. 62: 223-232 (2006).

Cai XZ, Zhou X, Xu YP, Joosten MH, de Wit PJ. Cladosporium fulvum CfHNNI1 induces hypersensitive necrosis, defence gene expression and disease resistance in both host and nonhost plants. Plant Mol. Biol. 64: 89-101 (2007).

Caillau M, Paul Quick W. New insights into plant transaldolase. Plant J. 43: 1-16 (2005).

Campbell BA, Hallengren J, Hannapel DJ. Accumulation of BEL1-like transcripts in Solanaceous species. Planta 228: 897-906 (2008).

Canton FR, Garcia-Gutierrez A, Crespillo R, Canovas FM. High-level expression of Pinus sylvestris glutamine synthetase in Escherichia coli. Production of polyclonal antibodies against the recombinant protein and expression studies in pine seedlings. FEBS Lett. 393: 205-210 (1996).

Cao Y, Yang Y, Zhang H, Li D, Zheng Z, Song F. Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression. Physiol. Plant. 134: 440-452 (2008).

Capiati DA, Pais SM, Tellez-Inon MT. Wounding increases salt tolerance in tomato plants: evidence on the participation of calmodulin-like activities in cross-tolerance signalling. J. Exp. Bot. 57: 2391-2400 (2006).

Carey AT, Holt K, Picard S, Wilde R, Tucker GA, Bird CR, Schuch W, Seymour GB. Tomato exo-(1-->4)-beta-D-galactanase. Isolation, changes during ripening in normal and mutant tomato fruit, and characterization of a related cDNA clone. Plant Physiol. 108: 1099-1107 (1995).

Carmel-Goren L, Liu YS, Lifschitz E, Zamir D. The SELF-PRUNING gene family in tomato. Plant Mol. Biol. 52: 1215-1222 (2003).

Carmi N, Salts Y, Dedicova B, Shabtai S, Barg R. Induction of parthenocarpy in tomato via specific expression of the rolB gene in the ovary. Planta 217: 726-735 (2003).

Carmi N, Zhang G, Petreikov M, Gao Z, Eyal Y, Granot D, Schaffer AA. Cloning and functional expression of alkaline alpha-galactosidase from melon fruit: similarity to plant SIP proteins uncovers a novel family of plant glycosyl hydrolases. Plant J. 33: 97-106 (2003).

Carrari F, Baxter C, Usadel B, Urbanczyk-Wochniak E, Zanor MI, Nunes-Nesi A, Nikiforova V, Centero D, Ratzka A, Pauly M, Sweetlove L, Fernie AR. Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol. 142: 1380-1396 (2006).

Carrari F, Fernie AR. Metabolic regulation underlying tomato fruit development. J. Exp. Bot. 57: 1883-1897 (2006).

Carrari F, Fernie AR, Iusem ND. Heard it through the grapevine? ABA and sugar cross-talk: the ASR story. Trends Plant Sci. 9: 57-59 (2004).

Carrari F, Nunes-Nesi A, Gibon Y, Lytovchenko A, Loureiro ME, Fernie AR. Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiol. 133: 1322-1335 (2003).

Carrington C, Greve LC, Labavitch JM. Cell wall metabolism in ripening fruit. VI. Effect of the antisense polygalacturonase gene on cell wall changes accompanying ripening in transgenic tomatoes. Plant Physiol. 103: 429-434 (1993).

Cartieaux F, Thibaud MC, Zimmerli L, Lessard P, Sarrobert C, David P, Gerbaud A, Robaglia C, Somerville S, Nussaume L. Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. Plant J. 36: 177-188 (2003).

Casal JJ. Phytochrome A enhances the promotion of hypocotyl growth caused by reductions in levels of phytochrome B in its far-red-light-absorbing form in light-grown Arabidopsis thaliana. Plant Physiol. 112: 965-973 (1996).

Castle J, Szekeres M, Jenkins G, Bishop GJ. Unique and overlapping expression patterns of Arabidopsis CYP85 genes involved in brassinosteroid C-6 oxidation. Plant Mol. Biol. 57: 129-140 (2005).

Catala C, Rose JK, Bennett AB. Auxin-regulated genes encoding cell wall-modifying proteins are expressed during early tomato fruit growth. Plant Physiol. 122: 527-534 (2000).

Catala C, Rose JK, York WS, Albersheim P, Darvill AG, Bennett AB. Characterization of a tomato xyloglucan endotransglycosylase gene that is down-regulated by auxin in etiolated hypocotyls. Plant Physiol. 127: 1180-1192 (2001).

Causse M, Duffe P, Gomez MC, Buret M, Damidaux R, Zamir D, Gur A, Chevalier C, Lemaire-Chamley M, Rothan C. A genetic map of candidate genes and QTLs involved in tomato fruit size and composition. J. Exp. Bot. 55: 1671-1685 (2004).

Causse M, Saliba-Colombani V, Lecomte L, Duffe P, Rousselle P, Buret M. QTL analysis of fruit quality in fresh market tomato: a few chromosome regions control the variation of sensory and instrumental traits. J. Exp. Bot. 53: 2089-2098 (2002).

Cervilla LM, Blasco B, Ríos JJ, Romero L, Ruiz JM. Oxidative stress and antioxidants in tomato (Solanum lycopersicum) plants subjected to boron toxicity. Ann. Bot. (Lond.) 100: 747-756 (2007).

Chaabouni S, Jones B, Delalande C, Wang H, Li Z, Mila I, Frasse P, Latche A, Pech JC, Bouzayen M. Sl-IAA3, a tomato Aux/IAA at the crossroads of auxin and ethylene signalling involved in differential growth. J. Exp. Bot. 60: 1349-1362 (2009).

Chae HJ, Ke N, Kim HR, Chen S, Godzik A, Dickman M, Reed JC. Evolutionarily conserved cytoprotection provided by Bax Inhibitor-1 homologs from animals, plants, and yeast. Gene 323: 101-113 (2003).

Chaffei C, Gouia H, Masclaux C, Ghorbel MH. Reversibility effects of cadmium in growth and nitrogen metabolism in tomato plants (Lycopersicon esculentum). C. R. Biol. 326: 401-412 (2003).

Chaffei C, Pageau K, Suzuki A, Gouia H, Ghorbel MH, Masclaux-Daubresse C. Cadmium toxicity induced changes in nitrogen management in Lycopersicon esculentum leading to a metabolic safeguard through an amino acid storage strategy. Plant Cell Physiol. 45: 1681-1693 (2004).

Chaffei C, Suzuki A, Masclaux-Daubresse C, Ghorbel MH, Gouia H. Implication of glutamate, isocitrate and malate deshydrogenases in nitrogen assimilation in the cadmium-stressed tomato. C. R. Biol. 329: 790-803 (2006).

Chakravarthy S, Tuori RP, D'Ascenzo MD, Fobert PR, Despres C, Martin GB. The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elements. Plant Cell 15: 3033-3050 (2003).

Chan YL, Prasad V, Sanjaya, Chen KH, Liu PC, Chan MT, Cheng CP. Transgenic tomato plants expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battle against phytopathogenic attack. Planta 221: 386-393 (2005).

Chang A, Lim MH, Lee SW, Robb J, Nazar RN. Tomato PAL gene family: highly redundant but strongly underutilized. J. Biol. Chem. 283: 33591-33601 (2008).

Chanliaud E, De Silva J, Strongitharm B, Jeronimidis G, Gidley MJ. Mechanical effects of plant cell wall enzymes on cellulose/xyloglucan composites. Plant J. 38: 27-37 (2004).

Chao WS, Gu YQ, Pautot V, Bray EA, Walling LL. Leucine aminopeptidase RNAs, proteins, and activities increase in response to water deficit, salinity, and the wound signals systemin, methyl jasmonate, and abscisic acid. Plant Physiol. 120: 979-992 (1999).

Chatterjee M, Sharma P, Khurana JP. Cryptochrome 1 from Brassica napus is up-regulated by blue light and controls hypocotyl/stem growth and anthocyanin accumulation. Plant Physiol. 141: 61-74 (2006).

Chaturvedi R, Krothapalli K, Makandar R, Nandi A, Sparks AA, Roth MR, Welti R, Shah J. Plastid omega3-fatty acid desaturase-dependent accumulation of a systemic acquired resistance inducing activity in petiole exudates of Arabidopsis thaliana is independent of jasmonic acid. Plant J. 54: 106-117 (2008).

Chen BY, Janes HW. Multiple forms of ADP-glucose pyrophosphorylase from tomato fruit. Plant Physiol. 113: 235-241 (1997).

Chen C, Beattie GA. Characterization of the osmoprotectant transporter OpuC from Pseudomonas syringae and demonstration that CBS domains are required for its osmoregulatory function. J. Bacteriol. 189: 6901-6912 (2007).

Chen F, Bradford KJ. Expression of an expansin is associated with endosperm weakening during tomato seed germination. Plant Physiol. 124: 1265-1274 (2000).

Chen F, Dahal P, Bradford KJ. Two tomato expansin genes show divergent expression and localization in embryos during seed development and germination. Plant Physiol. 127: 928-936 (2001).

Chen F, Nonogaki H, Bradford KJ. A gibberellin-regulated xyloglucan endotransglycosylase gene is expressed in the endosperm cap during tomato seed germination. J. Exp. Bot. 53: 215-223 (2002).

Chen G, Alexander L, Grierson D. Constitutive expression of EIL-like transcription factor partially restores ripening in the ethylene-insensitive Nr tomato mutant. J. Exp. Bot. 55: 1491-1497 (2004).

Chen G, Hackett R, Walker D, Taylor A, Lin Z, Grierson D. Identification of a specific isoform of tomato lipoxygenase (TomloxC) involved in the generation of fatty acid-derived flavor compounds. Plant Physiol. 136: 2641-2651 (2004).

Chen GX, Fu XP, Lips SH, Sagi M. Control of plant growth resides in the shoot, and not in the root, in reciprocal grafts of flacca and wild-type tomato (Lysopersicon esculentum), in the presence and absence of salinity stress. Plant Soil 256: 205-215 (2003).

Chen H, Gonzales-Vigil E, Wilkerson CG, Howe GA. Stability of plant defense proteins in the gut of insect herbivores. Plant Physiol. 143: 1954-1967 (2007).

Chen H, McCaig BC, Melotto M, He SY, Howe GA.. Regulation of plant arginase by wounding, jasmonate, and the phytotoxin coronatine. J. Biol. Chem. 279: 45998-46007 (2004).

Chen HJ, Qualls RG, Blank RR. Effect of soil flooding on photosynthesis, carbohydrate partitioning and nutrient uptake in the invasive exotic Lepidium latifolium. Aquat. Bot. 82: 250-268 (2005).

Chen RD, Tabaeizadeh Z. Expression and molecular cloning of drought-induced genes in the wild tomato Lycopersicon chilense. Biochem. Cell Biol. 70: 199-206 (1992).

Chen S, Gollop N, Heuer B. Proteomic analysis of salt-stressed tomato (Solanum lycopersicum) seedlings: effect of genotype and exogenous application of glycinebetaine. J. Exp. Bot. 60: 2005-2019 (2009).

Chen S, Vaghchhipawala Z, Li W, Asard H, Dickman MB. Tomato phospholipid hydroperoxide glutathione peroxidase inhibits cell death induced by bax and oxidative stresses in yeast and plants. Plant Physiol. 135: 1630-1641 (2004).

Chen YC, Chang HS, Lai HM, Jeng ST. Characterization of the wound-inducible protein ipomoelin from sweet potato. Plant Cell Environ. 28: 251-259 (2005).

Chen YC, Tseng BW, Huang YL, Liu YC, Jeng ST. Expression of the ipomoelin gene from sweet potato is regulated by dephosphorylated proteins, calcium ion and ethylene. Plant Cell Environ. 26: 1373-1383 (2003).

Chen Z, Kloek AP, Cuzick A, Moeder W, Tang D, Innes RW, Klessig DF, McDowell JM, Kunkel BN. The Pseudomonas syringae type III effector AvrRpt2 functions downstream or independently of SA to promote virulence on Arabidopsis thaliana. Plant J. 37: 494-504 (2004).

Chengappa S, Guilleroux M, Phillips W, Shields R. Transgenic tomato plants with decreased sucrose synthase are unaltered in starch and sugar accumulation in the fruit. Plant Mol. Biol. 40: 213-221 (1999).

Cheniclet C, Rong WY, Causse M, Frangne N, Bolling L, Carde JP, Renaudin JP. Cell expansion and endoreduplication show a large genetic variability in pericarp and contribute strongly to tomato fruit growth. Plant Physiol. 139: 1984-1994 (2005).

Cheung AY, McNellis T, Piekos B. Maintenance of chloroplast components during chromoplast differentiation in the tomato mutant green flesh. Plant Physiol. 101: 1223-1229 (1993).

Cheung MY, Zeng NY, Tong SW, Li FW, Zhao KJ, Zhang Q, Sun SS, Lam HM. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 58: 4147-4159 (2007).

Cheung MY, Zeng NY, Tong SW, Wing-Yen Li F, Zhao KJ, Zhang Q, Sai-Ming Sun S, Lam HM. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 59: 2903 (2008).

Chiang YJ, Stushnoff C, McSay AE. Overexpression of mannitol-1-phosphate dehydrogenase increases mannitol accumulation and adds protection against chilling injury in petunia. J. Am. Soc. Hortic. Sci. 130: 605-610 (2005).

Chico JM, Raices M, Tellez-Inon MT, Ulloa RM. A calcium-dependent protein kinase is systemically induced upon wounding in tomato plants. Plant Physiol. 128: 256-270 (2002).

Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G. The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception. Plant Cell 18: 465-476 (2006).

Chinnusamy V, Zhu J, Zhu JK. Gene regulation during cold acclimation in plants. Physiol. Plant. 126: 52-61 (2006).

Choi HW, Lee BG, Kim NH, Park Y, Lim CW, Song HK, Hwang BK. A role for a menthone reductase in resistance against microbial pathogens in plants. Plant Physiol. 148: 383-401 (2008).

Christian M, Steffens B, Schenck D, Luthen H. The diageotropica mutation of tomato disrupts a signalling chain using extracellular auxin binding protein 1 as a receptor. Planta 218: 309-314 (2003).

Chun JP, Huber DJ. Polygalacturonase-mediated solubilization and depolymerization of pectic polymers in tomato fruit cell walls. Regulation by pH and ionic conditions. Plant Physiol. 117: 1293-1299 (1998).

Chung H-J, Sehnke PC, Ferl RJ. The 14-3-3 proteins: cellular regulators of plant metabolism. Trends Plant Sci. 4: 367-371 (1999).

Ciardi JA, Tieman DM, Lund ST, Jones JB, Stall RE, Klee HJ. Response to Xanthomonas campestris pv. vesicatoria in tomato involves regulation of ethylene receptor gene expression. Plant Physiol. 123: 81-92 (2000).

Civello PM, Powell AL, Sabehat A, Bennett AB. An expansin gene expressed in ripening strawberry fruit. Plant Physiol. 121: 1273-1280 (1999).

Clark AJ, Blissett KJ, Oliver RP. Investigating the role of polyols in Cladosporium fulvum during growth under hyper-osmotic stress and in planta. Planta 216: 614-619 (2003).

Clark DG, Gubrium EK, Barrett JE, Nell TA, Klee HJ. Root formation in ethylene-insensitive plants. Plant Physiol. 121: 53-60 (1999).

Clark SM, Di Leo R, Van Cauwenberghe OR, Mullen RT, Shelp BJ. Subcellular localization and expression of multiple tomato gamma-aminobutyrate transaminases that utilize both pyruvate and glyoxylate. J. Exp. Bot. 60: 3255-3267 (2009).

Cle C, Hill LM, Niggeweg R, Martin CR, Guisez Y, Prinsen E, Jansen MA. Modulation of chlorogenic acid biosynthesis in Solanum lycopersicum; consequences for phenolic accumulation and UV-tolerance. Phytochemistry 69: 2149-2156 (2008).

Cline MG, Oh C. A reappraisal of the role of abscisic acid and its interaction with auxin in apical dominance. Ann. Bot. (Lond.) 98: 891-897 (2006).

Cobbett CS. A family of phytochelatin synthase genes from plant, fungal and animal species. Trends Plant Sci. 4: 335-337 (1999).

Coego A, Ramirez V, Ellul P, Mayda E, Vera P. The H2O2-regulated Ep5C gene encodes a peroxidase required for bacterial speck susceptibility in tomato. Plant J. 42: 283-293 (2005).

Coego A, Ramirez V, Gil MJ, Flors V, Mauch-Mani B, Vera P. An Arabidopsis homeodomain transcription factor, OVEREXPRESSOR OF CATIONIC PEROXIDASE 3, mediates resistance to infection by necrotrophic pathogens. Plant Cell 17: 2123-2137 (2005).

Coenen C, Christian M, Luthen H, Lomax TL. Cytokinin inhibits a subset of diageotropica-dependent primary auxin responses in tomato. Plant Physiol. 131: 1692-1704 (2003).

Cohen A, Moses MS, Plant AL, Bray EA. Multiple mechanisms control the expression of abscisic acid (ABA)-requiring genes in tomato plants exposed to soil water deficit. Plant Cell Environ. 22: 989-998 (1999).

Cohen E, Heimer YM, Mizrahi Y. Ornithine decarboxylase and arginine decarboxylase activities in meristematic tissue of tomato and potato plants. Plant Physiol. 70: 544-546 (1982).

Cohn JR, Martin GB. Pseudomonas syringae pv. tomato type III effectors AvrPto and AvrPtoB promote ethylene-dependent cell death in tomato. Plant J. 44: 139-154 (2005).

Coker JS, Vian A, Davies E. Identification, accumulation, and functional prediction of novel tomato transcripts systemically upregulated after fire damage. Physiol. Plant. 124: 311-322 (2005).

Collier R, Fuchs B, Walter N, Kevin Lutke W, Taylor CG. Ex vitro composite plants: an inexpensive, rapid method for root biology. Plant J. 43: 449-457 (2005).

Cong B, Tanksley SD. FW2.2 and cell cycle control in developing tomato fruit: a possible example of gene co-option in the evolution of a novel organ. Plant Mol. Biol. 62: 867-880 (2006).

Constabel CP, Yip L, Ryan CA. Prosystemin from potato, black nightshade, and bell pepper: primary structure and biological activity of predicted systemin polypeptides. Plant Mol. Biol. 36: 55-62 (1998).

Cookson PJ, Kiano JW, Shipton CA, Fraser PD, Romer S, Schuch W, Bramley PM, Pyke KA. Increases in cell elongation, plastid compartment size and phytoene synthase activity underlie the phenotype of the high pigment-1 mutant of tomato. Planta 217: 896-903 (2003).

Cooley MB, Yang H, Dahal P, Mella RA, Downie AB, Haigh AM, Bradford KJ. Vacuolar H(+)-ATPase is expressed in response to gibberellin during tomato seed germination. Plant Physiol. 121: 1339-1348 (1999).

Cooley MB, Yoder JI. Insertional inactivation of the tomato polygalacturonase gene. Plant Mol. Biol. 38: 521-530 (1998).

Cooper RM, Williams JS. Elemental sulphur as an induced antifungal substance in plant defence. J. Exp. Bot. 55: 1947-1953 (2004).

Coppinger P, Repetti PP, Day B, Dahlbeck D, Mehlert A, Staskawicz BJ. Overexpression of the plasma membrane-localized NDR1 protein results in enhanced bacterial disease resistance in Arabidopsis thaliana. Plant J. 40: 225-237 (2004).

Coppoolse ER, de Vroomen MJ, van Gennip F, Hersmus BJ, van Haaren MJ. Size does matter: cre-mediated somatic deletion efficiency depends on the distance between the target lox-sites. Plant Mol. Biol. 58: 687-698 (2005).

Correa-Aragunde N, Graziano M, Chevalier C, Lamattina L. Nitric oxide modulates the expression of cell cycle regulatory genes during lateral root formation in tomato. J. Exp. Bot. 57: 581-588 (2006).

Correa-Aragunde N, Graziano M, Lamattina L. Nitric oxide plays a central role in determining lateral root development in tomato. Planta 218: 900-905 (2004).

Cramer MD, Shane MW, Lambers H. Physiological changes in white lupin associated with variation in root-zone CO2 concentration and cluster-root P mobilization. Plant Cell Environ. 28: 1203-1217 (2005).

Creus CM, Graziano M, Casanovas EM, Pereyra MA, Simontacchi M, Puntarulo S, Barassi CA, Lamattina L. Nitric oxide is involved in the Azospirillum brasilense-induced lateral root formation in tomato. Planta 221: 297-303 (2005).

Criddle RS, Smith BN, Hansen LD. A respiration based description of plant growth rate responses to temperature. Planta 201: 441-445 (1997).

Cross RH, McKay SAB, McHughen AG, Bonham-Smith PC. Heat-stress effects on reproduction and seed set in Linum usitatissimum L. (flax). Plant Cell Environ. 26: 1013-1020 (2003).

Crossley SJ, Greenland AJ, Dickinson HG. The characterisation of tapetum-specific cDNAs isolated from a Lilium henryi L. meiocyte subtractive cDNA library. Planta 196: 523-529 (1995).

Cruz C, Bio AF, Dominguez-Valdivia MD, Aparicio-Tejo PM, Lamsfus C, Martins-Loucao MA. How does glutamine synthetase activity determine plant tolerance to ammonium? Planta 223: 1068-1080 (2006).

Cruz JL, Mosquim PR, Pelacani CR, Araujo WL, DaMatta FM. Effects of nitrate nutrition on nitrogen metabolism in cassava. Biol. Plant. 48: 67-72 (2004).

Cuartero J, Bolarin MC, Asins MJ, Moreno V. Increasing salt tolerance in the tomato. J. Exp. Bot. 57: 1045-1058 (2006).

Cuartero J, Yeo AR, Flowers TJ. Selection of donors for salt tolerance in tomato using physiological traits. New Phytol. 121: 63-69 (1992).

Cunnac S, Wilson A, Nuwer J, Kirik A, Baranage G, Mudgett MB. A conserved carboxylesterase is a SUPPRESSOR OF AVRBST-ELICITED RESISTANCE in Arabidopsis. Plant Cell 19: 688-705 (2007).

Cuntz M, Ogee J, Farquhar GD, Peylin P, Cernusak LA. Modelling advection and diffusion of water isotopologues in leaves. Plant Cell Environ. 30: 892-909 (2007).

Curtis IS, Power JB, de Laat AMM, Caboche M, Davey MR. Expression of a chimeric nitrate reductase gene in transgenic lettuce reduces nitrate in leaves. Plant Cell Rep. 18: 889-896 (1999).

Czarnecka-Verner E, Yuan CX, Scharf KD, Englich G, Gurley WB. Plants contain a novel multi-member class of heat shock factors without transcriptional activator potential. Plant Mol. Biol. 43: 459-471 (2000).

Dai N, Schaffer A, Petreikov M, Shahak Y, Giller Y, Ratner K, Levine A, Granot D. Overexpression of Arabidopsis hexokinase in tomato plants inhibits growth, reduces photosynthesis, and induces rapid senescence. Plant Cell 11: 1253-1266 (1999).

Daie J, Campbell WF. Response of tomato plants to stressful temperatures. Increase in abscisic acid concentrations. Plant Physiol. 67: 26-29 (1981).

Damari-Weissler H, Kandel-Kfir M, Gidoni D, Mett A, Belausov E, Granot D. Evidence for intracellular spatial separation of hexokinases and fructokinases in tomato plants. Planta 224: 1495-1502 (2006).

Daniel-Vedele F, Caboche M. A tobacco cDNA clone encoding a GATA-1 zinc finger protein homologous to regulators of nitrogen metabolism in fungi. Mol. Gen. Genet. 240: 365-373 (1993).

Daniel-Vedele F, Dorbe MF, Caboche M, Rouze P. Cloning and analysis of the tomato nitrate reductase-encoding gene: protein domain structure and amino acid homologies in higher plants. Gene 85: 371-380 (1989).

Daraselia ND, Tarchevskaya S, Narita JO. The promoter for tomato 3-hydroxy-3-methylglutaryl coenzyme A reductase gene 2 has unusual regulatory elements that direct high-level expression. Plant Physiol. 112: 727-733 (1996).

Davidovich-Rikanati R, Lewinsohn E, Bar E, Iijima Y, Pichersky E, Sitrit Y. Overexpression of the lemon basil alpha-zingiberene synthase gene (ZIS) increases both mono- and sesquiterpene contents in tomato fruit. Plant J. 56: 228-238 (2008).

Davis SJ, Bhoo SH, Durski AM, Walker JM, Vierstra RD. The heme-oxygenase family required for phytochrome chromophore biosynthesis is necessary for proper photomorphogenesis in higher plants. Plant Physiol. 126: 656-669 (2001).

Davuluri GR, Tuinen A, Mustilli AC, Manfredonia A, Newman R, Burgess D, Brummell DA, King SR, Palys J, Uhlig J, Pennings HM, Bowler C. Manipulation of DET1 expression in tomato results in photomorphogenic phenotypes caused by post-transcriptional gene silencing. Plant J. 40: 344-354 (2004).

Day DA, Kaiser BN, Thomson R, Udvardi MK, Moreau S, Puppo A. Nutrient transport across symbiotic membranes from legume nodules. Aust. J. Plant Physiol. 28: 667-674 (2001).

Day PR. Genetic modification of plants: significant issues and hurdles to success. Am. J. Clin. Nutr. 63: 651S-656S (1996).

De Groot CC, Van Den Boogaard R, Marcelis LF, Harbinson J, Lambers H. Contrasting effects of N and P deprivation on the regulation of photosynthesis in tomato plants in relation to feedback limitation. J. Exp. Bot. 54: 1957-1967 (2003).

de J, Yakimova ET, Kapchina VM, Woltering EJ. A critical role for ethylene in hydrogen peroxide release during programmed cell death in tomato suspension cells. Planta 214: 537-545 (2002).

de Jong CF, Laxalt AM, Bargmann BO, De Wit PJ, Joosten MH, Munnik T. Phosphatidic acid accumulation is an early response in the Cf-4/Avr4 interaction. Plant J. 39: 1-12 (2004).

de Jong M, Wolters-Arts M, Feron R, Mariani C, Vriezen WH. The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development. Plant J. 57: 160-170 (2009).

De La Fuente Van Bentem S, Vossen JH, Vermeer JE, De Vroomen MJ, Gadella TW Jr, Haring MA, Cornelissen BJ. The subcellular localization of plant protein phosphatase 5 isoforms is determined by alternative splicing. Plant Physiol. 133: 702-712 (2003).

De La Garza RD, Quinlivan EP, Klaus SM, Basset GJ, Gregory JF 3rd, Hanson AD. Folate biofortification in tomatoes by engineering the pteridine branch of folate synthesis. Proc. Natl. Acad. Sci. U.S.A. 101: 13720-13725 (2004).

de Martino G, Pan I, Emmanuel E, Levy A, Irish VF. Functional analyses of two tomato APETALA3 genes demonstrate diversification in their roles in regulating floral development. Plant Cell 18: 1833-1845 (2006).

de Torres M, Mansfield JW, Grabov N, Brown IR, Ammouneh H, Tsiamis G, Forsyth A, Robatzek S, Grant M, Boch J. Pseudomonas syringae effector AvrPtoB suppresses basal defence in Arabidopsis. Plant J. 47: 368-382 (2006).

De Tullio M, Arrigoni O. Ascorbate peroxidase activity in resistant and susceptible plants of Lycopersicon esculentum. Boll. Soc. Ital. Biol. Sper. 68: 613-617 (1992).

De Vos M, Van Zaanen W, Koornneef A, Korzelius JP, Dicke M, Van Loon LC, Pieterse CM. Herbivore-induced resistance against microbial pathogens in Arabidopsis. Plant Physiol. 142: 352-363 (2006).

Debouba M, Gouia H, Suzuki A, Ghorbel MH. NaCl stress effects on enzymes involved in nitrogen assimilation pathway in tomato "Lycopersicon esculentum" seedlings. J. Plant Physiol. 163: 1247-1258 (2006).

Debouba M, Gouia H, Valadier MH, Ghorbel MH, Suzuki A. Salinity-induced tissue-specific diurnal changes in nitrogen assimilatory enzymes in tomato seedlings grown under high or low nitrate medium. Plant Physiol. Biochem. 44: 409-419 (2006).

Debouba M, Maaroufi-Dghimi H, Suzuki A, Ghorbel MH, Gouia H. Changes in growth and activity of enzymes involved in nitrate reduction and ammonium assimilation in tomato seedlings in response to NaCl stress. Ann. Bot. (Lond.) 99: 1143-1151 (2007).

Defernez M, Colquhoun IJ. Factors affecting the robustness of metabolite fingerprinting using 1H NMR spectra. Phytochemistry 62: 1009-1017 (2003).

Deguchi M, Bennett AB, Yamaki S, Yamada K, Kanahama K, Kanayama Y. An engineered sorbitol cycle alters sugar composition, not growth, in transformed tobacco. Plant Cell Environ. 29: 1980-1988 (2006).

del Campillo E, Bennett AB. Pedicel breakstrength and cellulase gene expression during tomato flower abscission. Plant Physiol. 111: 813-820 (1996).

Delmas F, Petit J, Joubes J, Seveno M, Paccalet T, Hernould M, Lerouge P, Mouras A, Chevalier C. The gene expression and enzyme activity of plant 3-deoxy-D-manno-2-octulosonic acid-8-phosphate synthase are preferentially associated with cell division in a cell cycle-dependent manner. Plant Physiol. 133: 348-360 (2003).

Delumeau O, Morere-Le Paven M-C, Montrichard F, Laval-Martin DL. Effects of short-term NaCl stress on calmodulin transcript levels and calmodulin-dependent NAD kinase activity in two species of tomato. Plant Cell Environ. 23: 329-336 (2000).

Delumeau O, Renard M, Montrichard F. Characterization and possible redox regulation of the purified calmodulin-dependent NAD+ kinase from Lycopersicon pimpinellifolium. Plant Cell Environ. 23: 1267-1273 (2000).

Denti MA, Boutla A, Tsagris M, Tabler M. Short interfering RNAs specific for potato spindle tuber viroid are found in the cytoplasm but not in the nucleus. Plant J. 37: 762-769 (2004).

Desvoyes B, Faure-Rabasse S, Chen MH, Park JW, Scholthof HB. A novel plant homeodomain protein interacts in a functionally relevant manner with a virus movement protein. Plant Physiol. 129: 1521-1532 (2002).

Devaux C, Baldet P, Joubes J, Dieuaide-Noubhani M, Just D, Chevalier C, Raymond P. Physiological, biochemical and molecular analysis of sugar-starvation responses in tomato roots. J. Exp. Bot. 54: 1143-1151 (2003).

Dey PM, Brownleader MD, Pantelides AT, Trevan M, Smith JJ, Saddler G. Extensin from suspension-cultured potato cells: a hydroxyproline-rich glycoprotein, devoid of agglutinin activity. Planta 202: 179-187 (1997).

Dhaubhadel S, Chaudhary S, Dobinson KF, Krishna P. Treatment with 24-epibrassinolide, a brassinosteroid, increases the basic thermotolerance of Brassica napus and tomato seedlings. Plant Mol. Biol. 40: 333-342 (1999).

Dhillon T, Chiera JM, Lindbo JA, Finer JJ. Quantitative evaluation of six different viral suppressors of silencing using image analysis of transient GFP expression. Plant Cell Rep. 28: 639-647 (2009).

Di Matteo A, Giovane A, Raiola A, Camardella L, Bonivento D, De Lorenzo G, Cervone F, Bellincampi D, Tsernoglou D. Structural basis for the interaction between pectin methylesterase and a specific inhibitor protein. Plant Cell 17: 849-858 (2005).

Diaz de la Garza RI, Gregory JF 3rd, Hanson AD. Folate biofortification of tomato fruit. Proc. Natl. Acad. Sci. U.S.A. 104: 4218-4222 (2007).

Diaz J, Ten Have A, Van Kan JA. The role of ethylene and wound signaling in resistance of tomato to Botrytis cinerea. Plant Physiol. 129: 1341-1351 (2002).

Dietrich R, Ploss K, Heil M. Growth responses and fitness costs after induction of pathogen resistance depend on environmental conditions. Plant Cell Environ. 28: 211-222 (2005).

Diez-Diaz M, Conejero V, Rodrigo I, Pearce G, Ryan CA. Isolation and characterization of wound-inducible carboxypeptidase inhibitor from tomato leaves. Phytochemistry 65: 1919-1924 (2004).

Digby J, Firn RD. Light modulation of the gravitropic set-point angle (GSA). J. Exp. Bot. 53: 377-381 (2002).

Dillen SY, Marron N, Koch B, Ceulemans R. Genetic variation of stomatal traits and carbon isotope discrimination in two hybrid poplar families (Populus deltoides 'S9-2' x P. nigra 'Ghoy' and P. deltoides 'S9-2' x P. trichocarpa 'V24'). Ann. Bot. (Lond.) 102: 399-407 (2008).

Ding CK, Wang CY, Gross KC, Smith DL. Jasmonate and salicylate induce the expression of pathogenesis-related-protein genes and increase resistance to chilling injury in tomato fruit. Planta 214: 895-901 (2002).

Doares SH, Narvaez-Vasquez J, Conconi A, Ryan CA. Salicylic acid inhibits synthesis of proteinase inhibitors in tomato leaves induced by systemin and jasmonic acid. Plant Physiol. 108: 1741-1746 (1995).

Doczi R, Kondrak M, Kovacs G, Beczner F, Banfalvi Z. Conservation of the drought-inducible DS2 genes and divergences from their ASR paralogues in solanaceous species. Plant Physiol. Biochem. 43: 269-276 (2005).

Dombrowski JE. Salt stress activation of wound-related genes in tomato plants. Plant Physiol. 132: 2098-2107 (2003).

Dong CX, Shen QR, Wang G. Tomato growth and organic acid changes in response to partial replacement of NO3--N by NH4+-N. Pedosphere 14: 159-164 (2004).

Dong Q, Louarn G, Wang Y, Barczi JF, de Reffye P. Does the structure-function model GREENLAB deal with crop phenotypic plasticity induced by plant spacing? A case study on tomato. Ann. Bot. (Lond.) 101: 1195-1206 (2008).

Dorbe MF, Caboche M, Daniel-Vedele F. The tomato nia gene complements a Nicotiana plumbaginifolia nitrate reductase-deficient mutant and is properly regulated. Plant Mol. Biol. 18: 363-375 (1992).

Douchkov D, Gryczka C, Stephan UW, Hell R, Baumlein H. Ectopic expression of nicotianamine synthase genes results in improved iron accumulation and increased nickel tolerance in transgenic tobacco. Plant Cell Environ. 28: 365-374 (2005).

Downie AB, Dirk LM, Xu Q, Drake J, Zhang D, Dutt M, Butterfield A, Geneve RR, Corum JW 3rd, Lindstrom KG, Snyder JC. A physical, enzymatic, and genetic characterization of perturbations in the seeds of the brownseed tomato mutants. J. Exp. Bot. 55: 961-973 (2004).

Downie AB, Zhang D, Dirk LM, Thacker RR, Pfeiffer JA, Drake JL, Levy AA, Butterfield DA, Buxton JW, Snyder JC. Communication between the maternal testa and the embryo and/or endosperm affect testa attributes in tomato. Plant Physiol. 133: 145-160 (2003).

Downie B, Gurusinghe S, Dahal P, Thacker RR, Snyder JC, Nonogaki H, Yim K, Fukanaga K, Alvarado V, Bradford KJ. Expression of a GALACTINOL SYNTHASE gene in tomato seeds is up-regulated before maturation desiccation and again after imbibition whenever radicle protrusion is prevented. Plant Physiol. 131: 1347-1359 (2003).

Doyle EA, Lane AM, Sides JM, Mudgett MB, Monroe JD. An alpha-amylase (At4g25000) in Arabidopsis leaves is secreted and induced by biotic and abiotic stress. Plant Cell Environ. 30: 388-398 (2007).

Drissner D, Kunze G, Callewaert N, Gehrig P, Tamasloukht M, Boller T, Felix G, Amrhein N, Bucher M. Lyso-phosphatidylcholine is a signal in the arbuscular mycorrhizal symbiosis. Science 318: 265-268 (2007).

Droillard MJ, Rouet-Mayer MA, Bureau JM, Lauriere C. Membrane-associated and soluble lipoxygenase isoforms in tomato pericarp. Characterization and involvement in membrane alterations. Plant Physiol. 103: 1211-1219 (1993).

Dubrovsky JG, Soukup A, Napsucialy-Mendivil S, Jeknic Z, Ivanchenko MG. The lateral root initiation index: an integrative measure of primordium formation. Ann. Bot. (Lond.) 103: 807-817 (2009).

Dumville JC, Fry SC. Gentiobiose: a novel oligosaccharin in ripening tomato fruit. Planta 216: 484-495 (2003).

Dumville JC, Fry SC. Solubilisation of tomato fruit pectins by ascorbate: a possible non-enzymic mechanism of fruit softening. Planta 217: 951-961 (2003).

Duprat A, Caranta C, Revers F, Menand B, Browning KS, Robaglia C. The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses. Plant J. 32: 927-934 (2002).

Durrant WE, Rowland O, Piedras P, Hammond-Kosack KE, Jones JD. cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell 12: 963-977 (2000).

Eberhard J, Bischoff M, Raesecke HR, Amrhein N, Schmid J. Isolation of a cDNA from tomato coding for an unregulated, cytosolic chorismate mutase. Plant Mol. Biol. 31: 917-922 (1996).

Eckardt NA. Viral defense and counterdefense: a role for adenosine kinase in innate defense and RNA silencing. Plant Cell 15: 2758-2762 (2003).

Eckardt NA. Tangerine dreams: cloning of carotenoid isomerase from Arabidopsis and tomato. Plant Cell 14: 289-292 (2002).

Eckhardt U, Mas Marques A, Buckhout TJ. Two iron-regulated cation transporters from tomato complement metal uptake-deficient yeast mutants. Plant Mol. Biol. 45: 437-448 (2001).

Egri-Nagy A, Nehaniv CL. Algebraic properties of automata associated to Petri nets and applications to computation in biological systems. Biosystems 94: 135-144 (2008).

Egusa M, Ozawa R, Takabayashi J, Otani H, Kodama M. The jasmonate signaling pathway in tomato regulates susceptibility to a toxin-dependent necrotrophic pathogen. Planta 229: 965-976 (2009).

Ehlert B, Schottler MA, Tischendorf G, Ludwig-Muller J, Bock R. The paramutated SULFUREA locus of tomato is involved in auxin biosynthesis. J. Exp. Bot. 59: 3635-3647 (2008).

Ekengren SK, Liu Y, Schiff M, Dinesh-Kumar SP, Martin GB. Two MAPK cascades, NPR1, and TGA transcription factors play a role in Pto-mediated disease resistance in tomato. Plant J. 36: 905-917 (2003).

El-Sharkawy I, Jones B, Gentzbittel L, Lelievre JM, Pech JC, Latche A. Differential regulation of ACC synthase genes in cold-dependent and -independent ripening in pear fruit. Plant Cell Environ. 27: 1197-1210 (2004).

Elitzur T, Nahum H, Borovsky Y, Pekker I, Eshed Y, Paran I. Co-ordinated regulation of flowering time, plant architecture and growth by FASCICULATE: the pepper orthologue of SELF PRUNING. J. Exp. Bot. 60: 869-880 (2009).

Else MA, Janowiak F, Atkinson CJ, Jackson MB. Root signals and stomatal closure in relation to photosynthesis, chlorophyll a fluorescence and adventitious rooting of flooded tomato plants. Ann. Bot. (Lond.) 103: 313-323 (2009).

Else MA, Taylor JM, Atkinson CJ. Anti-transpirant activity in xylem sap from flooded tomato (Lycopersicon esculentum Mill.) plants is not due to pH-mediated redistributions of root- or shoot-sourced ABA. J. Exp. Bot. 57: 3349-3357 (2006).

Emmanuel E, Levy AA. Tomato mutants as tools for functional genomics. Curr. Opin. Plant Biol. 5: 112-117 (2002).

Enkerli J, Felix G, Boller T. The enzymatic activity of fungal xylanase is not necessary for its elicitor activity. Plant Physiol. 121: 391-398 (1999).

Erickson AN, Markhart AH. Flower developmental stage and organ sensitivity of bell pepper (Capsicum annuum L.) to elevated temperature. Plant Cell Environ. 25: 123-130 (2002).

Eriksson EM, Bovy A, Manning K, Harrison L, Andrews J, De Silva J, Tucker GA, Seymour GB. Effect of the Colorless non-ripening mutation on cell wall biochemistry and gene expression during tomato fruit development and ripening. Plant Physiol. 136: 4184-4197 (2004).

Espartero J, Pintor-Toro JA, Pardo JM. Differential accumulation of S-adenosylmethionine synthetase transcripts in response to salt stress. Plant Mol. Biol. 25: 217-227 (1994).

Estan MT, Martinez-Rodriguez MM, Perez-Alfocea F, Flowers TJ, Bolarin MC. Grafting raises the salt tolerance of tomato through limiting the transport of sodium and chloride to the shoot. J. Exp. Bot. 56: 703-712 (2005).

Ewing NN, Bennett AB. Assessment of the number and expression of P-type H(+)-ATPase genes in tomato. Plant Physiol. 106: 547-557 (1994).

Famiani F, Cultrera NG, Battistelli A, Casulli V, Proietti P, Standardi A, Chen ZH, Leegood RC, Walker RP. Phosphoenolpyruvate carboxykinase and its potential role in the catabolism of organic acids in the flesh of soft fruit during ripening. J. Exp. Bot. 56: 2959-2969 (2005).

Fan J, Crooks C, Lamb C. High-throughput quantitative luminescence assay of the growth in planta of Pseudomonas syringae chromosomally tagged with Photorhabdus luminescens luxCDABE. Plant J. 53: 393-399 (2008).

Farage-Barhom S, Burd S, Sonego L, Perl-Treves R, Lers A. Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes. J. Exp. Bot. 59: 3247-3258 (2008).

Fath A, Boller T. Solubilization, partial purification, and characterization of a binding site for a glycopeptide elicitor from microsomal membranes of tomato cells. Plant Physiol. 112: 1659-1668 (1996).

Fauth M, Schweizer P, Buchala A, Markstadter C, Riederer M, Kato T, Kauss H. Cutin monomers and surface wax constituents elicit H2O2 in conditioned cucumber hypocotyl segments and enhance the activity of other H2O2 elicitors. Plant Physiol. 117: 1373-1380 (1998).

Fawcett JA, Kawahara T, Watanabe H, Yasui Y. A SINE family widely distributed in the plant kingdom and its evolutionary history. Plant Mol. Biol. 61: 505-514 (2006).

Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ. Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J. 40: 47-59 (2004).

Felix G, Baureithel K, Boller T. Desensitization of the perception system for chitin fragments in tomato cells. Plant Physiol. 117: 643-650 (1998).

Felix G, Regenass M, Boller T. Sensing of osmotic pressure changes in tomato cells. Plant Physiol. 124: 1169-1180 (2000).

Fellbrich G, Romanski A, Varet A, Blume B, Brunner F, Engelhardt S, Felix G, Kemmerling B, Krzymowska M, Nurnberger T. NPP1, a Phytophthora-associated trigger of plant defense in parsley and Arabidopsis. Plant J. 32: 375-390 (2002).

Fellner M, Sawhney VK. The 7B-1 mutant in tomato shows blue-light-specific resistance to osmotic stress and abscisic acid. Planta 214: 675-682 (2002).

Felton GW, Korth KL, Bi JL, Wesley SV, Huhman DV, Mathews MC, Murphy JB, Lamb C, Dixon RA. Inverse relationship between systemic resistance of plants to microorganisms and to insect herbivory. Curr. Biol. 9: 317-320 (1999).

Fernandez-Garcia N, Carvajal M, Olmos E. Graft union formation in tomato plants: peroxidase and catalase involvement. Ann. Bot. (Lond.) 93: 53-60 (2004).

Ferrara G, Loffredo E, Senesi N. Phytotoxic, clastogenic and bioaccumulation effects of the environmental endocrine disruptor bisphenol A in various crops grown hydroponically. Planta 223: 910-916 (2006).

Ferrario-Mery S, Thibaud MC, Betsche T, Valadier MH, Foyer CH. Modulation of carbon and nitrogen metabolism, and of nitrate reductase, in untransformed and transformed Nicotiana plumbaginifolia during CO2 enrichment of plants grown in pots and in hydroponic culture. Planta 202: 510-521 (1997).

Ferrie BJ, Beaudoin N, Burkhart W, Bowsher CG, Rothstein SJ. The cloning of two tomato lipoxygenase genes and their differential expression during fruit ripening. Plant Physiol. 106: 109-118 (1994).

Ferrol N, Pozo MJ, Antelo M, Azcon-Aguilar C. Arbuscular mycorrhizal symbiosis regulates plasma membrane H+-ATPase gene expression in tomato plants. J. Exp. Bot. 53: 1683-1687 (2002).

Filichkin SA, Leonard JM, Monteros A, Liu PP, Nonogaki H. A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. Plant Physiol. 134: 1080-1087 (2004).

Fletcher SP, Geyer BC, Smith A, Evron T, Joshi L, Soreq H, Mor TS. Tissue distribution of cholinesterases and anticholinesterases in native and transgenic tomato plants. Plant Mol. Biol. 55: 33-43 (2004).

Flores P, Botella MA, Cerda A, Martinez V. Influence of nitrate level on nitrate assimilation in tomato (Lycopersicon esculentum) plants under saline stress. Can. J. Bot. 82: 207-213 (2004).

Flores P, Botella MA, Martinez V, Cerda A. Ionic and osmotic effects on nitrate reductase activity in tomato seedlings. J. Plant Physiol. 156: 552-557 (2000).

Flores P, Botella MA, Martinez V, Cerda A. Response to salinity of tomato seedlings with a split root system: Nitrate uptake and reduction. J. Plant Nutr. 25: 177-187 (2002).

Flors V, Leyva Mde L, Vicedo B, Finiti I, Real MD, García-Agustín P, Bennett AB, González-Bosch C. Absence of the endo-beta-1,4-glucanases Cel1 and Cel2 reduces susceptibility to Botrytis cinerea in tomato. Plant J. 52: 1027-1040 (2007).

Flors V, Miralles MC, Gonzalez-Bosch C, Carda M, Garcia-Agustin P. Induction of protection against the necrotrophic pathogens Phytophthora citrophthora and Alternaria solani in Lycopersicon esculentum Mill. by a novel synthetic glycoside combined with amines. Planta 216: 929-938 (2003).

Flowers TJ. Improving crop salt tolerance. J. Exp. Bot. 55: 307-319 (2004).

Fofana IB, Sangare A, Collier R, Taylor C, Fauquet CM. A geminivirus-induced gene silencing system for gene function validation in cassava. Plant Mol. Biol. 56: 613-624 (2004).

Forest L, Demongeota J. Cellular modelling of secondary radial growth in conifer trees: application to Pinus radiata (D. Don). Bull. Math. Biol. 68: 753-784 (2006).

Forth D, Pyke KA. The suffulta mutation in tomato reveals a novel method of plastid replication during fruit ripening. J. Exp. Bot. 57: 1971-1979 (2006).

Fos M, Nuez F, Garcia-Martinez JL. The gene pat-2, which induces natural parthenocarpy, alters the gibberellin content in unpollinated tomato ovaries. Plant Physiol. 122: 471-480 (2000).

Fos M, Proano K, Alabadi D, Nuez F, Carbonell J, Garcia-Martinez JL. Polyamine metabolism is altered in unpollinated parthenocarpic pat-2 tomato ovaries. Plant Physiol. 131: 359-366 (2003).

Fowler JH, Narváez-Vásquez J, Aromdee DN, Pautot V, Holzer FM, Walling LL. Leucine aminopeptidase regulates defense and wound signaling in tomato downstream of jasmonic acid. Plant Cell 21: 1239-1251 (2009).

Fradin EF, Zhang Z, Juarez Ayala JC, Castroverde CD, Nazar RN, Robb J, Liu CM, Thomma BP. Genetic dissection of Verticillium wilt resistance mediated by tomato Ve1. Plant Physiol. 150: 320-332 (2009).

Fraisier V, Dorbe MF, Daniel-Vedele F. Identification and expression analyses of two genes encoding putative low-affinity nitrate transporters from Nicotiana plumbaginifolia. Plant Mol. Biol. 45: 181-190 (2001).

Fraser PD, Enfissi EM, Bramley PM. Genetic engineering of carotenoid formation in tomato fruit and the potential application of systems and synthetic biology approaches. Arch. Biochem. Biophys. 483: 196-204 (2009).

Fraser PD, Kiano JW, Truesdale MR, Schuch W, Bramley PM. Phytoene synthase-2 enzyme activity in tomato does not contribute to carotenoid synthesis in ripening fruit. Plant Mol. Biol. 40: 687-698 (1999).

Fraser PD, Pinto ME, Holloway DE, Bramley PM. Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J. 24: 551-558 (2000).

Fraser PD, Schuch W, Bramley PM. Phytoene synthase from tomato (Lycopersicon esculentum) chloroplasts--partial purification and biochemical properties. Planta 211: 361-369 (2000).

Frick UB, Schaller A. cDNA microarray analysis of fusicoccin-induced changes in gene expression in tomato plants. Planta 216: 83-94 (2002).

Fridman E, Wang J, Iijima Y, Froehlich JE, Gang DR, Ohlrogge J, Pichersky E. Metabolic, genomic, and biochemical analyses of glandular trichomes from the wild tomato species Lycopersicon hirsutum identify a key enzyme in the biosynthesis of methylketones. Plant Cell 17: 1252-1267 (2005).

Fridman E, Zamir D. Functional divergence of a syntenic invertase gene family in tomato, potato, and Arabidopsis. Plant Physiol. 131: 603-609 (2003).

Fritz-Laylin LK, Krishnamurthy N, Tor M, Sjolander KV, Jones JD. Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis. Plant Physiol. 138: 611-623 (2005).

Froehlich JE, Itoh A, Howe GA. Tomato allene oxide synthase and fatty acid hydroperoxide lyase, two cytochrome P450s involved in oxylipin metabolism, are targeted to different membranes of chloroplast envelope. Plant Physiol. 125: 306-317 (2001).

Fu DQ, Zhu BZ, Zhu HL, Jiang WB, Luo YB. Virus-induced gene silencing in tomato fruit. Plant J. 43: 299-308 (2005).

Fu H, Park WD. Sink- and vascular-associated sucrose synthase functions are encoded by different gene classes in potato. Plant Cell 7: 1369-1385 (1995).

Fu J, Sampalo R, Gallardo F, Canovas FM, Kirby EG. Assembly of a cytosolic pine glutamine synthetase holoenzyme in leaves of transgenic poplar leads to enhanced vegetative growth in young plants. Plant Cell Environ. 26: 411-418 (2003).

Fujita K, Okada M, Lei K, Ito J, Ohkura K, Adu-Gyamfi JJ, Mohapatra PK. Effect of P-deficiency on photoassimilate partitioning and rhythmic changes in fruit and stem diameter of tomato (Lycopersicon esculentum) during fruit growth. J. Exp. Bot. 54: 2519-2528 (2003).

Fujita T, Kouchi H, Ichikawa T, Syono K. Cloning of cDNAs for genes that are specifically or preferentially expressed during the development of tobacco genetic tumors. Plant J. 5: 645-654 (1994).

Fujita T, Kouchi H, Ichikawa T, Syono K. Isolation and characterization of a cDNA that encodes a novel proteinase inhibitor I from a tobacco genetic tumor. Plant Cell Physiol. 34: 137-142 (1993).

Fujita T, Maggio A, Garcia-Rios M, Bressan RA, Csonka LN. Comparative analysis of the regulation of expression and structures of two evolutionarily divergent genes for delta1-pyrroline-5-carboxylate synthetase from tomato. Plant Physiol. 118: 661-674 (1998).

Fulton TM, Van Der Hoeven R, Eannetta NT, Tanksley SD. Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell 14: 1457-1467 (2002).

Furman-Matarasso N, Cohen E, Du Q, Chejanovsky N, Hanania U, Avni A. A point mutation in the ethylene-inducing xylanase elicitor inhibits the beta-1-4-endoxylanase activity but not the elicitation activity. Plant Physiol. 121: 345-352 (1999).

Gabriels SH, Vossen JH, Ekengren SK, van Ooijen G, Abd-El-Haliem AM, van den Berg GC, Rainey DY, Martin GB, Takken FL, de Wit PJ, Joosten MH. An NB-LRR protein required for HR signalling mediated by both extra- and intracellular resistance proteins. Plant J. 50: 14-28 (2007).

Gaffe J, Bru JP, Causse M, Vidal A, Stamitti-Bert L, Carde JP, Gallusci P. LEFPS1, a tomatofarnesyl pyrophosphate gene highly expressed during early fruit development. Plant Physiol. 123: 1351-1362 (2000).

Gaffe J, Tiznado ME, Handa AK. Characterization and functional expression of a ubiquitously expressed tomato pectin methylesterase. Plant Physiol. 114: 1547-1556 (1997).

Gal TZ, Aussenberg ER, Burdman S, Kapulnik Y, Koltai H. Expression of a plant expansin is involved in the establishment of root knot nematode parasitism in tomato. Planta 224: 155-162 (2006).

Gallego PP, Whotton L, Picton S, Grierson D, Gray JE. A role for glutamate decarboxylase during tomato ripening: the characterisation of a cDNA encoding a putative glutamate decarboxylase with a calmodulin-binding site. Plant Mol. Biol. 27: 1143-1151 (1995).

Galpaz N, Ronen G, Khalfa Z, Zamir D, Hirschberg J. A chromoplast-specific carotenoid biosynthesis pathway is revealed by cloning of the tomato white-flower locus. Plant Cell 18: 1947-1960 (2006).

Galpaz N, Wang Q, Menda N, Zamir D, Hirschberg J. Abscisic acid deficiency in the tomato mutant high-pigment 3 leading to increased plastid number and higher fruit lycopene content. Plant J. 53: 717-730 (2008).

Galtier N, Foyer CH, Huber J, Voelker TA, Huber SC. Effects of elevated sucrose-phosphate synthase activity on photosynthesis, assimilate partitioning, and growth in tomato (Lycopersicon esculentum var UC82B). Plant Physiol. 101: 535-543 (1993).

Gantet P, Imbault N, Thiersault M, Doireau P. Necessity of a functional octadecanoic pathway for indole alkaloid synthesis by Catharanthus roseus cell suspensions cultured in an auxin-starved medium. Plant Cell Physiol. 39: 220-225 (1998).

Gao S, Zhang H, Tian Y, Li F, Zhang Z, Lu X, Chen X, Huang R. Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant Cell Rep. 27: 1787-1795 (2008).

Garcia-Rios M, Fujita T, LaRosa PC, Locy RD, Clithero JM, Bressan RA, Csonka LN. Cloning of a polycistronic cDNA from tomato encoding gamma-glutamyl kinase and gamma-glutamyl phosphate reductase. Proc. Natl. Acad. Sci. U.S.A. 94: 8249-8254 (1997).

Garcia-Rios MG, Csonka LN, Bressan RA, LaRosa PC, Hanquier J. Cloning of a DNA fragment encoding g-glutamyl kinase and g-glutamyl phosphate reductase from a tomato cDNA library. In (JH Cherry ed) NATO ASI Series H "Biochemical and Cellular Mechanisms of Stress Tolerance in Plants", Springer-Verlag, Berlin, pp. 245 - 254 (1994).

Garcia-Rios MG, LaRosa PC, Bressan RA, Csonka LN, Hanquier JM. Cloning by complementation of the gamma-glutamyl kinase gene from a tomato expression library. In "Abstracts of the Third International Congress of Plant Molecular Biology, Molecular Biology of Plant Growth and Development" (RB Hallick ed) 6-11 Oct. 1991, Tucson, Arizona (1991).

Garoosi GA, Salter MG, Caddick MX, Tomsett AB. Characterization of the ethanol-inducible alc gene expression system in tomato. J. Exp. Bot. 56: 1635-1642 (2005).

Garstka M, Venema JH, Rumak I, Gieczewska K, Rosiak M, Koziol-Lipinska J, Kierdaszuk B, Vredenberg WJ, Mostowska A. Contrasting effect of dark-chilling on chloroplast structure and arrangement of chlorophyll-protein complexes in pea and tomato: plants with a different susceptibility to non-freezing temperature. Planta 226: 1165-1181 (2007).

Gary C, Baldet P, Bertin N, Devaux C, Tchamitchian M, Raymond P. Time-course of tomato whole-plant respiration and fruit and stem growth during prolonged darkness in relation to carbohydrate reserves. Ann. Bot. (Lond.) 91: 429-438 (2003).

Gasser CS, Winter JA, Hironaka CM, Shah DM. Structure, expression, and evolution of the 5-enolpyruvylshikimate-3-phosphate synthase genes of petunia and tomato. J. Biol. Chem. 263: 4280-4287 (1988).

Gautier H, Massot C, Stevens R, Serino S, Genard M. Regulation of tomato fruit ascorbate content is more highly dependent on fruit irradiance than leaf irradiance. Ann. Bot. (Lond.) 103: 495-504 (2009).

Gear ML, McPhillips ML, Patrick JW, McCurdy DW. Hexose transporters of tomato: molecular cloning, expression analysis and functional characterization. Plant Mol. Biol. 44: 687-697 (2000).

Genoud T, Buchala AJ, Chua NH, Metraux JP. Phytochrome signalling modulates the SA-perceptive pathway in Arabidopsis. Plant J. 31: 87-95 (2002).

Gerendas J, Zhu ZJ, Bendixen R, Ratcliffe RG, Sattelmacher B. Physiological and biochemical processes related to ammonium toxicity in higher plants. Z. Pflanzenernahrung Und Bodenkunde 160: 239-251 (1997).

Germain V, Raymond P, Ricard B. Differential expression of two tomato lactate dehydrogenase genes in response to oxygen deficit. Plant Mol. Biol. 35: 711-721 (1997).

Germain V, Ricard B. Two ldh genes from tomato and their expression in different organs, during fruit ripening and in response to stress. Plant Mol. Biol. 35: 949-954 (1997).

German MA, Dai N, Matsevitz T, Hanael R, Petreikov M, Bernstein N, Ioffe M, Shahak Y, Schaffer AA, Granot D. Suppression of fructokinase encoded by LeFRK2 in tomato stem inhibits growth and causes wilting of young leaves. Plant J. 34: 837-846 (2003).

Ghanem ME, Albacete A, Martinez-Andujar C, Acosta M, Romero-Aranda R, Dodd IC, Lutts S, Perez-Alfocea F. Hormonal changes during salinity-induced leaf senescence in tomato (Solanum lycopersicum L.). J. Exp. Bot. 59: 3039-3050 (2008).

Gharbi I, Ricard B, Rolin D, Maucourt M, Andrieu MH, Bizid E, Smiti S, Brouquisse R. Effect of hexokinase activity on tomato root metabolism during prolonged hypoxia. Plant Cell Environ. 30: 508-517 (2007).

Ghosh R, Chakrabarti C. Crystal structure analysis of NP24-I: a thaumatin-like protein. Planta 228: 883-890 (2008).

Gidoni D, Fuss E, Burbidge A, Speckmann GJ, James S, Nijkamp D, Mett A, Feiler J, Smoker M, de Vroomen MJ, Leader D, Liharska T, Groenendijk J, Coppoolse E, Smit JJ, Levin I, de Both M, Schuch W, Jones JD, Taylor IB, Theres K, van Haaren MJ. Multi-functional T-DNA/Ds tomato lines designed for gene cloning and molecular and physical dissection of the tomato genome. Plant Mol. Biol. 51: 83-98 (2003).

Giliberto L, Perrotta G, Pallara P, Weller JL, Fraser PD, Bramley PM, Fiore A, Tavazza M, Giuliano G. Manipulation of the blue light photoreceptor cryptochrome 2 in tomato affects vegetative development, flowering time, and fruit antioxidant content. Plant Physiol. 137: 199-208 (2005).

Gillaspy GE, Keddie JS, Oda K, Gruissem W. Plant inositol monophosphatase is a lithium-sensitive enzyme encoded by a multigene family. Plant Cell 7: 2175-2185 (1995).

Gillespie J, Rogers SW, Deery M, Dupree P, Rogers JC. A unique family of proteins associated with internalized membranes in protein storage vacuoles of the Brassicaceae. Plant J. 41: 429-441 (2005).

Gilroy EM, Hein I, van der Hoorn R, Boevink PC, Venter E, McLellan H, Kaffarnik F, Hrubikova K, Shaw J, Holeva M, Lopez EC, Borras-Hidalgo O, Pritchard L, Loake GJ, Lacomme C, Birch PR. Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant J. 52: 1-13 (2007).

Gindullis F, Peffer NJ, Meier I. MAF1, a novel plant protein interacting with matrix attachment region binding protein MFP1, is located at the nuclear envelope. Plant Cell 11: 1755-1768 (1999).

Giombini MI, Frankel N, Iusem ND, Hasson E. Nucleotide polymorphism in the drought responsive gene Asr2 in wild populations of tomato. Genetica 136: 13-25 (2009).

Giordani C, Cecchi S, Zanchi C. Phytoremediation of soil polluted by nickel using agricultural crops. Environ. Manage. 36: 675-681 (2005).

Giovannoni J. Molecular biology of fruit maturation and ripening. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 725-749 (2001).

Giovannoni JJ. Fruit ripening mutants yield insights into ripening control. Curr. Opin. Plant Biol. 10: 283-289 (2007).

Giritch A, Ganal M, Stephan UW, Baumlein H. Structure, expression and chromosomal localisation of the metallothionein-like gene family of tomato. Plant Mol. Biol. 37: 701-714 (1998).

Gisbert C, Rus AM, Bolarin MC, Lopez-Coronado JM, Arrillaga I, Montesinos C, Caro M, Serrano R, Moreno V. The yeast HAL1 gene improves salt tolerance of transgenic tomato. Plant Physiol. 123: 393-402 (2000).

Glombitza S, Dubuis PH, Thulke O, Welzl G, Bovet L, Gotz M, Affenzeller M, Geist B, Hehn A, Asnaghi C, Ernst D, Seidlitz HK, Gundlach H, Mayer KF, Martinoia E, Werck-Reichhart D, Mauch F, Schaffner AR. Crosstalk and differential response to abiotic and biotic stressors reflected at the transcriptional level of effector genes from secondary metabolism. Plant Mol. Biol. 54: 817-835 (2004).

Gnanasambandam A, Polkinghorne IG, Birch RG. Heterologous signals allow efficient targeting of a nuclear-encoded fusion protein to plastids and endoplasmic reticulum in diverse plant species. Plant Biotechnol. J. 5: 290-296 (2007).

Godt DE, Roitsch T. Regulation and tissue-specific distribution of mRNAs for three extracellular invertase isoenzymes of tomato suggests an important function in establishing and maintaining sink metabolism. Plant Physiol. 115: 273-282 (1997).

Goff SA, Klee HJ. Plant volatile compounds: sensory cues for health and nutritional value? Science 311: 815-819 (2006).

Goldsbrough A, Belzile F, Yoder JI. Complementation of the tomato anthocyanin without (aw) mutant using the dihydroflavonol 4-reductase gene. Plant Physiol. 105: 491-496 (1994).

Gomez MD, Beltran JP, Canas LA. The pea END1 promoter drives anther-specific gene expression in different plant species. Planta 219: 967-981 (2004).

Gomez P, Jamilena M, Capel J, Zurita S, Angosto T, Lozano R. Stamenless, a tomato mutant with homeotic conversions in petals and stamens. Planta 209: 172-179 (1999).

Gomez-Lim MA, Valdes-Lopez V, Cruz-Hernandez A, Saucedo-Arias LJ. Isolation and characterization of a gene involved in ethylene biosynthesis from Arabidopsis thaliana. Gene 134: 217-221 (1993).

Gong X, Bewley DJ. A GAMYB-like gene in tomato and its expression during seed germination. Planta 228: 563-572 (2008).

Gong ZZ, Yamagishi E, Yamazaki M, Saito K. A constitutively expressed Myc-like gene involved in anthocyanin biosynthesis from Perilla frutescens: molecular characterization, heterologous expression in transgenic plants and transactivation in yeast cells. Plant Mol. Biol. 41: 33-44 (1999).

Gonorazky G, Laxalt AM, Testerink C, Munnik T, DE LA Canal L. Phosphatidylinositol 4-phosphate accumulates extracellularly upon xylanase treatment in tomato cell suspensions. Plant Cell Environ. 31: 1051-1062 (2008).

Gonzalez N, Gevaudant F, Hernould M, Chevalier C, Mouras A. The cell cycle-associated protein kinase WEE1 regulates cell size in relation to endoreduplication in developing tomato fruit. Plant J. 51: 642-655 (2007).

Gonzalez-Bosch C, del Campillo E, Bennett AB. Immunodetection and characterization of tomato endo-beta-1,4-glucanase Cel1 protein in flower abscission zones. Plant Physiol. 114: 1541-1546 (1997).

Gonzalez-Lamothe R, Tsitsigiannis DI, Ludwig AA, Panicot M, Shirasu K, Jones JD. The U-box protein CMPG1 is required for efficient activation of defense mechanisms triggered by multiple resistance genes in tobacco and tomato. Plant Cell 18: 1067-1083 (2006).

Gonzali S, Mazzucato A, Perata P. Purple as a tomato: towards high anthocyanin tomatoes. Trends Plant Sci. 14: 237-241 (2009).

Good X, Kellogg JA, Wagoner W, Langhoff D, Matsumura W, Bestwick RK. Reduced ethylene synthesis by transgenic tomatoes expressing S-adenosylmethionine hydrolase. Plant Mol. Biol. 26: 781-790 (1994).

Gorlach J, Beck A, Henstrand JM, Handa AK, Herrmann KM, Schmid J, Amrhein N. Differential expression of tomato (Lycopersicon esculentum L.) genes encoding shikimate pathway isoenzymes. I. 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. Plant Mol. Biol. 23: 697-706 (1993).

Gorlach J, Raesecke HR, Abel G, Wehrli R, Amrhein N, Schmid J. Organ-specific differences in the ratio of alternatively spliced chorismate synthase (LeCS2) transcripts in tomato. Plant J. 8: 451-456 (1995).

Gorlach J, Raesecke HR, Rentsch D, Regenass M, Roy P, Zala M, Keel C, Boller T, Amrhein N, Schmid J. Temporally distinct accumulation of transcripts encoding enzymes of the prechorismate pathway in elicitor-treated, cultured tomato cells. Proc. Natl. Acad. Sci. U.S.A. 92: 3166-3170 (1995).

Gorlach J, Schmid J, Amrhein N. Differential expression of tomato (Lycopersicon esculentum L.) genes encoding shikimate pathway isoenzymes. II. Chorismate synthase. Plant Mol. Biol. 23: 707-716 (1993).

Gorlach J, Schmid J, Amrhein N. Abundance of transcripts specific for genes encoding enzymes of the prechorismate pathway in different organs of tomato (Lycopersicon esculentum L.) plants. Planta 193: 216-223 (1994).

Goud KV, Sharma R. Retention of photoinduction of cytosolic enzymes in aurea mutant of tomato (Lycopersicon esculentum). Plant Physiol. 105: 643-650 (1994).

Govindachary S, Bukhov NG, Joly D, Carpentier R. Photosystem II inhibition by moderate light under low temperature in intact leaves of chilling-sensitive and -tolerant plants. Physiol. Plant. 121: 322-333 (2004).

Goyer A, Illarionova V, Roje S, Fischer M, Bacher A, Hanson AD. Folate biosynthesis in higher plants. cDNA cloning, heterologous expression, and characterization of dihydroneopterin aldolases. Plant Physiol. 135: 103-111 (2004).

Granado J, Felix G, Boller T. Perception of fungal sterols in plants. Subnanomolar concentrations of ergosterol elicit extracellular alkalinization in tomato cells. Plant Physiol. 107: 485-490 (1995).

Grant JJ, Yun BW, Loake GJ. Oxidative burst and cognate redox signalling reported by luciferase imaging: identification of a signal network that functions independently of ethylene, SA and Me-JA but is dependent on MAPKK activity. Plant J. 24: 569-582 (2000).

Grant M, Brown I, Adams S, Knight M, Ainslie A, Mansfield J. The RPM1 plant disease resistance gene facilitates a rapid and sustained increase in cytosolic calcium that is necessary for the oxidative burst and hypersensitive cell death. Plant J. 23: 441-450 (2000).

Grantz AA, Brummell DA, Bennett AB. Ascorbate free radical reductase mRNA levels are induced by wounding. Plant Physiol. 108: 411-418 (1995).

Graziano M, Lamattina L. Nitric oxide accumulation is required for molecular and physiological responses to iron deficiency in tomato roots. Plant J. 52: 949-860 (2007).

Greb T, Schmitz G, Theres K. Isolation and characterization of the Spindly homologue from tomato. J. Exp. Bot. 53: 1829-1830 (2002).

Grenville-Briggs LJ, Avrova AO, Bruce CR, Williams A, Whisson SC, Birch PR, van West P. Elevated amino acid biosynthesis in Phytophthora infestans during appressorium formation and potato infection. Fungal Genet. Biol. 42: 244-256 (2005).

Grimplet J, Romieu C, Audergon JM, Marty I, Albagnac G, Lambert P, Bouchet JP, Terrier N. Transcriptomic study of apricot fruit (Prunus armeniaca) ripening among 13,006 expressed sequence tags. Physiol. Plant. 125: 281-292 (2005).

Gross N, Wasternack C, Kock M. Wound-induced RNaseLE expression is jasmonate and systemin independent and occurs only locally in tomato (Lycopersicon esculentum cv. Lukullus). Phytochemistry 65: 1343-1350 (2004).

Groszmann M, Paicu T, Smyth DR. Functional domains of SPATULA, a bHLH transcription factor involved in carpel and fruit development in Arabidopsis. Plant J. 55: 40-52 (2008).

Gu YQ, Walling LL. Identification of residues critical for activity of the wound-induced leucine aminopeptidase (LAP-A) of tomato. Eur. J. Biochem. 269: 1630-1640 (2002).

Gu YQ, Yang C, Thara VK, Zhou J, Martin GB. Pti4 is induced by ethylene and salicylic acid, and its product is phosphorylated by the Pto kinase. Plant Cell 12: 771-786 (2000).

Guan L, Scandalios JG. Molecular evolution of maize catalases and their relationship to other eukaryotic and prokaryotic catalases. J. Mol. Evol. 42: 570-579 (1996).

Gudesblat GE, Torres PS, Vojnov AA. Xanthomonas campestris overcomes Arabidopsis stomatal innate immunity through a DSF cell-cell signal-regulated virulence factor. Plant Physiol. 149: 1017-1027 (2009).

Guillet C, Just D, Benard N, Destrac-Irvine A, Baldet P, Hernould M, Causse M, Raymond P, Rothan C. A fruit-specific phosphoenolpyruvate carboxylase is related to rapid growth of tomato fruit. Planta 214: 717-726 (2002).

Guillon F, Philippe S, Bouchet B, Devaux MF, Frasse P, Jones B, Bouzayen M, Lahaye M. Down-regulation of an Auxin Response Factor in the tomato induces modification of fine pectin structure and tissue architecture. J. Exp. Bot. 59: 273-288 (2008).

Guo JM, Jermyn WA, Turnbull MH. Carbon metabolism in developing spears of two asparagus (Asparagus officinalis) cultivars with contrasting yield. Aust. J. Plant Physiol. 28: 1013-1021 (2001).

Guo K, Kong WW, Yang ZM. Carbon monoxide promotes root hair development in tomato. Plant Cell Environ. Apr 2 [Epub ahead of print] (2009).

Guo K, Xia K, Yang ZM. Regulation of tomato lateral root development by carbon monoxide and involvement in auxin and nitric oxide. J. Exp. Bot. 59: 3443-3452 (2008).

Gur A, Semel Y, Cahaner A, Zamit D. Real time QTL of complex phenotypes in tomato interspecific introgression lines. Trends Plant Sci. 9: 107-109 (2004).

Gutierrez C. Geminiviruses and the plant cell cycle. Plant Mol. Biol. 43: 763-772 (2000).

Gutterson N, Reuber TL. Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr. Opin. Plant Biol. 7: 465-471 (2004).

Guyon V, Tang WH, Monti MM, Raiola A, Lorenzo GD, McCormick S, Taylor LP. Antisense phenotypes reveal a role for SHY, a pollen-specific leucine-rich repeat protein, in pollen tube growth. Plant J. 39: 643-654 (2004).

Guyot R, Cheng X, Su Y, Cheng Z, Schlagenhauf E, Keller B, Ling HQ. Complex organization and evolution of the tomato pericentromeric region at the FER gene locus. Plant Physiol. 138: 1205-1215 (2005).

Hackel A, Schauer N, Carrari F, Fernie AR, Grimm B, Kuhn C. Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant J. 45: 180-192 (2006).

Hackett RM, Ho CW, Lin Z, Foote HC, Fray RG, Grierson D. Antisense inhibition of the Nr gene restores normal ripening to the tomato Never-ripe mutant, consistent with the ethylene receptor- inhibition model. Plant Physiol. 124: 1079-1086 (2000).

Hadfield KA, Rose JK, Yaver DS, Berka RM, Bennett AB. Polygalacturonase gene expression in ripe melon fruit supports a role for polygalacturonase in ripening-associated pectin disassembly. Plant Physiol. 117: 363-373 (1998).

Haldrup A, Petersen SG, Okkels FT. The xylose isomerase gene from Thermoanaerobacterium thermosulfurogenes allows effective selection of transgenic plant cells using D-xylose as the selection agent. Plant Mol. Biol. 37: 287-296 (1998).

Hall RD, Brouwer ID, Fitzgerald MA. Plant metabolomics and its potential application for human nutrition. Physiol. Plant. 132: 162-175 (2008).

Hammond-Kosack KE, Tang S, Harrison K, Jones JD. The tomato Cf-9 disease resistance gene functions in tobacco and potato to confer responsiveness to the fungal avirulence gene product avr 9. Plant Cell 10: 1251-1266 (1998).

Han Y, Griffiths A, Li H, Grierson D. The effect of endogenous mRNA levels on co-suppression in tomato. FEBS Lett. 563: 123-128 (2004).

Handa AK, Singh NK, Biggs MS. Effect of tunicamycin on in vitro ripening of tomato pericarp tissue. Physiol. Plant. 63: 417-424 (1985).

Hanitzsch M, Schnitzer D, Seidel T, Golldack D, Dietz KJ. Transcript level regulation of the vacuolar H(+)-ATPase subunit isoforms VHA-a, VHA-E and VHA-G in Arabidopsis thaliana. Mol. Membr. Biol. 24: 507-518 (2007).

Hansen H, Grossmann K. Auxin-induced ethylene triggers abscisic acid biosynthesis and growth inhibition. Plant Physiol. 124: 1437-1448 (2000).

Harder PA, Silverstein RA, Meier I. Conservation of matrix attachment region-binding filament-like protein 1 among higher plants. Plant Physiol. 122: 225-234 (2000).

Harms K, Atzorn R, Brash A, Kuhn H, Wasternack C, Willmitzer L, Pena-Cortes H. Expression of a flax allene oxide synthase cDNA leads to increased endogenous jasmonic acid (JA) levels in transgenic potato plants but not to a corresponding activation of JA-responding genes. Plant Cell 7: 1645-1654 (1995).

Harrak H, Chamberland H, Plante M, Bellemare G, Lafontaine JG, Tabaeizadeh Z. A proline-, threonine-, and glycine-rich protein down-regulated by drought is localized in the cell wall of xylem elements. Plant Physiol. 121: 557-564 (1999).

Hartje S, Zimmermann S, Klonus D, Mueller-Roeber B. Functional characterisation of LKT1, a K+ uptake channel from tomato root hairs, and comparison with the closely related potato inwardly rectifying K+ channel SKT1 after expression in Xenopus oocytes. Planta 210: 723-731 (2000).

Hattrup E, Neilson KA, Breci L, Haynes PA. Proteomic analysis of shade-avoidance response in tomato leaves. J. Agric. Food Chem. 55: 8310-8318 (2007).

Haupt-Herting S, Fock HP. Oxygen exchange in relation to carbon assimilation in water-stressed leaves during photosynthesis. Ann. Bot. (Lond.) 89: 851-859 (2002).

Haupt-Herting S, Klug K, Fock HP. A new approach to measure gross CO2 fluxes in leaves. Gross CO2 assimilation, photorespiration, and mitochondrial respiration in the light in tomato under drought stress. Plant Physiol. 126: 388-396 (2001).

Hause G, Lischewski S, Wessjohann LA, Hause B. Epothilone D affects cell cycle and microtubular pattern in plant cells. J. Exp. Bot. 56: 2131-2137 (2005).

Hauser BA, Pratt LH, Cordonnier-Pratt MM. Absolute quantification of five phytochrome transcripts in seedlings and mature plants of tomato (Solanum lycopersicum L.). Planta 201: 379-387 (1997).

Hauser HD, Walters KD, Berg VS. Patterns of effective permeability of leaf cuticles to acids. Plant Physiol. 101: 251-257 (1993).

Haywood V, Yu TS, Huang NC, Lucas WJ. Phloem long-distance trafficking of GIBBERELLIC ACID-INSENSITIVE RNA regulates leaf development. Plant J. 42: 49-68 (2005).

He P, Chintamanani S, Chen Z, Zhu L, Kunkel BN, Alfano JR, Tang X, Zhou JM. Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine. Plant J. 37: 589-602 (2004).

He X, Anderson JC, Pozo Od O, Gu YQ, Tang X, Martin GB. Silencing of subfamily I of protein phosphatase 2A catalytic subunits results in activation of plant defense responses and localized cell death. Plant J. 38: 563-577 (2004).

Heck S, Grau T, Buchala A, Metraux JP, Nawrath C. Genetic evidence that expression of NahG modifies defence pathways independent of salicylic acid biosynthesis in the Arabidopsis-Pseudomonas syringae pv. tomato interaction. Plant J. 36: 342-352 (2003).

Heese A, Ludwig AA, Jones JD. Rapid phosphorylation of a syntaxin during the Avr9/Cf-9-race-specific signaling pathway. Plant Physiol. 138: 2406-2416 (2005).

Heitz T, Bergey DR, Ryan CA. A gene encoding a chloroplast-targeted lipoxygenase in tomato leaves is transiently induced by wounding, systemin, and methyl jasmonate. Plant Physiol. 114: 1085-1093 (1997).

Henzi MX, McNeil DL, Christey MC, Lill RE. A tomato antisense 1-aminocyclopropane-1-carboxylic acid oxidase gene causes reduced ethylene production in transgenic broccoli. Aust. J. Plant Physiol. 26: 179-183 (1999).

Herbette S, Brunel N, Prensier G, Julien JL, Drevet JR, Roeckel-Drevet P. Immunolocalization of a plant glutathione peroxidase-like protein. Planta 219: 784-789 (2004).

Herbette S, Lenne C, Leblanc N, Julien JL, Drevet JR, Roeckel-Drevet P. Two GPX-like proteins from Lycopersicon esculentum and Helianthus annuus are antioxidant enzymes with phospholipid hydroperoxide glutathione peroxidase and thioredoxin peroxidase activities. Eur. J. Biochem. 269: 2414-2420 (2002).

Herbik A, Giritch A, Horstmann C, Becker R, Balzer HJ, Baumlein H, Stephan UW. Iron and copper nutrition-dependent changes in protein expression in a tomato wild type and the nicotianamine-free mutant chloronerva. Plant Physiol. 111: 533-540 (1996).

Herde O, Pena Cortes H, Wasternack C, Willmitzer L, Fisahn J. Electric signaling and pin2 gene expression on different abiotic stimuli depend on a distinct threshold level of endogenous abscisic acid in several abscisic acid-deficient tomato mutants. Plant Physiol. 119: 213-218 (1999).

Higgins R, Lockwood T, Holley S, Yalamanchili R, Stratmann JW. Changes in extracellular pH are neither required nor sufficient for activation of mitogen-activated protein kinases (MAPKs) in response to systemin and fusicoccin in tomato. Planta 225: 1535-1546 (2007).

Hildebrandt U, Schmelzer E, Bothe H. Expression of nitrate transporter genes in tomato colonized by an arbuscular mycorrhizal fungus. Physiol. Plant. 115: 125-136 (2002).

Hirschberg J. Carotenoid biosynthesis in flowering plants. Curr. Opin. Plant Biol. 4: 210-218 (2001).

Hoeberichts FA, Orzaez D, van der Plas LH, Woltering EJ. Changes in gene expression during programmed cell death in tomato cell suspensions. Plant Mol. Biol. 45: 641-654 (2001).

Hoeberichts FA, ten Have A, Woltering EJ. A tomato metacaspase gene is upregulated during programmed cell death in Botrytis cinerea-infected leaves. Planta 217: 517-522 (2003).

Hoerlein G. Glufosinate (phosphinothricin), a natural amino acid with unexpected herbicidal properties. Rev. Environ. Contam. Toxicol. 138: 73-145 (1994).

Hofmann MG, Sinha AK, Proels RK, Roitsch T. Cloning and characterization of a novel LpWRKY1 transcription factor in tomato. Plant Physiol. Biochem. 46: 533-540 (2008).

Holbrook NM, Shashidhar VR, James RA, Munns R. Stomatal control in tomato with ABA-deficient roots: response of grafted plants to soil drying. J. Exp. Bot. 53: 1503-1514 (2002).

Holley SR, Yalamanchili RD, Moura DS, Ryan CA, Stratmann JW. Convergence of signaling pathways induced by systemin, oligosaccharide elicitors, and ultraviolet-B radiation at the level of mitogen-activated protein kinases in Lycopersicon peruvianum suspension-cultured cells. Plant Physiol. 132: 1728-1738 (2003).

Holton N, Cano-Delgado A, Harrison K, Montoya T, Chory J, Bishop GJ. Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. Plant Cell 19: 1709-1717 (2007).

Honee G, Buitink J, Jabs T, De Kloe J, Sijbolts F, Apotheker M, Weide R, Sijen T, Stuiver M, De Wit PJ. Induction of defense-related responses in Cf9 tomato cells by the AVR9 elicitor peptide of Cladosporium fulvum is developmentally regulated. Plant Physiol. 117: 809-820 (1998).

Hong JK, Choi DS, Kim SH, Yi SY, Kim YJ, Hwang BK. Distinct roles of the pepper pathogen-induced membrane protein gene CaPIMP1 in bacterial disease resistance and oomycete disease susceptibility. Planta 228: 485-497 (2008).

Hong JK, Hwang BK. Induction of enhanced disease resistance and oxidative stress tolerance by overexpression of pepper basic PR-1 gene in Arabidopsis. Physiol. Plant. 124: 267-277 (2005).

Hong JK, Hwang BK. Promoter activation of pepper class II basic chitinase gene, CAChi2, and enhanced bacterial disease resistance and osmotic stress tolerance in the CAChi2-overexpressing Arabidopsis. Planta 223: 433-448 (2006).

Hong SB, Sexton R, Tucker ML. Analysis of gene promoters for two tomato polygalacturonases expressed in abscission zones and the stigma. Plant Physiol. 123: 869-882 (2000).

Hong Z, Ueguchi-Tanaka M, Shimizu-Sato S, Inukai Y, Fujioka S, Shimada Y, Takatsuto S, Agetsuma M, Yoshida S, Watanabe Y, Uozu S, Kitano H, Ashikari M, Matsuoka M. Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Plant J. 32: 495-508 (2002).

Hopkins MT, Lampi Y, Wang TW, Liu Z, Thompson JE. eIF5A is involved in pathogen-induced cell death and development of disease symptoms in Arabidopsis thaliana. Plant Physiol. 148: 479-489 (2008).

Hossain MM, Sultana F, Kubota M, Koyama H, Hyakumachi M. The plant growth-promoting fungus Penicillium simplicissimum GP17-2 induces resistance in Arabidopsis thaliana by activation of multiple defense signals. Plant Cell Physiol. 48: 1724-1736 (2007).

Houterman PM, Ma L, van Ooijen G, de Vroomen MJ, Cornelissen BJ, Takken FL, Rep M. The effector protein Avr2 of the xylem-colonizing fungus Fusarium oxysporum activates the tomato resistance protein I-2 intracellularly. Plant J. 58: 970-978 (2009).

Hovav R, Chehanovsky N, Moy M, Jetter R, Schaffer AA. The identification of a gene (Cwp1), silenced during Solanum evolution, which causes cuticle microfissuring and dehydration when expressed in tomato fruit. Plant J. 52: 627-639 (2007).

Howarth JR, Fourcroy P, Davidian JC, Smith FW, Hawkesford MJ. Cloning of two contrasting high-affinity sulfate transporters from tomato induced by low sulfate and infection by the vascular pathogen Verticillium dahliae. Planta 218: 58-64 (2003).

Howe GA, Lee GI, Itoh A, Li L, DeRocher AE. Cytochrome P450-dependent metabolism of oxylipins in tomato. Cloning and expression of allene oxide synthase and fatty acid hydroperoxide lyase. Plant Physiol. 123: 711-724 (2000).

Hsieh TH, Lee JT, Charng YY, Chan MT. Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stress. Plant Physiol. 130: 618-626 (2002).

Hsieh TH, Lee JT, Yang PT, Chiu LH, Charng YY, Wang YC, Chan MT. Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. Plant Physiol. 129: 1086-1094 (2002).

Hu G, deHart AK, Li Y, Ustach C, Handley V, Navarre R, Hwang CF, Aegerter BJ, Williamson VM, Baker B. EDS1 in tomato is required for resistance mediated by TIR-class R genes and the receptor-like R gene Ve. Plant J. 42: 376-391 (2005).

Huai Q, Xia Y, Chen Y, Callahan B, Li N, Ke H. Crystal structures of 1-aminocyclopropane-1-carboxylate (ACC) synthase in complex with aminoethoxyvinylglycine and pyridoxal-5'-phosphate provide new insight into catalytic mechanisms. J. Biol. Chem. 276: 38210-38216 (2001).

Huang J, Cardoza YJ, Schmelz EA, Raina R, Engelberth J, Tumlinson JH. Differential volatile emissions and salicylic acid levels from tobacco plants in response to different strains of Pseudomonas syringae. Planta 217: 767-775 (2003).

Huang S, van der Vossen EA, Kuang H, Vleeshouwers VG, Zhang N, Borm TJ, van Eck HJ, Baker B, Jacobsen E, Visser RG. Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. Plant J. 42: 251-261 (2005).

Huang W, Ma X, Wang Q, Gao Y, Xue Y, Niu X, Yu G, Liu Y. Significant improvement of stress tolerance in tobacco plants by overexpressing a stress-responsive aldehyde dehydrogenase gene from maize (Zea mays). Plant Mol. Biol. 68: 451-463 (2008).

Huang Z, Yeakley JM, Garcia EW, Holdridge JD, Fan JB, Whitham SA. Salicylic acid-dependent expression of host genes in compatible Arabidopsis-virus interactions. Plant Physiol. 137: 1147-1159 (2005).

Huang Z, Zhang Z, Zhang X, Zhang H, Huang D, Huang R. Tomato TERF1 modulates ethylene response and enhances osmotic stress tolerance by activating expression of downstream genes. FEBS Lett. 573: 110-116 (2004).

Huanosto Magana R, Adamowicz S, Pages L. Diel changes in nitrogen and carbon resource status and use for growth in young plants of tomato (Solanum lycopersicum). Ann. Bot. (Lond.) 103: 1025-1037 (2009).

Huber DJ, O'Donoghue EM. Polyuronides in avocado (Persea americana) and tomato (Lycopersicon esculentum) fruits exhibit markedly different patterns of molecular weight downshifts during ripening. Plant Physiol. 102: 473-480 (1993).

Hunt PW, Watts RA, Trevaskis B, Llewelyn DJ, Burnell J, Dennis ES, Peacock WJ. Expression and evolution of functionally distinct haemoglobin genes in plants. Plant Mol. Biol. 47: 677-692 (2001).

Hunt R, Colasanti RL. Self-assembling plants and integration across ecological scales. Ann. Bot. (Lond.) 99: 1023-1034 (2007).

Husaineid SS, Kok RA, Schreuder ME, Hanumappa M, Cordonnier-Pratt MM, Pratt LH, van der Plas LH, van der Krol AR. Overexpression of homologous phytochrome genes in tomato: exploring the limits in photoperception. J. Exp. Bot. 58: 615-626 (2007).

Hussain A, Black CR, Taylor IB, Roberts JA. Does an antagonistic relationship between ABA and ethylene mediate shoot growth when tomato (Lycopersicon esculentum Mill.) plants encounter compacted soil? Plant Cell Environ. 23: 1217-1226 (2000).

Hussain A, Black CR, Taylor IB, Roberts JA. Soil compaction. A role for ethylene in regulating leaf expansion and shoot growth in tomato? Plant Physiol. 121: 1227-1238 (1999).

Hwang CF, Williamson VM. Leucine-rich repeat-mediated intramolecular interactions in nematode recognition and cell death signaling by the tomato resistance protein Mi. Plant J. 34: 585-593 (2003).

Igarashi Y, Yoshiba Y, Takeshita T, Nomura S, Otomo J, Yamaguchi-Shinozaki K, Shinozaki K. Molecular cloning and characterization of a cDNA encoding proline transporter in rice. Plant Cell Physiol. 41: 750-756 (2000).

Igasaki T, Watanabe Y, Nishiguchi M, Kotoda N. The FLOWERING LOCUS T/TERMINAL FLOWER 1 family in Lombardy poplar. Plant Cell Physiol. 49: 291-300 (2008).

Iijima Y, Nakamura Y, Ogata Y, Tanaka K, Sakurai N, Suda K, Suzuki T, Suzuki H, Okazaki K, Kitayama M, Kanaya S, Aoki K, Shibata D. Metabolite annotations based on the integration of mass spectral information. Plant J. 54: 949-962 (2008).

Innes RW. Genetic dissection of R gene signal transduction pathways. Curr. Opin. Plant Biol. 1: 299-304 (1998).

Inouhe M, Ito R, Ito S, Sasada N, Tohoyama H, Joho M. Azuki bean cells are hypersensitive to cadmium and do not synthesize phytochelatins. Plant Physiol. 123: 1029-1036 (2000).

Ioannidi E, Kalamaki MS, Engineer C, Pateraki I, Alexandrou D, Mellidou I, Giovannonni J, Kanellis AK. Expression profiling of ascorbic acid-related genes during tomato fruit development and ripening and in response to stress conditions. J. Exp. Bot. 60: 663-678 (2009).

Isaacson T, Ohad I, Beyer P, Hirschberg J. Analysis in vitro of the enzyme CRTISO establishes a poly-cis-carotenoid biosynthesis pathway in plants. Plant Physiol. 136: 4246-4255 (2004).

Isaacson T, Ronen G, Zamir D, Hirschberg J. Cloning of tangerine from tomato reveals a carotenoid isomerase essential for the production of beta-carotene and xanthophylls in plants. Plant Cell 14: 333-342 (2002).

Ishimaru M, Smith DL, Mort AJ, Gross KC. Enzymatic activity and substrate specificity of recombinant tomato beta-galactosidases 4 and 5. Planta 229: 447-456 (2009).

Itai A, Ishihara K, Bewley JD. Characterization of expression, and cloning, of beta-D-xylosidase and alpha-L-arabinofuranosidase in developing and ripening tomato (Lycopersicon esculentum Mill.) fruit. J. Exp. Bot. 54: 2615-2622 (2003).

Ito S, Eto T, Tanaka S, Yamauchi N, Takahara H, Ikeda T. Tomatidine and lycotetraose, hydrolysis products of alpha-tomatine by Fusarium oxysporum tomatinase, suppress induced defense responses in tomato cells. FEBS Lett. 571: 31-34 (2004).

Ito S, Ihara T, Tamura H, Tanaka S, Ikeda T, Kajihara H, Dissanayake C, Abdel-Motaal FF, El-Sayed MA. alpha-Tomatine, the major saponin in tomato, induces programmed cell death mediated by reactive oxygen species in the fungal pathogen Fusarium oxysporum. FEBS Lett. 581: 3217-3222 (2007).

Ito Y, Kitagawa M, Ihashi N, Yabe K, Kimbara J, Yasuda J, Ito H, Inakuma T, Hiroi S, Kasumi T. DNA-binding specificity, transcriptional activation potential, and the rin mutation effect for the tomato fruit-ripening regulator RIN. Plant J. 55: 212-223 (2008).

Ivanchenko MG, Coffeen WC, Lomax TL, Dubrovsky JG. Mutations in the Diageotropica (Dgt) gene uncouple patterned cell division during lateral root initiation from proliferative cell division in the pericycle. Plant J. 46: 436-447 (2006).

Jacinto T, Farmer EE, Ryan CA. Purification of potato leaf plasma membrane protein pp34, a protein phosphorylated in response to oligogalacturonide signals for defense and development. Plant Physiol. 103: 1393-1397 (1993).

Jackson SD, Sonnewald U, Willmitzer L. Cloning and expression analysis of beta-isopropylmalate dehydrogenase from potato. Mol. Gen. Genet. 236: 309-314 (1993).

Jacobsen SE, Olszewski NE. Gibberellins regulate the abundance of RNAs with sequence similarity to proteinase inhibitors, dioxygenases and dehydrogenases. Planta 198: 78-86 (1996).

Jagadeeswaran G, Saini A, Sunkar R. Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta 229: 1009-1014 (2009).

Jager CE, Symons GM, Nomura T, Yamada Y, Smith JJ, Yamaguchi S, Kamiya Y, Weller JL, Yokota T, Reid JB. Characterization of two brassinosteroid C-6 oxidase genes in pea. Plant Physiol. 143: 1894-1904 (2007).

Jaglo KR, Kleff S, Amundsen KL, Zhang X, Haake V, Zhang JZ, Deits T, Thomashow MF. Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species. Plant Physiol. 127: 910-917 (2001).

Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P. FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana. FEBS Lett. 577: 528-534 (2004).

Jambunathan N, McNellis TW. Regulation of Arabidopsis COPINE 1 gene expression in response to pathogens and abiotic stimuli. Plant Physiol. 132: 1370-1381 (2003).

Jamir Y, Guo M, Oh HS, Petnicki-Ocwieja T, Chen S, Tang X, Dickman MB, Collmer A, R Alfano J. Identification of Pseudomonas syringae type III effectors that can suppress programmed cell death in plants and yeast. Plant J. 37: 554-565 (2004).

Janjusevic R, Abramovitch RB, Martin GB, Stebbins CE. A bacterial inhibitor of host programmed cell death defenses is an E3 ubiquitin ligase. Science 311: 222-226 (2006).

Jansen RC, Stam P. High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455 (1994).

Janssen BJ, Lund L, Sinha N. Overexpression of a homeobox gene, LeT6, reveals indeterminate features in the tomato compound leaf. Plant Physiol. 117: 771-786 (1998).

Jarai G, Truong HN, Daniel-Vedele F, Marzluf GA. NIT2, the nitrogen regulatory protein of Neurospora crassa, binds upstream of nia, the tomato nitrate reductase gene, in vitro. Curr. Genet. 21: 37-41 (1992).

Jarvis MC, Briggs SPH, Knox JP. Intercellular adhesion and cell separation in plants. Plant Cell Environ. 26: 977-989 (2003).

Jasinski S, Kaur H, Tattersall A, Tsiantis M. Negative regulation of KNOX expression in tomato leaves. Planta 226: 1255-1263 (2007).

Jasinski S, Tattersall A, Piazza P, Hay A, Martinez-Garcia JF, Schmitz G, Theres K, McCormick S, Tsiantis M. PROCERA encodes a DELLA protein that mediates control of dissected leaf form in tomato. Plant J. 56: 603-612 (2008).

Jenkins T, Blunden G, Wu Y, Hankins SD, Gabrielsen BO. Are the reductions in nematode attack on plants treated with seaweed extracts the result of stimulation of the formaldehyde cycle? Acta Biol. Hung. 49: 421-427 (1998).

Ji W, Benedict CR, Foster MA. Seasonal variations in rubber biosynthesis, 3-hydroxy-3-methylglutaryl-coenzyme A reductase, and rubber transferase activities in Parthenium argentatum in the Chihuahuan desert. Plant Physiol. 103: 535-542 (1993).

Jia W, Davies WJ. Modification of leaf apoplastic pH in relation to stomatal sensitivity to root-sourced abscisic acid signals. Plant Physiol. 143: 68-77 (2007).

Jia Y, Martin GB. Rapid transcript accumulation of pathogenesis-related genes during an incompatible interaction in bacterial speck disease-resistant tomato plants. Plant Mol. Biol. 40: 455-465 (1999).

Jiang CZ, Lu F, Imsabai W, Meir S, Reid MS. Silencing polygalacturonase expression inhibits tomato petiole abscission. J. Exp. Bot. 59: 973-979 (2008).

Jimenez A, Creissen G, Kular B, Firmin J, Robinson S, Verhoeyen M, Mullineaux P. Changes in oxidative processes and components of the antioxidant system during tomato fruit ripening. Planta 214: 751-758 (2002).

Jin CW, Du ST, Chen WW, Li GX, Zhang YS, Zheng SJ. Elevated carbon dioxide improves plant iron nutrition through enhancing the iron-deficiency-induced responses under iron-limited conditions in tomato. Plant Physiol. 150: 272-280 (2009).

Jin CW, Du ST, Zhang YS, Lin XY, Tang CX. Differential regulatory role of nitric oxide in mediating nitrate reductase activity in roots of tomato (Solanum lycocarpum). Ann. Bot. (Lond.) 104: 9-17 (2009).

Jin S, Chen CCS, Plant AL. Regulation by ABA of osmotic-stress-induced changes in protein synthesis in tomato roots. Plant Cell Environ. 23: 51-60 (2000).

Johnson HE, Broadhurst D, Goodacre R, Smith AR. Metabolic fingerprinting of salt-stressed tomatoes. Phytochemistry 62: 919-928 (2003).

Jolivet P, Gans P, Triantaphylides C. Determination of glycolic acid level in higher plants during photorespiration by stable isotope dilution mass spectrometry with double-labeling experiments. Anal. Biochem. 147: 86-91 (1985).

Jones AM, Thomas V, Bennett MH, Mansfield J, Grant M. Modifications to the Arabidopsis defense proteome occur prior to significant transcriptional change in response to inoculation with Pseudomonas syringae. Plant Physiol. 142: 1603-1620 (2006).

Jones B, Frasse P, Olmos E, Zegzouti H, Li ZG, Latche A, Pech JC, Bouzayen M. Down-regulation of DR12, an auxin-response-factor homolog, in the tomato results in a pleiotropic phenotype including dark green and blotchy ripening fruit. Plant J. 32: 603-613 (2002).

Jones TL, Tucker DE, Ort DR. Chilling delays circadian pattern of sucrose phosphate synthase and nitrate reductase activity in tomato. Plant Physiol. 118: 149-158 (1998).

Jorda L, Conejero V, Vera P. Characterization of P69E and P69F, two differentially regulated genes encoding new members of the subtilisin-like proteinase family from tomato plants. Plant Physiol. 122: 67-74 (2000).

Jorda L, Vera P. Local and systemic induction of two defense-related subtilisin-like protease promoters in transgenic Arabidopsis plants. Luciferin induction of PR gene expression. Plant Physiol. 124: 1049-1058 (2000).

Jordan CV, Shen W, Hanley-Bowdoin LK, Robertson DN. Geminivirus-induced gene silencing of the tobacco retinoblastoma-related gene results in cell death and altered development. Plant Mol. Biol. 65: 163-175 (2007).

Josse EM, Simkin AJ, Gaffe J, Laboure AM, Kuntz M, Carol P. A plastid terminal oxidase associated with carotenoid desaturation during chromoplast differentiation. Plant Physiol. 123: 1427-1436 (2000).

Joubes J, Phan TH, Just D, Rothan C, Bergounioux C, Raymond P, Chevalier C. Molecular and biochemical characterization of the involvement of cyclin-dependent kinase A during the early development of tomato fruit. Plant Physiol. 121: 857-869 (1999).

Journot-Catalino N, Somssich IE, Roby D, Kroj T. The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana. Plant Cell 18: 3289-3302 (2006).

Jun SS, Kim JM, Lee CB. A comparative study on the effect of chilling treatment in the light and in the dark on subsequent photosynthesis in cucumber. Aust. J. Plant Physiol. 28: 489-496 (2001).

Jung HW, Kim KD, Hwang BK. Identification of pathogen-responsive regions in the promoter of a pepper lipid transfer protein gene (CALTPI) and the enhanced resistance of the CALTPI transgenic Arabidopsis against pathogen and environmental stresses. Planta 221: 361-373 (2005).

Kadyrzhanova DK, Vlachonasios KE, Ververidis P, Dilley DR. Molecular cloning of a novel heat induced/chilling tolerance related cDNA in tomato fruit by use of mRNA differential display. Plant Mol. Biol. 36: 885-895 (1998).

Kagale S, Divi UK, Krochko JE, Keller WA, Krishna P. Brassinosteroid confers tolerance in Arabidopsis thaliana and Brassica napus to a range of abiotic stresses. Planta 225: 353-364 (2007).

Kahn TL, Fender SE, Bray EA, O'Connell MA. Characterization of expression of drought- and abscisic acid-regulated tomato genes in the drought-resistant species Lycopersicon pennellii. Plant Physiol. 103: 597-605 (1993).

Kakani VG, Prasad PVV, Craufurd PQ, Wheeler TR. Response of in vitro pollen germination and pollen tube growth of groundnut (Arachis hypogaea L.) genotypes to temperature. Plant Cell Environ. 25: 1651-1661 (2002).

Kalaitzis P, Solomos T, Tucker ML. Three different polygalacturonases are expressed in tomato leaf and flower abscission, each with a different temporal expression pattern. Plant Physiol. 113: 1303-1308 (1997).

Kalamaki MS, Alexandrou D, Lazari D, Merkouropoulos G, Fotopoulos V, Pateraki I, Aggelis A, Carrillo-Lopez A, Rubio-Cabetas MJ, Kanellis AK. Over-expression of a tomato N-acetyl-L-glutamate synthase gene (SlNAGS1) in Arabidopsis thaliana results in high ornithine levels and increased tolerance in salt and drought stresses. J. Exp. Bot. 60: 1859-1871 (2009).

Kalifa Y, Perlson E, Gilad A, Konrad Z, Scolnik PA, Bar-Zvi D. Over-expression of the water and salt stress-regulated Asr1 gene confers an increased salt tolerance. Plant Cell Environ. 27: 1459-1468 (2004).

Kammerer B, Fischer K, Hilpert B, Schubert S, Gutensohn M, Weber A, Flugge UI. Molecular characterization of a carbon transporter in plastids from heterotrophic tissues: the glucose 6-phosphate/phosphate antiporter. Plant Cell 10: 105-117 (1998).

Kanayama Y, Dai N, Granot D, Petreikov M, Schaffer A, Bennett AB. Divergent fructokinase genes are differentially expressed in tomato. Plant Physiol. 113: 1379-1384 (1997).

Kandan A, Commare RR, Nandakumar R, Ramiah M, Raguchander T, Samiyappan R. Induction of phenylpropanoid metabolism by Pseudomonas fluorescens against tomato spotted wilt virus in tomato. Folia Microbiol. (Praha) 47: 121-129 (2002).

Kandel-Kfir M, Damari-Weissler H, German MA, Gidoni D, Mett A, Belausov E, Petreikov M, Adir N, Granot D. Two newly identified membrane-associated and plastidic tomato HXKs: characteristics, predicted structure and intracellular localization. Planta 224: 1341-1352 (2006).

Kang L, Wang YS, Uppalapati SR, Wang K, Tang Y, Vadapalli V, Venables BJ, Chapman KD, Blancaflor EB, Mysore KS. Overexpression of a fatty acid amide hydrolase compromises innate immunity in Arabidopsis. Plant J. 56: 336-349 (2008).

Kant MR, Ament K, Sabelis MW, Haring MA, Schuurink RC. Differential timing of spider mite-induced direct and indirect defenses in tomato plants. Plant Physiol. 135: 483-495 (2004).

Kaothien P, Ok SH, Shuai B, Wengier D, Cotter R, Kelley D, Kiriakopolos S, Muschietti J, McCormick S. Kinase partner protein interacts with the LePRK1 and LePRK2 receptor kinases and plays a role in polarized pollen tube growth. Plant J. 42: 492-503 (2005).

Karbulkova J, Schreiber L, Macek P, Santrucek J. Differences between water permeability of astomatous and stomatous cuticular membranes: effects of air humidity in two species of contrasting drought-resistance strategy. J. Exp. Bot. 59: 3987-3995 (2008).

Kars I, Krooshof GH, Wagemakers L, Joosten R, Benen JA, van Kan JA. Necrotizing activity of five Botrytis cinerea endopolygalacturonases produced in Pichia pastoris. Plant J. 43: 213-225 (2005).

Katsuhara M, Otsuka T, Ezaki B. Salt stress-induced lipid peroxidation is reduced by glutathione S-transferase, but this reduction of lipid peroxides is not enough for a recovery of root growth in Arabidopsis. Plant Sci. 169: 369-373 (2005).

Katz E, Fon M, Lee YJ, Phinney BS, Sadka A, Blumwald E. The citrus fruit proteome: insights into citrus fruit metabolism. Planta 226: 989-1005 (2007).

Katz YS, Galili G, Amir R. Regulatory role of cystathionine-gamma-synthase and de novo synthesis of methionine in ethylene production during tomato fruit ripening. Plant Mol. Biol. 61: 255-268 (2006).

Kausch KD, Handa AK. Molecular cloning of a ripening-specific lipoxygenase and its expression during wild-type and mutant tomato fruit development. Plant Physiol. 113: 1041-1050 (1997).

Kavroulakis N, Ntougias S, Zervakis GI, Ehaliotis C, Haralampidis K, Papadopoulou KK. Role of ethylene in the protection of tomato plants against soil-borne fungal pathogens conferred by an endophytic Fusarium solani strain. J. Exp. Bot. 58: 3853-3864 (2007).

Kavroulakis N, Papadopoulou KK, Ntougias S, Zervakis GI, Ehaliotis C. Cytological and other aspects of pathogenesis-related gene expression in tomato plants grown on a suppressive compost. Ann. Bot. (Lond.) 98: 555-564 (2006).

Kawabata S, Sasaki H, Sakiyama R. Role of transpiration from fruits in phloem transport and fruit growth in tomato fruits. Physiol. Plant. 124: 371-380 (2005).

Kawamura Y, Takenaka S, Hase S, Kubota M, Ichinose Y, Kanayama Y, Nakaho K, Klessig DF, Takahashi H. Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1. Plant Cell Physiol. 50: 924-934 (2009).

Keller T, Abbott J, Moritz T, Doerner P. Arabidopsis REGULATOR OF AXILLARY MERISTEMS1 controls a leaf axil stem cell niche and modulates vegetative development. Plant Cell 18: 598-611 (2006).

Kellogg EA. Who's related to whom? Recent results from molecular systematic studies. Curr. Opin. Plant Biol. 1: 149-158 (1998).

Kerstiens G. Water transport in plant cuticles: an update. J. Exp. Bot. 57: 2493-2499 (2006).

Kertesz MA, Mirleau P. The role of soil microbes in plant sulphur nutrition. J. Exp. Bot. 55: 1939-1945 (2004).

Kevany BM, Tieman DM, Taylor MG, Cin VD, Klee HJ. Ethylene receptor degradation controls the timing of ripening in tomato fruit. Plant J. 51: 458-467 (2007).

Kiggundu A, Goulet MC, Goulet C, Dubuc JF, Rivard D, Benchabane M, Pepin G, Vyver C, Kunert K, Michaud D. Modulating the proteinase inhibitory profile of a plant cystatin by single mutations at positively selected amino acid sites. Plant J. 48: 403-413 (2006).

Kim HJ, Lynch JP, Brown KM. Ethylene insensitivity impedes a subset of responses to phosphorus deficiency in tomato and petunia. Plant Cell Environ. 31: 1744-1755 (2008).

Kim JG, Li X, Roden JA, Taylor KW, Aakre CD, Su B, Lalonde S, Kirik A, Chen Y, Baranage G, McLane H, Martin GB, Mudgett MB. Xanthomonas T3S effector XopN suppresses PAMP-triggered immunity and interacts with a tomato atypical receptor-like kinase and TFT1. Plant Cell 21: 1305-1323 (2009).

Kim JG, Taylor KW, Hotson A, Keegan M, Schmelz EA, Mudgett MB. XopD SUMO protease affects host transcription, promotes pathogen growth, and delays symptom development in Xanthomonas-infected tomato leaves. Plant Cell 20: 1915-1929 (2008).

Kim SH, Grierson D. Subcellular localisation and silencing of ripening-associated membrane protein (TRAMP) in tomato Lycopersicon esculentum Mill.. Plant Sci. 169: 1022-1029 (2005).

Kim TW, Chang SC, Lee JS, Hwang B, Takatsuto S, Yokota T, Kim SK. Cytochrome P450-catalyzed brassinosteroid pathway activation through synthesis of castasterone and brassinolide in Phaseolus vulgaris. Phytochemistry 65: 679-689 (2004).

Kim TW, Chang SC, Lee JS, Takatsuto S, Yokota T, Kim SK. Novel biosynthetic pathway of castasterone from cholesterol in tomato. Plant Physiol. 135: 1231-1242 (2004).

Kitagawa M, Ito H, Shiina T, Nakamura N, Inakuma T, Kasumi T, Ishiguro Y, Yabe K, Ito Y. Characterization of tomato fruit ripening and analysis of gene expression in F-1 hybrids of the ripening inhibitor (rin) mutant. Physiol. Plant. 123: 331-338 (2005).

Kiyosue T, Ryan CA. A novel gene of tomato preferentially expressed in fruit encodes a protein with a Ca2+-dependent lipid-binding domain. Plant Mol. Biol. 35: 969-972 (1997).

Kjemtrup S, Sampson KS, Peele CG, Nguyen LV, Conkling MA, Thompson WF, Robertson D. Gene silencing from plant DNA carried by a Geminivirus. Plant J. 14: 91-100 (1998).

Klages K, Donnison H, Wunsche J, Boldingh H. Diurnal changes in non-structural carbohydrates in leaves, phloem exudate and fruit in 'Braeburn' apple. Aust. J. Plant Physiol. 28: 131-139 (2001).

Klann EM, Chetelat RT, Bennett AB. Expression of acid invertase gene controls sugar composition in tomato (Lycopersicon) fruit. Plant Physiol. 103: 863-870 (1993).

Klann EM, Hall B, Bennett AB. Antisense acid invertase (TIV1) gene alters soluble sugar composition and size in transgenic tomato fruit. Plant Physiol. 112: 1321-1330 (1996).

Klatte M, Schuler M, Wirtz M, Fink-Straube C, Hell R, Bauer P. The analysis of Arabidopsis nicotianamine synthase mutants reveals functions for nicotianamine in seed iron loading and iron deficiency responses. Plant Physiol. 150: 257-271 (2009).

Klee HJ. Ripening physiology of fruit from transgenic tomato (Lycopersicon esculentum) plants with reduced ethylene synthesis. Plant Physiol. 102: 911-916 (1993).

Klee HJ. Control of ethylene-mediated processes in tomato at the level of receptors. J. Exp. Bot. 53: 2057-2063 (2002).

Knapp S. Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae. J. Exp. Bot. 53: 2001-2022 (2002).

Knapp S, Bohs L, Nee M, Spooner DM. Solanaceae - a model for linking genomics with biodiversity. Comp. Funct. Genomics 5: 285-291 (2004).

Knieb E, Salomon M, Rudiger W. Tissue-specific and subcellular localization of phototropin determined by immuno-blotting. Planta 218: 843-851 (2004).

Kocal N, Sonnewald U, Sonnewald S. Cell wall-bound invertase limits sucrose export and is involved in symptom development and inhibition of photosynthesis during compatible interaction between tomato and Xanthomonas campestris pv. vesicatoria. Plant Physiol. 148: 1523-1536 (2008).

Koch M, Vorwerk S, Masur C, Sharifi-Sirchi G, Olivieri N, Schlaich NL. A role for a flavin-containing mono-oxygenase in resistance against microbial pathogens in Arabidopsis. Plant J. 47: 629-639 (2006).

Kock M, Gross N, Stenzel I, Hause G. Phloem-specific expression of the wound-inducible ribonuclease LE from tomato (Lycopersicon esculentum cv. Lukullus). Planta 219: 233-242 (2004).

Kock M, Stenzel I, Zimmer A. Tissue-specific expression of tomato ribonuclease LX during phosphate starvation-induced root growth. J. Exp. Bot. 57: 3717-3726 (2006).

Kohler A, Schwindling S, Conrath U. Benzothiadiazole-induced priming for potentiated responses to pathogen infection, wounding, and infiltration of water into leaves requires the NPR1/NIM1 gene in Arabidopsis. Plant Physiol. 128: 1046-1056 (2002).

Koka CV, Cerny RE, Gardner RG, Noguchi T, Fujioka S, Takatsuto S, Yoshida S, Clouse SD. A putative role for the tomato genes DUMPY and CURL-3 in brassinosteroid biosynthesis and response. Plant Physiol. 122: 85-98 (2000).

Konrad Z, Bar-Zvi D. Synergism between the chaperone-like activity of the stress regulated ASR1 protein and the osmolyte glycine-betaine. Planta 227: 1213-1219 (2008).

Kooman-Gersmann M, Vogelsang R, Vossen P, van den Hooven HW, Mahe E, Honee G, de Wit PJ. Correlation between binding affinity and necrosis-inducing activity of mutant AVR9 peptide elicitors. Plant Physiol. 117: 609-618 (1998).

Kortstee AJ, Appeldoorn NJ, Oortwijn ME, Visser RG. Differences in regulation of carbohydrate metabolism during early fruit development between domesticated tomato and two wild relatives. Planta 226: 929-939 (2007).

Kosola KR, Bloom AJ. Methylammonium as a transport analog for ammonium in tomato (Lycopersicon esculentum L.). Plant Physiol. 105: 435-442 (1994).

Kotilainen M, Helariutta Y, Mehto M, Pollanen E, Albert VA, Elomaa P, Teeri TH. GEG participates in the regulation of cell and organ shape during corolla and carpel development in Gerbera hybrida. Plant Cell 11: 1093-1104 (1999).

Koussevitzky S, Ne'eman E, Harel E. Import of polyphenol oxidase by chloroplasts is enhanced by methyl jasmonate. Planta 219: 412-419 (2004).

Kovacs K, Zhang L, Linforth RS, Whittaker B, Hayes CJ, Fray RG. Redirection of carotenoid metabolism for the efficient production of taxadiene [taxa-4(5),11(12)-diene] in transgenic tomato fruit. Transgenic Res. 16: 121-126 (2007).

Kraft M, Kuglitsch R, Kwiatkowski J, Frank M, Grossmann K. Indole-3-acetic acid and auxin herbicides up-regulate 9-cis-epoxycarotenoid dioxygenase gene expression and abscisic acid accumulation in cleavers (Galium aparine): interaction with ethylene. J. Exp. Bot. 58: 1497-1503 (2007).

Krischke M, Loeffler C, Mueller MJ. Biosynthesis of 14,15-dehydro-12-oxo-phytodienoic acid and related cyclopentenones via the phytoprostane D(1) pathway. Phytochemistry 62: 351-358 (2003).

Kroumova AB, Xie Z, Wagner GJ. A pathway for the biosynthesis of straight and branched, odd- and even-length, medium-chain fatty acids in plants. Proc. Natl. Acad. Sci. U.S.A. 91: 11437-11441 (1994).

Kuang H, Wei F, Marano MR, Wirtz U, Wang X, Liu J, Shum WP, Zaborsky J, Tallon LJ, Rensink W, Lobst S, Zhang P, Tornqvist CE, Tek A, Bamberg J, Helgeson J, Fry W, You F, Luo MC, Jiang J, Robin Buell C, Baker B. The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. Plant J. 44: 37-51 (2005).

Kudoyarova GR, Vysotskaya LB, Cherkozyanova A, Dodd IC. Effect of partial rootzone drying on the concentration of zeatin-type cytokinins in tomato (Solanum lycopersicum L.) xylem sap and leaves. J. Exp. Bot. 58: 161-168 (2007).

Kuhn C, Franceschi VR, Schulz A, Lemoine R, Frommer WB. Macromolecular trafficking indicated by localization and turnover of sucrose transporters in enucleate sieve elements. Science 275: 1298-1300 (1997).

Kumar A, Silim SN, Okamoto M, Siddiqi MY, Glass AD. Differential expression of three members of the AMT1 gene family encoding putative high-affinity NH4+ transporters in roots of Oryza sativa subspecies indica. Plant Cell Environ. 26: 907-914 (2003).

Kumar V, Mills DJ, Anderson JD, Mattoo AK. An alternative agriculture system is defined by a distinct expression profile of select gene transcripts and proteins. Proc. Natl. Acad. Sci. U.S.A. 101: 10535-10540 (2004).

Kuzniak E, Sklodowska M. Compartment-specific role of the ascorbate-glutathione cycle in the response of tomato leaf cells to Botrytis cinerea infection. J. Exp. Bot. 56: 921-933 (2005).

Kuzniak E, Sklodowska M. Fungal pathogen-induced changes in the antioxidant systems of leaf peroxisomes from infected tomato plants. Planta 222: 192-200 (2005).

Kuzniak E, Sklodowska M. The effect of Botrytis cinerea infection on the antioxidant profile of mitochondria from tomato leaves. J. Exp. Bot. 55: 605-612 (2004).

Kwon SI, Koczan JM, Gassmann W. Two Arabidopsis srfr (suppressor of rps4-RLD) mutants exhibit avrRps4-specific disease resistance independent of RPS4. Plant J. 40: 366-375 (2004).

La Camera S, Geoffroy P, Samaha H, Ndiaye A, Rahim G, Legrand M, Heitz T. A pathogen-inducible patatin-like lipid acyl hydrolase facilitates fungal and bacterial host colonization in Arabidopsis. Plant J. 44: 810-825 (2005).

Lahmy S, Guilleminot J, Cheng CM, Bechtold N, Albert S, Pelletier G, Delseny M, Devic M. DOMINO1, a member of a small plant-specific gene family, encodes a protein essential for nuclear and nucleolar functions. Plant J. 39: 809-820 (2004).

Lanfermeijer FC, Dijkhuis J, Sturre MJ, de Haan P, Hille J. Cloning and characterization of the durable tomato mosaic virus resistance gene Tm-2(2) from Lycopersicon esculentum. Plant Mol. Biol. 52: 1037-1049 (2003).

Lanfermeijer FC, Warmink J, Hille J. The products of the broken Tm-2 and the durable Tm-2(2) resistance genes from tomato differ in four amino acids. J. Exp. Bot. 56: 2925-2933 (2005).

Langlois-Meurinne M, Gachon CM, Saindrenan P. Pathogen-responsive expression of glycosyltransferase genes UGT73B3 and UGT73B5 is necessary for resistance to Pseudomonas syringae pv tomato in Arabidopsis. Plant Physiol. 139: 1890-1901 (2005).

Laporte MM, Galagan JA, Shapiro JA, Boersig MR, Shewmaker CK, Sharkey TD. Sucrose-phosphate synthase activity and yield analysis of tomato plants transformed with maize sucrose-phosphate synthase. Planta 203: 253-259 (1997).

Lara-Nunez A, Sanchez-Nieto S, Luisa Anaya A, Cruz-Ortega R. Phytotoxic effects of Sicyos deppei (Cucurbitaceae) in germinating tomato seeds. Physiol. Plant. 136: 180-192 (2009).

Lasserre E, Bouquin T, Hernandez JA, Bull J, Pech JC, Balague C. Structure and expression of three genes encoding ACC oxidase homologs from melon (Cucumis melo L.). Mol. Gen. Genet. 251: 81-90 (1996).

Laughner B, Lawrence SD, Ferl RJ. Two tomato fruit homologs of 14-3-3 mammalian brain proteins. Plant Physiol. 105: 1457-1458 (1994).

Lauter FR, Ninnemann O, Bucher M, Riesmeier JW, Frommer WB. Preferential expression of an ammonium transporter and of two putative nitrate transporters in root hairs of tomato. Proc. Natl. Acad. Sci. U.S.A. 93: 8139-8144 (1996).

Lawrence SD, Cline K, Moore GA. Chromoplast-targeted proteins in tomato (Lycopersicon esculentum Mill.) fruit. Plant Physiol. 102: 789-794 (1993).

Leclercq J, Adams-Phillips LC, Zegzouti H, Jones B, Latche A, Giovannoni JJ, Pech JC, Bouzayen M. LeCTR1, a tomato CTR1-like gene, demonstrates ethylene signaling ability in Arabidopsis and novel expression patterns in tomato. Plant Physiol. 130: 1132-1142 (2002).

Leclercq J, Ranty B, Sanchez-Ballesta MT, Li Z, Jones B, Jauneau A, Pech JC, Latche A, Ranjeva R, Bouzayen M. Molecular and biochemical characterization of LeCRK1, a ripening-associated tomato CDPK-related kinase. J. Exp. Bot. 56: 25-35 (2005).

Lee GI, Howe GA. The tomato mutant spr1 is defective in systemin perception and the production of a systemic wound signal for defense gene expression. Plant J. 33: 567-576 (2003).

Lee J, Parthier B, Lobler M. Jasmonate signalling can be uncoupled from abscisic acid signalling in barley: identification of jasmonate-regulated transcripts which are not induced by abscisic acid. Planta 199: 625-632 (1996).

Lee JH, Hong JP, Oh SK, Lee S, Choi D, Kim WT. The ethylene-responsive factor like protein 1 (CaERFLP1) of hot pepper (Capsicum annuum L.) interacts in vitro with both GCC and DRE/CRT sequences with different binding affinities: possible biological roles of CaERFLP1 in response to pathogen … Plant Mol. Biol. 55: 61-81 (2004).

Lee JH, Kim DM, Lee JH, Kim J, Bang JW, Kim WT, Pai HS. Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus. Planta 222: 211-224 (2005).

Lee JH, Kim WT. Molecular and biochemical characterization of VR-EILs encoding mung bean ETHYLENE INSENSITIVE3-LIKE proteins. Plant Physiol. 132: 1475-1488 (2003).

Lee JT, Prasad V, Yang PT, Wu JF, Ho THD, Charng YY, Chan MT. Expression of Arabidopsis CBF1 regulated by an ABA/stress inducible promoter in transgenic tomato confers stress tolerance without affecting yield. Plant Cell Environ. 26: 1181-1190 (2003).

Lee OS, Lee B, Park N, Koo JC, Kim YH, Prasad D T, Karigar C, Chun HJ, Jeong BR, Kim DH, Nam J, Yun JG, Kwak SS, Cho MJ, Yun DJ. Pn-AMPs, the hevein-like proteins from Pharbitis nil confers disease resistance against phytopathogenic fungi in tomato, Lycopersicum esculentum. Phytochemistry 62: 1073-1079 (2003).

Lee S, Choi H, Suh S, Doo IS, Oh KY, Jeong Choi E, Schroeder Taylor AT, Low PS, Lee Y. Oligogalacturonic acid and chitosan reduce stomatal aperture by inducing the evolution of reactive oxygen species from guard cells of tomato and Commelina communis. Plant Physiol. 121: 147-152 (1999).

Lee SC, Choi HW, Hwang IS, Choi DS, Hwang BK. Functional roles of the pepper pathogen-induced bZIP transcription factor, CAbZIP1, in enhanced resistance to pathogen infection and environmental stresses. Planta 224: 1209-1225 (2006).

Lee SC, Hwang BK. CASAR82A, a pathogen-induced pepper SAR8.2, exhibits an antifungal activity and its overexpression enhances disease resistance and stress tolerance. Plant Mol. Biol. 61: 95-109 (2006).

Lee SC, Hwang IS, Choi HW, Hwang BK. Involvement of the pepper antimicrobial protein CaAMP1 gene in broad spectrum disease resistance. Plant Physiol. 148: 1004-1020 (2008).

Lee SC, Kim SH, An SH, Yi SY, Hwang BK. Identification and functional expression of the pepper pathogen-induced gene, CAPIP2, involved in disease resistance and drought and salt stress tolerance. Plant Mol. Biol. 62: 151-164 (2006).

Lee SC, Kim YJ, Hwang BK. A pathogen-induced chitin-binding protein gene from pepper: its isolation and differential expression in pepper tissues treated with pathogens, ethephon, methyl jasmonate or wounding. Plant Cell Physiol. 42: 1321-1330 (2001).

Lefebvre B, Arango M, Oufattole M, Crouzet J, Purnelle B, Boutry M. Identification of a Nicotiana plumbaginifolia plasma membrane H(+)-ATPase gene expressed in the pollen tube. Plant Mol. Biol. 58: 775-787 (2005).

Lehmann K, Hause B, Altmann D, Kock M. Tomato ribonuclease LX with the functional endoplasmic reticulum retention motif HDEF is expressed during programmed cell death processes, including xylem differentiation, germination, and senescence. Plant Physiol. 127: 436-449 (2001).

Leide J, Hildebrandt U, Reussing K, Riederer M, Vogg G. The developmental pattern of tomato fruit wax accumulation and its impact on cuticular transpiration barrier properties: effects of a deficiency in a betaketoacyl-CoA synthase (LeCER6). Plant Physiol. 144: 1667-1679 (2007).

Leitner-Dagan Y, Ovadis M, Shklarman E, Elad Y, Rav David D, Vainstein A. Expression and functional analyses of the plastid lipid-associated protein CHRC suggest its role in chromoplastogenesis and stress. Plant Physiol. 142: 233-244 (2006).

Leitner-Dagan Y, Ovadis M, Zuker A, Shklarman E, Ohad I, Tzfira T, Vainstein A. CHRD, a plant member of the evolutionarily conserved YjgF family, influences photosynthesis and chromoplastogenesis. Planta 225: 89-102 (2006).

Lelivelt CL, McCabe MS, Newell CA, Desnoo CB, van Dun KM, Birch-Machin I, Gray JC, Mills KH, Nugent JM. Stable plastid transformation in lettuce (Lactuca sativa L.). Plant Mol. Biol. 58: 763-774 (2005).

Lemaire-Chamley M, Petit J, Garcia V, Just D, Baldet P, Germain V, Fagard M, Mouassite M, Cheniclet C, Rothan C. Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato. Plant Physiol. 139: 750-769 (2005).

LeNoble ME, Spollen WG, Sharp RE. Maintenance of shoot growth by endogenous ABA: genetic assessment of the involvement of ethylene suppression. J. Exp. Bot. 55: 237-245 (2004).

Leon-Kloosterziel KM, Verhagen BW, Keurentjes JJ, Van Pelt JA, Rep M, Van Loon LC, Pieterse CM. Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Mol. Biol. 57: 731-748 (2005).

Lers A, Khalchitski A, Lomaniec E, Burd S, Green PJ. Senescence-induced RNases in tomato. Plant Mol. Biol. 36: 439-449 (1998).

Lers A, Sonego L, Green PJ, Burd S. Suppression of LX ribonuclease in tomato results in a delay of leaf senescence and abscission. Plant Physiol. 142: 710-721 (2006).

Leseberg CH, Eissler CL, Wang X, Johns MA, Duvall MR, Mao L. Interaction study of MADS-domain proteins in tomato. J. Exp. Bot. 59: 2253-2265 (2008).

Lewinsohn E, Schalechet F, Wilkinson J, Matsui K, Tadmor Y, Nam KH, Amar O, Lastochkin E, Larkov O, Ravid U, Hiatt W, Gepstein S, Pichersky E. Enhanced levels of the aroma and flavor compound S-linalool by metabolic engineering of the terpenoid pathway in tomato fruits. Plant Physiol. 127: 1256-1265 (2001).

Lewis JD, Wang XZ, Griffin KL, Tissue DT. Effects of age and ontogeny on photosynthetic responses of a determinate annual plant to elevated CO2 concentrations. Plant Cell Environ. 25: 359-368 (2002).

Lhuissier FG, Offenberg HH, Wittich PE, Vischer NO, Heyting C. The mismatch repair protein MLH1 marks a subset of strongly interfering crossovers in tomato. Plant Cell 19: 862-876 (2007).

Li AX, Eannetta N, Ghangas GS, Steffens JC. Glucose polyester biosynthesis. Purification and characterization of a glucose acyltransferase. Plant Physiol. 121: 453-460 (1999).

Li C, Bai Y, Jacobsen E, Visser R, Lindhout P, Bonnema G. Tomato defense to the powdery mildew fungus: differences in expression of genes in susceptible, monogenic- and polygenic resistance responses are mainly in timing. Plant Mol. Biol. 62: 127-140 (2006).

Li C, Liu G, Xu C, Lee GI, Bauer P, Ling HQ, Ganal MW, Howe GA. The tomato suppressor of prosystemin-mediated responses2 gene encodes a fatty acid desaturase required for the biosynthesis of jasmonic acid and the production of a systemic wound signal for defense gene expression. Plant Cell 15: 1646-1661 (2003).

Li C, Schilmiller AL, Liu G, Lee GI, Jayanty S, Sageman C, Vrebalov J, Giovannoni JJ, Yagi K, Kobayashi Y, Howe GA. Role of beta-oxidation in jasmonate biosynthesis and systemic wound signaling in tomato. Plant Cell 17: 971-986 (2005).

Li C, Williams MM, Loh YT, Lee GI, Howe GA. Resistance of cultivated tomato to cell content-feeding herbivores is regulated by the octadecanoid-signaling pathway. Plant Physiol. 130: 494-503 (2002).

Li D, Liu H, Zhang H, Wang X, Song F. OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress. J. Exp. Bot. 59: 2133-2146 (2008).

Li J, Wu XD, Hao ST, Wang XJ, Ling HQ. Proteomic response to iron deficiency in tomato root. Proteomics 8: 2299-2311 (2008).

Li JF, Qu LH, Li N. Tyr152 plays a central role in the catalysis of 1-aminocyclopropane-1-carboxylate synthase. J. Exp. Bot. 56: 2203-2210 (2005).

Li L, Li C, Howe GA. Genetic analysis of wound signaling in tomato. Evidence for a dual role of jasmonic acid in defense and female fertility. Plant Physiol. 127: 1414-1417 (2001).

Li L, Steffens JC. Overexpression of polyphenol oxidase in transgenic tomato plants results in enhanced bacterial disease resistance. Planta 215: 239-247 (2002).

Li L, Zhao Y, McCaig BC, Wingerd BA, Wang J, Whalon ME, Pichersky E, Howe GA. The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. Plant Cell 16: 126-143 (2004).

Li N, Jiang XN, Cai GP, Yang SF. A novel bifunctional fusion enzyme catalyzing ethylene synthesis via 1-aminocyclopropane1-carboxylic acid. J. Biol. Chem. 271: 25738-25741 (1996).

Li QB, Haskell DW, Guy CL. Coordinate and non-coordinate expression of the stress 70 family and other molecular chaperones at high and low temperature in spinach and tomato. Plant Mol. Biol. 39: 21-34 (1999).

Lichtenberger O, Neumann D. Analytical electron microscopy as a powerful tool in plant cell biology: examples using electron energy loss spectroscopy and X-ray microanalysis. Eur. J. Cell Biol. 73: 378-386 (1997).

Lifschitz E. Multiple regulatory roles for SELF-PRUNING in the shoot system of tomato. Plant Physiol. 148: 1737-1738 (2008).

Lifschitz E, Eshed Y. Universal florigenic signals triggered by FT homologues regulate growth and flowering cycles in perennial day-neutral tomato. J. Exp. Bot. 57: 3405-3414 (2006).

Lifschitz E, Eviatar T, Rozman A, Shalit A, Goldshmidt A, Amsellem Z, Alvarez JP, Eshed Y. The tomato FT ortholog triggers systemic signals that regulate growth and flowering and substitute for diverse environmental stimuli. Proc. Natl. Acad. Sci. U.S.A. 103: 6398-6403 (2006).

Lillo C, Meyer C, Ruoff P. The nitrate reductase circadian system. The central clock dogma contra multiple oscillatory feedback loops. Plant Physiol. 125: 1554-1557 (2001).

Lim MT, Kunkel BN. The Pseudomonas syringae type III effector AvrRpt2 promotes virulence independently of RIN4, a predicted virulence target in Arabidopsis thaliana. Plant J. 40: 790-798 (2004).

Lin KHR, Weng CC, Lo HF, Chen JT. Study of the root antioxidative system of tomatoes and eggplants under waterlogged conditions. Plant Sci. 167: 355-365 (2004).

Lin Z, Alexander L, Hackett R, Grierson D. LeCTR2, a CTR1-like protein kinase from tomato, plays a role in ethylene signalling, development and defence. Plant J. 54: 1083-1093 (2008).

Lin Z, Arciga-Reyes L, Zhong S, Alexander L, Hackett R, Wilson I, Grierson D. SlTPR1, a tomato tetratricopeptide repeat protein, interacts with the ethylene receptors NR and LeETR1, modulating ethylene and auxin responses and development. J. Exp. Bot. 59: 4271-4287 (2008).

Lin Z, Hong Y, Yin M, Li C, Zhang K, Grierson D. A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening. Plant J. 55: 301-310 (2008).

Link V, Sinha AK, Vashista P, Hofmann MG, Proels RK, Ehness R, Roitsch T. A heat-activated MAP kinase in tomato: a possible regulator of the heat stress response. FEBS Lett. 531: 179-183 (2002).

Link VL, Hofmann MG, Sinha AK, Ehness R, Strnad M, Roitsch T. Biochemical evidence for the activation of distinct subsets of mitogen-activated protein kinases by voltage and defense-related stimuli. Plant Physiol. 128: 271-281 (2002).

Lison P, Rodrigo I, Conejero V. A novel function for the cathepsin D inhibitor in tomato. Plant Physiol. 142: 1329-1339 (2006).

Lisso J, Altmann T, Mussig C. Metabolic changes in fruits of the tomato d(x) mutant. Phytochemistry 67: 2232-2238 (2006).

Liu D, Galli M, Crawford M. Engineering variegated floral patterns in tobacco plants using the Arabidopsis transposable element Tag1. Plant Cell Physiol. 42: 419-423 (2001).

Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR. An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. Plant J. 41: 304-318 (2005).

Liu HF, Genard M, Guichard S, Bertin N. Model-assisted analysis of tomato fruit growth in relation to carbon and water fluxes. J. Exp. Bot. 58: 3567-3580 (2007).

Liu J, Cong B, Tanksley SD. Generation and analysis of an artificial gene dosage series in tomato to study the mechanisms by which the cloned quantitative trait locus fw2.2 controls fruit size. Plant Physiol. 132: 292-299 (2003).

Liu JG, Yao QH, Zhang Z, Peng RH, Xiong AS, Xu F, Zhu H. Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L. J. Biochem. Mol. Biol. 38: 602-608 (2005).

Liu K, Kang BC, Jiang H, Moore SL, Li H, Watkins CB, Setter TL, Jahn MM. A GH3-like gene, CcGH3, isolated from Capsicum chinense L. fruit is regulated by auxin and ethylene. Plant Mol. Biol. 58: 447-464 (2005).

Liu Y, Ren D, Pike S, Pallardy S, Gassmann W, Zhang S. Chloroplast-generated reactive oxygen species are involved in hypersensitive response-like cell death mediated by a mitogen-activated protein kinase cascade. Plant J. 51: 941-954 (2007).

Liu Y, Schiff M, Dinesh-Kumar SP. Virus-induced gene silencing in tomato. Plant J. 31: 777-786 (2002).

Llop-Tous I, Barry CS, Grierson D. Regulation of ethylene biosynthesis in response to pollination in tomato flowers. Plant Physiol. 123: 971-978 (2000).

Lochman J, Mikes V. Ergosterol treatment leads to the expression of a specific set of defence-related genes in tobacco. Plant Mol. Biol. 62: 43-51 (2006).

Loh YT, Martin GB. The Pto bacterial resistance gene and the Fen insecticide sensitivity gene encode functional protein kinases with serine/threonine specificity. Plant Physiol. 108: 1735-1739 (1995).

Lohar DP, Schaff JE, Laskey JG, Kieber JJ, Bilyeu KD, Bird DM. Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbioses. Plant J. 38: 203-214 (2004).

Lois LM, Rodriguez-Concepcion M, Gallego F, Campos N, Boronat A. Carotenoid biosynthesis during tomato fruit development: regulatory role of 1-deoxy-D-xylulose 5-phosphate synthase. Plant J. 22: 503-513 (2000).

Long M, Millar DJ, Kimura Y, Donovan G, Rees J, Fraser PD, Bramley PM, Bolwell GP. Metabolite profiling of carotenoid and phenolic pathways in mutant and transgenic lines of tomato: identification of a high antioxidant fruit line. Phytochemistry 67: 1750-1757 (2006).

Lopez-Casado G, Matas AJ, Domínguez E, Cuartero J, Heredia A. Biomechanics of isolated tomato (Solanum lycopersicum L.) fruit cuticles: the role of the cutin matrix and polysaccharides. J. Exp. Bot. 58: 3875-3883 (2007).

Lopez-Millan AF, Morales F, Gogorcena Y, Abadia A, Abadia J. Iron resupply-mediated deactivation of Fe-deficiency stress responses in roots of sugar beet. Aust. J. Plant Physiol. 28: 171-180 (2001).

Loraine AE, Yalovsky S, Fabry S, Gruissem W. Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells. Plant Physiol. 110: 1337-1347 (1996).

Loreto F, Ciccioli P, Cecinato A, Brancaleoni E, Frattoni M, Tricoli D. Influence of environmental factors and air composition on the emission of [alpha]-pinene from Quercus ilex leaves. Plant Physiol. 110: 267-275 (1996).

Loreto F, Delfine S, Di Marco G. Estimation of photorespiratory carbon dioxide recycling during photosynthesis. Aust. J. Plant Physiol. 26: 733-736 (1999).

Lorrain S, Lin B, Auriac MC, Kroj T, Saindrenan P, Nicole M, Balague C, Roby D. VASCULAR ASSOCIATED DEATH1, a novel GRAM domain-containing protein, is a regulator of cell death and defense responses in vascular tissues. Plant Cell 16: 2217-2232 (2004).

Loureiro J, Rodriguez E, Dolezel J, Santos C. Comparison of four nuclear isolation buffers for plant DNA flow cytometry. Ann. Bot. (Lond.) 98: 679-689 (2006).

Low D, Brandle K, Nover L, Forreiter C. Cytosolic heat-stress proteins Hsp17.7 class I and Hsp17.3 class II of tomato act as molecular chaperones in vivo. Planta 211: 575-582 (2000).

Lucena C, Waters BM, Romera FJ, Garcia MJ, Morales M, Alcantara E, Perez-Vicente R. Ethylene could influence ferric reductase, iron transporter, and H+-ATPase gene expression by affecting FER (or FER-like) gene activity. J. Exp. Bot. 57: 4145-4154 (2006).

Lund ST, Stall RE, Klee HJ. Ethylene regulates the susceptible response to pathogen infection in tomato. Plant Cell 10: 371-382 (1998).

Lunn JE, Gillespie VJ, Furbank RT. Expression of a cyanobacterial sucrose-phosphate synthase from Synechocystis sp. PCC 6803 in transgenic plants. J. Exp. Bot. 54: 223-237 (2003).

Luo H, Lee JY, Hu Q, Nelson-Vasilchik K, Eitas TK, Lickwar C, Kausch AP, Chandlee JM, Hodges TK. RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species. Plant Mol. Biol. 62: 397-408 (2006).

Luo H, Song F, Zheng Z. Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses. J. Exp. Bot. 56: 2673-2682 (2005).

Luo J, Butelli E, Hill L, Parr A, Niggeweg R, Bailey P, Weisshaar B, Martin C. AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato; expression in fruit results in very high levels of both types of polyphenol. Plant J. 56: 316-326 (2008).

Lyck R, Harmening U, Hohfeld I, Treuter E, Scharf KD, Nover L. Intracellular distribution and identification of the nuclear localization signals of two plant heat-stress transcription factors. Planta 202: 117-125 (1997).

Mach J. Effector XopD suppresses tissue degeneration in Xanthomonas-infected tomato leaves. Plant Cell 20: 1731 (2008).

Madlung A, Behringer FJ, Lomax TL. Ethylene plays multiple nonprimary roles in modulating the gravitropic response in tomato. Plant Physiol. 120: 897-906 (1999).

Maggio A, De Pascale S, Ruggiero C, Barbieri G. Physiological response of field-grown cabbage to salinity and drought stress. Eur. J. Agron. 23: 57-67 (2005).

Maggio A, Hasegawa PM, Bressan RA, Consiglio MF, Joly RJ. Unravelling the functional relationship between root anatomy and stress tolerance. Aust. J. Plant Physiol. 28: 999-1004 (2001).

Maggio A, Miyazaki S, Veronese P, Fujita T, Ibeas JI, Damsz B, Narasimhan ML, Hasegawa PM, Joly RJ, Bressan RA. Does proline accumulation play an active role in stress-induced growth reduction? Plant J. 31: 699-712 (2002).

Makela P, Munns R, Colmer TD, Condon AG, Peltonen-Sainio P. Effect of foliar applications of glycinebetaine on stomatal conductance, abscisic acid and solute concentrations in leaves of salt- or drought-stressed tomato. Aust. J. Plant Physiol. 25: 655-663 (1998).

Makela P, PeltonenSainio P, Jokinen K, Pehu E, Setala H, Hinkkanen R, Somersalo S. Uptake and translocation of foliar-applied glycinebetaine in crop plants. Plant Sci. 121: 221-230 (1996).

Malehorn DE, Borgmeyer JR, Smith CE, Shah DM. Characterization and expression of an antifungal zeamatin-like protein (Zlp) gene from Zea mays. Plant Physiol. 106: 1471-1481 (1994).

Malinowski R, Higgins R, Luo Y, Piper L, Nazir A, Bajwa VS, Clouse SD, Thompson PR, Stratmann JW. The tomato brassinosteroid receptor BRI1 increases binding of systemin to tobacco plasma membranes, but is not involved in systemin signaling. Plant Mol. Biol. 70: 603-616 (2009).

Malmberg RL, Watson MB, Galloway GL, Yu W. Molecular genetic analyses of plant polyamines. Crit. Rev. Plant Sci. 17: 199-224 (1998).

Malone M, White P, Morales MA. Mobilization of calcium in glasshouse tomato plants by localized scorching. J. Exp. Bot. 53: 83-88 (2002).

Mansfield JW. Biophoton distress flares signal the onset of the hypersensitive reaction. Trends Plant Sci. 10: 307-309 (2005).

Mao L, Begum D, Goff SA, Wing RA. Sequence and analysis of the tomato jointless locus. Plant Physiol. 126: 1331-1340 (2001).

March-Diaz R, Garcia-Dominguez M, Lozano-Juste J, Leon J, Florencio FJ, Reyes JC. Histone H2A.Z and homologues of components of the SWR1 complex are required to control immunity in Arabidopsis. Plant J. 53: 475-487 (2008).

Marco F, Calvo E, Carrasco P, Sanz MJ. Analysis of molecular markers in three different tomato cultivars exposed to ozone stress. Plant Cell Rep. 27: 197-207 (2008).

Marin-Manzano MC, Rodriguez-Rosales MP, Belver A, Donaire JP, Venema K. Heterologously expressed protein phosphatase calcineurin downregulates plant plasma membrane H+-ATPase activity at the post-translational level. FEBS Lett. 576: 266-270 (2004).

Marin-Rodriguez MC, Orchard J, Seymour GB. Pectate lyases, cell wall degradation and fruit softening. J. Exp. Bot. 53: 2115-2119 (2002).

Marsh JT, Sullivan S, Hartwell J, Nimmo HG. Structure and expression of phosphoenolpyruvate carboxylase kinase genes in solanaceae. A novel gene exhibits alternative splicing. Plant Physiol. 133: 2021-2028 (2003).

Martí C, Orzaez D, Ellul P, Moreno V, Carbonell J, Granell A. Silencing of DELLA induces facultative parthenocarpy in tomato fruits. Plant J. 52: 865-876 (2007).

Marti E, Gisbert C, Bishop GJ, Dixon MS, Garcia-Martinez JL. Genetic and physiological characterization of tomato cv. Micro-Tom. J. Exp. Bot. 57: 2037-2047 (2006).

Martin BA, Tolbert NE. Factors which affect the amount of inorganic phosphate, phosphorylcholine, and phosphorylethanolamine in xylem exudate of tomato plants. Plant Physiol. 73: 464-470 (1983).

Martin GB, Williams JGK, Tanksley SD. Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines. Proc. Natl. Acad. Sci. U.S.A. 88: 2336-2340 (1991).

Martin MN, Cohen JD, Saftner RA. A new 1-aminocyclopropane-1-carboxylic acid-conjugating activity in tomato fruit. Plant Physiol. 109: 917-926 (1995).

Martin MN, Slovin JP. Purified gamma-glutamyl transpeptidases from tomato exhibit high affinity for glutathione and glutathione S-conjugates. Plant Physiol. 122: 1417-1426 (2000).

Martinez-Barajas E, Randall DD. Purification and characterization of a glucokinase from young tomato (Lycopersicon esculentum L. Mill.) fruit. Planta 205: 567-573 (1998).

Marty I, Douat C, Tichit L, Jungsup K, Leustek T, Albagnac G. The cystathionine-gamma-synthase gene involved in methionine biosynthesis is highly expressed and auxin-repressed during wild strawberry (Fragaria vesca L.) fruit ripening. Theor. Appl. Genet. 100: 1129-1136 (2000).

Matarasso N, Schuster S, Avni A. A novel plant cysteine protease has a dual function as a regulator of 1-aminocyclopropane-1-carboxylic acid synthase gene expression. Plant Cell 17: 1205-1216 (2005).

Mathews H, Clendennen SK, Caldwell CG, Liu XL, Connors K, Matheis N, Schuster DK, Menasco DJ, Wagoner W, Lightner J, Wagner DR. Activation tagging in tomato identifies a transcriptional regulator of anthocyanin biosynthesis, modification, and transport. Plant Cell 15: 1689-1703 (2003).

Mathieu S, Cin VD, Fei Z, Li H, Bliss P, Taylor MG, Klee HJ, Tieman DM. Flavour compounds in tomato fruits: identification of loci and potential pathways affecting volatile composition. J. Exp. Bot. 60: 325-337 (2009).

Matsui K, Fukutomi S, Ishii M, Kajiwara T. A tomato lipase homologous to DAD1 (LeLID1) is induced in post-germinative growing stage and encodes a triacylglycerol lipase. FEBS Lett. 569: 195-200 (2004).

Matsushita Y, Miyakawa O, Deguchi M, Nishiguchi M, Nyunoya H. Cloning of a tobacco cDNA coding for a putative transcriptional coactivator MBF1 that interacts with the tomato mosaic virus movement protein. J. Exp. Bot. 53: 1531-1532 (2002).

Mattoo AK, Sobolev AP, Neelam A, Goyal RK, Handa AK, Segre AL. NMR spectroscopy based metabolite profiling of transgenic tomato fruit engineered to accumulate spermidine and spermine reveals enhanced anabolic and nitrogen-carbon interactions. Plant Physiol. 142: 1759-1770 (2006).

Mayer RT, McCollum TG, Niedz RP, Hearn CJ, McDonald RE, Berdis E, Doostdar H. Characterization of seven basic endochitinases isolated from cell cultures of Citrus sinensis (L.). Planta 200: 289-295 (1996).

McCartney AW, Greenwood JS, Fabian MR, White KA, Mullen RT. Localization of the tomato bushy stunt virus replication protein p33 reveals a peroxisome-to-endoplasmic reticulum sorting pathway. Plant Cell 17: 3513-3531 (2005).

McCaskill D, Croteau R. Strategies for bioengineering the development and metabolism of glandular tissues in plants. Nat. Biotechnol. 17: 31-36 (1999).

Meadows AL, Roy S, Clark DS, Blanch HW. Optimal design of metabolic flux analysis experiments for anchorage-dependent mammalian cells using a cellular automaton model. Biotechnol. Bioeng. 98: 221-229 (2007).

Meier I, Callan KL, Fleming AJ, Gruissem W. Organ-specific differential regulation of a promoter subfamily for the ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit genes in tomato. Plant Physiol. 107: 1105-1118 (1995).

Meissner R, Theres K. Isolation and characterization of the tomato homeobox gene THOM1. Planta 195: 541-547 (1995).

Menda N, Semel Y, Peled D, Eshed Y, Zamir D. In silico screening of a saturated mutation library of tomato. Plant J. 38: 861-872 (2004).

Mengiste T, Chen X, Salmeron J, Dietrich R. The BOTRYTIS SUSCEPTIBLE1 gene encodes an R2R3MYB transcription factor protein that is required for biotic and abiotic stress responses in Arabidopsis. Plant Cell 15: 2551-2565 (2003).

Menu T, Saglio P, Granot D, Dai N, Raymond P, Ricard B. High hexokinase activity in tomato fruit perturbs carbon and energy metabolism and reduces fruit and seed size. Plant Cell Environ. 27: 89-98 (2004).

Menzel MI, Tittmann S, Buhler J, Preis S, Wolters N, Jahnke S, Walter A, Chlubek A, Leon A, Hermes N, Offenhauser A, Gilmer F, Blumler P, Schurr U, Krause HJ. Non-invasive determination of plant biomass with microwave resonators. Plant Cell Environ. 32: 368-379 (2009).

Mercado JA, Matas AJ, Heredia A, Valpuesta V, Quesada MA. Changes in the water binding characteristics of the cell walls from transgenic Nicotiana tabacum leaves with enhanced levels of peroxidase activity. Physiol. Plant. 122: 504-512 (2004).

Metz M, Dahlbeck D, Morales CQ, Al Sady B, Clark ET, Staskawicz BJ. The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana. Plant J. 41: 801-814 (2005).

Meve U, Liede S. Generic delimitations in tuberous Periplocoideae (Apocynaceae) from Africa and Madagascar. Ann. Bot. (Lond.) 93: 407-414 (2004).

Meyer C, Pouteau S, Rouze P, Caboche M. Isolation and molecular characterization of dTnp1, a mobile and defective transposable element of Nicotiana plumbaginifolia. Mol. Gen. Genet. 242: 194-200 (1994).

Miernyk JA, Hayman TG. ATPase activity and molecular chaperone function of the stress70 proteins. Plant Physiol. 110: 419-424 (1996).

Miersch O, Weichert H, Stenzel I, Hause B, Maucher H, Feussner I, Wasternack C. Constitutive overexpression of allene oxide cyclase in tomato (Lycopersicon esculentum cv. Lukullus) elevates levels of some jasmonates and octadecanoids in flower organs but not in leaves. Phytochemistry 65: 847-856 (2004).

Migge A, Carrayol E, Hirel B, Lohmann M, Meya G, Becker TW. Two nitrite reductase isoforms are present in tomato cotyledons and are regulated differently by UV-A or UV-B light and during plant development. Planta 207: 229-234 (1998).

Migge A, Carrayol E, Hirel B, Lohmann M, Meya G, Becker TW. Regulation of the subunit composition of plastidic glutamine synthetase of the wild-type and of the phytochrome-deficient aurea mutant of tomato by blue/UV-A- or by UV-B-light. Plant Mol. Biol. 37: 689-700 (1998).

Millar DJ, Long M, Donovan G, Fraser PD, Boudet AM, Danoun S, Bramley PM, Bolwell GP. Introduction of sense constructs of cinnamate 4-hydroxylase (CYP73A24) in transgenic tomato plants shows opposite effects on flux into stem lignin and fruit flavonoids. Phytochemistry 68: 1497-1509 (2007).

Miller G, Mittler R. Could heat shock transcription factors function as hydrogen peroxide sensors in plants? Ann. Bot. (Lond.) 98: 279-288 (2006).

Miller KD, Strommer J, Taylor LP. Conservation in divergent solanaceous species of the unique gene structure and enzyme activity of a gametophytically-expressed flavonol 3-O-galactosyltransferase. Plant Mol. Biol. 48: 233-242 (2002).

Milligan SB, Bodeau J, Yaghoobi J, Kaloshian I, Zabel P, Williamson VM. The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes. Plant Cell 10: 1307-1319 (1998).

Mingo DM, Bacon MA, Davies WJ. Non-hydraulic regulation of fruit growth in tomato plants (Lycopersicon esculentum cv. Solairo) growing in drying soil. J. Exp. Bot. 54: 1205-1212 (2003).

Mitani N, Ma JF. Uptake system of silicon in different plant species. J. Exp. Bot. 56: 1255-1261 (2005).

Mito N, Bennett AB. The diageotropica mutation and synthetic auxins differentially affect the expression of auxin-regulated genes in tomato. Plant Physiol. 109: 293-297 (1995).

Mito N, Wimmers LE, Bennett AB. Sugar regulates mRNA abundance of H(+)-ATPase gene family members in tomato. Plant Physiol. 112: 1229-1236 (1996).

Mittova V, Guy M, Tal M, Volokita M. Salinity up-regulates the antioxidative system in root mitochondria and peroxisomes of the wild salt-tolerant tomato species Lycopersicon pennellii. J. Exp. Bot. 55: 1105-1113 (2004).

Mittova V, Tal M, Volokita M, Guy M. Up-regulation of the leaf mitochondrial and peroxisomal antioxidative systems in response to salt-induced oxidative stress in the wild salt-tolerant tomato species Lycopersicon pennellii. Plant Cell Environ. 26: 845-856 (2003).

Mittova V, Theodoulou FL, Kiddle G, Volokita M, Tal M, Foyer CH, Guy M. Comparison of mitochondrial ascorbate peroxidase in the cultivated tomato, Lycopersicon esculentum, and its wild, salt-tolerant relative, L-pennellii - a role for matrix isoforms in protection against oxidative damage. Plant Cell Environ. 27: 237-250 (2004).

Mo B, Bewley JD. Beta-mannosidase (EC 3.2.1.25) activity during and following germination of tomato (Lycopersicon esculentum Mill.) seeds. Purification, cloning and characterization. Planta 215: 141-152 (2002).

Mo B, Bewley JD. The relationship between beta-mannosidase and endo-beta-mannanase activities in tomato seeds during and following germination: a comparison of seed populations and individual seeds. J. Exp. Bot. 54: 2503-2510 (2003).

Moco S, Bino RJ, Vorst O, Verhoeven HA, de Groot J, van Beek TA, Vervoort J, de Vos CH. A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiol. 141: 1205-1218 (2006).

Moco S, Capanoglu E, Tikunov Y, Bino RJ, Boyacioglu D, Hall RD, Vervoort J, De Vos RC. Tissue specialization at the metabolite level is perceived during the development of tomato fruit. J. Exp. Bot. 58: 4131-4146 (2007).

Moeder W, Barry CS, Tauriainen AA, Betz C, Tuomainen J, Utriainen M, Grierson D, Sandermann H, Langebartels C, Kangasjarvi J. Ethylene synthesis regulated by biphasic induction of 1-aminocyclopropane-1-carboxylic acid synthase and 1-aminocyclopropane-1-carboxylic acid oxidase genes is required for hydrogen peroxide accumulation and cell death in ozone-exposed tomato. Plant Physiol. 130: 1918-1926 (2002).

Mogami N, Shiota H, Tanaka I. The identification of a pollen-specific LEA-like protein in Lilium longiflorum. Plant Cell Environ. 25: 653-663 (2002).

Mohamed EA, Iwaki T, Munir I, Tamoi M, Shigeoka S, Wadano A. Overexpression of bacterial catalase in tomato leaf chloroplasts enhances photo-oxidative stress tolerance. Plant Cell Environ. 26: 2037-2046 (2003).

Moldau H, Bichele I. Plasmalemma protection by the apoplast as assessed from above-zero ozone concentrations in leaf intercellular air spaces. Planta 214: 484-487 (2002).

Molesini B, Pandolfini T, Rotino GL, Dani V, Spena A. Aucsia genes silencing causes parthenocarpic fruit development in tomato. Plant Physiol. 149: 534-548 (2009).

Molina-Favero C, Creus CM, Simontacchi M, Puntarulo S, Lamattina L. Aerobic nitric oxide production by Azospirillum brasilense Sp245 and its influence on root architecture in tomato. Mol. Plant Microbe Interact. 21: 1001-1009 (2008).

Molinero-Rosales N, Latorre A, Jamilena M, Lozano R. SINGLE FLOWER TRUSS regulates the transition and maintenance of flowering in tomato. Planta 218: 427-434 (2004).

Molnar A, Lovas A, Banfalvi Z, Lakatos L, Polgar Z, Horvath S. Tissue-specific signal(s) activate the promoter of a metallocarboxypeptidase inhibitor gene family in potato tuber and berry. Plant Mol. Biol. 46: 301-311 (2001).

Montoya T, Nomura T, Farrar K, Kaneta T, Yokota T, Bishop GJ. Cloning the tomato curl3 gene highlights the putative dual role of the leucine-rich repeat receptor kinase tBRI1/SR160 in plant steroid hormone and peptide hormone signaling. Plant Cell 14: 3163-3176 (2002).

Montoya T, Nomura T, Yokota T, Farrar K, Harrison K, Jones JG, Kaneta T, Kamiya Y, Szekeres M, Bishop GJ. Patterns of Dwarf expression and brassinosteroid accumulation in tomato reveal the importance of brassinosteroid synthesis during fruit development. Plant J. 42: 262-269 (2005).

Moon H, Callahan AM. Developmental regulation of peach ACC oxidase promoter--GUS fusions in transgenic tomato fruits. J. Exp. Bot. 55: 1519-1528 (2004).

Moore S, Payton P, Wright M, Tanksley S, Giovannoni J. Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae. J. Exp. Bot. 56: 2885-2895 (2005).

Moore S, Vrebalov J, Payton P, Giovannoni J. Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato. J. Exp. Bot. 53: 2023-2030 (2002).

Morales D, Rodriguez P, Dell'Amico J, Nicolas E, Torrecillas A, Sanchez-Blanco MJ. High-temperature preconditioning and thermal shock imposition affects water relations, gas exchange and root hydraulic conductivity in tomato.. Biol. Plant. 47: 203-208 (2004).

Morard P, Lacoste L, Silvestre J. Effect of oxygen deficiency on mineral nutrition of excised tomato roots. J. Plant Nutr. 27: 613-626 (2004).

Morard P, Silvestre J, Lacoste L, Caumes E, Lamaze T. Nitrate uptake and nitrite release by tomato roots in response to anoxia. J. Plant Physiol. 161: 855-865 (2004).

Morikawa T, Mizutani M, Aoki N, Watanabe B, Saga H, Saito S, Oikawa A, Suzuki H, Sakurai N, Shibata D, Wadano A, Sakata K, Ohta D. Cytochrome P450 CYP710A encodes the sterol C-22 desaturase in Arabidopsis and tomato. Plant Cell 18: 1008-1022 (2006).

Morohashi Y. Peroxidase activity develops in the micropylar endosperm of tomato seeds prior to radicle protrusion. J. Exp. Bot. 53: 1643-1650 (2002).

Mortain-Bertrand A, Stammitti L, Telef N, Colardelle P, Brouquisse R, Rolin D, Gallusci P. Effects of exogenous glucose on carotenoid accumulation in tomato leaves. Physiol. Plant. 134: 246-256 (2008).

Mounet F, Moing A, Garcia V, Petit J, Maucourt M, Deborde C, Bernillon S, Le Gall G, Colquhoun I, Defernez M, Giraudel JL, Rolin D, Rothan C, Lemaire-Chamley M. Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development. Plant Physiol. 149: 1505-1528 (2009).

Muchhal US, Raghothama KG. Transcriptional regulation of plant phosphate transporters. Proc. Natl. Acad. Sci. U.S.A. 96: 5868-5872 (1999).

Mucyn TS, Clemente A, Andriotis VM, Balmuth AL, Oldroyd GE, Staskawicz BJ, Rathjen JP. The tomato NBARC-LRR protein Prf interacts with Pto kinase in vivo to regulate specific plant immunity. Plant Cell 18: 2792-2806 (2006).

Muday GK, Lomax TL, Rayle DL. Characterization of the growth and auxin physiology of roots of the tomato mutant, diageotropica. Planta 195: 548-553 (1995).

Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD. The SOL genomics network. a comparative resource for Solanaceae biology and beyond. Plant Physiol. 138: 1310-1317 (2005).

Muir SR, Collins GJ, Robinson S, Hughes S, Bovy A, De Vos CHR, van Tunen AJ, Verhoeyen ME. Overexpression of petunia chalcone isomerase in tomato results in fruit containing increased levels of flavonols. Nat. Biotechnol. 19: 470-474 (2001).

Muller D, Schmitz G, Theres K. Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis. Plant Cell 18: 586-597 (2006).

Munnik T, Meijer HJ, Ter Riet B, Hirt H, Frank W, Bartels D, Musgrave A. Hyperosmotic stress stimulates phospholipase D activity and elevates the levels of phosphatidic acid and diacylglycerol pyrophosphate. Plant J. 22: 147-154 (2000).

Murray TA, McManus MT. Developmental regulation of 1-aminocyclopropane-1-carboxylate synthase gene expression during leaf ontogeny in white clover. Physiol. Plant. 124: 107-120 (2005).

Mustilli AC, Fenzi F, Ciliento R, Alfano F, Bowler C. Phenotype of the tomato high pigment-2 mutant is caused by a mutation in the tomato homolog of DEETIOLATED1. Plant Cell 11: 145-157 (1999).

Mysore KS, Crasta OR, Tuori RP, Folkerts O, Swirsky PB, Martin GB. Comprehensive transcript profiling of Pto- and Prf-mediated host defense responses to infection by Pseudomonas syringae pv. tomato. Plant J. 32: 299-315 (2002).

Mysore KS, D'Ascenzo MD, He X, Martin GB. Overexpression of the disease resistance gene pto in tomato induces gene expression changes similar to immune responses in human and fruitfly. Plant Physiol. 132: 1901-1912 (2003).

Nagar S, Hanley-Bowdoin L, Robertson D. Host DNA replication is induced by geminivirus infection of differentiated plant cells. Plant Cell 14: 2995-3007 (2002).

Nagel OW, Lambers H. Changes in the acquisition and partitioning of carbon and nitrogen in the gibberellin-deficient mutants A70 and W335 of tomato (Solanum lycopersicum L.). Plant Cell Environ. 25: 883-891 (2002).

Nagy R, Karandashov V, Chague V, Kalinkevich K, Tamasloukht M, Xu G, Jakobsen I, Levy AA, Amrhein N, Bucher M. The characterization of novel mycorrhiza-specific phosphate transporters from Lycopersicon esculentum and Solanum tuberosum uncovers functional redundancy in symbiotic phosphate transport in solanaceous species. Plant J. 42: 236-250 (2005).

Nakajima N, Itoh T, Takikawa S, Asai N, Tamaoki M, Aono M, Kubo A, Azumi Y, Kamada H, Saji H. Improvement in ozone tolerance of tobacco plants with an antisense DNA for 1-aminocyclopropane-1-carboxylate synthase. Plant Cell Environ. 25: 727-735 (2002).

Nakashima K, Yamaguchi-Shinozaki K. Regulons involved in osmotic stress-responsive and cold stress-responsive gene expression in plants. Physiol. Plant. 126: 62-71 (2006).

Nakatsuka A, Murachi S, Okunishi H, Shiomi S, Nakano R, Kubo Y, Inaba A. Differential expression and internal feedback regulation of 1-aminocyclopropane-1-carboxylate synthase, 1-aminocyclopropane-1-carboxylate oxidase, and ethylene receptor genes in tomato fruit during development and ripening. Plant Physiol. 118: 1295-1305 (1998).

Nakatsuka A, Shiomi S, Kubo Y, Inaba A. Expression and internal feedback regulation of ACC synthase and ACC oxidase genes in ripening tomato fruit. Plant Cell Physiol. 38: 1103-1010 (1997).

Naqvi SM, Harper A, Carter C, Ren G, Guirgis A, York WS, Thornburg RW. Nectarin IV, a potent endoglucanase inhibitor secreted into the nectar of ornamental tobacco plants. Isolation, cloning, and characterization. Plant Physiol. 139: 1389-1400 (2005).

Narvaez-Vasquez J, Florin-Christensen J, Ryan CA. Positional specificity of a phospholipase A activity induced by wounding, systemin, and oligosaccharide elicitors in tomato leaves. Plant Cell 11: 2249-2260 (1999).

Narvaez-Vasquez J, Orozco-Cardenas ML, Ryan CA. Systemic wound signaling in tomato leaves is cooperatively regulated by systemin and hydroxyproline-rich glycopeptide signals. Plant Mol. Biol. 65: 711-718 (2007).

Narvaez-Vasquez J, Ryan CA. The cellular localization of prosystemin: a functional role for phloem parenchyma in systemic wound signaling. Planta 218: 360-369 (2004).

Nashilevitz S, Melamed-Bessudo C, Aharoni A, Kossmann J, Wolf S, Levy AA. The legwd mutant uncovers the role of starch phosphorylation in pollen development and germination in tomato. Plant J. 57: 1-13 (2009).

Navarro L, Zipfel C, Rowland O, Keller I, Robatzek S, Boller T, Jones JD. The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis. Plant Physiol. 135: 1113-1128 (2004).

Nebenfuhr A, White TJ, Lomax TL. The diageotropica mutation alters auxin induction of a subset of the Aux/IAA gene family in tomato. Plant Mol. Biol. 44: 73-84 (2000).

Neelam A, Cassol T, Mehta RA, Abdul-Baki AA, Sobolev AP, Goyal RK, Abbott J, Segre AL, Handa AK, Mattoo AK. A field-grown transgenic tomato line expressing higher levels of polyamines reveals legume cover crop mulch-specific perturbations in fruit phenotype at the levels of metabolite profiles, gene expression, and agronomic characteristics. J. Exp. Bot. 59: 2337-2346 (2008).

Negrel J, Javelle F. Induction of phenylpropanoid and tyramine metabolism in pectinase- or pronase-elicited cell suspension cultures of tobacco (Nicotiana tabacum). Physiol. Plant. 95: 569-574 (1995).

Nemecek-Marshall M, MacDonald RC, Franzen JJ, Wojciechowski CL, Fall R. Methanol emission from leaves. Enzymatic detection of gas-phase methanol and relation of methanol fluxes to stomatal conductance and leaf development. Plant Physiol. 108: 1359-1368 (1995).

Ner-Gaon H, Leviatan N, Rubin E, Fluhr R. Comparative cross-species alternative splicing in plants. Plant Physiol. 144: 1632-1641 (2007).

Neta-Sharir I, Isaacson T, Lurie S, Weiss D. Dual role for tomato heat shock protein 21: protecting photosystem II from oxidative stress and promoting color changes during fruit maturation. Plant Cell 17: 1829-1838 (2005).

Neumann PM. Evidence for long-distance xylem transport of signal peptide activity from tomato roots. J. Exp. Bot. 58: 2217-2223 (2007).

Nguema-Ona E, Bannigan A, Chevalier L, Baskin TI, Driouich A. Disruption of arabinogalactan proteins disorganizes cortical microtubules in the root of Arabidopsis thaliana. Plant J. 52: 240-251 (2007).

Nguyen-Quoc B, Foyer CH. A role for 'futile cycles' involving invertase and sucrose synthase in sucrose metabolism of tomato fruit. J. Exp. Bot. 52: 881-889 (2001).

Ni BR, Bradford KJ. Germination and dormancy of abscisic acid- and gibberellin-deficient mutant tomato (Lycopersicon esculentum) seeds. Sensitivity of germination to abscisic acid, gibberellin, and water potential. Plant Physiol. 101: 607-617 (1993).

Niderman T, Genetet I, Bruyere T, Gees R, Stintzi A, Legrand M, Fritig B, Mosinger E. Pathogenesis-related PR-1 proteins are antifungal. Isolation and characterization of three 14-kilodalton proteins of tomato and of a basic PR-1 of tobacco with inhibitory activity against Phytophthora infestans. Plant Physiol. 108: 17-27 (1995).

Nieves-Cordones M, Miller AJ, Aleman F, Martinez V, Rubio F. A putative role for the plasma membrane potential in the control of the expression of the gene encoding the tomato high-affinity potassium transporter HAK5. Plant Mol. Biol. 68: 521-532 (2008).

Nikolic M, Nikolic N, Liang Y, Kirkby EA, Romheld V. Germanium-68 as an adequate tracer for silicon transport in plants. Characterization of silicon uptake in different crop species. Plant Physiol. 143: 495-503 (2007).

Nishihara M, Ito M, Tanaka I, Kyo M, Ono K, Irifune K, Morikawa H. Expression of the [beta]-glucuronidase gene in pollen of lily (Lilium longiflorum), tobacco (Nicotiana tabacum), Nicotiana rustica, and peony (Paeonia lactiflora) by particle bombardment. Plant Physiol. 102: 357-361 (1993).

Nitsch LM, Oplaat C, Feron R, Ma Q, Wolters-Arts M, Hedden P, Mariani C, Vriezen WH. Abscisic acid levels in tomato ovaries are regulated by LeNCED1 and SlCYP707A1. Planta 229: 1335-1346 (2009).

Niu X, Zheng W, Lu BR, Ren G, Huang W, Wang S, Liu J, Tang Z, Luo D, Wang Y, Liu Y. An unusual posttranscriptional processing in two betaine aldehyde dehydrogenase loci of cereal crops directed by short, direct repeats in response to stress conditions. Plant Physiol. 143: 1929-1942 (2007).

Noiriel A, Naponelli V, Gregory JF 3rd, Hanson AD. Pterin and folate salvage. Plants and Escherichia coli lack capacity to reduce oxidized pterins. Plant Physiol. 143: 1101-1109 (2007).

Nonogaki H, Gee OH, Bradford KJ. A germination-specific endo-beta-mannanase gene is expressed in the micropylar endosperm cap of tomato seeds. Plant Physiol. 123: 1235-1246 (2000).

North HM, De Almeida A, Boutin JP, Frey A, To A, Botran L, Sotta B, Marion-Poll A. The Arabidopsis ABA-deficient mutant aba4 demonstrates that the major route for stress-induced ABA accumulation is via neoxanthin isomers. Plant J. 50: 810-824 (2007).

Nunes-Nesi A, Carrari F, Gibon Y, Sulpice R, Lytovchenko A, Fisahn J, Graham J, Ratcliffe RG, Sweetlove LJ, Fernie AR. Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant J. 50: 1093-1106 (2007).

Nunes-Nesi A, Carrari F, Lytovchenko A, Smith AM, Loureiro ME, Ratcliffe RG, Sweetlove LJ, Fernie AR. Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiol. 137: 611-622 (2005).

Nunn AJ, Anegg S, Betz G, Simons S, Kalisch G, Seidlitz HK, Grams TEE, Haberle KH, Matyssek R, Bahnweg G, Sandermann H, Langebartels C. Role of ethylene in the regulation of cell death and leaf loss in ozone-exposed European beech. Plant Cell Environ. 28: 886-897 (2005).

O'Donnell PJ, Jones JB, Antoine FR, Ciardi J, Klee HJ. Ethylene-dependent salicylic acid regulates an expanded cell death response to a plant pathogen. Plant J. 25: 315-323 (2001).

O'Donnell PJ, Schmelz E, Block A, Miersch O, Wasternack C, Jones JB, Klee HJ. Multiple hormones act sequentially to mediate a susceptible tomato pathogen defense response. Plant Physiol. 133: 1181-1189 (2003).

O'Donnell PJ, Schmelz EA, Moussatche P, Lund ST, Jones JB, Klee HJ. Susceptible to intolerance--a range of hormonal actions in a susceptible Arabidopsis pathogen response. Plant J. 33: 245-257 (2003).

O'Donnell PJ, Truesdale MR, Calvert CM, Dorans A, Roberts MR, Bowles DJ. A novel tomato gene that rapidly responds to wound- and pathogen-related signals. Plant J. 14: 137-142 (1998).

O'Malley RC, Rodriguez FI, Esch JJ, Binder BM, O'Donnell P, Klee HJ, Bleecker AB. Ethylene-binding activity, gene expression levels, and receptor system output for ethylene receptor family members from Arabidopsis and tomato. Plant J. 41: 651-659 (2005).

O'Neill SD, Tong Y, Sporlein B, Forkmann G, Yoder JI. Molecular genetic analysis of chalcone synthase in Lycopersicon esculentum and an anthocyanin-deficient mutant. Mol. Gen. Genet. 224: 279-288 (1990).

Obiadalla-Ali H, Fernie AR, Kossmann J, Lloyd JR. Developmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits. Physiol. Plant. 120: 196-204 (2004).

Obiadalla-Ali H, Fernie AR, Lytovchenko A, Kossmann J, Lloyd JR. Inhibition of chloroplastic fructose 1,6-bisphosphatase in tomato fruits leads to decreased fruit size, but only small changes in carbohydrate metabolism. Planta 219: 533-540 (2004).

Odanaka S, Bennett AB, Kanayama Y. Distinct physiological roles of fructokinase isozymes revealed by gene-specific suppression of frk1 and frk2 expression in tomato. Plant Physiol. 129: 1119-1126 (2002).

Oetiker JH, Olson DC, Shiu OY, Yang SF. Differential induction of seven 1-aminocyclopropane-1-carboxylate synthase genes by elicitor in suspension cultures of tomato (Lycopersicon esculentum). Plant Mol. Biol. 34: 275-286 (1997).

Oguri S, Kamoshida M, Nagata Y, Momonoki YS, Kamimura H. Characterization and sequence of tomato 2S seed albumin: a storage protein with sequence similarities to the fruit lectin. Planta 216: 976-984 (2003).

Oh HS, Collmer A. Basal resistance against bacteria in Nicotiana benthamiana leaves is accompanied by reduced vascular staining and suppressed by multiple Pseudomonas syringae type III secretion system effector proteins. Plant J. 44: 348-359 (2005).

Oh K, Ivanchenko MG, White TJ, Lomax TL. The diageotropica gene of tomato encodes a cyclophilin: a novel player in auxin signaling. Planta 224: 133-144 (2006).

Ohnishi T, Nomura T, Watanabe B, Ohta D, Yokota T, Miyagawa H, Sakata K, Mizutani M. Tomato cytochrome P450 CYP734A7 functions in brassinosteroid catabolism. Phytochemistry 67: 1895-1906 (2006).

Olías R, Eljakaoui Z, Li J, De Morales PA, Marin-Manzano MC, Pardo JM, Belver A. The plasma membrane Na+/H+ antiporter SOS1 is essential for salt tolerance in tomato and affects the partitioning of Na+ between plant organs. Plant Cell Environ. 32: 904-916 (2009).

Olimpieri I, Siligato F, Caccia R, Soressi GP, Mazzucato A, Mariotti L, Ceccarelli N. Tomato fruit set driven by pollination or by the parthenocarpic fruit allele are mediated by transcriptionally regulated gibberellin biosynthesis. Planta 226: 877-888 (2007).

Oller ALW, Agostini E, Talano MA, Capozucca C, Milrad SR, Tigier HA, Medina MI. Overexpression of a basic peroxidase in transgenic tomato (Lycopersicon esculentum Mill. cv. Pera) hairy roots increases phytoremediation of phenol. Plant Sci. 169: 1102-1111 (2005).

Omer ZS, Bjorkman PO, Nicander B, Tillberg E, Gerhardson B. 5'-Deoxyisopentenyladenosine and other cytokinins in culture filtrates of the bacterium Pantoea agglomerans. Physiol. Plant. 121: 439-447 (2004).

Onate-Sanchez L, Anderson JP, Young J, Singh KB. AtERF14, a member of the ERF family of transcription factors, plays a nonredundant role in plant defense. Plant Physiol. 143: 400-409 (2007).

Onate-Sanchez L, Singh KB. Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection. Plant Physiol. 128: 1313-1322 (2002).

Onus AN, Pickersgill B. Unilateral incompatibility in Capsicum (Solanaceae): occurrence and taxonomic distribution. Ann. Bot. (Lond.) 94: 289-295 (2004).

Oostende CV, Widhalm JR, Basset GJ. Detection and quantification of vitamin K(1) quinol in leaf tissues. Phytochemistry 69: 2457-2462 (2008).

Orfila C, Huisman MM, Willats WG, Van Alebeek GJ, Schols HA, Seymour GB, Knox JP. Altered cell wall disassembly during ripening of Cnr tomato fruit: implications for cell adhesion and fruit softening. Planta 215: 440-447 (2002).

Orfila C, Knox JP. Spatial regulation of pectic polysaccharides in relation to pit fields in cell walls of tomato fruit pericarp. Plant Physiol. 122: 775-782 (2000).

Orozco-Cardenas ML, Narvaez-Vasquez J, Ryan CA. Hydrogen peroxide acts as a second messenger for the induction of defense genes in tomato plants in response to wounding, systemin, and methyl jasmonate. Plant Cell 13: 179-191 (2001).

Orozco-Cardenas ML, Ryan CA. Nitric oxide negatively modulates wound signaling in tomato plants. Plant Physiol. 130: 487-493 (2002).

Orozco-Cardenas ML, Ryan CA. Polygalacturonase {beta}-subunit antisense gene expression in tomato plants leads to a progressive enhanced wound response and necrosis in leaves and abscission of developing flowers. Plant Physiol. 133: 693-701 (2003).

Orsomando G, Bozzo GG, de la Garza RD, Basset GJ, Quinlivan EP, Naponelli V, Rebeille F, Ravanel S, Gregory JF 3rd, Hanson AD. Evidence for folate-salvage reactions in plants. Plant J. 46: 426-435 (2006).

Orzaez D, Mirabel S, Wieland WH, Granell A. Agroinjection of tomato fruits. A tool for rapid functional analysis of transgenes directly in fruit. Plant Physiol. 140: 3-11 (2006).

Outchkourov NS, Peters J, De Jong J, Rademakers W, Jongsma MA. The promoter-terminator of chrysanthemum rbcS1 directs very high expression levels in plants. Planta 216: 1003-1012 (2003).

Ouziad F, Hildebrandt U, Schmelzer E, Bothe H. Differential gene expressions in arbuscular mycorrhizal-colonized tomato grown under heavy metal stress. J. Plant Physiol. 162: 634-649 (2005).

Overy SA, Walker HJ, Malone S, Howard TP, Baxter CJ, Sweetlove LJ, Hill SA, Quick WP. Application of metabolite profiling to the identification of traits in a population of tomato introgression lines. J. Exp. Bot. 56: 287-296 (2005).

Pachepsky LB, Acock B. An adequate model of photosynthesis. 2. Dependence of parameters on environmental factors. Agicultural Systems 50: 227-238 (1996).

País SM, Gonzalez MA, Tellez-Inon MT, Capiati DA. Characterization of potato (Solanum tuberosum) and tomato (Solanum lycopersicum) protein phosphatases type 2A catalytic subunits and their involvement in stress responses. Planta 230: 13-25 (2009).

Pal M, Horvath E, Janda T, Paldi E, Szalai G. Cadmium stimulates the accumulation of salicylic acid and its putative precursors in maize (Zea mays) plants. Physiol. Plant. 125: 356-364 (2005).

Paran I, van der Knaap E. Genetic and molecular regulation of fruit and plant domestication traits in tomato and pepper. J. Exp. Bot. 58: 3841-3852 (2007).

Park EJ, Jekncic Z, Chen TH, Murata N. The codA transgene for glycinebetaine synthesis increases the size of flowers and fruits in tomato. Plant Biotechnol. J. 5: 422-430 (2007).

Park EJ, Jeknic Z, Chen TH. Exogenous application of glycinebetaine increases chilling tolerance in tomato plants. Plant Cell Physiol. 47: 706-714 (2006).

Park EJ, Jeknic Z, Pino MT, Murata N, Chen TH. Glycinebetaine accumulation is more effective in chloroplasts than in the cytosol for protecting transgenic tomato plants against abiotic stress. Plant Cell Environ. 30: 994-1005 (2007).

Park EJ, Jeknic Z, Sakamoto A, Denoma J, Yuwansiri R, Murata N, Chen TH. Genetic engineering of glycinebetaine synthesis in tomato protects seeds, plants, and flowers from chilling damage. Plant J. 40: 474-487 (2004).

Park S, Cheng NH, Pittman JK, Yoo KS, Park J, Smith RH, Hirschi KD. Increased calcium levels and prolonged shelf life in tomatoes expressing Arabidopsis H+/Ca2+ transporters. Plant Physiol. 139: 1194-1206 (2005).

Parnis A, Cohen O, Gutfinger T, Hareven D, Zamir D, Lifschitz E. The dominant developmental mutants of tomato, Mouse-ear and Curl, are associated with distinct modes of abnormal transcriptional regulation of a Knotted gene. Plant Cell 9: 2143-2158 (1997).

Parra MM, del Pozo O, Luna R, Godoy JA, Pintor-Toro JA. Structure of the dehydrin tas14 gene of tomato and its developmental and environmental regulation in transgenic tobacco. Plant Mol. Biol. 32: 453-460 (1996).

Parry S, Newbigin E, Currie G, Bacic A, Oxley D. Identification of active-site histidine residues of a self-incompatibility ribonuclease from a wild tomato. Plant Physiol. 115: 1421-1429 (1997).

Paschold A, Halitschke R, Baldwin IT. Co(i)-ordinating defenses: NaCOI1 mediates herbivore- induced resistance in Nicotiana attenuata and reveals the role of herbivore movement in avoiding defenses. Plant J. 51: 79-91 (2007).

Patel S, Brkljacic J, Gindullis F, Rose A, Meier I. The plant nuclear envelope protein MAF1 has an additional location at the Golgi and binds to a novel Golgi-associated coiled-coil protein. Planta 222: 1028-1040 (2005).

Patel S, Rose A, Meulia T, Dixit R, Cyr RJ, Meier I. Arabidopsis WPP-domain proteins are developmentally associated with the nuclear envelope and promote cell division. Plant Cell 16: 3260-3273 (2004).

Paterson AH, DeVerna JW, Lanini B, Tanksley SD. Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. Genetics 124: 735-742 (1990).

Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksley SD. Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335: 721-726 (1988).

Patino S, Grace J. The cooling of convolvulaceous flowers in a tropical environment. Plant Cell Environ. 25: 41-51 (2002).

Paul M, Pellny T, Goddijn O. Enhancing photosynthesis with sugar signals. Trends Plant Sci. 6: 197-200 (2001).

Pearce G, Bhattacharya R, Chen YC, Barona G, Yamaguchi Y, Ryan CA. Isolation and characterization of hydroxyproline-rich glycopeptide signals in black nightshade leaves. Plant Physiol. 150: 1422-1433 (2009).

Peiser G, Fa Yang S. Evidence for 1-(malonylamino)cyclopropane-1-carboxylic acid being the major conjugate of aminocyclopropane-1-carboxylic acid in tomato fruit. Plant Physiol. 116: 1527-1532 (1998).

Pennycooke JC, Cheng H, Roberts SM, Yang Q, Rhee SY, Stockinger EJ. The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements. Plant Mol. Biol. 67: 483-497 (2008).

Pennycooke JC, Jones ML, Stushnoff C. Down-regulating {alpha}-galactosidase enhances freezing tolerance in transgenic petunia. Plant Physiol. 133: 901-909 (2003).

Perchepied L, Kroj T, Tronchet M, Loudet O, Roby D. Natural variation in partial resistance to Pseudomonas syringae is controlled by two major QTLs in Arabidopsis thaliana. PLoS ONE 1: e123 (2006).

Perea Arango I, Loza Rubio E, Rojas Anaya E, Olivera Flores T, Gonzalez de la Vara L, Gomez Lim MA. Expression of the rabies virus nucleoprotein in plants at high-levels and evaluation of immune responses in mice. Plant Cell Rep. 27: 677-685 (2008).

Peres LEP, Carvalho RF, Zsogon A, Bermudez-Zambramo OD, Robles WGR, Tavares S. Grafting of tomato mutants onto potato rootstocks: An approach to study leaf-derived signaling on tuberization. Plant Sci. 169: 680-688 (2005).

Perez-Alfocea F, Larher F. Sucrose and proline accumulation and sugar efflux in tomato leaf discs affected by NaCl and polyethylene glycol 6000 iso-osmotic stresses. Plant Sci. 107: 9-15 (1995).

Perez-Alfocea F, Larher F. Effects of phlorizin and p-chloromercuribenzenesulfonic acid on sucrose and proline accumulation in detached tomato leaves submitted to NaCl and osmotic stresses. J. Plant Physiol. 145: 367-373 (1995).

Perez-Alfocea F, Santa-Cruz A, Guerrier G, Bolarin MC. NaCl stress-induced organic solute changes on leaves and calli of Lycopersicon esculentum, L. Pennellii and their interspecific hybrid. J. Plant Physiol. 143: 106-111 (1994).

Perez-Garcia A, Pereira S, Pissarra J, Gutierrez AG, Cazorla FM, Salema R, de Vicente A, Canovas FM. Cytosolic localization in tomato mesophyll cells of a novel glutamine synthetase induced in response to bacterial infection or phosphinothricin treatment. Planta 206: 426-434 (1998).

Perez-Gilabert M, Veldink GA, Vliegenthart JF. Protection by different agents against inactivation of lipoxygenase by hydrogen peroxide. Lipids 31: 1245-1250 (1996).

Perrotta G, Ninu L, Flamma F, Weller JL, Kendrick RE, Nebuloso E, Giuliano G. Tomato contains homologues of Arabidopsis cryptochromes 1 and 2. Plant Mol. Biol. 42: 765-773 (2000).

Perumal D, Lim CS, Chow VT, Sakharkar KR, Sakharkar MK. A combined computational-experimental analyses of selected metabolic enzymes in Pseudomonas species. Int. J. Biol. Sci. 4: 309-317 (2008).

Peters JL, Szell M, Kendrick RE. The expression of light-regulated genes in the high-pigment-1 mutant of tomato. Plant Physiol. 117: 797-807 (1998).

Peters SA, Datema E, Szinay D, van Staveren MJ, Schijlen EG, van Haarst JC, Hesselink T, Abma-Henkens MH, Bai Y, de Jong H, Stiekema WJ, Klein Lankhorst RM, van Ham RC. Solanum lycopersicum cv. Heinz 1706 chromosome 6: distribution and abundance of genes and retrotransposable elements. Plant J. 58: 857-869 (2009).

Peters SA, van Haarst JC, Jesse TP, Woltinge D, Jansen K, Hesselink T, van Staveren MJ, Abma-Henkens MH, Klein-Lankhorst RM. TOPAAS, a tomato and potato assembly assistance system for selection and finishing of bacterial artificial chromosomes. Plant Physiol. 140: 805-817 (2006).

Petreikov M, Shen S, Yeselson Y, Levin I, Bar M, Schaffer AA. Temporally extended gene expression of the ADP-Glc pyrophosphorylase large subunit (AgpL1) leads to increased enzyme activity in developing tomato fruit. Planta 224: 1465-1479 (2006).

Phan TD, Bo W, West G, Lycett GW, Tucker GA. Silencing of the major salt-dependent isoform of pectinesterase in tomato alters fruit softening. Plant Physiol. 144: 1960-1967 (2007).

Picard K, Ponchet M, Blein JP, Rey P, Tirilly Y, Benhamou N. Oligandrin. A proteinaceous molecule produced by the mycoparasite Pythium oligandrum induces resistance to Phytophthora parasitica infection in tomato plants. Plant Physiol. 124: 379-396 (2000).

Pich A, Manteuffel R, Hillmer S, Scholz G, Schmidt W. Fe homeostasis in plant cells: does nicotianamine play multiple roles in the regulation of cytoplasmic Fe concentration? Planta 213: 967-976 (2001).

Pickard WF. A novel class of fast electrical events recorded by electrodes implanted in tomato shoots. Aust. J. Plant Physiol. 28: 121-129 (2001).

Piechulla B, Merforth N, Rudolph B. Identification of tomato Lhc promoter regions necessary for circadian expression. Plant Mol. Biol. 38: 655-662 (1998).

Pieterse CM, van Wees SC, van Pelt JA, Knoester M, Laan R, Gerrits H, Weisbeek PJ, van Loon LC. A novel signaling pathway controlling induced systemic resistance in Arabidopsis. Plant Cell 10: 1571-1580 (1998).

Pike CS, Grieve J, Badger MR, Price GD. Thermoprotective properties of small heat shock proteins from rice, tomato and Synechocystis sp PCC6803 overexpressed in, and isolated from, Escherichia coli. Aust. J. Plant Physiol. 28: 1219-1229 (2001).

Pike SM, Zhang XC, Gassmann W. Electrophysiological characterization of the Arabidopsis avrRpt2-specific hypersensitive response in the absence of other bacterial signals. Plant Physiol. 138: 1009-1017 (2005).

Pilcher RL, Moxon S, Pakseresht N, Moulton V, Manning K, Seymour G, Dalmay T. Identification of novel small RNAs in tomato (Solanum lycopersicum). Planta 226: 709-717 (2007).

Pinto LV, Da Silva EA, Davide AC, De Jesus VA, Toorop PE, Hilhorst HW. Mechanism and control of Solanum lycocarpum seed germination. Ann. Bot. (Lond.) 100: 1175-1187 (2007).

Plaut Z, Grava A, Yehezkel C, Matan E. How do salinity and water stress affect transport of water, assimilates and ions to tomato fruits?. Physiol. Plant. 122: 429-442 (2004).

Ponstein AS, Bres-Vloemans SA, Sela-Buurlage MB, van den Elzen PJ, Melchers LS, Cornelissen BJ. A novel pathogen- and wound-inducible tobacco (Nicotiana tabacum) protein with antifungal activity. Plant Physiol. 104: 109-118 (1994).

Popp C, Burghardt M, Friedmann A, Riederer M. Characterization of hydrophilic and lipophilic pathways of Hedera helix L. cuticular membranes: permeation of water and uncharged organic compounds. J. Exp. Bot. 56: 2797-2806 (2005).

Port M, Tripp J, Zielinski D, Weber C, Heerklotz D, Winkelhaus S, Bublak D, Scharf KD. Role of Hsp17.4-CII as coregulator and cytoplasmic retention factor of tomato heat stress transcription factor HsfA2. Plant Physiol. 135: 1457-1470 (2004).

Pozo MJ, Cordier C, Dumas-Gaudot E, Gianinazzi S, Barea JM, Azcon-Aguilar C. Localized versus systemic effect of arbuscular mycorrhizal fungi on defence responses to Phytophthora infection in tomato plants. J. Exp. Bot. 53: 525-534 (2002).

Pratt LH, Cordonnier-Pratt MM, Hauser B, Caboche M. Tomato contains two differentially expressed genes encoding B-type phytochromes, neither of which can be considered an ortholog of Arabidopsis phytochrome B. Planta 197: 203-206 (1995).

Pratta G, Zorzoli R, Boggio SB, Picardi LA, Valle EM. Glutamine and glutamate levels and related metabolizing enzymes in tomato fruits with different shelf-life. Sci. Hortic. 100: 341-347 (2004).

Pressman E, Peet MM, Pharr DM. The effect of heat stress on tomato pollen characteristics is associated with changes in carbohydrate concentration in the developing anthers. Ann. Bot. (Lond.) 90: 631-636 (2002).

Price LE, Bacon MA, Young PC, Davies WJ. High-resolution analysis of tomato leaf elongation: the application of novel time-series analysis techniques. J. Exp. Bot. 52: 1925-1932 (2001).

Proels RK, Hause B, Berger S, Roitsch T. Novel mode of hormone induction of tandem tomato invertase genes in floral tissues. Plant Mol. Biol. 52: 191-201 (2003).

Proels RK, Roitsch T. Extracellular invertase LIN6 of tomato: a pivotal enzyme for integration of metabolic, hormonal, and stress signals is regulated by a diurnal rhythm. J. Exp. Bot. 60: 1555-1567 (2009).

Prudent M, Causse M, Genard M, Tripodi P, Grandillo S, Bertin N. Genetic and physiological analysis of tomato fruit weight and composition: influence of carbon availability on QTL detection. J. Exp. Bot. 60: 923-937 (2009).

Qi X, Tai CY, Wasserman BP. Plasma membrane intrinsic proteins of Beta vulgaris L. Plant Physiol. 108: 387-392 (1995).

Qi Y, Ding B. Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA. Plant Cell 15: 1360-1374 (2003).

Qiao H, Wang F, Zhao L, Zhou J, Lai Z, Zhang Y, Robbins TP, Xue Y. The F-box protein AhSLF-S2 controls the pollen function of S-RNase-based self-incompatibility. Plant Cell 16: 2307-2322 (2004).

Qin Q, Bergmann CW, Rose JK, Saladie M, Kolli VS, Albersheim P, Darvill AG, York WS. Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase. Plant J. 34: 327-338 (2003).

Qu GQ, Liu X, Zhang YL, Yao D, Ma QM, Yang MY, Zhu WH, Yu S, Luo YB. Evidence for programmed cell death and activation of specific caspase-like enzymes in the tomato fruit heat stress response. Planta 229: 1269-1279 (2009).

Quinet M, Dubois C, Goffin MC, Chao J, Dielen V, Batoko H, Boutry M, Kinet JM. Characterization of tomato (Solanum lycopersicum L.) mutants affected in their flowering time and in the morphogenesis of their reproductive structure. J. Exp. Bot. 57: 1381-1390 (2006).

Quinlivan EP, Roje S, Basset G, Shachar-Hill Y, Gregory JF 3rd, Hanson AD. The folate precursor p-aminobenzoate is reversibly converted to its glucose ester in the plant cytosol. J. Biol. Chem. 278: 20731-20737 (2003).

Quiroga M, Guerrero C, Botella MA, Barcelo A, Amaya I, Medina MI, Alonso FJ, de Forchetti SM, Tigier H, Valpuesta V. A tomato peroxidase involved in the synthesis of lignin and suberin. Plant Physiol. 122: 1119-1128 (2000).

Rahayu YS, Walch-Liu P, Neumann G, Romheld V, von Wiren N, Bangerth F. Root-derived cytokinins as long-distance signals for NO3--induced stimulation of leaf growth. J. Exp. Bot. 56: 1143-1152 (2005).

Rainwater DT, Gossett DR, Millhollon EP, Hanna HY, Banks SW, Lucas MC. The relationship between yield and the antioxidant defense system in tomatoes grown under heat stress. Free Radic. Res. 25: 421-435 (1996).

Rajasekaran LR, Aspinall D, Paleg LG. Physiological mechanism of tolerance of Lycopersicon spp. exposed to salt stress. Can. J. Plant Sci. 80: 151-159 (2000).

Ralley L, Enfissi EM, Misawa N, Schuch W, Bramley PM, Fraser PD. Metabolic engineering of ketocarotenoid formation in higher plants. Plant J. 39: 477-486 (2004).

Ramakrishna W, Deng Z, Ding CK, Handa AK, Ozminkowski RH Jr. A novel small heat shock protein gene, vis1, contributes to pectin depolymerization and juice viscosity in tomato fruit. Plant Physiol. 131: 725-735 (2003).

Rao GU, Paran I. Polygalacturonase: a candidate gene for the soft flesh and deciduous fruit mutation in Capsicum. Plant Mol. Biol. 51: 135-141 (2003).

Rastogi R, Dulson J, Rothstein SJ. Cloning of tomato (Lycopersicon esculentum Mill.) arginine decarboxylase gene and its expression during fruit ripening. Plant Physiol. 103: 829-834 (1993).

Real MD, Company P, Garcia-Agustin P, Bennett AB, Gonzalez-Bosch C. Characterization of tomato endo-beta-1,4-glucanase Cel1 protein in fruit during ripening and after fungal infection. Planta 220: 80-86 (2004).

Rebers M, Kaneta T, Kawaide H, Yamaguchi S, Yang YY, Imai R, Sekimoto H, Kamiya Y. Regulation of gibberellin biosynthesis genes during flower and early fruit development of tomato. Plant J. 17: 241-250 (1999).

Reddy VS, Ali GS, Reddy AS. Characterization of a pathogen-induced calmodulin-binding protein: mapping of four Ca2+-dependent calmodulin-binding domains. Plant Mol. Biol. 52: 143-159 (2003).

Rehman RU, Stigliano E, Lycett GW, Sticher L, Sbano F, Faraco M, Dalessandro G, Di Sansebastiano GP. Tomato Rab11a characterization evidenced a difference between SYP121-dependent and SYP122-dependent exocytosis. Plant Cell Physiol. 49: 751-766 (2008).

Reinhardt D, Mandel T, Kuhlemeier C. Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell 12: 507-518 (2000).

Reiser L, Sanchez-Baracaldo P, Hake S. Knots in the family tree: evolutionary relationships and functions of knox homeobox genes. Plant Mol. Biol. 42: 151-166 (2000).

Rep M, Dekker HL, Vossen JH, De Boer AD, Houterman PM, Speijer D, Back JW, De Koster CG, Cornelissen BJ. Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiol. 130: 904-917 (2002).

Requena ME, Egea-Gilabert C, Candela ME. Nitric oxide generation during the interaction with Phytophthora capsici of two Capsicum annuum varieties showing different degrees of sensitivity. Physiol. Plant. 124: 50-60 (2005).

Rice MS, Lomax TL. The auxin-resistant diageotropica mutant of tomato responds to gravity via an auxin-mediated pathway. Planta 210: 906-913 (2000).

Richter U, Sonnewald U, Drager B. Calystegines in potatoes with genetically engineered carbohydrate metabolism. J. Exp. Bot. 58: 1603-1615 (2007).

Ries S, Savithiry S, Wert V, Widders I. Rapid induction of ion pulses in tomato, cucumber, and maize plants following a foliar application of L(+)-adenosine. Plant Physiol. 101: 49-55 (1993).

Rieu I, Mariani C, Weterings K. Expression analysis of five tobacco EIN3 family members in relation to tissue-specific ethylene responses. J. Exp. Bot. 54: 2239-2244 (2003).

Rijpkema AS, Royaert S, Zethof J, van der Weerden G, Gerats T, Vandenbussche M. Analysis of the petunia TM6 MADS box gene reveals functional divergence within the DEF/AP3 lineage. Plant Cell 18: 1819-1832 (2006).

Ringli C, Keller B. Specific interaction of the tomato bZIP transcription factor VSF-1 with a non-palindromic DNA sequence that controls vascular gene expression. Plant Mol. Biol. 37: 977-988 (1998).

Rinne PL, van den Boogaard R, Mensink MG, Kopperud C, Kormelink R, Goldbach R, van der Schoot C. Tobacco plants respond to the constitutive expression of the tospovirus movement protein NS with a heat-reversible sealing of plasmodesmata that impairs development. Plant J. 43: 688-707 (2005).

Rivas S, Romeis T, Jones JD. The Cf-9 disease resistance protein is present in an approximately 420-kilodalton heteromultimeric membrane-associated complex at one molecule per complex. Plant Cell 14: 689-702 (2002).

Rivero RM, Ruiz JM, Romero LM. Importance of N source on heat stress tolerance due to the accumulation of proline and quaternary ammonium compounds in tomato plants. Plant Biol. (Stuttg.) 6: 702-707 (2004).

Rivero RM, Sanchez E, Ruiz JM, Romero L. Iron metabolism in tomato and watermelon plants: Influence of nitrogen source. J. Plant Nutr. 26: 2413-2424 (2003).

Rivoal J, Hanson AD. Metabolic control of anaerobic glycolysis. Overexpression of lactate dehydrogenase in transgenic tomato roots supports the Davies-Roberts hypothesis and points to a critical role for lactate secretion. Plant Physiol. 106: 1179-1185 (1994).

Robatzek S, Bittel P, Chinchilla D, Kochner P, Felix G, Shiu SH, Boller T. Molecular identification and characterization of the tomato flagellin receptor LeFLS2, an orthologue of Arabidopsis FLS2 exhibiting characteristically different perception specificities. Plant Mol. Biol. 64: 539-547 (2007).

Robb J, Lee B, Nazar RN. Gene suppression in a tolerant tomato-vascular pathogen interaction. Planta 226: 299-309 (2007).

Roberts MR, Bowles DJ. Fusicoccin, 14-3-3 proteins, and defense responses in tomato plants. Plant Physiol. 119: 1243-1250 (1999).

Rochange SF, Wenzel CL, McQueen-Mason SJ. Impaired growth in transgenic plants over-expressing an expansin isoform. Plant Mol. Biol. 46: 581-589 (2001).

Rodriguez-Concepcion M, Ahumada I, Diez-Juez E, Sauret-Gueto S, Lois LM, Gallego F, Carretero-Paulet L, Campos N, Boronat A. 1-Deoxy-D-xylulose 5-phosphate reductoisomerase and plastid isoprenoid biosynthesis during tomato fruit ripening. Plant J. 27: 213-222 (2001).

Rodriguez-Concepcion M, Gruissem W. Arachidonic acid alters tomato HMG expression and fruit growth and induces 3-hydroxy-3-methylglutaryl coenzyme A reductase-independent lycopene accumulation. Plant Physiol. 119: 41-48 (1999).

Rodriguez-Concepcion M, Querol J, Lois LM, Imperial S, Boronat A. Bioinformatic and molecular analysis of hydroxymethylbutenyl diphosphate synthase (GCPE) gene expression during carotenoid accumulation in ripening tomato fruit. Planta 217: 476-482 (2003).

Roessner-Tunali U, Hegemann B, Lytovchenko A, Carrari F, Bruedigam C, Granot D, Fernie AR. Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol. 133: 84-99 (2003).

Rohdich F, Wungsintaweekul J, Luttgen H, Fischer M, Eisenreich W, Schuhr CA, Fellermeier M, Schramek N, Zenk MH, Bacher A. Biosynthesis of terpenoids: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase from tomato. Proc. Natl. Acad. Sci. U.S.A. 97: 8251-8256 (2000).

Rojas A, Almoguera C, Carranco R, Scharf KD, Jordano J. Selective activation of the developmentally regulated Ha hsp17.6 G1 promoter by heat stress transcription factors. Plant Physiol. 129: 1207-1215 (2002).

Rollfinke IK, Pfitzner UM. Structure of a heptaubiquitin gene from tomato. Plant Physiol. 104: 299-300 (1994).

Romeis T, Piedras P, Jones JD. Resistance gene-dependent activation of a calcium-dependent protein kinase in the plant defense response. Plant Cell 12: 803-816 (2000).

Romeis T, Piedras P, Zhang S, Klessig DF, Hirt H, Jones JD. Rapid Avr9- and Cf-9 -dependent activation of MAP kinases in tobacco cell cultures and leaves: convergence of resistance gene, elicitor, wound, and salicylate responses. Plant Cell 11: 273-287 (1999).

Rommens CM, Salmeron JM, Baulcombe DC, Staskawicz BJ. Use of a gene expression system based on potato virus X to rapidly identify and characterize a tomato Pto homolog that controls fenthion sensitivity. Plant Cell 7: 249-257 (1995).

Rommens CM, Salmeron JM, Oldroyd GE, Staskawicz BJ. Intergeneric transfer and functional expression of the tomato disease resistance gene Pto. Plant Cell 7: 1537-1544 (1995).

Ron M, Avni A. The receptor for the fungal elicitor ethylene-inducing xylanase is a member of a resistance-like gene family in tomato. Plant Cell 16: 1604-1615 (2004).

Ronen G, Cohen M, Zamir D, Hirschberg J. Regulation of carotenoid biosynthesis during tomato fruit development: expression of the gene for lycopene epsilon-cyclase is down-regulated during ripening and is elevated in the mutant Delta. Plant J. 17: 341-351 (1999).

Rontein D, Dieuaide-Noubhani M, Dufourc EJ, Raymond P, Rolin D. The metabolic architecture of plant cells: stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells. J. Biol. Chem. 277: 43948-43960 (2002).

Rontein D, Wu WI, Voelker DR, Hanson AD. Mitochondrial phosphatidylserine decarboxylase from higher plants. Functional complementation in yeast, localization in plants, and overexpression in Arabidopsis. Plant Physiol. 132: 1678-1687 (2003).

Rosado A, Amaya I, Valpuesta V, Cuartero J, Botella MA, Borsani O. ABA- and ethylene-mediated responses in osmotically stressed tomato are regulated by the TSS2 and TOS1 loci. J. Exp. Bot. 57: 3327-3335 (2006).

Rosati C, Aquilani R, Dharmapuri S, Pallara P, Marusic C, Tavazza R, Bouvier F, Camara B, Giuliano G. Metabolic engineering of beta-carotene and lycopene content in tomato fruit. Plant J. 24: 413-420 (2000).

Rose A, Gindullis F, Meier I. A novel alpha-helical protein, specific to and highly conserved in plants, is associated with the nuclear matrix fraction. J. Exp. Bot. 54: 1133-1141 (2003).

Rose JK, Bashir S, Giovannoni JJ, Jahn MM, Saravanan RS. Tackling the plant proteome: practical approaches, hurdles and experimental tools. Plant J. 39: 715-733 (2004).

Rose JK, Cosgrove DJ, Albersheim P, Darvill AG, Bennett AB. Detection of expansin proteins and activity during tomato fruit ontogeny. Plant Physiol. 123: 1583-1592 (2000).

Rossi M, Iusem ND. Tomato (Lycopersicon esculentum) genomic clone homologous to a gene encoding an abscisic acid-induced protein. Plant Physiol. 104: 1073-1074 (1994).

Rotblat B, Enshell-Seijffers D, Gershoni JM, Schuster S, Avni A. Identification of an essential component of the elicitation active site of the EIX protein elicitor. Plant J. 32: 1049-1055 (2002).

Rowland O, Ludwig AA, Merrick CJ, Baillieul F, Tracy FE, Durrant WE, Fritz-Laylin L, Nekrasov V, Sjolander K, Yoshioka H, Jones JD. Functional analysis of Avr9/cf-9 rapidly elicited genes identifies a protein kinase, ACIK1, that is essential for full Cf-9-dependent disease resistance in tomato. Plant Cell 17: 295-310 (2005).

Rubio L, Rosado A, Linares-Rueda A, Borsani O, Garcia-Sanchez MJ, Valpuesta V, Fernandez JA, Botella MA. Regulation of K+ transport in tomato roots by the TSS1 locus. Implications in salt tolerance. Plant Physiol. 134: 452-459 (2004).

Rudrappa T, Czymmek KJ, Pare PW, Bais HP. Root secreted malic acid recruits beneficial soil bacteria. Plant Physiol. 148: 1547-1556 (2008).

Ruiz JM, Blasco B, Rivero RM, Romero L. Nicotine-free and salt-tolerant tobacco plants obtained by grafting to salinity-resistant rootstocks of tomato. Physiol. Plant. 124: 465-475 (2005).

Runyon JB, Mescher MC, De Moraes CM. Volatile chemical cues guide host location and host selection by parasitic plants. Science 313: 1964-1967 (2006).

Rutschmann F, Stalder U, Piotrowski M, Oecking C, Schaller A. LeCPK1, a calcium-dependent protein kinase from tomato. Plasma membrane targeting and biochemical characterization. Plant Physiol. 129: 156-168 (2002).

Ryu CM, Anand A, Kang L, Mysore KS. Agrodrench: a novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse Solanaceous species. Plant J. 40: 322-331 (2004).

Sabehat A, Lurie S, Weiss D. Expression of small heat-shock proteins at low temperatures. A possible role in protecting against chilling injuries. Plant Physiol. 117: 651-658 (1998).

Sabehat A, Weiss D, Lurie S. The correlation between heat-shock protein accumulation and persistence and chilling tolerance in tomato fruit. Plant Physiol. 110: 531-537 (1996).

Sagi M, Davydov O, Orazova S, Yesbergenova Z, Ophir R, Stratmann JW, Fluhr R. Plant respiratory burst oxidase homologs impinge on wound responsiveness and development in Lycopersicon esculentum. Plant Cell 16: 616-628 (2004).

Sagi M, Fluhr R. Superoxide production by plant homologues of the gp91(phox) NADPH oxidase. Modulation of activity by calcium and by tobacco mosaic virus infection. Plant Physiol. 126: 1281-1290 (2001).

Sagi M, Fluhr R, Lips SH. Aldehyde oxidase and xanthine dehydrogenase in a flacca tomato mutant with deficient abscisic acid and wilty phenotype. Plant Physiol. 120: 571-578 (1999).

Saladie M, Matas AJ, Isaacson T, Jenks MA, Goodwin SM, Niklas KJ, Xiaolin R, Labavitch JM, Shackel KA, Fernie AR, Lytovchenko A, O'Neill MA, Watkins CB, Rose JK. A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiol. 144: 1012-1028 (2007).

Saladie M, Rose JK, Cosgrove DJ, Catala C. Characterization of a new xyloglucan endotransglucosylase/hydrolase (XTH) from ripening tomato fruit and implications for the diverse modes of enzymic action. Plant J. 47: 282-295 (2006).

Sallaud C, Rontein D, Onillon S, Jabes F, Duffe P, Giacalone C, Thoraval S, Escoffier C, Herbette G, Leonhardt N, Causse M, Tissier A. A novel pathway for sesquiterpene biosynthesis from Z,Z-farnesyl pyrophosphate in the wild tomato Solanum habrochaites. Plant Cell 21: 301-317 (2009).

Saltveit ME, Choi YJ, Tomas-Barberan FA. Involvement of components of the phospholipid-signaling pathway in wound-induced phenylpropanoid metabolism in lettuce (Lactuca sativa) leaf tissue. Physiol. Plant. 125: 345-355 (2005).

Samaniego R, Jeong SY, Meier I, de la Espina SM. Dual location of MAR-binding, filament-like protein 1 in Arabidopsis, tobacco, and tomato. Planta 223: 1201-1206 (2006).

Sanchez E, Rivero RM, Ruiz JM, Romero L. Yield and biosynthesis of nitrogenous compounds in fruits of green bean (Phaseolus vulgaris L cv Strike) in response to increasing N fertilisation. J. Sci. Food Agric. 84: 575-580 (2004).

Sanchez E, Ruiz JM, Romero L. Proline metabolism in response to nitrogen toxicity in fruit of French Bean plants (Phaseolus vulgaris L. cv Strike). Sci. Hortic. 93: 225-233 (2002).

Sanchez JP, Duque P, Chua NH. ABA activates ADPR cyclase and cADPR induces a subset of ABA-responsive genes in Arabidopsis. Plant J. 38: 381-395 (2004).

Sanchez-Aguayo I, Rodriguez-Galan JM, Garcia R, Torreblanca J, Pardo JM. Salt stress enhances xylem development and expression of S-adenosyl-L-methionine synthase in lignifying tissues of tomato plants. Planta 220: 278-285 (2004).

Sanchez-Casas P, Klessig DF. A salicylic acid-binding activity and a salicylic acid-inhibitable catalase activity are present in a variety of plant species. Plant Physiol. 106: 1675-1679 (1994).

Sanchez-Hernandez C, Martinez-Gallardo N, Guerrero-Rangel A, Valdes-Rodriguez S, Delano-Frier J. Trypsin and alpha-amylase inhibitors are differentially induced in leaves of amaranth (Amaranthus hypochondriacus) in response to biotic and abiotic stress. Physiol. Plant. 122: 254-264 (2004).

Sandmann G, Romer S, Fraser PD. Understanding carotenoid metabolism as a necessity for genetic engineering of crop plants. Metab. Eng. 8: 291-302 (2006).

Sanjayae , Hsiao PY, Su RC, Ko SS, Tong CG, Yang RY, Chan MT. Overexpression of Arabidopsis thaliana tryptophan synthase beta 1 (AtTSB1) in Arabidopsis and tomato confers tolerance to cadmium stress. Plant Cell Environ. 31: 1074-1085 (2008).

Sanmiya K, Suzuki K, Egawa Y, Shono M. Mitochondrial small heat-shock protein enhances thermotolerance in tobacco plants. FEBS Lett. 557: 265-268 (2004).

Santrucek J, Simanova E, Karbulkova J, Simkova M, Schreiber L. A new technique for measurement of water permeability of stomatous cuticular membranes isolated from Hedera helix leaves. J. Exp. Bot. 55: 1411-1422 (2004).

Sardar HS, Yang J, Showalter AM. Molecular interactions of arabinogalactan-proteins (AGPs) with cortical microtubules and F-actin in Bright Yellow-2 (BY-2) tobacco cultured cells. Plant Physiol. 142: 1469-1479 (2006).

Sarma AD, Sreelakshmi Y, Sharma R. Differential expression and properties of phenylalanine ammonia-lyase isoforms in tomato leaves. Phytochemistry 49: 2233-2243 (1998).

Sarowar S, Oh HW, Cho HS, Baek KH, Seong ES, Joung YH, Choi GJ, Lee S, Choi D. Capsicum annuum CCR4-associated factor CaCAF1 is necessary for plant development and defence response. Plant J. 51: 792-802 (2007).

Sato S, Kamiyama M, Iwata T, Makita N, Furukawa H, Ikeda H. Moderate increase of mean daily temperature adversely affects fruit set of Lycopersicon esculentum by disrupting specific physiological processes in male reproductive development. Ann. Bot. (Lond.) 97: 731-738 (2006).

Sato S, Peet MM, Thomas JF. Determining critical pre- and post-anthesis periods and physiological processes in Lycopersicon esculentum Mill. exposed to moderately elevated temperatures. J. Exp. Bot. 53: 1187-1195 (2002).

Sauerbrunn N, Schlaich NL. PCC1: a merging point for pathogen defence and circadian signalling in Arabidopsis. Planta 218: 552-561 (2004).

Sauret-Gueto S, Botella-Pavia P, Flores-Perez U, Martinez-Garcia JF, San Roman C, Leon P, Boronat A, Rodriguez-Concepcion M. Plastid cues posttranscriptionally regulate the accumulation of key enzymes of the methylerythritol phosphate pathway in Arabidopsis. Plant Physiol. 141: 75-84 (2006).

Scanlon MJ. The polar auxin transport inhibitor N-1-naphthylphthalamic acid disrupts leaf initiation, KNOX protein regulation, and formation of leaf margins in maize. Plant Physiol. 133: 597-605 (2003).

Scarpeci TE, Marro ML, Bortolotti S, Boggio SB, Valle EM. Plant nutritional status modulates glutamine synthetase levels in ripe tomatoes (Solanum lycopersicum cv. Micro-Tom). J. Plant Physiol. 164: 137-145 (2007).

Schaarschmidt S, Roitsch T, Hause B. Arbuscular mycorrhiza induces gene expression of the apoplastic invertase LIN6 in tomato (Lycopersicon esculentum) roots. J. Exp. Bot. 57: 4015-4023 (2006).

Schaefer SC, Gasic K, Cammue B, Broekaert W, van Damme EJ, Peumans WJ, Korban SS. Enhanced resistance to early blight in transgenic tomato lines expressing heterologous plant defense genes. Planta 222: 858-866 (2005).

Schaff JE, Mbeunkui F, Blackburn K, Bird DM, Goshe MB. SILIP: a novel stable isotope labeling method for in planta quantitative proteomic analysis. Plant J. 56: 840-854 (2008).

Schaff JE, Nielsen DM, Smith CP, Scholl EH, Bird DM. Comprehensive transcriptome profiling in tomato reveals a role for glycosyltransferase in Mi-mediated nematode resistance. Plant Physiol. 144: 1079-1092 (2007).

Schaller A, Bergey DR, Ryan CA. Induction of wound response genes in tomato leaves by bestatin, an inhibitor of aminopeptidases. Plant Cell 7: 1893-1898 (1995).

Schaller A, Oecking C. Modulation of plasma membrane H+-ATPase activity differentially activates wound and pathogen defense responses in tomato plants. Plant Cell 11: 263-272 (1999).

Schaub P, Al-Babili S, Drake R, Beyer P. Why is golden rice golden (yellow) instead of red? Plant Physiol. 138: 441-450 (2005).

Schauer N, Zamir D, Fernie AR. Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. J. Exp. Bot. 56: 297-307 (2005).

Scheer JM, Pearce G, Ryan CA. LeRALF, a plant peptide that regulates root growth and development, specifically binds to 25 and 120 kDa cell surface membrane proteins of Lycopersicon peruvianum. Planta 221: 667-674 (2005).

Scheer JM, Ryan CA. A 160-kD systemin receptor on the surface of Lycopersicon peruvianum suspension-cultured cells. Plant Cell 11: 1525-1536 (1999).

Scheets K, Redinbaugh MG. Infectious cDNA transcripts of maize necrotic streak virus: infectivity and translational characteristics. Virology 350: 171-183 (2006).

Schijlen EG, de Vos CH, Martens S, Jonker HH, Rosin FM, Molthoff JW, Tikunov YM, Angenent GC, van Tunen AJ, Bovy AG. RNA interference silencing of chalcone synthase, the first step in the flavonoid biosynthesis pathway, leads to parthenocarpic tomato fruits. Plant Physiol. 144: 1520-1530 (2007).

Schikora A, Schmidt W. Formation of transfer cells and H(+)-ATPase expression in tomato roots under P and Fe deficiency. Planta 215: 304-311 (2002).

Schilmiller AL, Howe GA. Systemic signaling in the wound response. Curr. Opin. Plant Biol. 8: 369-377 (2005).

Schjoerring JK, Husted S, Mack G, Mattsson M. The regulation of ammonium translocation in plants. J. Exp. Bot. 53: 883-890 (2002).

Schlegel TK, Schonherr J, Schreiber L. Size selectivity of aqueous pores in stomatous cuticles of Vicia faba leaves. Planta 221: 648-655 (2005).

Schleucher J, Vanderveer PJ, Sharkey TD. Export of carbon from chloroplasts at night. Plant Physiol. 118: 1439-1445 (1998).

Schmid J, Schaller A, Leibinger U, Boll W, Amrhein N. The in-vitro synthesized tomato shikimate kinase precursor is enzymatically active and is imported and processed to the mature enzyme by chloroplasts. Plant J. 2: 375-383 (1992).

Schmidt S, Baldwin IT. Systemin in black nightshade (Solanum nigrum). The tomato-homologous polypeptide does not mediate direct defense responses. Plant Physiol. 142: 1751-1758 (2006).

Schmidt W, Michalke W, Schikora A. Proton pumping by tomato roots. Effect of Fe deficiency and hormones on the activity and distribution of plasma membrane H+-ATPase in rhizodermal cells. Plant Cell Environ. 26: 361-370 (2003).

Schmitt B, Stadler R, Sauer N. Immunolocalization of solanaceous SUT1 proteins in companion cells and xylem parenchyma: new perspectives for phloem loading and transport. Plant Physiol. 148: 187-199 (2008).

Schmitt D, Callan K, Gruissem W. Molecular and biochemical characterization of tomato farnesyl-protein transferase. Plant Physiol. 112: 767-777 (1996).

Schmitz G, Schmidt M, Feierabend J. Comparison of the expression of a plastidic chaperonin 60 in different plant tissues and under photosynthetic and non-photosynthetic conditions. Planta 200: 326-336 (1996).

Schneider A, Salamini F, Gebhardt C. Expression patterns and promoter activity of the cold-regulated gene ci21A of potato. Plant Physiol. 113: 335-345 (1997).

Schoenmakers HC, Koornneef M, Alefs SJ, Gerrits WF, van der Kop D, Cherel I, Caboche M. Isolation and characterization of nitrate reductase-deficient mutants in tomato (Lycopersicon esculentum Mill.). Mol. Gen. Genet. 227: 458-464 (1991).

Schonherr J, Fernandez V, Schreiber L. Rates of cuticular penetration of chelated Fe(III): role of humidity, concentration, adjuvants, temperature, and type of chelate. J. Agric. Food Chem. 53: 4484-4492 (2005).

Schonherr J, Schreiber L. Size selectivity of aqueous pores in astomatous cuticular membranes isolated from Populus canescens (Aiton) Sm. leaves. Planta 219: 405-411 (2004).

Schornack S, Ballvora A, Gurlebeck D, Peart J, Ganal M, Baker B, Bonas U, Lahaye T. The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3. Plant J. 37: 46-60 (2004).

Schreiber L, Skrabs M, Hartmann KD, Diamantopoulos P, Simanova E, Santrucek J. Effect of humidity on cuticular water permeability of isolated cuticular membranes and leaf disks. Planta 214: 274-282 (2001).

Schroder R, Atkinson RG, Redgwell RJ. Re-interpreting the role of endo-beta-mannanases as mannan endotransglycosylase/hydrolases in the plant cell wall. Ann. Bot. (Lond.) 104: 197-204 (2009).

Schroder R, Wegrzyn TF, Bolitho KM, Redgwell RJ. Mannan transglycosylase: a novel enzyme activity in cell walls of higher plants. Planta 219: 590-600 (2004).

Schroder R, Wegrzyn TF, Sharma NN, Atkinson RG. LeMAN4 endo-beta-mannanase from ripe tomato fruit can act as a mannan transglycosylase or hydrolase. Planta 224: 1091-1102 (2006).

Schuhegger R, Ihring A, Gantner S, Bahnweg G, Knappe C, Vogg G, Hutzler P, Schmid M, Van Breusegem F, Eberl L, Hartmann A, Langebartels C. Induction of systemic resistance in tomato by N-acyl-L-homoserine lactone-producing rhizosphere bacteria. Plant Cell Environ. 29: 909-918 (2006).

Schwacke R, Grallath S, Breitkreuz KE, Stransky E, Stransky H, Frommer WB, Rentsch D. LeProT1, a transporter for proline, glycine betaine, and gamma-amino butyric acid in tomato pollen. Plant Cell 11: 377-392 (1999).

Scippa GS, Di Michele M, Onelli E, Patrignani G, Chiatante D, Bray EA. The histone-like protein H1-S and the response of tomato leaves to water deficit. J. Exp. Bot. 55: 99-109 (2004).

Scippa GS, Griffiths A, Chiatante D, Bray EA. The H1 histone variant of tomato, H1-S, is targeted to the nucleus and accumulates in chromatin in response to water-deficit stress. Planta 211: 173-181 (2000).

Searles PS, Bloom AJ. Nitrate photo-assimilation in tomato leaves under short-term exposure to elevated carbon dioxide and low oxygen. Plant Cell Environ. 26: 1247-1255 (2003).

Sebkova V, Unger C, Hardegger M, Sturm A. Biochemical, physiological, and molecular characterization of sucrose synthase from Daucus carota. Plant Physiol. 108: 75-83 (1995).

Sell S, Hehl R. Functional dissection of a small anaerobically induced bZIP transcription factor from tomato. Eur. J. Biochem. 271: 4534-4544 (2004).

Selth LA, Dogra SC, Rasheed MS, Healy H, Randles JW, Rezaian MA. A NAC domain protein interacts with tomato leaf curl virus replication accessory protein and enhances viral replication. Plant Cell 17: 311-325 (2005).

Selth LA, Dogra SC, Rasheed MS, Randles JW, Rezaian MA. Identification and characterization of a host reversibly glycosylated peptide that interacts with the tomato leaf curl virus V1 protein. Plant Mol. Biol. 61: 297-310 (2006).

Senatore A, Trobacher CP, Greenwood JS. Ricinosomes predict programmed cell death leading to anther dehiscence in tomato. Plant Physiol. 149: 775-790 (2009).

Senthil-Kumar M, Govind G, Kang L, Mysore KS, Udayakumar M. Functional characterization of Nicotiana benthamiana homologs of peanut water deficit-induced genes by virus-induced gene silencing. Planta 225: 523-539 (2007).

Senthil-Kumar M, Udayakumar M. High-throughput virus-induced gene-silencing approach to assess the functional relevance of a moisture stress-induced cDNA homologous to lea4. J. Exp. Bot. 57: 2291-2302 (2006).

Serrani JC, Ruiz-Rivero O, Fos M, García-Martinez JL. Auxin-induced fruit-set in tomato is mediated in part by gibberellins. Plant J. 56: 922-934 (2008).

Sevenier R, van der Meer IM, Bino R, Koops AJ. Increased production of nutriments by genetically engineered crops. J. Am. Coll. Nutr. 21: 199S-204S (2002).

Seymour GB, Manning K, Eriksson EM, Popovich AH, King GJ. Genetic identification and genomic organization of factors affecting fruit texture. J. Exp. Bot. 53: 2065-2071 (2002).

Shabala S, Delbourgo R, Newman I. Observations of bifurcation and chaos in plant physiological responses to light. Aust. J. Plant Physiol. 24: 91-96 (1997).

Shah J, Kachroo P, Klessig DF. The Arabidopsis ssi1 mutation restores pathogenesis-related gene expression in npr1 plants and renders defensin gene expression salicylic acid dependent. Plant Cell 11: 191-206 (1999).

Shalata A, Neumann PM. Exogenous ascorbic acid (vitamin C) increases resistance to salt stress and reduces lipid peroxidation. J. Exp. Bot. 52: 2207-2211 (2001).

Shani Z, Dekel M, Tsabary G, Shoseyov O. Cloning and characterization of elongation specific endo-1,4-beta-glucanase (cel1) from Arabidopsis thaliana. Plant Mol. Biol. 34: 837-842 (1997).

Shapiro TA, Fahey JW, Wade KL, Stephenson KK, Talalay P. Human metabolism and excretion of cancer chemoprotective glucosinolates and isothiocyanates of cruciferous vegetables. Cancer Epidemiol. Biomarkers Prev. 7: 1091-1100 (1998).

Sharma A, Pathak A, Sahgal M, Meyer JM, Wray V, Johri BN. Molecular characterization of plant growth promoting rhizobacteria that enhance peroxidase and phenylalanine ammonia-lyase activities in chile (Capsicum annuum L.) and tomato (Lycopersicon esculentum Mill.). Arch. Microbiol. 188: 483-494 (2007).

Sharma MK, Singh NK, Jani D, Sisodia R, Thungapathra M, Gautam JK, Meena LS, Singh Y, Ghosh A, Tyagi AK, Sharma AK. Expression of toxin co-regulated pilus subunit A (TCPA) of Vibrio cholerae and its immunogenic epitopes fused to cholera toxin B subunit in transgenic tomato (Solanum lycopersicum). Plant Cell Rep. 27: 307-318 (2008).

Sharp RE. Interaction with ethylene: changing views on the role of abscisic acid in root and shoot growth responses to water stress. Plant Cell Environ. 25: 211-222 (2002).

Shaw SL, Long SR. Nod factor inhibition of reactive oxygen efflux in a host legume. Plant Physiol. 132: 2196-2204 (2003).

Sheoran IS, Ross AR, Olson DJ, Sawhney VK. Proteomic analysis of tomato (Lycopersicon esculentum) pollen. J. Exp. Bot. 58: 3525-3535 (2007).

Sherf BA, Bajar AM, Kolattukudy PE. Abolition of an inducible highly anionic peroxidase activity in transgenic tomato. Plant Physiol. 101: 201-208 (1993).

Shi L, Olszewski NE. Gibberellin and abscisic acid regulate GAST1 expression at the level of transcription. Plant Mol. Biol. 38: 1053-1060 (1998).

Shichijo C, Katada K, Tanaka O, Hashimoto T. Phytochrome A-mediated inhibition of seed germination in tomato. Planta 213: 764-769 (2001).

Shirley AM, Chapple C. Biochemical characterization of sinapoylglucose:choline sinapoyltransferase, a serine carboxypeptidase-like protein that functions as an acyltransferase in plant secondary metabolism. J. Biol. Chem. 278: 19870-19877 (2003).

Shittu HO, Castroverde DC, Nazar RN, Robb J. Plant-endophyte interplay protects tomato against a virulent Verticillium. Planta 229: 415-426 (2009).

Shiu OY, Oetiker JH, Yip WK, Yang SF. The promoter of LE-ACS7, an early flooding-induced 1-aminocyclopropane-1-carboxylate synthase gene of the tomato, is tagged by a Sol3 transposon. Proc. Natl. Acad. Sci. U.S.A. 95: 10334-10339 (1998).

Shono M, Liu J, Sanmiya K, Singh I, ud Din J, Suzuki K, Tsukaguchi T, Egawa Y. Functional analysis of mitochondrial small heat shock protein. JIRCAS Working Report No.23, "Genetic Engineering of Crop Plants for Abiotic Stress" (Iwanaga M, ed.) p. 17-23 (2002).

Sicard A, Petit J, Mouras A, Chevalier C, Hernould M. Meristem activity during flower and ovule development in tomato is controlled by the mini zinc finger gene INHIBITOR OF MERISTEM ACTIVITY. Plant J. 55: 415-427 (2008).

Simkin AJ, Schwartz SH, Auldridge M, Taylor MG, Klee HJ. The tomato carotenoid cleavage dioxygenase 1 genes contribute to the formation of the flavor volatiles beta-ionone, pseudoionone, and geranylacetone. Plant J. 40: 882-892 (2004).

Simkin AJ, Underwood BA, Auldridge M, Loucas HM, Shibuya K, Schmelz E, Clark DG, Klee HJ. Circadian regulation of the PhCCD1 carotenoid cleavage dioxygenase controls emission of beta-ionone, a fragrance volatile of petunia flowers. Plant Physiol. 136: 3504-3514 (2004).

Simons BH, Millenaar FF, Mulder L, Van Loon LC, Lambers H. Enhanced expression and activation of the alternative oxidase during infection of Arabidopsis with Pseudomonas syringae pv tomato. Plant Physiol. 120: 529-538 (1999).

Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osbourn A. Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrob. Agents Chemother. 50: 2732-2740 (2006).

Simpson SD, Ashford DA, Harvey DJ, Bowles DJ. Short chain oligogalacturonides induce ethylene production and expression of the gene encoding aminocyclopropane 1-carboxylic acid oxidase in tomato plants. Glycobiology 8: 579-583 (1998).

Singh J, Roberts MR. Fusicoccin activates pathogen-responsive gene expression independently of common resistance signalling pathways, but increases disease symptoms in Pseudomonas syringae-infected tomato plants. Planta 219: 261-269 (2004).

Singh MB, Bhalla PL. Genetic engineering for removing food allergens from plants. Trends Plant Sci. 13: 257-260 (2008).

Sinha AK, Hofmann MG, Romer U, Kockenberger W, Elling L, Roitsch T. Metabolizable and non-metabolizable sugars activate different signal transduction pathways in tomato. Plant Physiol. 128: 1480-1489 (2002).

Siqueira-Junior CL, Jardim BC, Urmenyi TP, Vicente AC, Hansen E, Otsuki K, da Cunha M, Madureira HC, de Carvalho DR, Jacinto T. Wound response in passion fruit (Passiflora f. edulis flavicarpa) plants: gene characterization of a novel chloroplast-targeted allene oxide synthase up-regulated by mechanical injury and methyl jasmonate. Plant Cell Rep. 27: 387-397 (2008).

Sitrit Y, Bennett AB. Regulation of tomato fruit polygalacturonase mRNA accumulation by ethylene: a re-examination. Plant Physiol. 116: 1145-1150 (1998).

Sitrit Y, Hadfield KA, Bennett AB, Bradford KJ, Downie AB. Expression of a polygalacturonase associated with tomato seed germination. Plant Physiol. 121: 419-428 (1999).

Sivasankar S, Sheldrick B, Rothstein SJ. Expression of allene oxide synthase determines defense gene activation in tomato. Plant Physiol. 122: 1335-1342 (2000).

Slocombe SP, Schauvinhold I, McQuinn RP, Besser K, Welsby NA, Harper A, Aziz N, Li Y, Larson TR, Giovannoni J, Dixon RA, Broun P. Transcriptomic and reverse genetic analyses of branched chain fatty acid and acyl sugar production in Solanum pennellii and Nicotiana benthamiana. Plant Physiol. 148: 1830-1846 (2008).

Smalley SJ, Hauser HD, Berg VS. Effect of cations on effective permeability of leaf cuticles to sulfuric acid. Plant Physiol. 103: 251-256 (1993).

Smarda P, Bures P. Intraspecific DNA content variability in Festuca pallens on different geographical scales and ploidy levels. Ann. Bot. (Lond.) 98: 665-678 (2006).

Smith DL, Abbott JA, Gross KC. Down-regulation of tomato beta-galactosidase 4 results in decreased fruit softening. Plant Physiol. 129: 1755-1762 (2002).

Smith DL, Gross KC. A family of at least seven beta-galactosidase genes is expressed during tomato fruit development. Plant Physiol. 123: 1173-1184 (2000).

Smith DL, Starrett DA, Gross KC. A gene coding for tomato fruit beta-galactosidase II is expressed during fruit ripening. Cloning, characterization, and expression pattern. Plant Physiol. 117: 417-423 (1998).

Snyman M, Cronje MJ. Modulation of heat shock factors accompanies salicylic acid-mediated potentiation of Hsp70 in tomato seedlings. J. Exp. Bot. 59: 2125-2132 (2008).

Sobajima H, Takeda M, Sugimori M, Kobashi N, Kiribuchi K, Cho EM, Akimoto C, Yamaguchi T, Minami E, Shibuya N, Schaller F, Weiler EW, Yoshihara T, Nishida H, Nojiri H, Omori T, Nishiyama M, Yamane H. Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells. Planta 216: 692-698 (2003).

Sobeih WY, Dodd IC, Bacon MA, Grierson D, Davies WJ. Long-distance signals regulating stomatal conductance and leaf growth in tomato (Lycopersicon esculentum) plants subjected to partial root-zone drying. J. Exp. Bot. 55: 2353-2363 (2004).

Sohn KH, Lee SC, Jung HW, Hong JK, Hwang BK. Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. Plant Mol. Biol. 61: 897-915 (2006).

Sokolenko A, Lerbs-Mache S, Altschmied L, Herrmann RG. Clp protease complexes and their diversity in chloroplasts. Planta 207: 286-295 (1998).

Solomon PS, Oliver RP. The nitrogen content of the tomato leaf apoplast increases during infection by Cladosporium fulvum. Planta 213: 241-249 (2001).

Solomon PS, Oliver RP. Evidence that gamma-aminobutyric acid is a major nitrogen source during Cladosporium fulvum infection of tomato. Planta 214: 414-420 (2002).

Sommer A, Ne'eman E, Steffens JC, Mayer AM, Harel E. Import, targeting, and processing of a plant polyphenol oxidase. Plant Physiol. 105: 1301-1311 (1994).

Song J, Tachibana S. Loss of viability of tomato pollen during long-term dry storage is associated with reduced capacity for translating polyamine biosynthetic enzyme genes after rehydration. J. Exp. Bot. 58: 4235-4244 (2007).

Song JT, Seo HS, Song SI, Lee JS, Choi YD. NTR1 encodes a floral nectary-specific gene in Brassica campestris L. ssp. pekinensis. Plant Mol. Biol. 42: 647-655 (2000).

Song XS, Wang YJ, Mao WH, Shi K, Zhou YH, Nogues S, Yu JQ. Effects of cucumber mosaic virus infection on electron transport and antioxidant system in chloroplasts and mitochondria of cucumber and tomato leaves. Physiol. Plant. 135: 246-257 (2009).

Souer E, Rebocho AB, Bliek M, Kusters E, de Bruin RA, Koes R. Patterning of inflorescences and flowers by the F-box protein DOUBLE TOP and the LEAFY homolog ABERRANT LEAF AND FLOWER of Petunia. Plant Cell 20: 2033-2048 (2008).

Souleyre EJF, Iannetta PPM, Ross HA, Hancock RD, Shepherd LVT, Viola R, Taylor MA, Davies HV. Starch metabolism in developing strawberry (Fragaria x ananassa) fruits. Physiol. Plant. 121: 369-376 (2004).

Sozzi GO, Greve LC, Prody GA, Labavitch JM. Gibberellic acid, synthetic auxins, and ethylene differentially modulate alpha-L-arabinofuranosidase activities in antisense 1-aminocyclopropane-1-carboxylic acid synthase tomato pericarp discs. Plant Physiol. 129: 1330-1340 (2002).

Spanu P, Grosskopf DG, Felix G, Boller T. The apparent turnover of 1-aminocyclopropane-1-carboxylate synthase in tomato cells is regulated by protein phosphorylation and dephosphorylation. Plant Physiol. 106: 529-535 (1994).

Spassieva SD, Markham JE, Hille J. The plant disease resistance gene Asc-1 prevents disruption of sphingolipid metabolism during AAL-toxin-induced programmed cell death. Plant J. 32: 561-572 (2002).

Speirs J, Lee E, Holt K, Yong-Duk K, Steele Scott N, Loveys B, Schuch W. Genetic manipulation of alcohol dehydrogenase levels in ripening tomato fruit affects the balance of some flavor aldehydes and alcohols. Plant Physiol. 117: 1047-1058 (1998).

Spoel SH, Koornneef A, Claessens SM, Korzelius JP, Van Pelt JA, Mueller MJ, Buchala AJ, Metraux JP, Brown R, Kazan K, Van Loon LC, Dong X, Pieterse CM. NPR1 modulates cross-talk between salicylate- and jasmonate-dependent defense pathways through a novel function in the cytosol. Plant Cell 15: 760-770 (2003).

Srinivas A, Behera RK, Kagawa T, Wada M, Sharma R. High pigment1 mutation negatively regulates phototropic signal transduction in tomato seedlings. Plant Physiol. 134: 790-800 (2004).

Stadler T, Arunyawat U, Stephan W. Population genetics of speciation in two closely related wild tomatoes (Solanum section Lycopersicon). Genetics 178: 339-350 (2008).

Stagel A, Portis E, Toppino L, Rotino GL, Lanteri S. Gene-based microsatellite development for mapping and phylogeny studies in eggplant. BMC Genomics 9: 357 (2008).

Stark RE, Yan B, Stanley-Fernandez SM, Chen ZJ, Garbow JR. NMR characterization of hydration and thermal stress in tomato fruit cuticles. Phytochemistry 69: 2689-2695 (2008).

Stavolone L, Kononova M, Pauli S, Ragozzino A, de Haan P, Milligan S, Lawton K, Hohn T. Cestrum yellow leaf curling virus (CmYLCV) promoter: a new strong constitutive promoter for heterologous gene expression in a wide variety of crops. Plant Mol. Biol. 53: 663-673 (2003).

Stennis MJ, Chandra S, Ryan CA, Low PS. Systemin potentiates the oxidative burst in cultured tomato cells. Plant Physiol. 117: 1031-1036 (1998).

Stenzel I, Hause B, Maucher H, Pitzschke A, Miersch O, Ziegler J, Ryan CA, Wasternack C. Allene oxide cyclase dependence of the wound response and vascular bundle-specific generation of jasmonates in tomato - amplification in wound signalling. Plant J. 33: 577-589 (2003).

Stenzel I, Hause B, Miersch O, Kurz T, Maucher H, Weichert H, Ziegler J, Feussner I, Wasternack C. Jasmonate biosynthesis and the allene oxide cyclase family of Arabidopsis thaliana. Plant Mol. Biol. 51: 895-911 (2003).

Stenzel I, Hause B, Proels R, Miersch O, Oka M, Roitsch T, Wasternack C. The AOC promoter of tomato is regulated by developmental and environmental stimuli. Phytochemistry 69: 1859-1869 (2008).

Stevens R, Buret M, Duffe P, Garchery C, Baldet P, Rothan C, Causse M. Candidate genes and quantitative trait loci affecting fruit ascorbic acid content in three tomato populations. Plant Physiol. 143: 1943-1953 (2007).

Stevens R, Page D, Gouble B, Garchery C, Zamir D, Causse M. Tomato fruit ascorbic acid content is linked with monodehydroascorbate reductase activity and tolerance to chilling stress. Plant Cell Environ. 31: 1086-1096 (2008).

Stieger PA, Meyer AD, Kathmann P, Frundt C, Niederhauser I, Barone M, Kuhlemeier C. The orf13 T-DNA gene of Agrobacterium rhizogenes confers meristematic competence to differentiated cells. Plant Physiol. 135: 1798-1808 (2004).

Stieger PA, Reinhardt D, Kuhlemeier C. The auxin influx carrier is essential for correct leaf positioning. Plant J. 32: 509-517 (2002).

Storozhenko S, De Pauw P, Van Montagu M, Inze D, Kushnir S. The heat-shock element is a functional component of the Arabidopsis APX1 gene promoter. Plant Physiol. 118: 1005-1014 (1998).

Strassner J, Schaller F, Frick UB, Howe GA, Weiler EW, Amrhein N, Macheroux P, Schaller A. Characterization and cDNA-microarray expression analysis of 12-oxophytodienoate reductases reveals differential roles for octadecanoid biosynthesis in the local versus the systemic wound response. Plant J. 32: 585-601 (2002).

Streb P, Josse EM, Gallouet E, Baptist F, Kuntz M, Cornic G. Evidence for alternative electron sinks to photosynthetic carbon assimilation in the high mountain plant species Ranunculus glacialis. Plant Cell Environ. 28: 1123-1135 (2005).

Streeter JG, Strimbu CE. Simultaneous extraction and derivatization of carbohydrates from green plant tissues for analysis by gas-liquid chromatography. Anal. Biochem. 259: 253-257 (1998).

Studart-Guimaraes C, Fait A, Nunes-Nesi A, Carrari F, Usadel B, Fernie AR. Reduced expression of succinyl-coenzyme A ligase can be compensated for by up-regulation of the gamma-aminobutyrate shunt in illuminated tomato leaves. Plant Physiol. 145: 626-639 (2007).

Studart-Guimaraes C, Gibon Y, Frankel N, Wood CC, Zanor MI, Fernie AR, Carrari F. Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Mol. Biol. 59: 781-791 (2005).

Stuger R, Ranostaj S, Materna T, Forreiter C. Messenger RNA-binding properties of nonpolysomal ribonucleoproteins from heat-stressed tomato cells. Plant Physiol. 120: 23-32 (1999).

Stulemeijer IJ, Stratmann JW, Joosten MH. Tomato mitogen-activated protein kinases LeMPK1, LeMPK2, and LeMPK3 are activated during the Cf-4/Avr4-induced hypersensitive response and have distinct phosphorylation specificities. Plant Physiol. 144: 1481-1494 (2007).

Sudhakar N, Nagendra-Prasad D, Mohan N, Murugesan K. Induction of systemic resistance in Lycopersicon esculentum cv. PKM1 (tomato) against cucumber mosaic virus by using ozone. J. Virol. Methods 139: 71-77 (2007).

Sui N, Li M, Zhao SJ, Li F, Liang H, Meng QW. Overexpression of glycerol-3-phosphate acyltransferase gene improves chilling tolerance in tomato. Planta 226: 1097-1108 (2007).

Sun HJ, Kataoka H, Yano M, Ezura H. Genetically stable expression of functional miraculin, a new type of alternative sweetener, in transgenic tomato plants. Plant Biotechnol. J. 5: 768-777 (2007).

Sun W, Dunning FM, Pfund C, Weingarten R, Bent AF. Within-species flagellin polymorphism in Xanthomonas campestris pv campestris and its impact on elicitation of Arabidopsis FLAGELLIN SENSING2-dependent defenses. Plant Cell 18: 764-779 (2006).

Sun W, Kieliszewski MJ, Showalter AM. Overexpression of tomato LeAGP-1 arabinogalactan-protein promotes lateral branching and hampers reproductive development. Plant J. 40: 870-881 (2004).

Sun W, Zhao ZD, Hare MC, Kieliszewski MJ, Showalter AM. Tomato LeAGP-1 is a plasma membrane-bound, glycosylphosphatidylinositol-anchored arabinogalactan-protein. Physiol. Plant. 120: 319-327 (2004).

Symons GM, Davies C, Shavrukov Y, Dry IB, Reid JB, Thomas MR. Grapes on steroids. Brassinosteroids are involved in grape berry ripening. Plant Physiol. 140: 150-158 (2006).

Szamosi I, Shaner DL, Singh BK. Identification and characterization of a biodegradative form of threonine dehydratase in senescing tomato (Lycopersicon esculentum) leaf. Plant Physiol. 101: 999-1004 (1993).

Szekeres M. Brassinosteroid and systemin: two hormones perceived by the same receptor. Trends Plant Sci. 8: 102-104 (2003).

Szinay D, Chang SB, Khrustaleva L, Peters S, Schijlen E, Bai Y, Stiekema WJ, van Ham RC, de Jong H, Klein Lankhorst RM. High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome 6. Plant J. 56: 627-637 (2008).

Szymanski J, Bielecka M, Carrari F, Fernie AR, Hoefgen R, Nikiforova VJ. On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68: 2163-2175 (2007).

Szymkowiak EJ, Irish EE. Interactions between jointless and wild-type tomato tissues during development of the pedicel abscission zone and the inflorescence meristem. Plant Cell 11: 159-175 (1999).

Szymkowiak EJ, Irish EE. JOINTLESS suppresses sympodial identity in inflorescence meristems of tomato. Planta 223: 646-658 (2006).

Tadiello A, Pavanello A, Zanin D, Caporali E, Colombo L, Rotino GL, Trainotti L, Casadoro G. A PLENA-like gene of peach is involved in carpel formation and subsequent transformation into a fleshy fruit. J. Exp. Bot. 60: 651-661 (2009).

Takahashi A, Casais C, Ichimura K, Shirasu K. HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 100: 11777-11782 (2003).

Tameling WI, Elzinga SD, Darmin PS, Vossen JH, Takken FL, Haring MA, Cornelissen BJ. The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity. Plant Cell 14: 2929-2939 (2002).

Tameling WI, Vossen JH, Albrecht M, Lengauer T, Berden JA, Haring MA, Cornelissen BJ, Takken FL. Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation. Plant Physiol. 140: 1233-1245 (2006).

Tan J, Bednarek P, Liu J, Schneider B, Svatos A, Hahlbrock K. Universally occurring phenylpropanoid and species-specific indolic metabolites in infected and uninfected Arabidopsis thaliana roots and leaves. Phytochemistry 65: 691-699 (2004).

Tang D, Ade J, Frye CA, Innes RW. Regulation of plant defense responses in Arabidopsis by EDR2, a PH and START domain-containing protein. Plant J. 44: 245-257 (2005).

Tang D, Ade J, Frye CA, Innes RW. A mutation in the GTP hydrolysis site of Arabidopsis dynamin-related protein 1E confers enhanced cell death in response to powdery mildew infection. Plant J. 47: 75-84 (2006).

Tang D, Simonich MT, Innes RW. Mutations in LACS2, a long-chain acyl-coenzyme A synthetase, enhance susceptibility to avirulent Pseudomonas syringae but confer resistance to botrytis cinerea in arabidopsis. Plant Physiol. 144: 1093-1103 (2007).

Tang G, Zhu X, Gakiere B, Levanony H, Kahana A, Galili G. The bifunctional LKR/SDH locus of plants also encodes a highly active monofunctional lysine-ketoglutarate reductase using a polyadenylation signal located within an intron. Plant Physiol. 130: 147-154 (2002).

Tang W, Ezcurra I, Muschietti J, McCormick S. A cysteine-rich extracellular protein, LAT52, interacts with the extracellular domain of the pollen receptor kinase LePRK2. Plant Cell 14: 2277-2287 (2002).

Tang W, Kelley D, Ezcurra I, Cotter R, McCormick S. LeSTIG1, an extracellular binding partner for the pollen receptor kinases LePRK1 and LePRK2, promotes pollen tube growth in vitro. Plant J. 39: 343-353 (2004).

Tang X, Xie M, Kim YJ, Zhou J, Klessig DF, Martin GB. Overexpression of Pto activates defense responses and confers broad resistance. Plant Cell 11: 15-30 (1999).

Tanksley SD. The genetic, developmental, and molecular bases of fruit size and shape variation in tomato. Plant Cell 16: S181-S189 (2004).

Tao X, Zhou X. A modified viral satellite DNA that suppresses gene expression in plants. Plant J. 38: 850-860 (2004).

Tapia G, Verdugo I, Yanez M, Ahumada I, Theoduloz C, Cordero C, Poblete F, Gonzalez E, Ruiz-Lara S. Involvement of ethylene in stress-induced expression of the TLC1.1 retrotransposon from Lycopersicon chilense Dun. Plant Physiol. 138: 2075-2086 (2005).

Tarun AS, Lee JS, Theologis A. Random mutagenesis of 1-aminocyclopropane-1-carboxylate synthase: a key enzyme in ethylene biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 95: 9796-9801 (1998).

Tarun AS, Theologis A. Complementation analysis of mutants of 1-aminocyclopropane- 1-carboxylate synthase reveals the enzyme is a dimer with shared active sites. J. Biol. Chem. 273: 12509-12514 (1998).

Tassoni A, Watkins CB, Davies PJ. Inhibition of the ethylene response by 1-MCP in tomato suggests that polyamines are not involved in delaying ripening, but may moderate the rate of ripening or over-ripening. J. Exp. Bot. 57: 3313-3325 (2006).

Tattersall AD, Turner L, Knox MR, Ambrose MJ, Ellis TH, Hofer JM. The mutant crispa reveals multiple roles for PHANTASTICA in pea compound leaf development. Plant Cell 17: 1046-1060 (2005).

Taylor J, Harrier LA. Expression studies of plant genes differentially expressed in leaf and root tissues of tomato colonised by the arbuscular mycorrhizal fungus Glomus mosseae. Plant Mol. Biol. 51: 619-629 (2003).

Taylor MA, Arif SA, Kumar A, Davies HV, Scobie LA, Pearce SR, Flavell AJ. Expression and sequence analysis of cDNAs induced during the early stages of tuberisation in different organs of the potato plant (Solanum tuberosum L.). Plant Mol. Biol. 20: 641-651 (1992).

Taylor R, Inamine G, Anderson JD. Tissue printing as a tool for observing immunological and protein profiles in young and mature celery petioles. Plant Physiol. 102: 1027-1031 (1993).

Telef N, Stammitti-Bert L, Mortain-Bertrand A, Maucourt M, Carde JP, Rolin D, Gallusci P. Sucrose deficiency delays lycopene accumulation in tomato fruit pericarp discs. Plant Mol. Biol. 62: 453-469 (2006).

Terce-Laforgue T, Mack G, Hirel B. New insights towards the function of glutamate dehydrogenase revealed during source-sink transition of tobacco (Nicotiana tabacum) plants grown under different nitrogen regimes. Physiol. Plant. 120: 220-228 (2004).

Terry MJ, Kendrick RE. Feedback inhibition of chlorophyll synthesis in the phytochrome chromophore-deficient aurea and yellow-green-2 mutants of tomato. Plant Physiol. 119: 143-152 (1999).

Terry MJ, Ryberg M, Raitt CE, Page AM. Altered etioplast development in phytochrome chromophore-deficient mutants. Planta 214: 314-325 (2001).

Tertivanidis K, Goudoula C, Vasilikiotis C, Hassiotou E, Perl-Treves R, Tsaftaris A. Superoxide dismutase transgenes in sugarbeets confer resistance to oxidative agents and the fungus C. beticola. Transgenic Res. 13: 225-233 (2004).

Testerink C, Dekker HL, Lim ZY, Johns MK, Holmes AB, Koster CG, Ktistakis NT, Munnik T. Isolation and identification of phosphatidic acid targets from plants. Plant J. 39: 527-536 (2004).

Thaler JS, Owen B, Higgins VJ. The role of the jasmonate response in plant susceptibility to diverse pathogens with a range of lifestyles. Plant Physiol. 135: 530-538 (2004).

Thilmony R, Underwood W, He SY. Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. Plant J. 46: 34-53 (2006).

Thilmony RL, Chen Z, Bressan RA, Martin GB. Expression of the tomato Pto gene in tobacco enhances resistance to Pseudomonas syringae pv tabaci expressing avrPto. Plant Cell 7: 1529-1536 (1995).

Thipyapong P, Hunt MD, Steffens JC. Antisense downregulation of polyphenol oxidase results in enhanced disease susceptibility. Planta 220: 105-117 (2004).

Thom E, Mohlmann T, Quick WP, Camara B, Neuhaus H-E. Sweet pepper plastids: enzymic equipment, characterisation of the plastidic oxidative pentose-phosphate pathway, and transport of phosphorylated intermediates across the envelope membrane. Planta 204: 226-233 (1998).

Thoma I, Loeffler C, Sinha AK, Gupta M, Krischke M, Steffan B, Roitsch T, Mueller MJ. Cyclopentenone isoprostanes induced by reactive oxygen species trigger defense gene activation and phytoalexin accumulation in plants. Plant J. 34: 363-375 (2003).

Thomas CM, Jones DA, Parniske M, Harrison K, Balint-Kurti PJ, Hatzixanthis K, Jones JD. Characterization of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies sequences that determine recognitional specificity in Cf-4 and Cf-9. Plant Cell 9: 2209-2224 (1997).

Thompson AJ, Andrews J, Mulholland BJ, McKee JM, Hilton HW, Horridge JS, Farquhar GD, Smeeton RC, Smillie IR, Black CR, Taylor IB. Overproduction of abscisic acid in tomato increases transpiration efficiency and root hydraulic conductivity and influences leaf expansion. Plant Physiol. 143: 1905-1917 (2007).

Thompson AJ, Jackson AC, Parker RA, Morpeth DR, Burbidge A, Taylor IB. Abscisic acid biosynthesis in tomato: regulation of zeaxanthin epoxidase and 9-cis-epoxycarotenoid dioxygenase mRNAs by light/dark cycles, water stress and abscisic acid. Plant Mol. Biol. 42: 833-845 (2000).

Thompson AJ, Jackson AC, Symonds RC, Mulholland BJ, Dadswell AR, Blake PS, Burbidge A, Taylor IB. Ectopic expression of a tomato 9-cis-epoxycarotenoid dioxygenase gene causes over-production of abscisic acid. Plant J. 23: 363-374 (2000).

Thompson AJ, Mulholland BJ, Jackson AC, McKee JM, Hilton HW, Symonds RC, Sonneveld T, Burbidge A, Stevenson P, Taylor IB. Regulation and manipulation of ABA biosynthesis in roots. Plant Cell Environ. 30: 67-78 (2007).

Thompson AJ, Thorne ET, Burbidge A, Jackson AC, Sharp RE, Taylor IB. Complementation of notabilis, an abscisic acid-deficient mutant of tomato: Importance of sequence context and utility of partial complementation. Plant Cell Environ. 27: 459-471 (2004).

Thompson AJ, Tor M, Barry CS, Vrebalov J, Orfila C, Jarvis MC, Giovannoni JJ, Grierson D, Seymour GB. Molecular and genetic characterization of a novel pleiotropic tomato-ripening mutant. Plant Physiol. 120: 383-390 (1999).

Thouet J, Quinet M, Ormenese S, Kinet JM, Perilleux C. Revisiting the involvement of SELF-PRUNING in the sympodial growth of tomato. Plant Physiol. 148: 61-64 (2008).

Tian AG, Luo GZ, Wang YJ, Zhang JS, Gai JY, Chen SY. Isolation and characterization of a Pti1 homologue from soybean. J. Exp. Bot. 55: 535-537 (2004).

Tian M, Benedetti B, Kamoun S. A second Kazal-like protease inhibitor from Phytophthora infestans inhibits and interacts with the apoplastic pathogenesis-related protease P69B of tomato. Plant Physiol. 138: 1785-1793 (2005).

Tian M, Chaudhry F, Ruzicka DR, Meagher RB, Staiger CJ, Day B. Arabidopsis actin-depolymerizing factor AtADF4 mediates defense signal transduction triggered by the Pseudomonas syringae effector AvrPphB. Plant Physiol. 150: 815-824 (2009).

Tian M, Win J, Song J, van der Hoorn R, van der Knaap E, Kamoun S. A Phytophthora infestans cystatin-like protein targets a novel tomato papain-like apoplastic protease. Plant Physiol. 143: 364-377 (2007).

Tieman D, Taylor M, Schauer N, Fernie AR, Hanson AD, Klee HJ. Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proc. Natl. Acad. Sci. U.S.A. 103: 8287-8292 (2006).

Tieman DM, Klee HJ. Differential expression of two novel members of the tomato ethylene-receptor family. Plant Physiol. 120: 165-172 (1999).

Tieman DM, Zeigler M, Schmelz EA, Taylor MG, Bliss P, Kirst M, Klee HJ. Identification of loci affecting flavour volatile emissions in tomato fruits. J. Exp. Bot. 57: 887-896 (2006).

Tikunov Y, Lommen A, de Vos CH, Verhoeven HA, Bino RJ, Hall RD, Bovy AG. A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiol. 139: 1125-1137 (2005).

Tirajoh A, Aung TS, McKay AB, Plant AL. Stress-responsive alpha-dioxygenase expression in tomato roots. J. Exp. Bot. 56: 713-723 (2005).

Titarenko E, Rojo E, Leon J, Sanchez-Serrano JJ. Jasmonic acid-dependent and -independent signaling pathways control wound-induced gene activation in Arabidopsis thaliana. Plant Physiol. 115: 817-826 (1997).

Todorovic B, Glick BR. The interconversion of ACC deaminase and D:-cysteine desulfhydrase by directed mutagenesis. Planta 229: 193-205 (2008).

Tomassen MM, Barrett DM, van der Valk HC, Woltering EJ. Isolation and characterization of a tomato non-specific lipid transfer protein involved in polygalacturonase-mediated pectin degradation. J. Exp. Bot. 58: 1151-1160 (2007).

Ton J, De Vos M, Robben C, Buchala A, Metraux JP, Van Loon LC, Pieterse CM. Characterization of Arabidopsis enhanced disease susceptibility mutants that are affected in systemically induced resistance. Plant J. 29: 11-21 (2002).

Ton J, Jakab G, Toquin V, Flors V, Iavicoli A, Maeder MN, Metraux JP, Mauch-Mani B. Dissecting the {beta}-aminobutyric acid-induced priming phenomenon in Arabidopsis. Plant Cell 17: 987-999 (2005).

Tor M, Brown D, Cooper A, Woods-Tor A, Sjolander K, Jones JD, Holub EB. Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLAVATA2 and tomato Cf-9. Plant Physiol. 135: 1100-1112 (2004).

Torres CA, Andrews PK, Davies NM. Physiological and biochemical responses of fruit exocarp of tomato (Lycopersicon esculentum Mill.) mutants to natural photo-oxidative conditions. J. Exp. Bot. 57: 1933-1947 (2006).

Torres Md M, Sanchez P, Fernandez-Delmond I, Grant M. Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance. Plant J. 33: 665-676 (2003).

Tortiglione C, Fogliano V, Ferracane R, Fanti P, Pennacchio F, Monti LM, Rao R. An insect peptide engineered into the tomato prosystemin gene is released in transgenic tobacco plants and exerts biological activity. Plant Mol. Biol. 53: 891-902 (2003).

Tournaire C, Kushnir S, Bauw G, Inze D, Teyssendier de la Serve B, Renaudin JP. A thiol protease and an anionic peroxidase are induced by lowering cytokinins during callus growth in Petunia. Plant Physiol. 111: 159-168 (1996).

Trainotti L, Tadiello A, Casadoro G. The involvement of auxin in the ripening of climacteric fruits comes of age: the hormone plays a role of its own and has an intense interplay with ethylene in ripening peaches. J. Exp. Bot. 58: 3299-3308 (2007).

Trevino MB, OConnell MA. Three drought-responsive members of the nonspecific lipid-transfer protein gene family in Lycopersicon pennellii show different developmental patterns of expression. Plant Physiol. 116: 1461-148 (1998).

Tripp J, Mishra SK, Scharf KD. Functional dissection of the cytosolic chaperone network in tomato mesophyll protoplasts. Plant Cell Environ. 32: 123-133 (2009).

Truong HN, Caboche M, Daniel-Vedele F. The tomato nia gene promoter functions in fission yeast but not in budding yeast. Plant Mol. Biol. 20: 361-364 (1992).

Tsuda K, Sato M, Glazebrook J, Cohen JD, Katagiri F. Interplay between MAMP-triggered and SA-mediated defense responses. Plant J. 53: 763-775 (2008).

Tu CJ, Park SY, Walling LL. Isolation and characterization of the neutral leucine aminopeptidase (LapN) of tomato. Plant Physiol. 132: 243-255 (2003).

Tucker DE, Allen DJ, Ort DR. Control of nitrate reductase by circadian and diurnal rhythms in tomato. Planta 219: 277-285 (2004).

Tucker DE, Ort DR. Low temperature induces expression of nitrate reductase in tomato that temporarily overrides circadian regulation of activity. Photosynth. Res. 72: 285-293 (2002).

Tyihak E, Sarhan ART, Cong NT, Barna B, Kiraly Z. The level of trigonelline and other quaternary ammonium compounds in tomato leaves in ratio to the changing nitrogen supply. Plant & Soil 109: 285-287 (1988).

Ueda A, Shi WM, Sanmiya K, Shono M, Takabe T. Functional analysis of salt-inducible proline transporter of barley roots. Plant Cell Physiol. 42: 1282-1289 (2001).

Uehara T, Sugiyama S, Masuta C. Comparative serial analysis of gene expression of transcript profiles of tomato roots infected with cyst nematode. Plant Mol. Biol. 63: 185-194 (2007).

Uhrig JF, Canto T, Marshall D, MacFarlane SA. Relocalization of nuclear ALY proteins to the cytoplasm by the tomato bushy stunt virus P19 pathogenicity protein. Plant Physiol. 135: 2411-2423 (2004).

Underwood W, Zhang S, He SY. The Pseudomonas syringae type III effector tyrosine phosphatase HopAO1 suppresses innate immunity in Arabidopsis thaliana. Plant J. 52: 658-672 (2007).

Uppalapati SR, Ayoubi P, Weng H, Palmer DA, Mitchell RE, Jones W, Bender CL. The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomato. Plant J. 42: 201-217 (2005).

Urban M, Daniels S, Mott E, Hammond-Kosack K. Arabidopsis is susceptible to the cereal ear blight fungal pathogens Fusarium graminearum and Fusarium culmorum. Plant J. 32: 961-973 (2002).

Urbanczyk-Wochniak E, Fernie AR. Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants. J. Exp. Bot. 56: 309-321 (2005).

Urbanczyk-Wochniak E, Usadel B, Thimm O, Nunes-Nesi A, Carrari F, Davy M, Blasing O, Kowalczyk M, Weicht D, Polinceusz A, Meyer S, Stitt M, Fernie AR. Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Mol. Biol. 60: 773-792 (2006).

Valentine T, Shaw J, Blok VC, Phillips MS, Oparka KJ, Lacomme C. Efficient virus-induced gene silencing in roots using a modified tobacco rattle virus vector. Plant Physiol. 136: 3999-4009 (2004).

Vallano DM, Sparks JP. Quantifying foliar uptake of gaseous nitrogen dioxide using enriched foliar delta15N values. New Phytol. 177: 946-955 (2008).

Valle EM, Boggio SB, Heldt HW. Free amino acid composition of phloem sap and growing fruit of Lycopersicon esculentum. Plant Cell Physiol. 39: 458-461 (1998).

van Bentem Sde L, Vossen JH, de Vries KJ, van Wees S, Tameling WI, Dekker HL, de Koster CG, Haring MA, Takken FL, Cornelissen BJ. Heat shock protein 90 and its co-chaperone protein phosphatase 5 interact with distinct regions of the tomato I-2 disease resistance protein. Plant J. 43: 284-298 (2005).

Van den Heuvel KJ, Van Lipzig RH, Barendse GW, Wullems GJ. Regulation of expression of two novel flower-specific genes from tomato (Solanum lycopersicum) by gibberellin. J. Exp. Bot. 53: 51-59 (2002).

Van Der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S. Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14: 1441-1456 (2002).

van Der Hoeven RS, Monforte AJ, Breeden D, Tanksley SD, Steffens JC. Genetic control and evolution of sesquiterpene biosynthesis in Lycopersicon esculentum and L. hirsutum. Plant Cell 12: 2283-2294 (2000).

Van Der Hoorn RA, Rivas S, Wulff BB, Jones JD, Joosten MH. Rapid migration in gel filtration of the Cf-4 and Cf-9 resistance proteins is an intrinsic property of Cf proteins and not because of their association with high-molecular-weight proteins. Plant J. 35: 305-315 (2003).

van der Hoorn RA, Wulff BB, Rivas S, Durrant MC, van der Ploeg A, de Wit PJ, Jones JD. Structure-function analysis of cf-9, a receptor-like protein with extracytoplasmic leucine-rich repeats. Plant Cell 17: 1000-1015 (2005).

van Der Luit AH, Piatti T, van Doorn A, Musgrave A, Felix G, Boller T, Munnik T. Elicitation of suspension-cultured tomato cells triggers the formation of phosphatidic acid and diacylglycerol pyrophosphate. Plant Physiol. 123: 1507-1516 (2000).

Van Der Merwe MJ, Osorio S, Moritz T, Nunes-Nesi A, Fernie AR. Decreased mitochondrial activities of malate dehydrogenase and fumarase in Solanum lycopersicum lead to altered root growth and architecture via diverse mechanisms. Plant Physiol. 149: 653-669 (2009).

van der Rest B, Danoun S, Boudet AM, Rochange SF. Down-regulation of cinnamoyl-CoA reductase in tomato (Solanum lycopersicum L.) induces dramatic changes in soluble phenolic pools. J. Exp. Bot. 57: 1399-1411 (2006).

Van der Straeten D, Rodrigues-Pousada RA, Villarroel R, Hanley S, Goodman HM, Van Montagu M. Cloning, genetic mapping, and expression analysis of an Arabidopsis thaliana gene that encodes 1-aminocyclopropane-1-carboxylate synthase. Proc. Natl. Acad. Sci. U.S.A. 89: 9969-9973 (1992).

van der Vossen E, Sikkema A, Hekkert BL, Gros J, Stevens P, Muskens M, Wouters D, Pereira A, Stiekema W, Allefs S. An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato. Plant J. 36: 867-882 (2003).

van der Vossen EA, Gros J, Sikkema A, Muskens M, Wouters D, Wolters P, Pereira A, Allefs S. The Rpi-blb2 gene from Solanum bulbocastanum is an Mi-1 gene homolog conferring broad-spectrum late blight resistance in potato. Plant J. 44: 208-222 (2005).

Van Der Weele CM, Jiang HS, Palaniappan KK, Ivanov VB, Palaniappan K, Baskin TI. A new algorithm for computational image analysis of deformable motion at high spatial and temporal resolution applied to root growth. Roughly uniform elongation in the meristem and also, after an abrupt acceleration, in the elongation zone. Plant Physiol. 132: 1138-1148 (2003).

van Esse HP, Van't Klooster JW, Bolton MD, Yadeta KA, van Baarlen P, Boeren S, Vervoort J, de Wit PJ, Thomma BP. The Cladosporium fulvum virulence protein Avr2 inhibits host proteases required for basal defense. Plant Cell 20: 1948-1963 (2008).

van Gestel NC, Nesbit AD, Gordon EP, Green C, Pare PW, Thompson L, Peffley EB, Tissue DT. Continuous light may induce photosynthetic downregulation in onion: consequences for growth and biomass partitioning. Physiol. Plant. 125: 235-246 (2005).

Van Heerden PDR, Kruger GHJ, Loveland JE, Parry MAJ, Foyer CH. Dark chilling imposes metabolic restrictions on photosynthesis in soybean. Plant Cell Environ. 26: 323-337 (2003).

Van Ieperen W, Volkov VS, Van Meeteren U. Distribution of xylem hydraulic resistance in fruiting truss of tomato influenced by water stress. J. Exp. Bot. 54: 317-324 (2003).

van Schie CC, Ament K, Schmidt A, Lange T, Haring MA, Schuurink RC. Geranyl diphosphate synthase is required for biosynthesis of gibberellins. Plant J. 52: 752-762 (2007).

van Schie CC, Haring MA, Schuurink RC. Tomato linalool synthase is induced in trichomes by jasmonic acid. Plant Mol. Biol. 64: 251-263 (2007).

van Wees SC, Luijendijk M, Smoorenburg I, van Loon LC, Pieterse CM. Rhizobacteria-mediated induced systemic resistance (ISR) in Arabidopsis is not associated with a direct effect on expression of known defense-related genes but stimulates the expression of the jasmonate-inducible gene Atvsp upon challenge. Plant Mol. Biol. 41: 537-549 (1999).

Varet A, Hause B, Hause G, Scheel D, Lee J. The Arabidopsis NHL3 gene encodes a plasma membrane protein and its overexpression correlates with increased resistance to Pseudomonas syringae pv. tomato DC3000. Plant Physiol. 132: 2023-2033 (2003).

Veit S, Worle JM, Nurnberger T, Koch W, Seitz HU. A novel protein elicitor (PaNie) from Pythium aphanidermatum induces multiple defense responses in carrot, Arabidopsis, and tobacco. Plant Physiol. 127: 832-841 (2001).

Veljanovski V, Vanderbeld B, Knowles VL, Snedden WA, Plaxton WC. Biochemical and molecular characterization of AtPAP26, a vacuolar purple acid phosphatase upregulated in phosphate-deprived Arabidopsis suspension cells and seedlings. Plant Physiol. 142: 1282-1293 (2006).

Verhoeyen ME, Bovy A, Collins G, Muir S, Robinson S, de Vos CH, Colliver S. Increasing antioxidant levels in tomatoes through modification of the flavonoid biosynthetic pathway. J. Exp. Bot. 53: 2099-2106 (2002).

Veronese P, Chen X, Bluhm B, Salmeron J, Dietrich R, Mengiste T. The BOS loci of Arabidopsis are required for resistance to Botrytis cinerea infection. Plant J. 40: 558-574 (2004).

Veronese P, Nakagami H, Bluhm B, Abuqamar S, Chen X, Salmeron J, Dietrich RA, Hirt H, Mengiste T. The membrane-anchored BOTRYTIS-INDUCED KINASE1 plays distinct roles in Arabidopsis resistance to necrotrophic and biotrophic pathogens. Plant Cell 18: 257-273 (2006).

Verslues PE, Bray EA. LWR1 and LWR2 are required for osmoregulation and osmotic adjustment in Arabidopsis. Plant Physiol. 136: 2831-2842 (2004).

Vian A, Henry-Vian C, Davies E. Rapid and systemic accumulation of chloroplast mRNA-binding protein transcripts after flame stimulus in tomato. Plant Physiol. 121: 517-524 (1999).

Viktor A, Cramer MD. The influence of root assimilated inorganic carbon on nitrogen acquisition/assimilation and carbon partitioning. New Phytol. 165: 157-169 (2005).

Vleghels I, Hontelez J, Ribeiro A, Fransz P, Bisseling T, Franssen H. Expression of ENOD40 during tomato plant development. Planta 218: 42-49 (2003).

Vogel JT, Tan BC, McCarty DR, Klee HJ. The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificity, cleaving multiple carotenoids at two different bond positions. J. Biol. Chem. 283: 11364-11373 (2008).

Vogg G, Fischer S, Leide J, Emmanuel E, Jetter R, Levy AA, Riederer M. Tomato fruit cuticular waxes and their effects on transpiration barrier properties: functional characterization of a mutant deficient in a very-long-chain fatty acid beta-ketoacyl-CoA synthase. J. Exp. Bot. 55: 1401-1410 (2004).

Vogler H, Caderas D, Mandel T, Kuhlemeier C. Domains of expansin gene expression define growth regions in the shoot apex of tomato. Plant Mol. Biol. 53: 267-272 (2003).

Vogt T, Grimm R, Strack D. Cloning and expression of a cDNA encoding betanidin 5-O-glucosyltransferase, a betanidin- and flavonoid-specific enzyme with high homology to inducible glucosyltransferases from the Solanaceae. Plant J. 19: 509-519 (1999).

Voinnet O, Rivas S, Mestre P, Baulcombe D. An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant J. 33: 949-956 (2003).

von Wiren N, Gazzarrini S, Gojon A, Frommer WB. The molecular physiology of ammonium uptake and retrieval. Curr. Opin. Plant Biol. 3: 254-261 (2000).

von Wiren N, Lauter FR, Ninnemann O, Gillissen B, Walch-Liu P, Engels C, Jost W, Frommer WB. Differential regulation of three functional ammonium transporter genes by nitrogen in root hairs and by light in leaves of tomato. Plant J. 21: 167-175 (2000).

Vries JS, Andriotis VM, Wu AJ, Rathjen JP. Tomato Pto encodes a functional N-myristoylation motif that is required for signal transduction in Nicotiana benthamiana. Plant J. 45: 31-45 (2006).

Waditee R, Hibino T, Tanaka Y, Nakamura T, Incharoensakdi A, Hayakawa S, Suzuki S, Futsuhara Y, Kawamitsu Y, Takabe T, Takabe T. Functional characterization of betaine/proline transporters in betaine-accumulating mangrove. J. Biol. Chem. 277: 18373-18382 (2002).

Walter MH, Hans J, Strack D. Two distantly related genes encoding 1-deoxy-d-xylulose 5-phosphate synthases: differential regulation in shoots and apocarotenoid-accumulating mycorrhizal roots. Plant J. 31: 243-254 (2002).

Wang C, Cai X, Zheng Z. High humidity represses Cf-4/Avr4- and Cf-9/Avr9-dependent hypersensitive cell death and defense gene expression. Planta 222: 947-956 (2005).

Wang CX, Wang L, Thomas CR. Modelling the mechanical properties of single suspension-cultured tomato cells. Ann. Bot. (Lond.) 93: 443-453 (2004).

Wang F, Sanz A, Brenner ML, Smith A. Sucrose synthase, starch accumulation, and tomato fruit sink strength. Plant Physiol. 101: 321-327 (1993).

Wang H, Huang Z, Chen Q, Zhang Z, Zhang H, Wu Y, Huang D, Huang R. Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance. Plant Mol. Biol. 55: 183-192 (2004).

Wang H, Jones B, Li Z, Frasse P, Delalande C, Regad F, Chaabouni S, Latche A, Pech JC, Bouzayen M. The tomato Aux/IAA transcription factor IAA9 is involved in fruit development and leaf morphogenesis. Plant Cell 17: 2676-2692 (2005).

Wang LQ, Wang Y, Dong Y, Wang WB. Induced activity of nitrate reductase by nitrate and cloning of nitrate reductase gene. Sheng Wu Gong Cheng Xue Bao 19: 632-635 (2003).

Wang P, Wang YQ, Geng DG, Li WB, Sun YR. Molecular cloning and characterization of a cDNA encoding nitrate reductase from Chlorella ellipsoidea (Chlorophyta). J. Appl. Phycol. 15: 457-463 (2003).

Wang S, Liu J, Feng Y, Niu X, Giovannoni J, Liu Y. Altered plastid levels and potential for improved fruit nutrient content by downregulation of the tomato DDB1-interacting protein CUL4. Plant J. 55: 89-103 (2008).

Wang Y, Li J. Molecular basis of plant architecture. Annu. Rev. Plant Biol. 59: 253-279 (2008).

Wang YH, Garvin DF, Kochian LV. Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition. Plant Physiol. 127: 345-359 (2001).

Wang YH, Garvin DF, Kochian LV. Rapid induction of regulatory and transporter genes in response to phosphorus, potassium, and iron deficiencies in tomato roots. evidence for cross talk and root/rhizosphere-mediated signals. Plant Physiol. 130: 1361-1370 (2002).

Wang YH, Kochian LV, Doyle JJ, Garvin DF. Two tomato non-symbiotic haemoglobin genes are differentially expressed in response to diverse changes in mineral nutrient status. Plant Cell Environ. 26: 673-680 (2003).

Wang YX, Jones JD, Weller SC, Goldsbrough PB. Expression and stability of amplified genes encoding 5-enolpyruvylshikimate-3-phosphate synthase in glyphosate-tolerant tobacco cells. Plant Mol. Biol. 17: 1127-1138 (1991).

Wang ZY, He JX. Brassinosteroid signal transduction--choices of signals and receptors. Trends Plant Sci. 9: 91-96 (2004).

Wang ZY, MacRae EA, Wright MA, Bolitho KM, Ross GS, Atkinson RG. Polygalacturonase gene expression in kiwifruit: relationship to fruit softening and ethylene production. Plant Mol. Biol. 42: 317-328 (2000).

Warren CR. Soil water deficits decrease the internal conductance to CO2 transfer but atmospheric water deficits do not. J. Exp. Bot. 59: 327-334 (2008).

Wasaki J, Yonetani R, Kuroda S, Shinano T, Yazaki J, Fujii F, Shimbo K, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S, Yamagishi M, Osaki M. Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots. Plant Cell Environ. 26: 1515-1523 (2003).

Waters MT, Fray RG, Pyke KA. Stromule formation is dependent upon plastid size, plastid differentiation status and the density of plastids within the cell. Plant J. 39: 655-667 (2004).

Wei CF, Kvitko BH, Shimizu R, Crabill E, Alfano JR, Lin NC, Martin GB, Huang HC, Collmer A. A Pseudomonas syringae pv. tomato DC3000 mutant lacking the type III effector HopQ1-1 is able to cause disease in the model plant Nicotiana benthamiana. Plant J. 51: 32-46 (2007).

Weise A, Barker L, Kuhn C, Lalonde S, Buschmann H, Frommer WB, Ward JM. A new subfamily of sucrose transporters, SUT4, with low affinity/high capacity localized in enucleate sieve elements of plants. Plant Cell 12: 1345-1356 (2000).

Weise A, Barker L, Kuhn C, Lalonde S, Buschmann H, Frommer WB, Ward JM. A new subfamily of sucrose transporters, SUT4, with low affinity/high capacity localized in enucleate sieve elements of plants. Plant Cell 12: 1345-1355 (2000).

Weise A, Lalonde S, Kuhn C, Frommer WB, Ward JM. Introns control expression of sucrose transporter LeSUT1 in trichomes, companion cells and in guard cells. Plant Mol. Biol. 68: 251-262 (2008).

Weller JI. Maximum likelihood techniques for the mapping and analysis of quantitative trait loci with the aid of genetic markers. Biometrics 42: 627-640 (1986).

Werner M, Uehlein N, Proksch P, Kaldenhoff R. Characterization of two tomato aquaporins and expression during the incompatible interaction of tomato with the plant parasite Cuscuta reflexa. Planta 213: 550-555 (2001).

Weyman PD, Pan Z, Feng Q, Gilchrist DG, Bostock RM. DEA1, a circadian- and cold-regulated tomato gene, protects yeast cells from freezing death. Plant Mol. Biol. 62: 547-559 (2006).

Weyman PD, Pan Z, Feng Q, Gilchrist DG, Bostock RM. A circadian rhythm-regulated tomato gene is induced by arachidonic acid and Phythophthora infestans infection. Plant Physiol. 140: 235-248 (2006).

White PJ. Recent advances in fruit development and ripening: an overview. J. Exp. Bot. 53: 1995-2000 (2002).

Whitelaw CA, Lyssenko NN, Chen L, Zhou D, Mattoo AK, Tucker ML. Delayed abscission and shorter internodes correlate with a reduction in the ethylene receptor LeETR1 transcript in transgenic tomato. Plant Physiol. 128: 978-987 (2002).

Wick P, Gansel X, Oulevey C, Page V, Studer I, Durst M, Sticher L. The expression of the t-SNARE AtSNAP33 is induced by pathogens and mechanical stimulation. Plant Physiol. 132: 343-351 (2003).

Wilkinson JQ, Lanahan MB, Clark DG, Bleecker AB, Chang C, Meyerowitz EM, Klee HJ. A dominant mutant receptor from Arabidopsis confers ethylene insensitivity in heterologous plants. Nat. Biotechnol. 15: 444-447 (1997).

Wilkinson S, Corlett JE, Oger L, Davies WJ. Effects of xylem pH on transpiration from wild-type and flacca tomato leaves. A vital role for abscisic acid in preventing excessive water loss even from well-watered plants. Plant Physiol. 117: 703-709 (1998).

Wilkinson S, Davies WJ. Manipulation of the apoplastic pH of intact plants mimics stomatal and growth responses to water availability and microclimatic variation. J. Exp. Bot. 59: 619-631 (2008).

Williams JS, Hall SA, Hawkesford MJ, Beale MH, Cooper RM. Elemental sulfur and thiol accumulation in tomato and defense against a fungal vascular pathogen. Plant Physiol. 128: 150-159 (2002).

Wilson C, Soliman MS, Shannon MC. Electrostatic changes in root plasma membrane of glycophytic and halophytic species of tomato. Plant Sci. 169: 805-811 (2005).

Windt CW, Vergeldt FJ, DE Jager PA, VAN As H. MRI of long-distance water transport: a comparison of the phloem and xylem flow characteristics and dynamics in poplar, castor bean, tomato and tobacco. Plant Cell Environ. 29: 1715-1729 (2006).

Wohlgemuth H, Mittelstrass K, Kschieschan S, Bender J, Weigel HJ, Overmyer K, Kangasjarvi J, Sandermann H, Langebartels C. Activation of an oxidative burst is a general feature of sensitive plants exposed to the air pollutant ozone. Plant Cell Environ. 25: 717-726 (2002).

Woolley LC, James DJ, Manning K. Purification and properties of an endo-beta-1,4-glucanase from strawberry and down-regulation of the corresponding gene, cel1. Planta 214: 11-21 (2001).

Wu AJ, Andriotis VM, Durrant MC, Rathjen JP. A patch of surface-exposed residues mediates negative regulation of immune signaling by tomato Pto kinase. Plant Cell 16: 2809-2821 (2004).

Wu CT, Bradford KJ. Class I chitinase and beta-1,3-glucanase are differentially regulated by wounding, methyl jasmonate, ethylene, and gibberellin in tomato seeds and leaves. Plant Physiol. 133: 263-273 (2003).

Wu K, Tian L, Hollingworth J, Brown DC, Miki B. Functional analysis of tomato Pti4 in Arabidopsis. Plant Physiol. 128: 30-37 (2002).

Wu Q, Szakacs-Dobozi M, Hemmat M, Hrazdina G. Endopolygalacturonase in apples (Malus domestica) and its expression during fruit ripening. Plant Physiol. 102: 219-225 (1993).

Wulff BB, Kruijt M, Collins PL, Thomas CM, Ludwig AA, De Wit PJ, Jones JD. Gene shuffling-generated and natural variants of the tomato resistance gene Cf-9 exhibit different auto-necrosis-inducing activities in Nicotiana species. Plant J. 40: 942-956 (2004).

Wurthner JU, Mukhopadhyay AK, Peimann CJ. A cellular automaton model of cellular signal transduction. Comput. Biol. Med. 30: 1-21 (2000).

Xiao F, He P, Abramovitch RB, Dawson JE, Nicholson LK, Sheen J, Martin GB. The N-terminal region of Pseudomonas type III effector AvrPtoB elicits Pto-dependent immunity and has two distinct virulence determinants. Plant J. 52: 595-614 (2007).

Xiao F, Lu M, Li J, Zhao T, Yi SY, Thara VK, Tang X, Zhou JM. Pto mutants differentially activate Prf-dependent, avrPto-independent resistance and gene-for-gene resistance. Plant Physiol. 131: 1239-1249 (2003).

Xiao F, Tang X, Zhou JM. Expression of 35s::pto globally activates defense-related genes in tomato plants. Plant Physiol. 126: 1637-1645 (2001).

Xiao H, Jiang N, Schaffner E, Stockinger EJ, van der Knaap E. A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science 319: 1527-1530 (2008).

Xing JP, Li XY, Luo YY, Gianfagna TJ, Janes HW. Isolation and expression analysis of two tomato ADP-glucose pyrophosphorylase S (large) subunit gene promoters. Plant Sci. 169: 882-893 (2005).

Xu GH, Chague V, Melamed-Bessudo C, Kapulnik Y, Jain A, Raghothama KG, Levy AA, Silber A. Functional characterization of LePT4: a phosphate transporter in tomato with mycorrhiza-enhanced expression. J. Exp. Bot. 58: 2491-2501 (2007).

Xu J, Tan L, Lamport DT, Showalter AM, Kieliszewski MJ. The O-Hyp glycosylation code in tobacco and Arabidopsis and a proposed role of Hyp-glycans in secretion. Phytochemistry 69: 1631-1640 (2008).

Xu P, Narasimhan ML, Samson T, Coca MA, Huh GH, Zhou J, Martin GB, Hasegawa PM, Bressan RA. A nitrilase-like protein interacts with GCC box DNA-binding proteins involved in ethylene and defense responses. Plant Physiol. 118: 867-974 (1998).

Xu P, Rogers SJ, Roossinck MJ. Expression of antiapoptotic genes bcl-xL and ced-9 in tomato enhances tolerance to viral-induced necrosis and abiotic stress. Proc. Natl. Acad. Sci. U.S.A. 101: 15805-15810 (2004).

Xu P, Roossinck MJ. Cucumber mosaic virus D satellite RNA-induced programmed cell death in tomato. Plant Cell 12: 1079-1092 (2000).

Xu WF, Shi WM. Expression profiling of the 14-3-3 gene family in response to salt stress and potassium and iron deficiencies in young tomato (Solanum lycopersicum) roots: analysis by real-time RT-PCR. Ann. Bot. (Lond.) 98: 965-974 (2006).

Xu X, Martin B, Comstock JP, Vision TJ, Tauer CG, Zhao B, Pausch RC, Knapp S. Fine mapping a QTL for carbon isotope composition in tomato. Theor. Appl. Genet. 117: 221-233 (2008).

Xu Z, Escamilla-Trevino L, Zeng L, Lalgondar M, Bevan D, Winkel B, Mohamed A, Cheng CL, Shih MC, Poulton J, Esen A. Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1. Plant Mol. Biol. 55: 343-367 (2004).

Xu ZF, Qi WQ, Ouyang XZ, Yeung E, Chye ML. A proteinase inhibitor II of Solanum americanum is expressed in phloem. Plant Mol. Biol. 47: 727-738 (2001).

Xudong Cheng LL, Ling HQ. Isolation and characterization of Fe(III)-chelate reductase gene LeFRO1 in tomato. Plant Mol. Biol. 54: 125-136 (2004).

Yaeno T, Iba K. BAH1/NLA, a RING-type ubiquitin E3 ligase, regulates the accumulation of salicylic acid and immune responses to Pseudomonas syringae DC3000. Plant Physiol. 148: 1032-1041 (2008).

Yaeno T, Matsuda O, Iba K. Role of chloroplast trienoic fatty acids in plant disease defense responses. Plant J. 40: 931-941 (2004).

Yamagata H, Uesugi M, Saka K, Iwasaki T, Aizono Y. Molecular cloning and characterization of a cDNA and a gene for subtilisin-like serine proteases from rice (Oryza sativa L.) and Arabidopsis thaliana. Biosci. Biotechnol. Biochem. 64: 1947-1957 (2000).

Yamamizo C, Kuchimura K, Kobayashi A, Katou S, Kawakita K, Jones JD, Doke N, Yoshioka H. Rewiring mitogen-activated protein kinase cascade by positive feedback confers potato blight resistance. Plant Physiol. 140: 681-692 (2006).

Yamamoto S, Wakayama M, Tachiki T. Cloning and expression of Pseudomonas taetrolens Y-30 gene encoding glutamine synthetase: an enzyme available for theanine production by coupled fermentation with energy transfer. Biosci. Biotechnol. Biochem. 70: 500-507 (2006).

Yamasaki S, Fujii N, Takahashi H. Photoperiodic regulation of CS-ACS2, CS-ACS4 and CS-ERS gene expression contributes to the femaleness of cucumber flowers through diurnal ethylene production under short-day conditions. Plant Cell Environ. 26: 537-546 (2003).

Yan HP, Kang MZ, de Reffye P, Dingkuhn M. A dynamic, architectural plant model simulating resource-dependent growth. Ann. Bot. (Lond.) 93: 591-602 (2004).

Yang CW, Gonzalez-Lamothe R, Ewan RA, Rowland O, Yoshioka H, Shenton M, Ye H, O'Donnell E, Jones JD, Sadanandom A. The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense. Plant Cell 18: 1084-1098 (2006).

Yang JY, Sun Y, Sun AQ, Yi SY, Qin J, Li MH, Liu J. The involvement of chloroplast HSP100/ClpB in the acquired thermotolerance in tomato. Plant Mol. Biol. 62: 385-395 (2006).

Yang TF, Gonzalez-Carranza ZH, Maunders MJ, Roberts JA. Ethylene and the regulation of senescence processes in transgenic Nicotiana sylvestris plants. Ann. Bot. (Lond.) 101: 301-310 (2008).

Yasuta T, Satoh S, Minamisawa K. New assay for rhizobitoxine based on inhibition of 1-aminocyclopropane-1-carboxylate synthase. Appl. Environ. Microbiol. 65: 849-852 (1999).

Ye ZH. Association of caffeoyl coenzyme A 3-O-methyltransferase expression with lignifying tissues in several dicot plants. Plant Physiol. 115: 1341-1350 (1997).

Yen HC, Lee S, Tanksley SD, Lanahan MB, Klee HJ, Giovannoni JJ. The tomato Never-ripe locus regulates ethylene-inducible gene expression and is linked to a homolog of the Arabidopsis ETR1 gene. Plant Physiol. 107: 1343-1353 (1995).

Yesbergenova Z, Yang G, Oron E, Soffer D, Fluhr R, Sagi M. The plant Mo-hydroxylases aldehyde oxidase and xanthine dehydrogenase have distinct reactive oxygen species signatures and are induced by drought and abscisic acid. Plant J. 42: 862-876 (2005).

Yi JY, Seo HW, Yang MS, Robb EJ, Nazar RN, Lee SW. Plant defense gene promoter enhances the reliability of shiva-1 gene-induced resistance to soft rot disease in potato. Planta 220: 165-171 (2004).

Yi SY, Kim JH, Joung YH, Lee S, Kim WT, Yu SH, Choi D. The pepper transcription factor CaPF1 confers pathogen and freezing tolerance in Arabidopsis. Plant Physiol. 136: 2862-2874 (2004).

Yi Y, Guerinot ML. Genetic evidence that induction of root Fe(III) chelate reductase activity is necessary for iron uptake under iron deficiency. Plant J. 10: 835-844 (1996).

Yin T, Wu H, Zhang S, Lu H, Zhang L, Xu Y, Chen D, Liu J. Two negative cis-regulatory regions involved in fruit-specific promoter activity from watermelon (Citrullus vulgaris S.). J. Exp. Bot. 60: 169-185 (2009).

Yokotani N, Tamura S, Nakano R, Inaba A, Kubo Y. Characterization of a novel tomato EIN3-like gene (LeEIL4). J. Exp. Bot. 54: 2775-2776 (2003).

Yoshida H, Wang KL, Chang CM, Mori K, Uchida E, Ecker JR. The ACC synthase TOE sequence is required for interaction with ETO1 family proteins and destabilization of target proteins. Plant Mol. Biol. 62: 427-437 (2006).

Yoshida K, Kaothien P, Matsui T, Kawaoka A, Shinmyo A. Molecular biology and application of plant peroxidase genes. Appl. Microbiol. Biotechnol. 60: 665-670 (2003).

You WQ, Barker AV. Herbicidal actions of root-applied glufosinate ammonium on tomato plants. J. Am. Soc. Hortic. Sci. 127: 200-204 (2002).

Yu LX, Chamberland H, Lafontaine JG, Tabaeizadeh Z. Negative regulation of gene expression of a novel proline-, threonine-, and glycine-rich protein by water stress in Lycopersicon chilense. Genome 39: 1185-1193 (1996).

Yun SJ, Oh SH. Cloning and characterization of a tobacco cDNA encoding calcium/calmodulin-dependent glutamate decarboxylase. Mol. Cells 8: 125-129 (1998).

Zakhleniuk OV, Raines CA, Lloyd JC. pho3: a phosphorus-deficient mutant of Arabidopsis thaliana (L.) Heynh.. Planta 212: 529-534 (2001).

Zanor MI, Rambla JL, Chaib J, Steppa A, Medina A, Granell A, Fernie AR, Causse M. Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents. J. Exp. Bot. 60: 2139-2154 (2009).

Zegzouti H, Jones B, Frasse P, Marty C, Maitre B, Latche A, Pech JC, Bouzayen M. Ethylene-regulated gene expression in tomato fruit: characterization of novel ethylene-responsive and ripening-related genes isolated by differential display. Plant J. 18: 589-600 (1999).

Zegzouti H, Jones B, Marty C, Lelievre JM, Latche A, Pech JC, Bouzayen M. ER5, a tomato cDNA encoding an ethylene-responsive LEA-like protein: characterization and expression in response to drought, ABA and wounding. Plant Mol. Biol. 35: 847-854 (1997).

Zeidler D, Zahringer U, Gerber I, Dubery I, Hartung T, Bors W, Hutzler P, Durner J. Innate immunity in Arabidopsis thaliana: lipopolysaccharides activate nitric oxide synthase (NOS) and induce defense genes. Proc. Natl. Acad. Sci. U.S.A. 101: 15811-15816 (2004).

Zeier J, Delledonne M, Mishina T, Severi E, Sonoda M, Lamb C. Genetic elucidation of nitric oxide signaling in incompatible plant-pathogen interactions. Plant Physiol. 136: 2875-2886 (2004).

Zemach A, Li Y, Ben-Meir H, Oliva M, Mosquna A, Kiss V, Avivi Y, Ohad N, Grafi G. Different domains control the localization and mobility of LIKE HETEROCHROMATIN PROTEIN1 in Arabidopsis nuclei. Plant Cell 18: 133-145 (2006).

Zhang D, Wengier D, Shuai B, Gui CP, Muschietti J, McCormick S, Tang WH. The pollen receptor kinase LePRK2 mediates growth-promoting signals and positively regulates pollen germination and tube growth. Plant Physiol. 148: 1368-1379 (2008).

Zhang H, Huang Z, Xie B, Chen Q, Tian X, Zhang X, Zhang H, Lu X, Huang D, Huang R. The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco. Planta 220: 262-270 (2004).

Zhang H, Yang Y, Zhang Z, Chen J, Wang XC, Huang R. Expression of the ethylene response factor gene TSRF1 enhances abscisic acid responses during seedling development in tobacco. Planta 228: 777-787 (2008).

Zhang H, Zhang D, Chen J, Yang Y, Huang Z, Huang D, Wang XC, Huang R. Tomato stress-responsive factor TSRF1 interacts with ethylene responsive element GCC box and regulates pathogen resistance to Ralstonia solanacearum. Plant Mol. Biol. 55: 825-834 (2004).

Zhang M, Yuan B, Leng P. The role of ABA in triggering ethylene biosynthesis and ripening of tomato fruit. J. Exp. Bot. 60: 1579-1588 (2009).

Zhang X, Fowler SG, Cheng H, Lou Y, Rhee SY, Stockinger EJ, Thomashow MF. Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis. Plant J. 39: 905-919 (2004).

Zhang X, Zhang Z, Chen J, Chen Q, Wang XC, Huang R. Expressing TERF1 in tobacco enhances drought tolerance and abscisic acid sensitivity during seedling development. Planta 222: 494-501 (2005).

Zhang Y, Brown G, Whetten R, Loopstra CA, Neale D, Kieliszewski MJ, Sederoff RR. An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine. Plant Mol. Biol. 52: 91-102 (2003).

Zhang YC, Gong SF, Li QH, Sang Y, Yang HQ. Functional and signaling mechanism analysis of rice CRYPTOCHROME 1. Plant J. 46: 971-983 (2006).

Zhang Z, Barlow JN, Baldwin JE, Schofield CJ. Metal-catalyzed oxidation and mutagenesis studies on the iron(II) binding site of 1-aminocyclopropane-1-carboxylate oxidase. Biochemistry 36: 15999-16007 (1997).

Zhang Z, Zhang H, Quan R, Wang XC, Huang R. Transcriptional regulation of the ethylene response factor LeERF2 in the expression of ethylene biosynthesis genes controls ethylene production in tomato and tobacco. Plant Physiol. 150: 365-377 (2009).

Zhao T, Ling HQ. Effects of pH and nitrogen forms on expression profiles of genes involved in iron homeostasis in tomato. Plant Cell Environ. 30: 518-527 (2007).

Zhao TY, Martin D, Meeley RB, Downie B. Expression of the maize GALACTINOL SYNTHASE gene family: (II) Kernel abscission, environmental stress and myo-inositol influences accumulation of transcript in developing seeds and callus cells. Physiol. Plant. 121: 647-655 (2004).

Zhao TY, Thacker R, Corum JW, Snyder JC, Meeley RB, Obendorf RL, Downie B. Expression of the maize GALACTINOL SYNTHASE gene family: (I) Expression of two different genes during seed development and germination. Physiol. Plant. 121: 634-646 (2004).

Zhao Y, Thilmony R, Bender CL, Schaller A, He SY, Howe GA. Virulence systems of Pseudomonas syringae pv. tomato promote bacterial speck disease in tomato by targeting the jasmonate signaling pathway. Plant J. 36: 485-499 (2003).

Zheng W, Zhai Q, Sun J, Li CB, Zhang L, Li H, Zhang X, Li S, Xu Y, Jiang H, Wu X, Li C. Bestatin, an inhibitor of aminopeptidases, provides a chemical genetics approach to dissect jasmonate signaling in Arabidopsis. Plant Physiol. 141: 1400-1413 (2006).

Zhong S, Lin Z, Grierson D. Tomato ethylene receptor-CTR interactions: visualization of NEVER-RIPE interactions with multiple CTRs at the endoplasmic reticulum. J. Exp. Bot. 59: 965-972 (2008).

Zhou D, Kalaitzis P, Mattoo AK, Tucker ML. The mRNA for an ETR1 homologue in tomato is constitutively expressed in vegetative and reproductive tissues. Plant Mol. Biol. 30: 1331-1338 (1996).

Zhou H, Huxtable S, Xin H, Li N. Enhanced high-level expression of soluble 1-aminocyclopropane-1-carboxylase synthase and rapid purification by expanded-bed adsorption. Protein Expr. Purif. 14: 178-184 (1998).

Zhou H, Wang HW, Zhu K, Sui SF, Xu P, Yang SF, Li N. The multiple roles of conserved arginine 286 of 1-aminocyclopropane-1-carboxylate synthase. Coenzyme binding, substrate binding, and beyond. Plant Physiol. 121: 913-919 (1999).

Zhou J, Zhang H, Yang Y, Zhang Z, Zhang H, Hu X, Chen J, Wang XC, Huang R. Abscisic acid regulates TSRF1-mediated resistance to Ralstonia solanacearum by modifying the expression of GCC box-containing genes in tobacco. J. Exp. Bot. 59: 645-652 (2008).

Zhou R, Cutler AJ, Ambrose SJ, Galka MM, Nelson KM, Squires TM, Loewen MK, Jadhav AS, Ross AR, Taylor DC, Abrams SR. A new abscisic acid catabolic pathway. Plant Physiol. 134: 361-369 (2004).

Zhou S, Sauvé R, Thannhauser TW. Proteome changes induced by aluminium stress in tomato roots. J. Exp. Bot. 60: 1849-1857 (2009).

Zolla L, Rinalducci S, Timperio AM, Huber CG. Proteomics of light-harvesting proteins in different plant species. Analysis and comparison by liquid chromatography-electrospray ionization mass spectrometry. Photosystem I. Plant Physiol. 130: 1938-1950 (2002).

Zou LP, Li HX, Ouyang B, Zhang JH, Ye ZB. Molecular cloning, expression and mapping analysis of a novel cytosolic ascorbate peroxidase gene from tomato. DNA Seq. 16: 456-461 (2005).

Zuchi S, Cesco S, Varanini Z, Pinton R, Astolfi S. Sulphur deprivation limits Fe-deficiency responses in tomato plants. Planta 230: 85-94 (2009).

Zwieniecki MA, Orians CM, Melcher PJ, Holbrook NM. Ionic control of the lateral exchange of water between vascular bundles in tomato. J. Exp. Bot. 54: 1399-1405 (2003).

Number of references = 1504