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HORT640 - Metabolic Plant Physiology
References, tryptophan decarboxylase
Alexander FW, Sandmeier E, Mehta PK, Christen P. Evolutionary relationships among pyridoxal-5'-phosphate-dependent enzymes. Regio-specific alpha, beta and gamma families. Eur. J. Biochem. 219: 953-960 (1994).
Blankenhorn D, Phillips J, Slonczewski JL. Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J. Bacteriol. 181: 2209-2216 (1999).
Brandl MT, Lindow SE. Cloning and characterization of a locus encoding an indolepyruvate decarboxylase involved in indole-3-acetic acid synthesis in Erwinia herbicola. Appl. Environ. Microbiol. 62: 4121-4128 (1996).
Campos-Tamayo F, Hernandez-Domínguez E, Vazquez-Flota F. Vindoline formation in shoot cultures of Catharanthus roseus is synchronously activated with morphogenesis through the last biosynthetic step. Ann. Bot. (Lond.) 102: 409-415 (2008).
Canel C, Lopes-Cardoso MI, Whitmer S, van der Fits L, Pasquali G, van der Heijden R, Hoge JH, Verpoorte R. Effects of over-expression of strictosidine synthase and tryptophan decarboxylase on alkaloid production by cell cultures of Catharanthus roseus. Planta 205: 414-419 (1998).
Chavadej S, Brisson N, McNeil JN, De Luca V. Redirection of tryptophan leads to production of low indole glucosinolate canola. Proc. Natl. Acad. Sci. U.S.A. 91: 2166-2170 (1994).
De Luca V. Chapter 9. Metabolic Engineering of Crops with the Tryptophan Decarboxylase of Catharanthus roseus. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 179-194 (2000).
De Luca V, Laflamme P. The expanding universe of alkaloid biosynthesis. Curr. Opin. Plant Biol. 4: 225-233 (2001).
De Luca V, Marineau C, Brisson N. Molecular cloning and analysis of cDNA encoding a plant tryptophan decarboxylase: comparison with animal dopa decarboxylases. Proc. Natl. Acad. Sci. U.S.A. 86: 2582-2586 (1989).
Di Fiore S, Li Q, Leech MJ, Schuster F, Emans N, Fischer R, Schillberg S. Targeting tryptophan decarboxylase to selected subcellular compartments of tobacco plants affects enzyme stability and in vivo function and leads to a lesion-mimic phenotype. Plant Physiol. 129: 1160-1169 (2002).
Dubouzet JG, Ishihara A, Matsuda F, Miyagawa H, Iwata H, Wakasa K. Integrated metabolomic and transcriptomic analyses of high-tryptophan rice expressing a mutant anthranilate synthase alpha subunit. J. Exp. Bot. 58: 3309-3321 (2007).
Eilert U, De Luca V, Constabel F, Kurz WG. Elicitor-mediated induction of tryptophan decarboxylase and strictosidine synthase activities in cell suspension cultures of Catharanthus roseus. Arch. Biochem. Biophys. 254: 491-497 (1987).
Facchini PJ, De Luca V. Differential and tissue-specific expression of a gene family for tyrosine/dopa decarboxylase in opium poppy. J. Biol. Chem. 269: 26684-26690 (1994).
Facchini PJ, DiCosmo F. Secondary metabolite biosynthesis in cultured cells of Catharanthus roseus (L.) G. Don immobilized by adhesion to glass fibres. Appl. Microbiol. Biotechnol. 35: 382-392 (1991).
Facchini PJ, Huber-Allanach KL, Tari LW. Plant aromatic L-amino acid decarboxylases: evolution, biochemistry, regulation, and metabolic engineering applications. Phytochemistry 54: 121-138 (2000).
Fukuoka SI, Ishiguro K, Tanabe A, Egashira Y, Sanada H, Fukuwatari T, Shibata K. Identification and expression of alpha cDNA encoding human 2-amino-3- carboxymuconate-6-semialdehyde decarboxylase (ACMSD): a key enzyme for the tryptophan-niacine pathway and quinolinate hypothesis. Adv. Exp. Med. Biol. 527: 443-453 (2003).
Goddijn OJ, de Kam RJ, Zanetti A, Schilperoort RA, Hoge JH. Auxin rapidly down-regulates transcription of the tryptophan decarboxylase gene from Catharanthus roseus. Plant Mol. Biol. 18: 1113-1120 (1992).
Goddijn OJ, Lohman FP, de Kam RJ, Schilperoort RA, Hoge JH. Nucleotide sequence of the tryptophan decarboxylase gene of Catharanthus roseus and expression of tdc-gusA gene fusions in Nicotiana tabacum. Mol. Gen. Genet. 242: 217-225 (1994).
Goddijn OJ, Pennings EJ, van der Helm P, Schilperoort RA, Verpoorte R, Hoge JH. Overexpression of a tryptophan decarboxylase cDNA in Catharanthus roseus crown gall calluses results in increased tryptamine levels but not in increased terpenoid indole alkaloid production. Transgenic Res. 4: 315-323 (1995).
Goddijn OJ, van der Duyn Schouten PM, Schilperoort RA, Hoge JH. A chimaeric tryptophan decarboxylase gene as a novel selectable marker in plant cells. Plant Mol. Biol. 22: 907-912 (1993).
Guillet G, De Luca V. Wound-inducible biosynthesis of phytoalexin hydroxycinnamic acid amides of tyramine in tryptophan and tyrosine decarboxylase transgenic tobacco lines. Plant Physiol. 137: 692-699 (2005).
Guillet G, Poupart J, Basurco J, De Luca V. Expression of tryptophan decarboxylase and tyrosine decarboxylase genes in tobacco results in altered biochemical and physiological phenotypes. Plant Physiol. 122: 933-944 (2000).
Hong SB, Peebles CA, Shanks JV, San KY, Gibson SI. Expression of the Arabidopsis feedback-insensitive anthranilate synthase holoenzyme and tryptophan decarboxylase genes in Catharanthus roseus hairy roots. J. Biotechnol. 122: 28-38 (2006).
Huai Q, Xia Y, Chen Y, Callahan B, Li N, Ke H. Crystal structures of 1-aminocyclopropane-1-carboxylate (ACC) synthase in complex with aminoethoxyvinylglycine and pyridoxal-5'-phosphate provide new insight into catalytic mechanisms. J. Biol. Chem. 276: 38210-38216 (2001).
Hughes EH, Hong SB, Gibson SI, Shanks JV, San KY. Metabolic engineering of the indole pathway in Catharanthus roseus hairy roots and increased accumulation of tryptamine and serpentine. Metab. Eng. 6: 268-276 (2004).
Iraqui I, Vissers S, Andre B, Urrestarazu A. Transcriptional induction by aromatic amino acids in Saccharomyces cerevisiae. Mol. Cell Biol. 19: 3360-3371 (1999).
Ishihara A, Hashimoto Y, Tanaka C, Dubouzet JG, Nakao T, Matsuda F, Nishioka T, Miyagawa H, Wakasa K. The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production. Plant J. 54: 481-495 (2008).
Isupov MN, Antson AA, Dodson EJ, Dodson GG, Dementieva IS, Zakomirdina LN, Wilson KS, Dauter Z, Lebedev AA, Harutyunyan EH. Crystal structure of tryptophanase. J. Mol. Biol. 276: 603-623 (1998).
Kaminaga Y, Schnepp J, Peel G, Kish CM, Ben-Nissan G, Weiss D, Orlova I, Lavie O, Rhodes D, Wood K, Porterfield DM, Cooper AJ, Schloss JV, Pichersky E, Vainstein A, Dudareva N. Plant phenylacetaldehyde synthase is a bifunctional homotetrameric enzyme that catalyzes phenylalanine decarboxylation and oxidation. J. Biol. Chem. 281: 23357-23366 (2006).
Kawalleck P, Keller H, Hahlbrock K, Scheel D, Somssich IE. A pathogen-responsive gene of parsley encodes tyrosine decarboxylase. J. Biol. Chem. 268: 2189-2194 (1993).
Koga J, Syono K, Ichikawa T, Adachi T. Involvement of L-tryptophan aminotransferase in indole-3-acetic acid biosynthesis in Enterobacter cloacae. Biochim. Biophys. Acta 1209: 241-247 (1994).
Leech MJ, May K, Hallard D, Verpoorte R, De Luca V, Christou P. Expression of two consecutive genes of a secondary metabolic pathway in transgenic tobacco: molecular diversity influences levels of expression and product accumulation. Plant Mol. Biol. 38: 765-774 (1998).
Lopez-Meyer M, Nessler CL. Tryptophan decarboxylase is encoded by two autonomously regulated genes in Camptotheca acuminata which are differentially expressed during development and stress. Plant J. 11: 1167-1175 (1997).
Mehta PK, Christen P. The molecular evolution of pyridoxal-5'-phosphate-dependent enzymes. Adv. Enzymol. Relat. Areas Mol. Biol. 74: 129-184 (2000).
Menke FL, Parchmann S, Mueller MJ, Kijne JW, Memelink J. Involvement of the octadecanoid pathway and protein phosphorylation in fungal elicitor-induced expression of terpenoid indole alkaloid biosynthetic genes in Catharanthus roseus. Plant Physiol. 119: 1289-1296 (1999).
Moreno PR, Schlatmann JE, van der Heijden R, van Gulik WM, ten Hoopen HJ, Verpoorte R, Heijnen JJ. Induction of ajmalicine formation and related enzyme activities in Catharanthus roseus cells: effect of inoculum density. Appl. Microbiol. Biotechnol. 39: 42-47 (1993).
Murata J, Luca VD. Localization of tabersonine 16-hydroxylase and 16-OH tabersonine-16-O-methyltransferase to leaf epidermal cells defines them as a major site of precursor biosynthesis in the vindoline pathway in Catharanthus roseus. Plant J. 44: 581-594 (2005).
Ouwerkerk PB, Hallard D, Verpoorte R, Memelink J. Identification of UV-B light-responsive regions in the promoter of the tryptophan decarboxylase gene from Catharanthus roseus. Plant Mol. Biol. 41: 491-503 (1999).
Ouwerkerk PB, Memelink J. Elicitor-responsive promoter regions in the tryptophan decarboxylase gene from Catharanthus roseus. Plant Mol. Biol. 39: 129-136 (1999).
Ouwerkerk PB, Trimborn TO, Hilliou F, Memelink J. Nuclear factors GT-1 and 3AF1 interact with multiple sequences within the promoter of the Tdc gene from Madagascar periwinkle: GT-1 is involved in UV light-induced expression. Mol. Gen. Genet. 261: 610-622 (1999).
Pasquali G, Goddijn OJ, de Waal A, Verpoorte R, Schilperoort RA, Hoge JH, Memelink J. Coordinated regulation of two indole alkaloid biosynthetic genes from Catharanthus roseus by auxin and elicitors. Plant Mol. Biol. 18: 1121-1131 (1992).
Pauw B, Hilliou FA, Sandonis Martin V, Chatel G, de Wolf CJ, Champion A, Pre M, van Duijn B, Kijne JW, van der Fits L, Memelink J. Zinc finger proteins act as transcriptional repressors of alkaloid biosynthesis genes in Catharanthus roseus. J. Biol. Chem. 279: 52940-52948 (2004).
Pauw B, van Duijn B, Kijne JW, Memelink J. Activation of the oxidative burst by yeast elicitor in Catharanthus roseus cells occurs independently of the activation of genes involved in alkaloid biosynthesis. Plant Mol. Biol. 55: 797-805 (2004).
Ramani S, Chelliah J. UV-B-induced signaling events leading to enhanced-production of catharanthine in Catharanthus roseus cell suspension cultures. BMC Plant Biol. 7: 61 (2007).
Renault P, Godon JJ, Goupil N, Delorme C, Corthier G, Ehrlich SD. Metabolic operons in Lactococci. Dev. Biol. Stand. 85: 431-441 (1995).
Rhodes D, Peel GJ, Dudareva N. Metabolism, secondary: engineering pathways of. In (RM Goodman, ed) Encyclopedia of Plant and Crop Science, Marcell Dekker, N.Y., pp. 720-723 (2004).
Rust E, Martin DL, Chen CH. Cofactor and tryptophan accessibility and unfolding of brain glutamate decarboxylase. Arch. Biochem. Biophys. 392: 333-340 (2001).
Sangwan RS, Mishra S, Kumar S. Direct fluorometry of phase-extracted tryptamine-based fast quantitative assay of L-tryptophan decarboxylase from Catharanthus roseus leaf. Anal. Biochem. 255: 39-46 (1998).
Schroder P, Abele C, Gohr P, Stuhlfauth-Roisch U, Grosse W. Latest on enzymology of serotonin biosynthesis in walnut seeds. Adv. Exp. Med. Biol. 467: 637-644 (1999).
Sergeeva E, Liaimer A, Bergman B. Evidence for production of the phytohormone indole-3-acetic acid by cyanobacteria. Planta 215: 229-238 (2002).
Siberil Y, Benhamron S, Memelink J, Giglioli-Guivarc'h N, Thiersault M, Boisson B, Doireau P, Gantet P. Catharanthus roseus G-box binding factors 1 and 2 act as repressors of strictosidine synthase gene expression in cell cultures. Plant Mol. Biol. 45: 477-488 (2001).
St-Pierre B, Vazquez-Flota FA, De Luca V. Multicellular compartmentation of Catharanthus roseus alkaloid biosynthesis predicts intercellular translocation of a pathway intermediate. Plant Cell 11: 887-900 (1999).
Steenhoudt O, Vanderleyden J. Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol. Rev. 24: 487-506 (2000).
Tam le T, Eymann C, Antelmann H, Albrecht D, Hecker M. Global gene expression profiling of Bacillus subtilis in response to ammonium and tryptophan starvation as revealed by transcriptome and proteome analysis. J. Mol. Microbiol. Biotechnol. 12: 121-130 (2007).
Ueno M, Shibata H, Kihara J, Honda Y, Arase S. Increased tryptophan decarboxylase and monoamine oxidase activities induce Sekiguchi lesion formation in rice infected with Magnaporthe grisea. Plant J. 36: 215-228 (2003).
Vacca RA, Christen P, Malashkevich VN, Jansonius JN, Sandmeier E. Substitution of apolar residues in the active site of aspartate aminotransferase by histidine. Effects on reaction and substrate specificity. Eur. J. Biochem. 227: 481-487 (1995).
Vazquez-Flota FA, De Luca V. Jasmonate modulates development- and light-regulated alkaloid biosynthesis in Catharanthus roseus. Phytochemistry 49: 395-402 (1998).
Wang JY, Liu ZP, Liu L, Liu C. Effects of NaCl on the growth and alkaloid content of Catharanthus roseus seedlings. Ying Yong Sheng Tai Xue Bao 19: 2143-2148 (2008).
Whitmer S, Canel C, Hallard D, Goncalves C, Verpoorte R. Influence of precursor availability on alkaloid accumulation by transgenic cell line of Catharanthus roseus. Plant Physiol. 116: 853-857 (1998).
Yao K, De Luca V, Brisson N. Creation of a metabolic sink for tryptophan alters the phenylpropanoid pathway and the susceptibility of potato to Phytophthora infestans. Plant Cell 7: 1787-1799 (1995).
Number of references = 60
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