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HORT640 - Metabolic Plant Physiology
References, starch branching enzyme
Baga M, Glaze S, Mallard CS, Chibbar RN. A starch-branching enzyme gene in wheat produces alternatively spliced transcripts. Plant Mol. Biol. 40: 1019-1030 (1999).
Baga M, Nair RB, Repellin A, Scoles GJ, Chibbar RN. Isolation of a cDNA encoding a granule-bound 152-kilodalton starch-branching enzyme in wheat. Plant Physiol. 124: 253-264 (2000).
Ball SG, Morell MK. From bacterial glycogen to starch: understanding the biogenesis of the plant starch granule. Annu. Rev. Plant Biol. 54: 207-233 (2003).
Beatty MK, Rahman A, Cao H, Woodman W, Lee M, Myers AM, James MG. Purification and molecular genetic characterization of ZPU1, a pullulanase-type starch-debranching enzyme from maize. Plant Physiol. 119: 255-266 (1999).
Blauth SL, Kim KN, Klucinec J, Shannon JC, Thompson D, Guiltinan M. Identification of Mutator insertional mutants of starch-branching enzyme 1 (sbe1) in Zea mays L. Plant Mol. Biol. 48: 287-297 (2002).
Carvalho LJ, de Souza CR, de Mattos Cascardo JC, Junior CB, Campos L. Identification and characterization of a novel cassava (Manihot esculenta Crantz) clone with high free sugar content and novel starch. Plant Mol. Biol. 56: 643-659 (2004).
Colleoni C, Dauvillee D, Mouille G, Buleon A, Gallant D, Bouchet B, Morell M, Samuel M, Delrue B, d'Hulst C, Bliard C, Nuzillard JM, Ball S. Genetic and biochemical evidence for the involvement of alpha-1,4 glucanotransferases in amylopectin synthesis. Plant Physiol. 120: 993-1004 (1999).
Dauvillee D, Colleoni C, Shaw E, Mouille G, D'Hulst C, Morell M, Samuel MS, Bouchet B, Gallant DJ, Sinskey A, Ball S. Novel, starch-like polysaccharides are synthesized by an unbound form of granule-bound starch synthase in glycogen-accumulating mutants of Chlamydomonas reinhardtii. Plant Physiol. 119: 321-330 (1999).
Delatte T, Trevisan M, Parker ML, Zeeman SC. Arabidopsis mutants Atisa1 and Atisa2 have identical phenotypes and lack the same multimeric isoamylase, which influences the branch point distribution of amylopectin during starch synthesis. Plant J. 41: 815-830 (2005).
Dian W, Jiang H, Wu P. Evolution and expression analysis of starch synthase III and IV in rice. J. Exp. Bot. 56: 623-632 (2005).
Dinges JR, Colleoni C, James MG, Myers AM. Mutational analysis of the pullulanase-type debranching enzyme of maize indicates multiple functions in starch metabolism. Plant Cell 15: 666-680 (2003).
Dumez S, Wattebled F, Dauvillee D, Delvalle D, Planchot V, Ball SG, D'Hulst C. Mutants of Arabidopsis lacking starch branching enzyme II substitute plastidial starch synthesis by cytoplasmic maltose accumulation. Plant Cell 18: 2694-2709 (2006).
Fujita N, Kubo A, Francisco PB Jr, Nakakita M, Harada K, Minaka N, Nakamura Y. Purification, characterization, and cDNA structure of isoamylase from developing endosperm of rice. Planta 208: 283-293 (1999).
Fujita N, Toyosawa Y, Utsumi Y, Higuchi T, Hanashiro I, Ikegami A, Akuzawa S, Yoshida M, Mori A, Inomata K, Itoh R, Miyao A, Hirochika H, Satoh H, Nakamura Y. Characterization of pullulanase (PUL)-deficient mutants of rice (Oryza sativa L.) and the function of PUL on starch biosynthesis in the developing rice endosperm. J. Exp. Bot. 60: 1009-1023 (2009).
Gao M, Fisher DK, Kim KN, Shannon JC, Guiltinan MJ. Independent genetic control of maize starch-branching enzymes IIa and IIb. Isolation and characterization of a Sbe2a cDNA. Plant Physiol. 114: 69-78 (1997).
Gao M, Wanat J, Stinard PS, James MG, Myers AM. Characterization of dull1, a maize gene coding for a novel starch synthase. Plant Cell 10: 399-412 (1998).
Geigenberger P, Stitt M, Fernie AR. Metabolic control analysis and regulation of the conversion of sucrose to starch in growing potato tubers. Plant Cell Environ. 27: 655-673 (2004).
Ghiena C, Schulz M, Schnabl H. Starch degradation and distribution of the starch-degrading enzymes in Vicia faba leaves. Diurnal oscillation of amylolytic activity and starch content in chloroplasts. Plant Physiol. 101: 73-79 (1993).
Grimaud F, Rogniaux H, James MG, Myers AM, Planchot V. Proteome and phosphoproteome analysis of starch granule-associated proteins from normal maize and mutants affected in starch biosynthesis. J. Exp. Bot. 59: 3395-3406 (2008).
Hamada S, Ito H, Ueno H, Takeda Y, Matsui H. The N-terminal region of the starch-branching enzyme from Phaseolus vulgaris L. is essential for optimal catalysis and structural stability. Phytochemistry 68: 1367-1375 (2007).
Han Y, Bendik E, Sun FJ, Gasic K, Korban SS. Genomic isolation of genes encoding starch branching enzyme II (SBEII) in apple: toward characterization of evolutionary disparity in SbeII genes between monocots and eudicots. Planta 226: 1265-1276 (2007).
Hennen-Bierwagen TA, Lin Q, Grimaud F, Planchot V, Keeling PL, James MG, Myers AM. Proteins from multiple metabolic pathways associate with starch biosynthetic enzymes in high molecular weight complexes: a model for regulation of carbon allocation in maize amyloplasts. Plant Physiol. 149: 1541-1559 (2009).
James MG, Denyer K, Myers AM. Starch synthesis in the cereal endosperm. Curr. Opin. Plant Biol. 6: 215-222 (2003).
James MG, Robertson DS, Myers AM. Characterization of the maize gene sugary1, a determinant of starch composition in kernels. Plant Cell 7: 417-429 (1995).
Jiang H, Dian W, Wu P. Effect of high temperature on fine structure of amylopectin in rice endosperm by reducing the activity of the starch branching enzyme. Phytochemistry 63: 53-59 (2003).
Jobling SA, Schwall GP, Westcott RJ, Sidebottom CM, Debet M, Gidley MJ, Jeffcoat R, Safford R. A minor form of starch branching enzyme in potato (Solanum tuberosum L.) tubers has a major effect on starch structure: cloning and characterisation of multiple forms of SBE A. Plant J. 18: 163-171 (1999).
Kim KN, Fisher DK, Gao M, Guiltinan MJ. Molecular cloning and characterization of the Amylose-Extender gene encoding starch branching enzyme IIB in maize. Plant Mol. Biol. 38: 945-956 (1998).
Kim KN, Guiltinan MJ. Identification of cis-acting elements important for expression of the starch-branching enzyme I gene in maize endosperm. Plant Physiol. 121: 225-236 (1999).
Kim WS, Kim J, Krishnan HB, Nahm BH. Expression of Escherichia coli branching enzyme in caryopses of transgenic rice results in amylopectin with an increased degree of branching. Planta 220: 689-695 (2005).
Kram AM, Oostergetel GT, Van Bruggen E. Localization of branching enzyme in potato tuber cells with the use of immunoelectron microscopy. Plant Physiol. 101: 237-243 (1993).
Kubo A, Fujita N, Harada K, Matsuda T, Satoh H, Nakamura Y. The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm. Plant Physiol. 121: 399-410 (1999).
Larsson CT, Khoshnoodi J, Ek B, Rask L, Larsson H. Molecular cloning and characterization of starch-branching enzyme II from potato. Plant Mol. Biol. 37: 505-511 (1998).
Li L, Ilarslan H, James MG, Myers AM, Wurtele ES. Genome wide co-expression among the starch debranching enzyme genes AtISA1, AtISA2, and AtISA3 in Arabidopsis thaliana. J. Exp. Bot. 58: 3323-3342 (2007).
Miyazawa Y, Sakai A, Miyagishima Sy, Takano H, Kawano S, Kuroiwa T. Auxin and cytokinin have opposite effects on amyloplast development and the expression of starch synthesis genes in cultured bright yellow-2 tobacco cells. Plant Physiol. 121: 461-470 (1999).
Morell MK, Blennow A, Kosar-Hashemi B, Samuel MS. Differential expression and properties of starch branching enzyme isoforms in developing wheat endosperm. Plant Physiol. 113: 201-208 (1997).
Morell MK, Kosar-Hashemi B, Cmiel M, Samuel MS, Chandler P, Rahman S, Buleon A, Batey IL, Li Z. Barley sex6 mutants lack starch synthase IIa activity and contain a starch with novel properties. Plant J. 34: 173-185 (2003).
Mu-Forster C, Huang R, Powers JR, Harriman RW, Knight M, Singletary GW, Keeling PL, Wasserman BP. Physical association of starch biosynthetic enzymes with starch granules of maize endosperm. Granule-associated forms of starch synthase I and starch branching enzyme II. Plant Physiol. 111: 821-829 (1996).
Mu-Forster C, Wasserman BP. Surface localization of zein storage proteins in starch granules from maize endosperm. Proteolytic removal by thermolysin and in vitro cross-linking of granule-associated polypeptides. Plant Physiol. 116: 1563-1571 (1998).
Nakamura Y, Umemoto T, Ogata N, Kuboki Y, Yano M, Sasaki T. Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: purification, cDNA and chromosomal localization of the gene. Planta 199: 209-218 (1996).
Nishi A, Nakamura Y, Tanaka N, Satoh H. Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm. Plant Physiol. 127: 459-472 (2001).
Ohdan T, Francisco PB Jr, Sawada T, Hirose T, Terao T, Satoh H, Nakamura Y. Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J. Exp. Bot. 56: 3229-3244 (2005).
Peng M, Gao M, Baga M, Hucl P, Chibbar RN. Starch-branching enzymes preferentially associated with A-type starch granules in wheat endosperm. Plant Physiol. 124: 265-272 (2000).
Preiss J. ADPglucose pyrophosphorylase: basic science and applications in biotechnology. Biotechnol. Annu. Rev. 2: 259-279 (1996).
Qu le Q, Takaiwa F. Evaluation of tissue specificity and expression strength of rice seed component gene promoters in transgenic rice. Plant Biotechnol. J. 2: 113-125 (2004).
Rahman A, Wong Ks, Jane Jl, Myers AM, James MG. Characterization of SU1 isoamylase, a determinant of storage starch structure in maize. Plant Physiol. 117: 425-435 (1998).
Regina A, Kosar-Hashemi B, Li Z, Pedler A, Mukai Y, Yamamoto M, Gale K, Sharp PJ, Morell MK, Rahman S. Starch branching enzyme IIb in wheat is expressed at low levels in the endosperm compared to other cereals and encoded at a non-syntenic locus. Planta 222: 899-909 (2005).
Satoh H, Nishi A, Yamashita K, Takemoto Y, Tanaka Y, Hosaka Y, Sakurai A, Fujita N, Nakamura Y. Starch-branching enzyme I-deficient mutation specifically affects the structure and properties of starch in rice endosperm. Plant Physiol. 133: 1111-1121 (2003).
Sawada T, Francisco PB Jr, Aihara S, Utsumi Y, Yoshida M, Oyama Y, Tsuzuki M, Satoh H, Nakamura Y. Chlorella starch branching enzyme II (BEII) can complement the function of BEIIb in rice endosperm. Plant Cell Physiol. 50: 1062-1074 (2009).
Seo BS, Kim S, Scott MP, Singletary GW, Wong KS, James MG, Myers AM. Functional interactions between heterologously expressed starch-branching enzymes of maize and the glycogen synthases of Brewer's yeast. Plant Physiol. 128: 1189-1199 (2002).
Souleyre EJF, Iannetta PPM, Ross HA, Hancock RD, Shepherd LVT, Viola R, Taylor MA, Davies HV. Starch metabolism in developing strawberry (Fragaria x ananassa) fruits. Physiol. Plant. 121: 369-376 (2004).
Stahl Y, Coates S, Bryce JH, Morris PC. Antisense downregulation of the barley limit dextrinase inhibitor modulates starch granule size distribution, starch composition and amylopectin structure. Plant J. 39: 599-611 (2004).
Streb S, Delatte T, Umhang M, Eicke S, Schorderet M, Reinhardt D, Zeeman SC. Starch granule biosynthesis in Arabidopsis is abolished by removal of all debranching enzymes but restored by the subsequent removal of an endoamylase. Plant Cell 20: 3448-3466 (2008).
Sun C, Sathish P, Ahlandsberg S, Jansson C. The two genes encoding starch-branching enzymes IIa and IIb are differentially expressed in barley. Plant Physiol. 118: 37-49 (1998).
Sun C, Sathish P, Ahlandsberg S, Jansson C. Analyses of isoamylase gene activity in wild-type barley indicate its involvement in starch synthesis. Plant Mol. Biol. 40: 431-443 (1999).
Sweetlove LJ, Burrell MM, ap Rees T. Characterization of transgenic potato (Solanum tuberosum) tubers with increased ADPglucose pyrophosphorylase. Biochem. J. 320: 487-492 (1996).
Tetlow IJ, Wait R, Lu Z, Akkasaeng R, Bowsher CG, Esposito S, Kosar-Hashemi B, Morell MK, Emes MJ. Protein phosphorylation in amyloplasts regulates starch branching enzyme activity and protein-protein interactions. Plant Cell 16: 694-708 (2004).
Vikso-Nielsen A, Blennow A, Hamborg Nielsen T, Lindberg Moller B. Phosphorylated alpha(1-->4)glucans as substrate for potato starch-branching enzyme I. Plant Physiol. 117: 869-875 (1998).
Wattebled F, Dong Y, Dumez S, Delvalle D, Planchot V, Berbezy P, Vyas D, Colonna P, Chatterjee M, Ball S, D'Hulst C. Mutants of Arabidopsis lacking a chloroplastic isoamylase accumulate phytoglycogen and an abnormal form of amylopectin. Plant Physiol. 138: 184-195 (2005).
Wong PF, Abubakar S. Post-germination changes in Hevea brasiliensis seeds proteome. Plant Sci. 169: 303-311 (2005).
Yamakawa H, Hirose T, Kuroda M, Yamaguchi T. Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Plant Physiol. 144: 258-277 (2007).
Yang J, Zhang J, Wang Z, Xu G, Zhu Q. Activities of key enzymes in sucrose-to-starch conversion in wheat grains subjected to water deficit during grain filling. Plant Physiol. 135: 1621-1629 (2004).
Yao Y, Thompson DB, Guiltinan MJ. Maize starch-branching enzyme isoforms and amylopectin structure. In the absence of starch-branching enzyme IIb, the further absence of starch-branching enzyme Ia leads to increased branching. Plant Physiol. 136: 3515-3523 (2004).
Yu Y, Mu HH, Mu-Forster C, Wasserman BP. Polypeptides of the maize amyloplast stroma. Stromal localization of starch-biosynthetic enzymes and identification of an 81-kilodalton amyloplast stromal heat-shock cognate. Plant Physiol. 116: 1451-1460 (1998).
Yu Y, Mu HH, Wasserman BP, Carman GM. Identification of the maize amyloplast stromal 112-kD protein as a plastidic starch phosphorylase. Plant Physiol. 125: 351-359 (2001).
Zeeman SC, Smith SM, Smith AM. The diurnal metabolism of leaf starch. Biochem. J. 401: 13-28 (2007).
Zeeman SC, Umemoto T, Lue WL, Au-Yeung P, Martin C, Smith AM, Chen J. A mutant of Arabidopsis lacking a chloroplastic isoamylase accumulates both starch and phytoglycogen. Plant Cell 10: 1699-1712 (1998).
Zhu ZP, Hylton CM, Rossner U, Smith AM. Characterization of starch-debranching enzymes in pea embryos. Plant Physiol. 118: 581-590 (1998).
Number of references = 67
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