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HORT640 - Metabolic Plant Physiology
References, serine decarboxylase
Alexander FW, Sandmeier E, Mehta PK, Christen P. Evolutionary relationships among pyridoxal-5'-phosphate-dependent enzymes. Regio-specific alpha, beta and gamma families. Eur. J. Biochem. 219: 953-960 (1994).
Bagard M, Le Thiec D, Delacote E, Hasenfratz-Sauder MP, Banvoy J, Gerard J, Dizengremel P, Jolivet Y. Ozone-induced changes in photosynthesis and photorespiration of hybrid poplar in relation to the developmental stage of the leaves. Physiol. Plant. 134: 559-574 (2008).
Bauwe H, Kolukisaoglu U. Genetic manipulation of glycine decarboxylation. J. Exp. Bot. 54: 1523-1535 (2003).
Besson V, Rebeille F, Neuburger M, Douce R, Cossins EA. Effects of tetrahydrofolate polyglutamates on the kinetic parameters of serine hydroxymethyltransferase and glycine decarboxylase from pea leaf mitochondria. Biochem. J. 292: 425-430 (1993).
Beudeker RF, Tabita FR. Control of photorespiratory glycolate metabolism in an oxygen-resistant mutant of Chlorella sorokiniana. J. Bacteriol. 155: 650-656 (1983).
Bhuiyan NH, Hamada A, Yamada N, Rai V, Hibino T, Takabe T. Regulation of betaine synthesis by precursor supply and choline monooxygenase expression in Amaranthus tricolor. J. Exp. Bot. 58: 4203-4212 (2007).
Contestabile R, Paiardini A, Pascarella S, di Salvo ML, D'Aguanno S, Bossa F. L-Threonine aldolase, serine hydroxymethyltransferase and fungal alanine racemase. A subgroup of strictly related enzymes specialized for different functions. Eur. J. Biochem. 268: 6508-6525 (2001).
Cremer J, Treptow C, Eggeling L, Sahm H. Regulation of enzymes of lysine biosynthesis in Corynebacterium glutamicum. J. Gen. Microbiol. 134: 3221-3229 (1988).
Devi MT, Rajagopalan AV, Raghavendra AS. Predominant localization of mitochondria enriched with glycine decarboxylating enzymes in bundle-sheath cells of Alternanthera tenella, a C3-C4 intermediate species. Plant Cell Environ. 18: 589-594 (1995).
Douce R, Bourguignon J, Neuburger M, Rebeille F. The glycine decarboxylase system: a fascinating complex. Trends Plant Sci. 6: 167-176 (2001).
Eisenhut M, Kahlon S, Hasse D, Ewald R, Lieman-Hurwitz J, Ogawa T, Ruth W, Bauwe H, Kaplan A, Hagemann M. The plant-like C2 glycolate pathway and the bacterial-like glycerate cycle cooperate in phosphoglycolate metabolism in cyanobacteria. Plant Physiol. 142: 333-342 (2006).
Fujimori K, Ohta D. Heavy metal induction of Arabidopsis serine decarboxylase gene expression. Biosci. Biotechnol. Biochem. 67: 896-898 (2003).
Giles TN, Graham DE. Crenarchaeal arginine decarboxylase evolved from an S-adenosylmethionine decarboxylase enzyme. J. Biol. Chem. 283: 25829-25838 (2008).
Hartung W, Ratcliffe RG. Utilization of glycine and serine as nitrogen sources in the roots of Zea mays and Chamaegigas intrepidus. J. Exp. Bot. 53: 2305-2314 (2002).
Ho CL, Saito K. Molecular biology of the plastidic phosphorylated serine biosynthetic pathway in Arabidopsis thaliana. Amino Acids 20: 243-259 (2001).
Igamberdiev AU, Bykova NV, Kleczkowski LA. Origins and metabolism of formate in higher plants. Plant Physiol. Biochem. 37: 503-513 (1999).
Lee YS, Cho YD. Identification of essential active-site residues in ornithine decarboxylase of Nicotiana glutinosa decarboxylating both L-ornithine and L-lysine. Biochem. J. 360: 657-665 (2001).
Li R, Moore M, King J. Investigating the regulation of one-carbon metabolism in Arabidopsis thaliana. Plant Cell Physiol. 44: 233-241 (2003).
Man HM, Kaiser WM. Increased glutamine synthetase activity and changes in amino acid pools in leaves treated with 5-aminoimidazole-4-carboxiamide ribonucleoside (AICAR). Physiol. Plant. 111: 291-296 (2001).
Mouillon JM, Aubert S, Bourguignon J, Gout E, Douce R, Rebeille F. Glycine and serine catabolism in non-photosynthetic higher plant cells: their role in C1 metabolism. Plant J. 20: 197-205 (1999).
Nerlich A, von Orlow M, Rontein D, Hanson AD, Dormann P. Deficiency in phosphatidylserine decarboxylase activity in the psd1 psd2 psd3 triple mutant of Arabidopsis affects phosphatidylethanolamine accumulation in mitochondria. Plant Physiol. 144: 904-914 (2007).
Nijhout HF, Gregory JF, Fitzpatrick C, Cho E, Lamers KY, Ulrich CM, Reed MC. A mathematical model gives insights into the effects of vitamin B-6 deficiency on 1-carbon and glutathione metabolism. J. Nutr. 139: 784-791 (2009).
Novitskaya L, Trevanion SJ, Driscoll S, Foyer CH, Noctor G. How does photorespiration modulate leaf amino acid contents? A dual approach through modelling and metabolite analysis. Plant Cell Environ. 25: 821-835 (2002).
Ogur M, Liu TN, Cheung I, Paulavicius I, Wales W, Mehnert D, Blaise D. "Active" one-carbon generation in Saccharomyces cerevisiae. J. Bacteriol. 129: 926-933 (1977).
Oliver DJ, Raman R. Glycine decarboxylase: protein chemistry and molecular biology of the major protein in leaf mitochondria. J. Bioenerg. Biomembr. 27: 407-414 (1995).
Pascarella S, Schirch V, Bossa F. Similarity between serine hydroxymethyltransferase and other pyridoxal phosphate-dependent enzymes. FEBS Lett. 331: 145-149 (1993).
Pascarella S, Schirch V, Bossa F. Similarity between serine hydroxymethyltransferase and other pyridoxal phosphate-dependent enzymes. FEBS Lett. 331: 145-149 (1993).
Piper MD, Hong SP, Ball GE, Dawes IW. Regulation of the balance of one-carbon metabolism in Saccharomyces cerevisiae. J. Biol. Chem. 275: 30987-30995 (2000).
Prabhu V, Chatson KB, Abrams GD, King J. 13C nuclear magnetic resonance detection of interactions of serine hydroxymethyltransferase with C1-tetrahydrofolate synthase and glycine decarboxylase complex activities in Arabidopsis. Plant Physiol. 112: 207-216 (1996).
Prabhu V, Chatson KB, Lui H, Abrams GD, King J. Effects of sulfanilamide and methotrexate on 13C fluxes through the glycine decarboxylase/serine hydroxymethyltransferase enzyme system in Arabidopsis. Plant Physiol. 116: 137-144 (1998).
Ramjee MK, Genschel U, Abell C, Smith AG. Escherichia coli L-aspartate-alpha-decarboxylase: preprotein processing and observation of reaction intermediates by electrospray mass spectrometry. Biochem. J. 323: 661-669 (1997).
Riekhof WR, Voelker DR. Uptake and utilization of lysophosphatidylethanolamine by Saccharomyces cerevisiae. J. Biol. Chem. 281: 36588-36596 (2006).
Ro HS. Effects of salts on the conformation and catalytic properties of D-amino acid aminotransferase. J. Biochem. Mol. Biol. 35: 306-312 (2002).
Rontein D, Nishida I, Tashiro G, Yoshioka K, Wu WI, Voelker DR, Basset G, Hanson AD. Plants synthesize ethanolamine by direct decarboxylation of serine using a pyridoxal phosphate enzyme. J. Biol. Chem. 276: 35523-35529 (2001).
Rontein D, Rhodes D, Hanson AD. Evidence from engineering that decarboxylation of free serine is the major source of ethanolamine moieties in plants. Plant Cell Physiol. 44: 1185-1191 (2003).
Rontein D, Wu WI, Voelker DR, Hanson AD. Mitochondrial phosphatidylserine decarboxylase from higher plants. Functional complementation in yeast, localization in plants, and overexpression in Arabidopsis. Plant Physiol. 132: 1678-1687 (2003).
Salzmann D, Christen P, Mehta PK, Sandmeier E. Rates of evolution of pyridoxal-5'-phosphate-dependent enzymes. Biochem. Biophys. Res. Commun. 270: 576-580 (2000).
Sinclair DA, Dawes IW. Genetics of the synthesis of serine from glycine and the utilization of glycine as sole nitrogen source by Saccharomyces cerevisiae. Genetics 140: 1213-1222 (1995).
Storey MK, Wu W, Voelker DR. A genetic screen for ethanolamine auxotrophs in Saccharomyces cerevisiae identifies a novel mutation in Mcd4p, a protein implicated in glycosylphosphatidylinositol anchor synthesis. Biochim. Biophys. Acta 1532: 234-247 (2001).
Tolbert WD, Zhang Y, Cottet SE, Bennett EM, Ekstrom JL, Pegg AE, Ealick SE. Mechanism of human S-adenosylmethionine decarboxylase proenzyme processing as revealed by the structure of the S68A mutant. Biochemistry 42: 2386-2395 (2003).
Touze T, Gouesbet G, Boiangiu C, Jebbar M, Bonnassie S, Blanco C. Glycine betaine loses its osmoprotective activity in a bspA strain of Erwinia chrysanthemi. Mol. Microbiol. 42: 87-99 (2001).
Turner SR, Hellens R, Ireland R, Ellis N, Rawsthorne S. The organisation and expression of the genes encoding the mitochondrial glycine decarboxylase complex and serine hydroxymethyltransferase in pea (Pisum sativum). Mol. Gen. Genet. 236: 402-408 (1993).
Voelker DR. New perspectives on the regulation of intermembrane glycerophospholipid traffic. J. Lipid Res. 44: 441-449 (2003).
Voll LM, Jamai A, Renne P, Voll H, McClung CR, Weber AP. The photorespiratory Arabidopsis shm1 mutant is deficient in SHM1. Plant Physiol. 140: 59-66 (2006).
Wingler A, Lea PJ, Leegood RC. Photorespiratory metabolism of glyoxylate and formate in glycine-accumulating mutants of barley and Amaranthus edulis. Planta 207: 518-526 (1999).
Wingler A, Quick WP, Bungard RA, Bailey KJ, Lea PJ, Leegood RC. The role of photorespiration during drought stress: an analysis utilizing barley mutants with reduced activities of photorespiratory enzymes. Plant Cell Environ. 22: 361-373 (1999).
Zhang Q, Wiskich JT. Activation of glycine decarboxylase in pea leaf mitochondria by ATP. Arch. Biochem. Biophys. 320: 250-256 (1995).
Number of references = 47
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