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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, proteomics

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Cui S, Huang F, Wang J, Ma X, Cheng Y, Liu J. A proteomic analysis of cold stress responses in rice seedlings. Proteomics 5: 3162-3172 (2005).

Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Staerfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thøgersen IB, Enghild JJ, Stougaard J. The proteome of seed development in the model legume Lotus japonicus. Plant Physiol. 149: 1325-1340 (2009).

Datta SK. Recent developments in transgenics for abiotic stress tolerance in rice. JIRCAS Working Report No.23, "Genetic Engineering of Crop Plants for Abiotic Stress" (Iwanaga M, ed.) p. 43-53 (2002).

Davies AR, Belsey MJ, Kozlowski RZ. Volume-sensitive organic osmolyte/anion channels in cancer: novel approaches to studying channel modulation employing proteomics technologies. Ann. N. Y. Acad. Sci. 1028: 38-55 (2004).

Davis CD, Hord NG. Nutritional "omics" technologies for elucidating the role(s) of bioactive food components in colon cancer prevention. J. Nutr. 135: 2694-2697 (2005).

de la Fuente A, Bing N, Hoeschele I, Mendes P. Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 20: 3565-3574 (2004).

de la Fuente van Bentem S, Hirt H. Using phosphoproteomics to reveal signalling dynamics in plants. Trends Plant Sci. 12: 404-411 (2007).

de la Fuente van Bentem S, Roitinger E, Anrather D, Csaszar E, Hirt H. Phosphoproteomics as a tool to unravel plant regulatory mechanisms. Physiol. Plant. 126: 110-119 (2006).

De Luca V, Laflamme P. The expanding universe of alkaloid biosynthesis. Curr. Opin. Plant Biol. 4: 225-233 (2001).

de Vienne D, Bost B, Fievet J, Zivy M, Dillmann C. Genetic variability of proteome expression and metabolic control. Plant Physiol. & Biochem. 39: 271-283 (2001).

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Desbrosses GG, Kopka J, Udvardi MK. Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiol. 137: 1302-1318 (2005).

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Dreger M. Emerging strategies in mass-spectrometry based proteomics. Eur. J. Biochem. 270: 569 (2003).

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El-Bayoumy K, Sinha R. Molecular chemoprevention by selenium: a genomic approach. Mutat. Res. 591: 224-236 (2005).

Ensminger I, Busch F, Huner NPA. Photostasis and cold acclimation: sensing low temperature through photosynthesis. Physiol. Plant. 126: 28-44 (2006).

Eom SJ, Ahn HJ, Kim HW, Baek SH, Suh SW. Crystallization and preliminary X-ray crystallographic studies of phosphopantetheine adenylyltransferase from Helicobacter pylori. Acta Crystallogr. D. Biol. Crystallogr. 59: 561-562 (2003).

Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH. Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiol. 148: 1809-1829 (2008).

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Kersten B, Burkle L, Kuhn EJ, Giavalisco P, Konthur Z, Lueking A, Walter G, Eickhoff H, Schneider U. Large-scale plant proteomics. Plant Mol. Biol. 48: 133-141 (2002).

Kharbanda KK, Vigneswara V, McVicker BL, Newlaczyl AU, Bailey K, Tuma D, Ray DE, Carter WG. Proteomics reveal a concerted upregulation of methionine metabolic pathway enzymes, and downregulation of carbonic anhydrase-III, in betaine supplemented ethanol-fed rats. Biochem. Biophys. Res. Commun. 381: 523-527 (2009).

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Kim JK, Bamba T, Harada K, Fukusaki E, Kobayashi A. Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. J. Exp. Bot. 58: 415-424 (2007).

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Koeduka T, Baiga TJ, Noel JP, Pichersky E. Biosynthesis of t-anethole in anise: characterization of t-anol/isoeugenol synthase and a O-methyltransferase specific for a C7-C8 propenyl side chain. Plant Physiol. 149: 384-394 (2009).

Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y. Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins. Proteomics 5: 3932-3941 (2005).

Komatsu S, Konishi H, Hashimoto M. The proteomics of plant cell membranes. J. Exp. Bot. 58: 103-112 (2007).

Komatsu S, Tanaka N. Rice proteome analysis: a step toward functional analysis of the rice genome. Proteomics 5: 938-949 (2005).

Konishi H, Kitano H, Komatsu S. Identification of rice root proteins regulated by gibberellin using proteome analysis. Plant Cell Environ. 28: 328-339 (2005).

Kottapalli KR, Rakwal R, Shibato J, Burow G, Tissue D, Burke J, Puppala N, Burow M, Payton P. Physiology and proteomics of the water-deficit stress response in three contrasting peanut genotypes. Plant Cell Environ. 32: 380-407 (2009).

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David Rhodes
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Last Update: 10/01/09