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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, photorespiration or photorespiratory

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Arrivault S, Guenther M, Ivakov A, Feil R, Vosloh D, van Dongen JT, Sulpice R, Stitt M. Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant J. 59: 826-839 (2009).

Atkin OK, Evans JR, Ball MC, Lambers H, Pons TL. Leaf respiration of snow gum in the light and dark. Interactions between temperature and irradiance. Plant Physiol. 122: 915-924 (2000).

Avila C, Marquez AJ, Pajuelo P, Cannell ME, Wallsgrove RM, Forde BG. Cloning and sequence analysis of a cDNA for barley ferredoxin-dependent glutamate synthase and molecular analysis of photorespiratory mutants deficient in the enzyme. Planta 189: 475-483 (1993).

Bagard M, Le Thiec D, Delacote E, Hasenfratz-Sauder MP, Banvoy J, Gerard J, Dizengremel P, Jolivet Y. Ozone-induced changes in photosynthesis and photorespiration of hybrid poplar in relation to the developmental stage of the leaves. Physiol. Plant. 134: 559-574 (2008).

Bailey KJ, Battistelli A, Dever LV, Lea PJ, Leegood RC. Control of C4 photosynthesis: effects of reduced activities of phosphoenolpyruvate carboxylase on CO2 assimilation in Amaranthus edulis L. J. Exp. Bot. 51: 339-346 (2000).

Baldy P. Corn phosphoglycolate phosphatase: immunodetection in Kranz cells. J. Plant Physiol. 141: 633-635 (1993).

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Bari R, Kebeish R, Kalamajka R, Rademacher T, Peterhansel C. A glycolate dehydrogenase in the mitochondria of Arabidopsis thaliana. J. Exp. Bot. 55: 623-630 (2004).

Bauwe H, Kolukisaoglu U. Genetic manipulation of glycine decarboxylation. J. Exp. Bot. 54: 1523-1535 (2003).

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Beckmann K, Dzuibany C, Biehler K, Fock H, Hell R, Migge A, Becker TW. Photosynthesis and fluorescence quenching, and the mRNA levels of plastidic GS or of mitochondrial SHMT in the leaves of the wild-type and of the SHMT-deficient stm mutant of Arabidopsis thaliana in relation to the rate of photorespiration. Planta 202: 379-386 (1997).

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Bergman B. Photorespiratory ammonium release by the cyanobacterium Anabaena cylindrica in the presence of methionine sulfoximine. Arch. Microbiol. 137: 21-25 (1984).

Berlyn MB. A mutational approach to the study of photorespiration. Basic Life Sci. 11: 153-164 (1978).

Besson V, Rebeille F, Neuburger M, Douce R, Cossins EA. Effects of tetrahydrofolate polyglutamates on the kinetic parameters of serine hydroxymethyltransferase and glycine decarboxylase from pea leaf mitochondria. Biochem. J. 292: 425-430 (1993).

Betsche T, Eising R. Refixation of photorespiratory ammonia and the role of alanine in photorespiration: Studies with 15N. Plant & Soil 91: 367-371 (1986).

Betti M, Arcondeguy T, Marquez AJ. Molecular analysis of two mutants from Lotus japonicus deficient in plastidic glutamine synthetase: functional properties of purified GLN2 enzymes. Planta 224: 1068-1079 (2006).

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Bhatti S, Colman B. Inorganic carbon acquisition in some synurophyte algae. Physiol. Plant. 133: 33-40 (2008).

Boldt R, Edner C, Kolukisaoglu U, Hagemann M, Weckwerth W, Wienkoop S, Morgenthal K, Bauwe H. D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17: 2413-2420 (2005).

Borland AM, Tecsi LI, Leegood RC, Walker RP. Inducibility of Crassulacean acid metabolism (CAM) in Clusia species; physiological/biochemical characterisation and intercellular localization of carboxylation and decarboxylation processes in three species which exhibit different degrees of CAM. Planta 205: 342-351 (1998).

Bourguignon J, Macherel D, Neuburger M, Douce R. Isolation, characterization, and sequence analysis of a cDNA clone encoding L-protein, the dihydrolipoamide dehydrogenase component of the glycine cleavage system from pea-leaf mitochondria. Eur. J. Biochem. 204: 865-873 (1992).

Bozzo GG, Colman B, Matsuda Y. Active transport of CO2 and bicarbonate is induced in response to external CO(2) concentration in the green alga Chlorella kessleri. J. Exp. Bot. 51: 1341-1348 (2000).

Branden CI, Lindqvist Y, Schneider G. Protein engineering of Rubisco. Acta Crystallogr. B. 47: 824-835 (1991).

Branden CI, Schneider G, Lindqvist Y, Andersson I, Knight S, Lorimer G. Structural and evolutionary aspects of the key enzymes in photorespiration RuBisCO and glycolate oxidase. Cold Spring Harb. Symp. Quant. Biol. 52: 491-498 (1987).

Branden R, Nilsson T, Styring S, Angstrom J. L-3-phosphoglyceric acid, formed by ribulose-1,5-bisphosphate carboxylase, is the primary substrate for photorespiration: experimental test of a hypothesis. Biochem. Biophys. Res. Commun. 92: 1306-1312 (1980).

Brisson LF, Zelitch I, Havir EA. Manipulation of catalase levels produces altered photosynthesis in transgenic tobacco plants. Plant Physiol. 116: 259-269 (1998).

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Bykova NV, Keerberg O, Parnik T, Bauwe H, Gardestrom P. Interaction between photorespiration and respiration in transgenic potato plants with antisense reduction in glycine decarboxylase. Planta 222: 130-140 (2005).

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Canton FR, Suarez MF, Canovas FM. Molecular aspects of nitrogen mobilization and recycling in trees. Photosynth. Res. 83: 265-278 (2005).

Carmo-Silva AE, Powers SJ, Keys AJ, Arrabaca MC, Parry MA. Photorespiration in C4 grasses remains slow under drought conditions. Plant Cell Environ. 31: 925-940 (2008).

Castro AJ, Carapito C, Zorn N, Magne C, Leize E, Van Dorsselaer A, Clement C. Proteomic analysis of grapevine (Vitis vinifera L.) tissues subjected to herbicide stress. J. Exp. Bot. 56: 2783-2795 (2005).

Cegelski L, Schaefer J. Glycine metabolism in intact leaves by in vivo 13C and 15N labeling. J. Biol. Chem. 280: 39238-39245 (2005).

Cegelski L, Schaefer J. NMR determination of photorespiration in intact leaves using in vivo 13CO2 labeling. J. Magn. Reson. 178: 1-10 (2006).

Chen LS, Qi YP, Smith BR, Liu XH. Aluminum-induced decrease in CO2 assimilation in citrus seedlings is unaccompanied by decreased activities of key enzymes involved in CO2 assimilation. Tree Physiol. 25: 317-324 (2005).

Chen Q, Silflow CD. Isolation and characterization of glutamine synthetase genes in Chlamydomonas reinhardtii. Plant Physiol. 112: 987-996 (1996).

Chen ZY, Burow MD, Mason CB, Moroney JV. A low-CO2-inducible gene encoding an alanine: alpha-ketoglutarate aminotransferase in Chlamydomonas reinhardtii. Plant Physiol. 112: 677-684 (1996).

Cheng L, Fuchigami LH, Breen PJ. The relationship between photosystem II efficiency and quantum yield for CO2 assimilation is not affected by nitrogen content in apple leaves. J. Exp. Bot. 52: 1865-1872 (2001).

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Collakova E, Goyer A, Naponelli V, Krassovskaya I, Gregory JF 3rd, Hanson AD, Shachar-Hill Y. Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration. Plant Cell 20: 1818-1832 (2008).

Collins N, Merrett MJ. The localization of glycollate-pathway enzymes in Euglena. Biochem. J. 148: 321-328 (1975).

Cornah JE, Germain V, Ward JL, Beale MH, Smith SM. Lipid utilization, gluconeogenesis and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase. J. Biol. Chem. 279: 42916-42923 (2004).

Cornic G, Fresneau C. Photosynthetic carbon reduction and carbon oxidation cycles are the main electron sinks for photosystem II activity during a mild drought. Ann. Bot. (Lond.) 89: 887-894 (2002).

Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM. Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation. Plant Cell 10: 741-752 (1998).

Cousins AB, Bloom AJ. Oxygen consumption during leaf nitrate assimilation in a C-3 and C-4 plant: the role of mitochondrial respiration. Plant Cell Environ. 27: 1537-1545 (2004).

Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR. Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release. Plant Physiol. 148: 786-795 (2008).

Crafts-Brandner SJ, Law RD. Effect of heat stress on the inhibition and recovery of the ribulose-1,5-bisphosphate carboxylase/oxygenase activation state. Planta 212: 67-74 (2000).

Cramer GR, Ergul A, Grimplet J, Tillett RL, Tattersall EA, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D, Schlauch KA, Schooley DA, Cushman JC. Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Funct. Integr. Genomics 7: 111-134 (2007).

D'Apuzzo E, Rogato A, Simon-Rosin U, El Alaoui H, Barbulova A, Betti M, Dimou M, Katinakis P, Marquez A, Marini AM, Udvardi MK, Chiurazzi M. Characterization of three functional high-affinity ammonium transporters in Lotus japonicus with differential transcriptional regulation and spatial expression. Plant Physiol. 134: 1763-1774 (2004).

Dai Z, Ku M, Edwards GE. C4 photosynthesis. The CO2-concentrating mechanism and photorespiration. Plant Physiol. 103: 83-90 (1993).

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Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF, Halpin C, Messens E, Boerjan W. Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant J. 52: 263-285 (2007).

DellaPenna D. Plant metabolic engineering. Plant Physiol. 125: 160-163 (2001).

Dever LV, Bailey KJ, Lacuesta M, Leegood RC, Lea PJ. The isolation and characterization of mutants of the C4 plant Amaranthus edulis. Comptes Rendus Acad. Sci. Ser. III-Sci. Vie-Life Sci. 319: 951-959 (1996).

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Devi MT, Raghavendra AS. Formation of photorespiratory glycolate and glyoxylate in leaf disks of C3-C4 intermediates: reduced sensitivity to external bicarbonate. Photosynthetica 30: 455-463 (1994).

Devi MT, Raghavendra AS. Partial reduction in activities of photorespiratory enzymes in C3-C4 intermediates of Alternanthera and Parthenium. J. Exp. Bot. 44: 779-784 (1993).

Devi MT, Raghavendra AS. Photorespiration in C3-C4, intermediate species of Alternanthera and Parthenium: reduced ammonia production and increased capacity CO2 refixation in the light. Photosynth. Res. 38: 177-184 (1993).

Devi MT, Rajagopalan AV, Raghavendra AS. Predominant localization of mitochondria enriched with glycine decarboxylating enzymes in bundle-sheath cells of Alternanthera tenella, a C3-C4 intermediate species. Plant Cell Environ. 18: 589-594 (1995).

Devi MT, Rajagopalan AV, Raghavendra AS. Purification and properties of glycolate oxidase from plants with different photosynthetic pathways: Distinctness of C-4 enzyme from that of a C-3 species and a C-3-C-4 intermediate. Photosynth. Res. 47: 231-238 (1996).

Dhar P, Wang E, Nakayama Y, Tomita M. Modeling photorespiration pathway through E-Cell. Genome Informatics 12: 306-307 (2001).

Douce R, Bourguignon J, Neuburger M, Rebeille F. The glycine decarboxylase system: a fascinating complex. Trends Plant Sci. 6: 167-176 (2001).

Douce R, Neuburger M. Biochemical dissection of photorespiration. Curr. Opin. Plant Biol. 2: 214-222 (1999).

Dry IB, Dimitriadis E, Ward AD, Wiskich JT. The photorespiratory hydrogen shuttle. Synthesis of phthalonic acid and its use in the characterization of the malate/aspartate shuttle in pea (Pisum sativum) leaf mitochondria. Biochem. J. 245: 669-675 (1987).

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Eckardt NA. Photorespiration revisited. Plant Cell 17: 2139-2141 (2005).

Edwards GE, Franceschi VR, Voznesenskaya EV. Single-cell C4 photosynthesis versus the dual-cell (Kranz) paradigm. Annu. Rev. Plant Biol. 55: 173-196 (2004).

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Eisenhut M, Ruth W, Haimovich M, Bauwe H, Kaplan A, Hagemann M. The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc. Natl. Acad. Sci. U.S.A. 105: 17199-17204 (2008).

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Hanson KR, Peterson RB. Photorespiration stoichiometry in leaves estimated by combined physical and stereochemical methods: allowance for isomerase-catalyzed 3H losses in ribulose bisphosphate regeneration. Arch. Biochem. Biophys. 252: 591-605 (1987).

Hanson KR, Peterson RB. Regulation of photorespiration in leaves: evidence that the fraction of ribulose bisphosphate oxygenated is conserved and stoichiometry fluctuates. Arch. Biochem. Biophys. 246: 332-346 (1986).

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Harrison-Lowe N, Olsen LJ. Isolation of glyoxysomes from pumpkin cotyledons. Curr. Protoc. Cell Biol. Chapter 3: Unit 3.19 (2006).

Haupt-Herting S, Fock HP. Oxygen exchange in relation to carbon assimilation in water-stressed leaves during photosynthesis. Ann. Bot. (Lond.) 89: 851-859 (2002).

Haupt-Herting S, Klug K, Fock HP. A new approach to measure gross CO2 fluxes in leaves. Gross CO2 assimilation, photorespiration, and mitochondrial respiration in the light in tomato under drought stress. Plant Physiol. 126: 388-396 (2001).

Hausler RE, Bailey KJ, Lea PJ, Leegood RC. Control of photosynthesis in barley mutants with reduced activities of glutamine synthetase and glutamate synthase. 3. Aspects of glyoxylate metabolism and effects of glyoxylate on the activation state of ribulose-1,5-bisphosphate carboxylase/oxygenase. Planta 200: 388-396 (1996).

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Hausler RE, Lea PJ, Leegood RC. Control of photosynthesis in barley leaves with reduced activities of glutamine synthetase or glutamate synthase. 2. Control of electron transport and CO2 assimilation. Planta 194: 418-435 (1994).

Hausler RE, Rademacher T, Li J, Lipka V, Fischer KL, Schubert S, Kreuzaler F, Hirsch HJ. Single and double overexpression of C4-cycle genes had differential effects on the pattern of endogenous enzymes, attenuation of photorespiration and on contents of UV protectants in transgenic potato and tobacco plants. J. Exp. Bot. 52: 1785-1803 (2001).

Hayashi M, Nishimura M. Entering a new era of research on plant peroxisomes. Curr. Opin. Plant Biol. 6: 577-582 (2003).

He DX, Edwards GE. Estimation of diffusive resistance of bundle sheath cells to CO2 from modeling of C-4 photosynthesis. Photosynth. Res. 49: 195-208 (1996).

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