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Nitrate Assimilation
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Glu, Gln, Asn, Gly, Ser
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Val, Leu, Ileu, Thr, Lys
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HORT640 - Metabolic Plant Physiology

References, phosphofructokinase

Abe K, Higuchi T. Selective fermentation of xylose by a mutant of Tetragenococcus halophila defective in phosphoenolpyruvate:mannose phosphotransferase, phosphofructokinase, and glucokinase. Biosci. Biotechnol. Biochem. 62: 2062-2064 (1998).

Bakker BM, Michels PAM, Opperdoes FR, Westerhoff HV. Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes. J. Biol. Chem. 272: 3207-3215 (1997).

Banzai T, Hanagata N, Dubinsky Z, Karube I. Fructose-2,6-bisphosphate contents were increased in response to salt, water and osmotic stress in leaves of Bruguiera gymnorrhiza by differential changes in the activity of the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphate … Plant Mol. Biol. 53: 51-59 (2003).

Baud S, Graham IA. A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry. Plant J. 46: 155-169 (2006).

Bazan JF, Fletterick RJ, Pilkis SJ. Evolution of a bifunctional enzyme: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Proc. Natl. Acad. Sci. U.S.A. 86: 9642-9646 (1989).

Bertrand L, Vertommen D, Depiereux E, Hue L, Rider MH, Feytmans E. Modelling the 2-kinase domain of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase on adenylate kinase. Biochem. J. 321: 615-621 (1997).

Boles E, Gohlmann HW, Zimmermann FK. Cloning of a second gene encoding 5-phosphofructo-2-kinase in yeast, and characterization of mutant strains without fructose-2,6-bisphosphate. Mol. Microbiol. 20: 65-76 (1996).

Borodina I, Siebring J, Zhang J, Smith CP, van Keulen G, Dijkhuizen L, Nielsen J. Antibiotic overproduction in Streptomyces coelicolor A3(2) mediated by phosphofructokinase deletion. J. Biol. Chem. 283: 25186-25199 (2008).

Botha AM, Botha FC. Induction of pyrophosphate-dependent phosphofructokinase in watermelon (Citrullus lanatus) cotyledons coincides with insufficient cytosolic D-fructose-1,6-bisphosphate 1-phosphohydrolase to sustain gluconeogenesis. Plant Physiol. 101: 1385-1390 (1993).

Bourgis F, Botha FC, Mani S, Hiten FN, Rigden DJ, Verbruggen N. Characterization and functional investigation of an Arabidopsis cDNA encoding a homologue to the d-PGMase superfamily. J. Exp. Bot. 56: 1129-1142 (2005).

Bozzo GG, Dunn EL, Plaxton WC. Differential synthesis of phosphate-starvation inducible purple acid phosphatase isozymes in tomato (Lycopersicon esculentum) suspension cells and seedlings. Plant Cell Environ. 29: 303-313 (2006).

Caniuguir A, Cabrera R, Baez M, Vasquez CC, Babul J, Guixe V. Role of Cys-295 on subunit interactions and allosteric regulation of phosphofructokinase-2 from Escherichia coli. FEBS Lett. 579: 2313-2318 (2005).

Carpenter JF, Martin B, Crowe LM, Crowe JH. Stabilization of phosphofructokinase during air-drying with sugars and sugar/transition metal mixtures. Cryobiology 24: 455-464 (1987).

Carswell MC, Grant BR, Plaxton WC. Disruption of the phosphate-starvation response of oilseed rape suspension cells by the fungicide phosphonate. Planta 203: 67-74 (1997).

Chen LS, Nose A. Day-night changes of energy-rich compounds in crassulacean acid metabolism (CAM) species utilizing hexose and starch. Ann. Bot. (Lond.) 94: 449-455 (2004).

Chen R, Yap WM, Postma PW, Bailey JE. Comparative studies of Escherichia coli strains using different glucose uptake systems: metabolism and energetics. Biotechnol. Bioeng. 56: 583-590 (1997).

Choi IY, Wu C, Okar DA, Lange AJ, Gruetter R. Elucidation of the role of fructose 2,6-bisphosphate in the regulation of glucose fluxes in mice using in vivo (13)C NMR measurements of hepatic carbohydrate metabolism. Eur. J. Biochem. 269: 4418-4426 (2002).

Costa Dos Santos A, Seixas Da-Silva W, De Meis L, Galina A. Proton transport in maize tonoplasts supported by fructose-1,6-bisphosphate cleavage. Pyrophosphate-dependent phosphofructokinase as a pyrophosphate-regenerating system. Plant Physiol. 133: 885-892 (2003).

Curioni PM, Hartwig UA, Nosberger J, Schuller KA. Glycolytic flux is adjusted to nitrogenase activity in nodules of detopped and argon-treated alfalfa plants. Plant Physiol. 119: 445-454 (1999).

Davies SE, Brindle KM. Effects of overexpression of phosphofructokinase on glycolysis in the yeast Saccharomyces cerevisiae. Biochemistry 31: 4729-4735 (1992).

Dupriez VJ, Rousseau GG. Glucose response elements in a gene that codes for 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. DNA Cell Biol. 16: 1075-1085 (1997).

Durante P, Gueuning MA, Darville MI, Hue L, Rousseau GG. Apoptosis induced by growth factor withdrawal in fibroblasts overproducing fructose 2,6-bisphosphate. FEBS Lett. 448: 239-243 (1999).

Emmerling M, Bailey JE, Sauer U. Glucose catabolism of Escherichia coli strains with increased activity and altered regulation of key glycolytic enzymes. Metab. Eng. 1: 117-127 (1999).

Emmerling M, Bailey JE, Sauer U. Altered regulation of pyruvate kinase or co-overexpression of phosphofructokinase increases glycolytic fluxes in resting Escherichia coli. Biotechnol. Bioeng. 67: 623-627 (2000).

Essmann J, Schmitz-Thom I, Schon H, Sonnewald S, Weis E, Scharte J. RNAi-mediated repression of cell wall invertase impairs defense in source leaves of tobacco. Plant Physiol. 147: 1288-1299 (2008).

Fernie AR, Roscher A, Ratcliffe RG, Kruger NJ. Fructose 2,6-bisphosphate activates pyrophosphate: fructose-6-phosphate 1-phosphotransferase and increases triose phosphate to hexose phosphate cycling in heterotrophic cells. Planta 212: 250-263 (2001).

Fernie AR, Roscher A, Ratcliffe RG, Kruger NJ. Activation of pyrophosphate:fructose-6-phosphate 1-phosphotransferase by fructose 2,6-bisphosphate stimulates conversion of hexose phosphates to triose phosphates but does not influence accumulation of carbohydrates in phosphate-deficient tobacco cells. Physiol. Plant. 114: 172-181 (2002).

Florchinger M, Zimmermann M, Traub M, Neuhaus HE, Mohlmann T. Adenosine stimulates anabolic metabolism in developing castor bean (Ricinus communis L.) cotyledons. Planta 223: 340-348 (2006).

Focks N, Benning C. wrinkled1: A novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol. 118: 91-101 (1998).

Garel JR, Martel A, Muller K, Ikai A, Morishima N, Sutoh K. Role of subunit interactions in the self-assembly of oligomeric proteins. Adv. Biophys. 18: 91-113 (1984).

Givan CV. Evolving concepts in plant glycolysis: two centuries of progress. Biol. Rev. Camb. Phil. Soc. 74: 277-309 (1999).

Glass-Marmor L, Beitner R. Taxol (paclitaxel) induces a detachment of phosphofructokinase from cytoskeleton of melanoma cells and decreases the levels of glucose 1,6-bisphosphate, fructose 1,6-bisphosphate and ATP. Eur. J. Pharmacol. 370: 195-199 (1999).

Goel A, Lee J, Domach MM, Ataai MM. Metabolic fluxes, pools, and enzyme measurements suggest a tighter coupling of energetics and biosynthetic reactions associated with reduced pyruvate kinase flux. Biotechnol. Bioeng. 64: 129-134 (1999).

Gunnarsson N, Bruheim P, Nielsen J. Glucose metabolism in the antibiotic producing actinomycete Nonomuraea sp. ATCC 39727. Biotechnol. Bioeng. 88: 652-663 (2004).

Harthill JE, Meek SE, Morrice N, Peggie MW, Borch J, Wong BH, Mackintosh C. Phosphorylation and 14-3-3 binding of Arabidopsis trehalose-phosphate synthase 5 in response to 2-deoxyglucose. Plant J. 47: 211-223 (2006).

Hasemann CA, Istvan ES, Uyeda K, Deisenhofer J. The crystal structure of the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase reveals distinct domain homologies. Structure 4: 1017-1029 (1996).

Hatzimanikatis V, Emmerling M, Sauer U, Bailey JE. Application of mathematical tools for metabolic design of microbial ethanol production. Biotechnol. Bioeng. 58: 154-161 (1998).

Heinrich R, Rapoport TA. Mathematical analysis of multienzyme systems. II. Steady state and transient control. Biosystems 7: 130-136 (1975).

Hofmann E, Bedri A, Kessler R, Kretschmer M, Schellenberger W. 6-Phosphofructo-2-kinase and fructose-2,6-bisphosphatase from Saccharomyces cerevisiae. Adv. Enzyme Reg. 28: 283-306 (1989).

Hua Q, Joyce AR, Fong SS, Palsson BO. Metabolic analysis of adaptive evolution for in silico designed lactate-producing strains. Biotechnol. Bioeng. 95: 992-1002 (2006).

Jagannatha Rao GS, Cook PF, Harris BG. Kinetic characterization of a T-state of Ascaris suum phosphofructokinase with heterotropic negative cooperativity by ATP eliminated. Arch. Biochem. Biophys. 365: 335-343 (1999).

Jannaschk D, Burgos M, Centerlles JJ, Ovadi J, Cascante M. Application of metabolic control analysis to the study of toxic effects of copper in muscle glycolysis. FEBS Lett. 445: 144-148 (1999).

Kinney AJ. Manipulating flux through plant metabolic pathways. Curr. Opin. Plant Biol. 1: 173-178 (1998).

Kirchberger J, Edelmann A, Kopperschlager G, Heinisch JJ. A single point mutation leads to an instability of the hetero-octameric structure of yeast phosphofructokinase. Biochem. J. 341: 15-23 (1999).

Koebmann B, Solem C, Jensen PR. Control analysis as a tool to understand the formation of the las operon in Lactococcus lactis. FEBS J. 272: 2292-2303 (2005).

Koebmann BJ, Andersen HW, Solem C, Jensen PR. Experimental determination of control of glycolysis in Lactococcus lactis. Antonie Van Leeuwenhoek 82: 237-248 (2002).

Kretschmer M, Langer C, Prinz W. Mutation of monofunctional 6-phosphofructo-2-kinase in yeast to bifunctional 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase. Biochemistry 32: 11143-11148 (1993).

Kuicke J, Mayer F, Kopperschlager G, Kriegel T. Phosphofructokinase-1 from Saccharomyces cerevisiae: analysis of molecular structure and function by electron microscopy and self-catalysed affinity labelling. Int. J. Biol. Macromol. 24: 27-35 (1999).

Kulma A, Villadsen D, Campbell DG, Meek SE, Harthill JE, Nielsen TH, MacKintosh C. Phosphorylation and 14-3-3 binding of Arabidopsis 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Plant J. 37: 654-667 (2004).

Labesse G, Douguet D, Assairi L, Gilles AM. Diacylglyceride kinases, sphingosine kinases and NAD kinases: distant relatives of 6-phosphofructokinases. Trends Biochem. Sci. 27: 273-275 (2002).

Li L, Lin K, Correia JJ, Pilkis SJ. Lysine 356 is a critical residue for binding the C-6 phospho group of fructose 2,6-bisphosphate to the fructose-2,6-bisphosphatase domain of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. J. Biol. Chem. 267: 16669-16675 (1992).

Li L, Ling S, Wu Cl, Yao W, Xu G. Separate bisphosphatase domain of chicken liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase: the role of the C-terminal tail in modulating enzyme activity. Biochem. J. 328: 751-756 (1997).

Liao JC, Lightfoot EN Jr. Extending the quasi-steady state concept to analysis of metabolic networks. J. Theor. Biol. 126: 253-273 (1987).

Lin J, Qian J, Greenbaum D, Bertone P, Das R, Echols N, Senes A, Stenger B, Gerstein M. GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing. Nucleic Acids Res. 30: 4574-4582 (2002).

Lopez C, Chevalier N, Hannaert V, Rigden DJ, Michels PA, Ramirez JL. Leishmania donovani phosphofructokinase. Gene characterization, biochemical properties and structure-modeling studies. Eur. J. Biochem. 269: 3978-3989 (2002).

Markham JE, Kruger NJ. Kinetic properties of bifunctional 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase from spinach leaves. Eur. J. Biochem. 269: 1267-1277 (2002).

Martin SR, Biekofsky RR, Skinner MA, Guerrini R, Salvadori S, Feeney J, Bayley PM. Interaction of calmodulin with the phosphofructokinase target sequence. FEBS Lett. 577: 284-288 (2004).

Messana I, Misiti F, el-Sherbini S, Giardina B, Castagnola M. Quantitative determination of the main glucose metabolic fluxes in human erythrocytes by 13C- and 1H-MR spectroscopy. J. Biochem. Biophys. Methods 39: 63-84 (1999).

Mieskes G, Kuduz J, Soling HD. Are calcium-dependent protein kinases involved in the regulation of glycolytic/gluconeogenetic enzymes? Studies with Ca2+/calmodulin-dependent protein kinase and protein kinase C. Eur. J. Biochem. 167: 383-389 (1987).

Minchenko A, Leshchinsky I, Opentanova I, Sang N, Srinivas V, Armstead V, Caro J. Hypoxia-inducible factor-1-mediated expression of the 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-3 (PFKFB3) gene. Its possible role in the Warburg effect. J. Biol. Chem. 277: 6183-6187 (2002).

Minchenko O, Opentanova I, Minchenko D, Ogura T, Esumi H. Hypoxia induces transcription of 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-4 gene via hypoxia-inducible factor-1alpha activation. FEBS Lett. 576: 14-20 (2004).

Montavon P, Kruger NJ. Essential arginyl residue at the active site of pyrophosphate:fructose 6-phosphate 1-phosphotransferase from potato (Solanum tuberosum) tuber. Plant Physiol. 101: 765-771 (1993).

Moreno-Sanchez R, Encalada R, Marin-Hernandez A, Saavedra E. Experimental validation of metabolic pathway modeling. An illustration with glycotic segments from Entamoeba histolytica. FEBS J. 275: 3454-3469 (2008).

Muller S, Zimmermann FK, Boles E. Mutant studies of phosphofructo-2-kinases do not reveal an essential role of fructose-2,6-bisphosphate in the regulation of carbon fluxes in yeast cells. Microbiology 143: 3055-3061 (1997).

Mulquiney PJ, Kuchel PW. Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: computer simulation and Metabolic Control Analysis. Biochem. J. 342: 597-604 (1999).

Mulquiney PJ, Kuchel PW. Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: equations and parameter refinement. Biochem. J. 342: 581-596 (1999).

Mustroph A, Sonnewald U, Biemelt S. Characterisation of the ATP-dependent phosphofructokinase gene family from Arabidopsis thaliana. FEBS Lett. 581: 2401-2410 (2007).

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Pilkis SJ, Claus TH, Kurland IJ, Lange AJ. 6-Phosphofructo-2-kinase/fructose-2,6-bisphosphatase: a metabolic signaling enzyme. Annu. Rev. Biochem. 64: 799-835 (1995).

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Number of references = 110

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