Abbasi AR, Hajirezaei M, Hofius D, Sonnewald U, Voll LM. Specific roles of alpha- and gamma-tocopherol in abiotic stress responses of transgenic tobacco. Plant Physiol. 143: 1720-1738 (2007).

Abdel-Ghany SE. Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes. Planta 229: 767-779 (2009).

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D. A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48 (2006).

Abuqamar S, Luo H, Laluk K, Mickelbart MV, Mengiste T. Crosstalk between biotic and abiotic stress responses in tomato is mediated by the AIM1 transcription factor. Plant J. 58: 347-360 (2009).

Agarie S, Shimoda T, Shimizu Y, Baumann K, Sunagawa H, Kondo A, Ueno O, Nakahara T, Nose A, Cushman JC. Salt tolerance, salt accumulation, and ionic homeostasis in an epidermal bladder-cell-less mutant of the common ice plant Mesembryanthemum crystallinum. J. Exp. Bot. 58: 1957-1967 (2007).

Albrecht G, Mustroph A, Fox TC. Sugar and fructan accumulation during metabolic adjustment between respiration and fermentation under low oxygen conditions in wheat roots. Physiol. Plant. 120: 93-105 (2004).

Allen GJ, Kuchitsu K, Chu SP, Murata Y, Schroeder JI. Arabidopsis abi1-1 and abi2-1 phosphatase mutations reduce abscisic acid-induced cytoplasmic calcium rises in guard cells. Plant Cell 11: 1785-1798 (1999).

Amemiya T, Kanayama Y, Yamaki S, Yamada K, Shiratake K. Fruit-specific V-ATPase suppression in antisense-transgenic tomato reduces fruit growth and seed formation. Planta 223: 1272-1280 (2006).

Amlund H, Berntssen MH. Arsenobetaine in Atlantic salmon (Salmo salar L.): influence of seawater adaptation. Comp. Biochem. Physiol. C. Toxicol. Pharmacol. 138: 507-514 (2004).

An R, Chen QJ, Chai MF, Lu PL, Su Z, Qin ZX, Chen J, Wang XC. AtNHX8, a member of the monovalent cation: proton antiporter-1 family in Arabidopsis thaliana, encodes a putative Li/H antiporter. Plant J. 49: 718-728 (2007).

Anderson JV, Li QB, Haskell DW, Guy CL. Structural organization of the spinach endoplasmic reticulum-luminal 70-kilodalton heat-shock cognate gene and expression of 70-kilodalton heat-shock genes during cold acclimation. Plant Physiol. 104: 1359-1370 (1994).

Andres-Colas N, Sancenon V, Rodriguez-Navarro S, Mayo S, Thiele DJ, Ecker JR, Puig S, Penarrubia L. The Arabidopsis heavy metal P-type ATPase HMA5 interacts with metallochaperones and functions in copper detoxification of roots. Plant J. 45: 225-236 (2006).

Antoine W, Stewart JM, de los Reyes BG. The rice homolog of the sodium/lithium tolerance gene functions as molecular chaperon in vitro. Physiol. Plant. 125: 299-310 (2005).

Apse MP, Sottosanto JB, Blumwald E. Vacuolar cation/H+ exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant of AtNHX1, the Arabidopsis vacuolar Na+/H+ antiporter. Plant J. 36: 229-239 (2003).

Arkin IT, Xu H, Jensen MO, Arbely E, Bennett ER, Bowers KJ, Chow E, Dror RO, Eastwood MP, Flitman-Tene R, Gregersen BA, Klepeis JL, Kolossváry I, Shan Y, Shaw DE. Mechanism of Na+/H+ antiporting. Science 317: 799-803 (2007).

Aschner M, Vrana KE, Zheng W. Manganese uptake and distribution in the central nervous system. Neurotoxicology 20: 173-180 (1999).

Attard GS, Templer RH, Smith WS, Hunt AN, Jackowski S. Modulation of CTP:phosphocholine cytidylyltransferase by membrane curvature elastic stress. Proc. Natl. Acad. Sci. U.S.A. 97: 9032-9036 (2000).

Aung K, Lin SI, Wu CC, Huang YT, Su CL, Chiou TJ. pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol. 141: 1000-1011 (2006).

Bak S, Feyereisen R. The involvement of two P450 enzymes, CYP83B1 and CYP83A1, in auxin homeostasis and glucosinolate biosynthesis. Plant Physiol. 127: 108-118 (2001).

Ballere CL. Circadian maestro leads plant gene expression symphony. Trends Plant Sci. 6: 96-97 (2001).

Bally J, Nadai M, Vitel M, Rolland A, Dumain R, Dubald M. Plant physiological adaptations to the massive foreign protein synthesis occurring in recombinant chloroplasts. Plant Physiol. 150: 1474-1481 (2009).

Bang JW, Crockford DJ, Holmes E, Pazos F, Sternberg MJ, Muggleton SH, Nicholson JK. Integrative top-down system metabolic modeling in experimental disease states via data-driven Bayesian methods. J. Proteome Res. 7: 497-503 (2008).

Barbour SE, Kapur A, Deal CL. Regulation of phosphatidylcholine homeostasis by calcium-independent phospholipase A2. Biochim. Biophys. Acta 1439: 77-88 (1999).

Barjaktarovic Z, Schutz W, Madlung J, Fladerer C, Nordheim A, Hampp R. Changes in the effective gravitational field strength affect the state of phosphorylation of stress-related proteins in callus cultures of Arabidopsis thaliana. J. Exp. Bot. 60: 779-789 (2009).

Barkla BJ, Pantoja O. Physiology of ion transport across the tonoplast of higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 159-184 (1996).

Barrero-Gil J, Rodríguez-Navarro A, Benito B. Cloning of the PpNHAD1 transporter of Physcomitrella patens, a chloroplast transporter highly conserved in photosynthetic eukaryotic organisms. J. Exp. Bot. 58: 2839-2849 (2007).

Bassingthwaighte JB. Strategies for the physiome project. Ann. Biomed. Eng. 28: 1043-1058 (2000).

Baudouin E, Frendo P, Le Gleuher M, Puppo A. A Medicago sativa haem oxygenase gene is preferentially expressed in root nodules. J. Exp. Bot. 55: 43-47 (2004).

Baxter IR, Vitek O, Lahner B, Muthukumar B, Borghi M, Morrissey J, Guerinot ML, Salt DE. The leaf ionome as a multivariable system to detect a plant's physiological status. Proc. Natl. Acad. Sci. U.S.A. 105: 12081-12086 (2008).

Becher M, Talke IN, Krall L, Kramer U. Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant J. 37: 251-268 (2004).

Berezin I, Mizrachy-Dagry T, Brook E, Mizrahi K, Elazar M, Zhuo S, Saul-Tcherkas V, Shaul O. Overexpression of AtMHX in tobacco causes increased sensitivity to Mg2+, Zn2+, and Cd2+ ions, induction of V-ATPase expression, and a reduction in plant size. Plant Cell Rep. 27: 939-949 (2008).

Besson-Bard A, Gravot A, Richaud P, Auroy P, Duc C, Gaymard F, Taconnat L, Renou JP, Pugin A, Wendehenne D. Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiol. 149: 1302-1315 (2009).

Beyhl D, Hortensteiner S, Martinoia E, Farmer EE, Fromm J, Marten I, Hedrich R. The fou2 mutation in the major vacuolar cation channel TPC1 confers tolerance to inhibitory luminal calcium. Plant J. 58: 715-723 (2009).

Blagoeva E, Dobrev PI, Malbeck J, Motyka V, Strnad M, Hanus J, Vankova R. Cytokinin N-glucosylation inhibitors suppress deactivation of exogenous cytokinins in radish, but their effect on active endogenous cytokinins is counteracted by other regulatory mechanisms. Physiol. Plant. 121: 215-222 (2004).

Bohmer M, Romeis T. A chemical-genetic approach to elucidate protein kinase function in planta. Plant Mol. Biol. 65: 817-827 (2007).

Bohnert HJ, Bressan RA, Hasegawa PM. Ion homeostasis and water deficit. In "Drought Tolerance in Cereals" (Ribaut JM, ed), Haworth's Food Products Press, New York (2005).

Boltianskaia IuV, Detkova EN, Shumskii AN, Dulov LE, Pusheva MA. Osmoadaptation in representatives of haloalkaliphilic bacteria from soda lakes. Mikrobiologiia 74: 738-744 (2005).

Borisjuk N, Sitailo L, Adler K, Malysheva L, Tewes A, Borisjuk L, Manteuffel R. Calreticulin expression in plant cells: developmental regulation, tissue specificity and intracellular distribution. Planta 206: 504-514 (1998).

Bouarab K, Adas F, Gaquerel E, Kloareg B, Salaun JP, Potin P. The innate immunity of a marine red alga involves oxylipins from both the eicosanoid and octadecanoid pathways. Plant Physiol. 135: 1838-1848 (2004).

Brahimi-Horn MC, Pouyssegur J. Oxygen, a source of life and stress. FEBS Lett. 581: 3582-3591 (2007).

Brand U, Grunewald M, Hobe M, Simon R. Regulation of CLV3 expression by two homeobox genes in Arabidopsis. Plant Physiol. 129: 565-575 (2002).

Briat JF, Curie C, Gaymard F. Iron utilization and metabolism in plants. Curr. Opin. Plant Biol. 10: 276-282 (2007).

Britto DT, Kronzucker HJ. Nitrogen acquisition, PEP carboxylase, and cellular pH homeostasis: new views on old paradigms. Plant Cell Environ. 28: 1396-1409 (2005).

Brosnan JT. The 1986 Borden award lecture. The role of the kidney in amino acid metabolism and nutrition. Can. J. Physiol. Pharmacol. 65: 2355-2362 (1987).

Bueso E, Alejandro S, Carbonell P, Perez-Amador MA, Fayos J, Belles JM, Rodriguez PL, Serrano R. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J. 52: 1052-1065 (2007).

Bulgakov VP, Tchernoded GK, Mischenko NP, Shkryl YN, Glazunov VP, Fedoreyev SA, Zhuravlev YN. Effects of Ca2+ channel blockers and protein kinase/phosphatase inhibitors on growth and anthraquinone production in Rubia cordifolia callus cultures transformed by the rolB and rolC genes. Planta 217: 349-355 (2003).

Burke MA, Ardehali H. Mitochondrial ATP-binding cassette proteins. Transl. Res. 150: 73-80 (2007).

Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. Structural genomics: beyond the human genome project. Nat. Genet. 23: 151-157 (1999).

Burstenbinder K, Rzewuski G, Wirtz M, Hell R, Sauter M. The role of methionine recycling for ethylene synthesis in Arabidopsis. Plant J. 49: 238-249 (2007).

Busch A, Rimbauld B, Naumann B, Rensch S, Hippler M. Ferritin is required for rapid remodeling of the photosynthetic apparatus and minimizes photo-oxidative stress in response to iron availability in Chlamydomonas reinhardtii. Plant J. 55: 201-211 (2008).

Byrd C, Turner GC, Varshavsky A. The N-end rule pathway controls the import of peptides through degradation of a transcriptional repressor. EMBO J. 17: 269-277 (1998).

Cadoret JC, Rousseau B, Perewoska I, Sicora C, Cheregi O, Vass I, Houmard J. Cyclic nucleotides, the photosynthetic apparatus and response to a UV-B stress in the cyanobacterium synechocystis sp. PCC 6803. J. Biol. Chem. 280: 33935-33944 (2005).

Carroll AD, Fox GG, Laurie S, Phillips R, Ratcliffe RG, Stewart GR. Ammonium assimilation and the role of gamma-aminobutyric-acid in pH homeostasis in carrot cell suspensions. Plant Physiol. 106: 513-520 (1994).

Cassin G, Mari S, Curie C, Briat JF, Czernic P. Increased sensitivity to iron deficiency in Arabidopsis thaliana overaccumulating nicotianamine. J. Exp. Bot. 60: 1249-1259 (2009).

Cedersund G, Stralfors P. Putting the pieces together in diabetes research: towards a hierarchical model of whole-body glucose homeostasis. Eur. J. Pharm. Sci. 36: 91-104 (2009).

Celenza JL, Quiel JA, Smolen GA, Merrikh H, Silvestro AR, Normanly J, Bender J. The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis. Plant Physiol. 137: 253-262 (2005).

Cellier F, Conejero G, Ricaud L, Luu DT, Lepetit M, Gosti F, Casse F. Characterization of AtCHX17, a member of the cation/H exchangers, CHX family, from Arabidopsis thaliana suggests a role in K homeostasis. Plant J. 39: 834-846 (2004).

Chandran D, Tai YC, Hather G, Dewdney J, Denoux C, Burgess DG, Ausubel FM, Speed TP, Wildermuth MC. Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Plant Physiol. 149: 1435-1451 (2009).

Chen A, Weber AJ. Expression of glial fibrillary acidic protein and glutamine synthetase by Muller cells after optic nerve damage and intravitreal application of brain-derived neurotrophic factor. Glia 38: 115-125 (2002).

Chen H, McCaig BC, Melotto M, He SY, Howe GA.. Regulation of plant arginase by wounding, jasmonate, and the phytotoxin coronatine. J. Biol. Chem. 279: 45998-46007 (2004).

Chen ZH, Jenkins GI, Nimmo HG. pH and carbon supply control the expression of phosphoenolpyruvate carboxylase kinase genes in Arabidopsis thaliana. Plant Cell Environ. 31: 1844-1850 (2008).

Cheng NH, Pittman JK, Shigaki T, Lachmansingh J, Leclere S, Lahner B, Salt DE, Hirschi KD. Functional association of Arabidopsis CAX1 and CAX3 is required for normal growth and ion homeostasis. Plant Physiol. 138: 2048-2060 (2005).

Chiarugi P, Cirri P. Redox regulation of protein tyrosine phosphatases during receptor tyrosine kinase signal transduction. Trends Biochem. Sci. 28: 509-514 (2003).

Chilley PM, Casson SA, Tarkowski P, Hawkins N, Wang KL, Hussey PJ, Beale M, Ecker JR, Sandberg GK, Lindsey K. The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. Plant Cell 18: 3058-3072 (2006).

Chiou TJ. The role of microRNAs in sensing nutrient stress. Plant Cell Environ. 30: 323-332 (2007).

Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL. Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 18: 412-421 (2006).

Chiu CC, Lin CS, Hsia AP, Su RC, Lin HL, Tsay YF. Mutation of a nitrate transporter, AtNRT1:4, results in a reduced petiole nitrate content and altered leaf development. Plant Cell Physiol. 45: 1139-1148 (2004).

Choe KP, Strange K. Molecular and genetic characterization of osmosensing and signal transduction in the nematode Caenorhabditis elegans. FEBS J. 274: 5782-5789 (2007).

Chwals WJ. Regulation of the cellular and physiological effects of glutamine. Mini. Rev. Med. Chem. 4: 833-838 (2004).

Clemens S. Molecular mechanisms of plant metal tolerance and homeostasis. Planta 212: 475-486 (2001).

Clemens S, Schroeder JI, Degenkolb T. Caenorhabditis elegans expresses a functional phytochelatin synthase. Eur. J. Biochem. 268: 3640-3643 (2001).

Cobbett C, Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 53: 159-182 (2002).

Coll NS, Danon A, Meurer J, Cho WK, Apel K. Characterization of soldat8, a suppressor of singlet oxygen-induced cell death in Arabidopsis seedlings. Plant Cell Physiol. 50: 707-718 (2009).

Colmenero-Flores JM, Martinez G, Gamba G, Vazquez N, Iglesias DJ, Brumos J, Talon M. Identification and functional characterization of cation-chloride cotransporters in plants. Plant J. 50: 278-292 (2007).

Cooper AJ, Freed BR. Metabolism of [13N]ammonia in rat lung. Neurochem. Int. 47: 103-118 (2005).

Cuin TA, Betts SA, Chalmandrier R, Shabala S. A root's ability to retain K+ correlates with salt tolerance in wheat. J. Exp. Bot. 59: 2697-2706 (2008).

Cuin TA, Shabala S. Amino acids regulate salinity-induced potassium efflux in barley root epidermis. Planta 225: 753-761 (2007).

Cuin TA, Shabala S. Exogenously supplied compatible solutes rapidly ameliorate NaCl-induced potassium efflux from barley roots. Plant Cell Physiol. 46: 1924-1933 (2005).

Curie C, Briat JF. Iron transport and signaling in plants. Annu. Rev. Plant Biol. 54: 183-206 (2003).

Curie C, Cassin G, Couch D, Divol F, Higuchi K, Le Jean M, Misson J, Schikora A, Czernic P, Mari S. Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters. Ann. Bot. (Lond.) 103: 1-11 (2009).

Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX. The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol. 144: 121-133 (2007).

Dat JF, Pellinen R, Van De Cotte B, Langebartels C, Kangasjarvi J, Inze D, Van Breusegem F. Changes in hydrogen peroxide homeostasis trigger an active cell death process in tobacco. Plant J. 33: 621-632 (2003).

Davey MW, Kenis K, Keulemans J. Genetic control of fruit vitamin C contents. Plant Physiol. 142: 343-351 (2006).

Davis EA, Cuesta-Munoz A, Raoul M, Buettger C, Sweet I, Moates M, Magnuson MA, Matschinsky FM. Mutants of glucokinase cause hypoglycaemia- and hyperglycaemia syndromes and their analysis illuminates fundamental quantitative concepts of glucose homeostasis. Diabetologia 42: 1175-1186 (1999).

De Angeli A, Monachello D, Ephritikhine G, Frachisse JM, Thomine S, Gambale F, Barbier-Brygoo H. The nitrate/proton antiporter AtCLCa mediates nitrate accumulation in plant vacuoles. Nature 442: 939-942 (2006).

De Silva DL, Mansfield TA, McAinsh MR. Changes in stomatal behaviour in the calcicole Leontodon hispidus due to the disruption by ozone of the regulation of apoplastic Ca2+ by trichomes. Planta 214: 158-162 (2001).

Delhaize E. A metal-accumulator mutant of Arabidopsis thaliana. Plant Physiol. 111: 849-855 (1996).

Delhaize E, Gruber BD, Pittman JK, White RG, Leung H, Miao Y, Jiang L, Ryan PR, Richardson AE. A role for the AtMTP11 gene of Arabidopsis in manganese transport and tolerance. Plant J. 51: 198-210 (2007).

Depuydt S, Trenkamp S, Fernie AR, Elftieh S, Renou JP, Vuylsteke M, Holsters M, Vereecke D. An integrated genomics approach to define niche establishment by Rhodococcus fascians. Plant Physiol. 149: 1366-1386 (2009).

Detkova EN, Boltianskaia IuV. Osmoadaptation of haloalkaliphilic bacteria: role of osmoregulators and their possible practical application. Mikrobiologiia 76: 581-593 (2007).

Dettmer J, Schubert D, Calvo-Weimar O, Stierhof YD, Schmidt R, Schumacher K. Essential role of the V-ATPase in male gametophyte development. Plant J. 41: 117-124 (2005).

Dickson RC. Sphingolipid functions in Saccharomyces cerevisiae: comparison to mammals. Annu. Rev. Biochem. 67: 27-48 (1998).

Diedhiou CJ, Popova OV, Dietz KJ, Golldack D. The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biol. 8: 49 (2008).

Dietz KJ, Tavakoli N, Kluge C, Mimura T, Sharma SS, Harris GC, Chardonnens AN, Golldack D. Significance of the V-type ATPase for the adaptation to stressful growth conditions and its regulation on the molecular and biochemical level. J. Exp. Bot. 52: 1969-1980 (2001).

Doerner P. Phosphate starvation signaling: a threesome controls systemic P(i) homeostasis. Curr. Opin. Plant Biol. 11: 536-540 (2008).

Douchkov D, Gryczka C, Stephan UW, Hell R, Baumlein H. Ectopic expression of nicotianamine synthase genes results in improved iron accumulation and increased nickel tolerance in transgenic tobacco. Plant Cell Environ. 28: 365-374 (2005).

Douglas Grubb C, Zipp BJ, Ludwig-Muller J, Masuno MN, Molinski TF, Abel S. Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis. Plant J. 40: 893-908 (2004).

Dubos C, Willment J, Huggins D, Grant GH, Campbell MM. Kanamycin reveals the role played by glutamate receptors in shaping plant resource allocation. Plant J. 43: 348-355 (2005).

Dumas ME, Barton RH, Toye A, Cloarec O, Blancher C, Rothwell A, Fearnside J, Tatoud R, Blanc V, Lindon JC, Mitchell SC, Holmes E, McCarthy MI, Scott J, Gauguier D, Nicholson JK. Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice. Proc. Natl. Acad. Sci. U.S.A. 103: 12511-1256 (2006).

Duy D, Wanner G, Meda AR, von Wirén N, Soll J, Philippar K. PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport. Plant Cell 19: 986-1006 (2007).

Eckardt NA. MicroRNAs regulate auxin homeostasis and plant development. Plant Cell 17: 1335-1338 (2005).

Eren E, Arguello JM. Arabidopsis HMA2, a divalent heavy metal-transporting P(IB)-type ATPase, is involved in cytoplasmic Zn2+ homeostasis. Plant Physiol. 136: 3712-3723 (2004).

Espen L, Dell'Orto M, De Nisi P, Zocchi G. Metabolic responses in cucumber (Cucumis sativus L.) roots under Fe-deficiency: a 31P-nuclear magnetic resonance in-vivo study. Planta 210: 985-992 (2000).

Espen L, Nocito FF, Cocucci M. Effect of NO3- transport and reduction on intracellular pH: an in vivo NMR study in maize roots. J. Exp. Bot. 55: 2053-2061 (2004).

Espunya MC, Diaz M, Moreno-Romero J, Martinez MC. Modification of intracellular levels of glutathione-dependent formaldehyde dehydrogenase alters glutathione homeostasis and root development. Plant Cell Environ. 29: 1002-1011 (2006).

Ettinger WF, Clear AM, Fanning KJ, Peck ML. Identification of a Ca2+/H+ antiport in the plant chloroplast thylakoid membrane. Plant Physiol. 119: 1379-1386 (1999).

Falkenberg B, Witt I, Zanor MI, Steinhauser D, Mueller-Roeber B, Hesse H, Hoefgen R. Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. J. Exp. Bot. 59: 2831-2846 (2008).

Fambrini M, Bonsignori E, Rapparini F, Cionini G, Michelotti V, Bertini D, Baraldi R, Pugliesi C. stem fasciated, a recessive mutation in sunflower (Helianthus annuus), alters plant morphology and auxin level. Ann. Bot. (Lond.) 98: 715-730 (2006).

Fanapour PC, Yug B, Kochar MS. Hyperhomocysteinemia: an additional cardiovascular risk factor. W.M.J. 98: 51-54 (1999).

Ferreira S, Hjerno K, Larsen M, Wingsle G, Larsen P, Fey S, Roepstorff P, Salome Pais M. Proteome profiling of Populus euphratica Oliv. upon heat stress. Ann. Bot. (Lond.) 98: 361-377 (2006).

Fiscus EL, Booker FL, Burkey KO. Crop responses to ozone: uptake, modes of action, carbon assimilation and partitioning. Plant Cell Environ. 28: 997-1011 (2005).

Fleet CM, Yamaguchi S, Hanada A, Kawaide H, David CJ, Kamiya Y, Sun TP. Overexpression of AtCPS and AtKS in Arabidopsis confers increased ent-kaurene production but no increase in bioactive gibberellins. Plant Physiol. 132: 830-839 (2003).

Forlani G. Differential expression of 5-enol-pyruvyl-shikimate-3-phosphate synthase isoforms in elicitor-treated, cultured maize cells. Funct. Plant Biol. 29: 1483-1490 (2002).

Forlani G, Mangiagalli A, Pinter C, Nielsen E. Expression of delta(1)-pyrroline-5-carboxylate dehydrogenase and proline/arginine homeostasis in Solanum tuberosum. Physiol. Plant. 110: 22-27 (2000).

Forsberg J, Strom J, Kieselbach T, Larsson H, Alexciev K, Engstrom A, Akerlund HE. Protease activities in the chloroplast capable of cleaving an LHCII N-terminal peptide. Physiol. Plant. 123: 21-29 (2005).

Foyer CH, Bloom AJ, Queval G, Noctor G. Photorespiratory metabolism: genes, mutants, energetics, and redox signaling. Annu. Rev. Plant. Biol. 60: 455-484 (2009).

Frachisse JM, Thomine S, Colcombet J, Guern J, Barbier-Brygoo H. Sulfate is both a substrate and an activator of the voltage-dependent anion channel of Arabidopsis hypocotyl cells. Plant Physiol. 121: 253-262 (1999).

Frank W, Baar KM, Qudeimat E, Woriedh M, Alawady A, Ratnadewi D, Gremillon L, Grimm B, Reski R. A mitochondrial protein homologous to the mammalian peripheral-type benzodiazepine receptor is essential for stress adaptation in plants. Plant J. 51: 1004-1018 (2007).

Fu L, Miseta A, Hunton D, Marchase RB, Bedwell DM. Loss of the major isoform of phosphoglucomutase results in altered calcium homeostasis in Saccharomyces cerevisiae. J. Biol. Chem. 275: 5431-5440 (2000).

Futamura M, Hosaka H, Kadotani A, Shimazaki H, Sasaki K, Ohyama S, Nishimura T, Eiki JI, Nagata Y. An allosteric activator of glucokinase impairs the interaction of glucokinase and glucokinase regulatory protein and regulates glucose metabolism. J. Biol. Chem. 281: 37668-37674 (2006).

Gallego-Giraldo L, Ubeda-Tomas S, Gisbert C, Garcia-Martinez JL, Moritz T, Lopez-Diaz I. Gibberellin homeostasis in tobacco is regulated by gibberellin metabolism genes with different gibberellin sensitivity. Plant Cell Physiol. 49: 679-690 (2008).

Galmes J, Pou A, Alsina MM, Tomas M, Medrano H, Flexas J. Aquaporin expression in response to different water stress intensities and recovery in Richter-110 (Vitis sp.): relationship with ecophysiological status. Planta 226: 671-681 (2007).

Gao C, Wang Y, Liu G, Yang C, Jiang J, Li H. Expression profiling of salinity-alkali stress responses by large-scale expressed sequence tag analysis in Tamarix hispid. Plant Mol. Biol. 66: 245-258 (2008).

Geiger D, Becker D, Vosloh D, Gambale F, Palme K, Rehers M, Anschuetz U, Dreyer I, Kudla J, Hedrich R. Heteromeric AtKC1.AKT1 channels in Arabidopsis roots facilitate growth under K+-limiting conditions. J. Biol. Chem. 284: 21288-21295 (2009).

Ghassemian M, Lutes J, Chang HS, Lange I, Chen W, Zhu T, Wang X, Lange BM. Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana. Phytochemistry 69: 2899-2911 (2008).

Gigolashvili T, Berger B, Mock HP, Müller C, Weisshaar B, Flugge UI. The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant J. 50: 886-901 (2007).

Gilliland A, Singh DP, Hayward JM, Moore CA, Murphy AM, York CJ, Slator J, Carr JP. Genetic modification of alternative respiration has differential effects on antimycin A-induced versus salicylic acid-induced resistance to tobacco mosaic virus. Plant Physiol. 132: 1518-1528 (2003).

Go VL, Nguyen CT, Harris DM, Paul Lee WN. Nutrient-gene interaction: metabolic genotype-phenotype relationship. J. Nutr. 135: 3016S-3020S (2005).

Golldack D, Quigley F, Michalowski CB, Kamasani UR, Bohnert HJ. Salinity stress-tolerant and -sensitive rice (Oryza sativa L.) regulate AKT1-type potassium channel transcripts differently. Plant Mol. Biol. 51: 71-81 (2003).

Gong Z, Koiwa H, Cushman MA, Ray A, Bufford D, Kore-eda S, Matsumoto TK, Zhu J, Cushman JC, Bressan RA, Hasegawa PM. Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. Plant Physiol. 126: 363-375 (2001).

Grabov A. Plant KT/KUP/HAK potassium transporters: single family - multiple functions. Ann. Bot. (Lond.) 99: 1035-1041 (2007).

Grassi F, Moretto N, Rivetti C, Cellai S, Betti M, Marquez AJ, Maraini G, Ottonello S. Structural and functional properties of lengsin, a pseudo-glutamine synthetase in the transparent human lens. Biochem. Biophys. Res. Commun. 350: 424-429 (2006).

Graziano M, Lamattina L. Nitric oxide accumulation is required for molecular and physiological responses to iron deficiency in tomato roots. Plant J. 52: 949-860 (2007).

Grossman EB, Hebert SC. Renal inner medullary choline dehydrogenase activity: characterization and modulation. Am. J. Physiol. 256: F107-F112 (1989).

Grubb CD, Abel S. Glucosinolate metabolism and its control. Trends Plant Sci. 11: 89-100 (2006).

Gu R, Fonseca S, Puskas LG, Hackler L Jr, Zvara A, Dudits D, Pais MS. Transcript identification and profiling during salt stress and recovery of Populus euphratica. Tree Physiol. 24: 265-276 (2004).

Gunter TE, Yule DI, Gunter KK, Eliseev RA, Salter JD. Calcium and mitochondria. FEBS Lett. 567: 96-102 (2004).

Guo YQ, Tian ZY, Yan DL, Zhang J, Qin P. Analysis of gene expression involved in the response to salt stress in the dicot halophyte Kosteletzkya virginica L. seedlings. Yi Chuan 30: 941-950 (2008).

Hakkinen ST, Tilleman S, Swiatek A, De Sutter V, Rischer H, Vanhoutte I, Van Onckelen H, Hilson P, Inze D, Oksman-Caldentey KM, Goossens A. Functional characterisation of genes involved in pyridine alkaloid biosynthesis in tobacco. Phytochemistry 68: 2773-2785 (2007).

Halperin SJ, Gilroy S, Lynch JP. Sodium chloride reduces growth and cytosolic calcium, but does not affect cytosolic pH, in root hairs of Arabidopsis thaliana L. J. Exp. Bot. 54: 1269-1280 (2003).

Hamelet J, Seltzer V, Petit E, Noll C, Andreau K, Delabar JM, Janel N. Cystathionine beta synthase deficiency induces catalase-mediated hydrogen peroxide detoxification in mice liver. Biochim. Biophys. Acta 1782: 482-488 (2008).

Hanikenne M, Kramer U, Demoulin V, Baurain D. A comparative inventory of metal transporters in the green alga Chlamydomonas reinhardtii and the red alga Cyanidioschizon merolae. Plant Physiol. 137: 428-446 (2005).

Hanikenne M, Motte P, Wu MCS, Wang T, Loppes R, Matagne RF. A mitochondrial half-size ABC transporter is involved in cadmium tolerance in Chlamydomonas reinhardtii. Plant Cell Environ. 28: 863-873 (2005).

Hannemann J, Poorter H, Usadel B, Blasing OE, Finck A, Tardieu F, Atkin OK, Pons T, Stitt M, Gibon Y. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell Environ. 32: 1185-1200 (2009).

Hanson PI, Schulman H. Neuronal Ca2+/calmodulin-dependent protein kinases. Annu. Rev. Biochem. 61: 559-601 (1992).

Harding SA, Oh SH, Roberts DM. Transgenic tobacco expressing a foreign calmodulin gene shows an enhanced production of active oxygen species. EMBO J. 16: 1137-1144 (1997).

Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ. Plant cellular and molecular responses to high salinity. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51: 463-499 (2000).

Hasemann CA, Istvan ES, Uyeda K, Deisenhofer J. The crystal structure of the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase reveals distinct domain homologies. Structure 4: 1017-1029 (1996).

Hashida SN, Takahashi H, Uchimiya H. The role of NAD biosynthesis in plant development and stress responses. Ann. Bot. (Lond.) 103: 819-824 (2009).

Hassinen VH, Tuomainen M, Peraniemi S, Schat H, Karenlampi SO, Tervahauta AI. Metallothioneins 2 and 3 contribute to the metal-adapted phenotype but are not directly linked to Zn accumulation in the metal hyperaccumulator, Thlaspi caerulescens. J. Exp. Bot. 60: 187-196 (2009).

Haydon MJ, Cobbett CS. A novel major facilitator superfamily protein at the tonoplast influences zinc tolerance and accumulation in Arabidopsis. Plant Physiol. 143: 1705-1719 (2007).

Hell R, Stephan UW. Iron uptake, trafficking and homeostasis in plants. Planta 216: 541-551 (2003).

Helmersson A, von Arnold S, Bozhkov PV. The level of free intracellular zinc mediates programmed cell death/cell survival decisions in plant embryos. Plant Physiol. 147: 1158-1167 (2008).

Hensley K, Floyd RA. Reactive oxygen species and protein oxidation in aging: A look back, a look ahead. Arch. Biochem. Biophys. 397: 377-383 (2002).

Herbik A, Bolling C, Buckhout TJ. The involvement of a multicopper oxidase in iron uptake by the green algae Chlamydomonas reinhardtii. Plant Physiol. 130: 2039-2048 (2002).

Hesse SJ, Ruijter GJ, Dijkema C, Visser J. Intracellular pH homeostasis in the filamentous fungus Aspergillus niger. Eur. J. Biochem. 269: 3485-3494 (2002).

Hetherington AM, Brownlee C. The generation of Ca2+ signals in plants. Annu. Rev. Plant Biol. 55: 401-427 (2004).

Higuchi K, Watanabe S, Takahashi M, Kawasaki S, Nakanishi H, Nishizawa NK, Mori S. Nicotianamine synthase gene expression differs in barleyand rice under Fe-deficient conditions. Plant J. 25: 159-167 (2001).

Himelblau E, Mira H, Lin SJ, Culotta VC, Penarrubia L, Amasino RM. Identification of a functional homolog of the yeast copper homeostasis gene ATX1 from Arabidopsis. Plant Physiol. 117: 1227-1234 (1998).

Hirata D, Harada S, Namba H, Miyakawa T. Adaptation to high-salt stress in Saccharomyces cerevisiae is regulated by Ca2+/calmodulin-dependent phosphoprotein phosphatase (calcineurin) and cAMP-dependent protein kinase. Mol. Gen. Genet. 249: 257-264 (1995).

Hoecker U, Toledo-Ortiz G, Bender J, Quail PH. The photomorphogenesis-related mutant red1 is defective in CYP83B1, a red light-induced gene encoding a cytochrome P450 required for normal auxin homeostasis. Planta 219: 195-200 (2004).

Holzl G, Witt S, Gaude N, Melzer M, Schottler MA, Dormann P. The role of diglycosyl lipids in photosynthesis and membrane lipid homeostasis in Arabidopsis. Plant Physiol. 150: 1147-1159 (2009).

Horie T, Yoshida K, Nakayama H, Yamada K, Oiki S, Shinmyo A. Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa. Plant J. 27: 129-138 (2001).

Huang J, Rozwadowski K, Bhinu VS, Schafer U, Hannoufa A. Manipulation of sinapine, choline and betaine accumulation in Arabidopsis seed: towards improving the nutritional value of the meal and enhancing the seedling performance under environmental stresses in oilseed crops. Plant Physiol. Biochem. 46: 647-654 (2008).

Huang JW, Grunes DL, Kochian LV. Aluminum effects on calcium (45Ca2+) translocation in aluminum-tolerant and aluminum-sensitive wheat (Triticum aestivum L.) cultivars. Differential responses of the root apex versus mature root regions. Plant Physiol. 102: 85-93 (1993).

Hubbell JA. Materials as morphogenetic guides in tissue engineering. Curr. Opin. Biotechnol. 14: 551-558 (2003).

Hurth MA, Suh SJ, Kretzschmar T, Geis T, Bregante M, Gambale F, Martinoia E, Neuhaus HE. Impaired pH homeostasis in Arabidopsis lacking the vacuolar dicarboxylate transporter and analysis of carboxylic acid transport across the tonoplast. Plant Physiol. 137: 901-910 (2005).

Hussain D, Haydon MJ, Wang Y, Wong E, Sherson SM, Young J, Camakaris J, Harper JF, Cobbett CS. P-type ATPase heavy metal transporters with roles in essential zinc homeostasis in Arabidopsis. Plant Cell 16: 1327-1339 (2004).

Inada M, Ueda A, Shi W, Takabe T. A stress-inducible plasma membrane protein 3 (AcPMP3) in a monocotyledonous halophyte, Aneurolepidium chinense, regulates cellular Na(+) and K(+) accumulation under salt stress. Planta 220: 395-402 (2005).

Inoue H, Takahashi M, Kobayashi T, Suzuki M, Nakanishi H, Mori S, Nishizawa NK. Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice. Plant Mol. Biol. 66: 193-203 (2008).

Ishida S, Fukazawa J, Yuasa T, Takahashi Y. Involvement of 14-3-3 signaling protein binding in the functional regulation of the transcriptional activator REPRESSION OF SHOOT GROWTH by gibberellins. Plant Cell 16: 2641-2651 (2004).

Ishikawa T, Morimoto Y, Madhusudhan R, Sawa Y, Shibata H, Yabuta Y, Nishizawa A, Shigeoka S. Acclimation to diverse environmental stresses caused by a suppression of cytosolic ascorbate peroxidase in tobacco BY-2 cells. Plant Cell Physiol. 46: 1264-1271 (2005).

Ishizaki T, Ohsumi C, Totsuka K, Igarashi D. Analysis of glutamate homeostasis by overexpression of Fd-GOGAT gene in Arabidopsis thaliana. Amino Acids May 26 [Epub ahead of print] (2009).

Israelsson M, Mellerowicz E, Chono M, Gullberg J, Moritz T. Cloning and overproduction of gibberellin 3-oxidase in hybrid aspen trees. Effects on gibberellin homeostasis and development. Plant Physiol. 135: 221-230 (2004).

Ivashikina N, Deeken R, Ache P, Kranz E, Pommerrenig B, Sauer N, Hedrich R. Isolation of AtSUC2 promoter-GFP-marked companion cells for patch-clamp studies and expression profiling. Plant J. 36: 931-945 (2003).

Jackson RG, Kowalczyk M, Li Y, Higgins G, Ross J, Sandberg G, Bowles DJ. Over-expression of an Arabidopsis gene encoding a glucosyltransferase of indole-3-acetic acid: phenotypic characterisation of transgenic lines. Plant J. 32: 573-583 (2002).

Jacob Y, Mongkolsiriwatana C, Veley KM, Kim SY, Michaels SD. The nuclear pore protein AtTPR is required for RNA homeostasis, flowering time, and auxin signaling. Plant Physiol. 144: 1383-1390 (2007).

Janne J, Alhonen L, Pietila M, Keinanen TA. Genetic approaches to the cellular functions of polyamines in mammals. Eur. J. Biochem. 271: 877-894 (2004).

Jansson EA, Huang L, Malkey R, Govoni M, Nihlen C, Olsson A, Stensdotter M, Petersson J, Holm L, Weitzberg E, Lundberg JO. A mammalian functional nitrate reductase that regulates nitrite and nitric oxide homeostasis. Nat. Chem. Biol. 4: 411-417 (2008).

Jimenez C, Capasso JM, Edelstein CL, Rivard CJ, Lucia S, Breusegem S, Berl T, Segovia M. Different ways to die: cell death modes of the unicellular chlorophyte Dunaliella viridis exposed to various environmental stresses are mediated by the caspase-like activity DEVDase. J. Exp. Bot. 60: 815-828 (2009).

Johannes E, Crofts A, Sanders D. Control of Cl- efflux in Chara corallina by cytosolic pH, free Ca2+, and phosphorylation indicates a role of plasma membrane anion channels in cytosolic pH regulation. Plant Physiol. 118: 173-181 (1998).

Jonczyk R, Ronconi S, Rychlik M, Genschel U. Pantothenate synthetase is essential but not limiting for pantothenate biosynthesis in Arabidopsis. Plant Mol. Biol. 66: 1-14 (2008).

Kaiser BN, Moreau S, Castelli J, Thomson R, Lambert A, Bogliolo S, Puppo A, Day DA. The soybean NRAMP homologue, GmDMT1, is a symbiotic divalent metal transporter capable of ferrous iron transport. Plant J. 35: 295-304 (2003).

Kamen B. Folate and antifolate pharmacology. Semin. Oncol. 24: S18-S30 (1997).

Kamsteeg EJ, Hendriks G, Boone M, Konings IB, Oorschot V, van der Sluijs P, Klumperman J, Deen PM. Short-chain ubiquitination mediates the regulated endocytosis of the aquaporin-2 water channel. Proc. Natl. Acad. Sci. U.S.A. 103: 18344-18349 (2006).

Kaplan B, Sherman T, Fromm H. Cyclic nucleotide-gated channels in plants. FEBS Lett. 581: 2237-2246 (2007).

Kasimova MR, Grigiene J, Krab K, Hagedorn PH, Flyvbjerg H, Andersen PE, Moller IM. The free NADH concentration is kept constant in plant mitochondria under different metabolic conditions. Plant Cell 18: 688-698 (2006).

Kawakatsu T, Taramino G, Itoh J, Allen J, Sato Y, Hong SK, Yule R, Nagasawa N, Kojima M, Kusaba M, Sakakibara H, Sakai H, Nagato Y. PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice. Plant J. 58: 1028-1040 (2009).

Keren N, Aurora R, Pakrasi HB. Critical roles of bacterioferritins in iron storage and proliferation of cyanobacteria. Plant Physiol. 135: 1666-1673 (2004).

Khoo SH, Al-Rubeai M. Metabolic characterization of a hyper-productive state in an antibody producing NS0 myeloma cell line. Metab. Eng. 11: 199-211 (2009).

Kim DY, Bovet L, Kushnir S, Noh EW, Martinoia E, Lee Y. AtATM3 is involved in heavy metal resistance in Arabidopsis. Plant Physiol. 140: 922-932 (2006).

Kim HB, Kwon M, Ryu H, Fujioka S, Takatsuto S, Yoshida S, An CS, Lee I, Hwang I, Choe S. The regulation of DWARF4 expression is likely a critical mechanism in maintaining the homeostasis of bioactive brassinosteroids in Arabidopsis thaliana. Plant Physiol. 140: 548-557 (2006).

Kim SA, Guerinot ML. Mining iron: iron uptake and transport in plants. FEBS Lett. 581: 2273-2280 (2007).

Kim SG, Kim ST, Kang SY, Wang Y, Kim W, Kang KY. Proteomic analysis of reactive oxygen species (ROS)-related proteins in rice roots. Plant Cell Rep. 27: 363-375 (2008).

Kitami T, Rubio R, O'Brien W, Quackenbush J, Nadeau JH. Gene-environment interactions reveal a homeostatic role for cholesterol metabolism during dietary folate perturbation in mice. Physiol. Genomics 35: 182-190 (2008).

Klatte M, Schuler M, Wirtz M, Fink-Straube C, Hell R, Bauer P. The analysis of Arabidopsis nicotianamine synthase mutants reveals functions for nicotianamine in seed iron loading and iron deficiency responses. Plant Physiol. 150: 257-271 (2009).

Kliebenstein DJ. Secondary metabolites and plant/environment interactions: a view through Arabidopsis thaliana tinged glasses. Plant Cell Environ. 27: 675-684 (2004).

Ko K, Yang H, Noureddin M, Iglesia-Ara A, Xia M, Wagner C, Luka Z, Mato JM, Lu SC. Changes in S-adenosylmethionine and GSH homeostasis during endotoxemia in mice. Lab. Invest. 88: 1121-1129 (2008).

Koiwa H, Bressan RA, Hasegawa PM. Identification of plant stress-responsive determinants in Arabidopsis by large-scale forward genetic screens. J. Exp. Bot. 57: 1119-1128 (2006).

Kooijman SA. Quantitative aspects of metabolic organization: a discussion of concepts. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 356: 331-349 (2001).

Kooijman SA, Kooi BW, Hallam TG. The application of mass and energy conservation laws in physiologically structured population models of heterotrophic organisms. J. Theor. Biol. 197: 371-392 (1999).

Kore-eda S, Cushman MA, Akselrod I, Bufford D, Fredrickson M, Clark E, Cushman JC. Transcript profiling of salinity stress responses by large-scale expressed sequence tag analysis in Mesembryanthemum crystallinum. Gene 341: 83-92 (2004).

Kovermann P, Meyer S, Hortensteiner S, Picco C, Scholz-Starke J, Ravera S, Lee Y, Martinoia E. The Arabidopsis vacuolar malate channel is a member of the ALMT family. Plant J. 52: 1169-1180 (2007).

Kramer U, Talke IN, Hanikenne M. Transition metal transport. FEBS Lett. 581: 2263-2272 (2007).

Kronzucker HJ, Szczerba MW, Britto DT. Cytosolic potassium homeostasis revisited: 42K-tracer analysis in Hordeum vulgare L. reveals set-point variations in [K+]. Planta 217: 540-546 (2003).

Kurimoto K, Day DA, Lambers H, Noguchi K. Effect of respiratory homeostasis on plant growth in cultivars of wheat and rice. Plant Cell Environ. 27: 853-862 (2004).

Kusano T, Berberich T, Tateda C, Takahashi Y. Polyamines: essential factors for growth and survival. Planta 228: 367-381 (2008).

Kushnir S, Babiychuk E, Storozhenko S, Davey MW, Papenbrock J, De Rycke RR,Engler G, Stephan UW, Lange H, Kispal G, Lill R, Van Montagu MM. A mutation of the mitochondrial ABC transporter Sta1 leads to dwarfism and chlorosis in the Arabidopsis mutant starik. Plant Cell 13: 89-100 (2001).

Lamitina T, Huang CG, Strange K. Genome-wide RNAi screening identifies protein damage as a regulator of osmoprotective gene expression. Proc. Natl. Acad. Sci. U.S.A. 103: 12173-12178 (2006).

Lanot A, Hodge D, Jackson RG, George GL, Elias L, Lim EK, Vaistij FE, Bowles DJ. The glucosyltransferase UGT72E2 is responsible for monolignol 4-O-glucoside production in Arabidopsis thaliana. Plant J. 48: 286-295 (2006).

Lanot A, Hodge D, Lim EK, Vaistij FE, Bowles DJ. Redirection of flux through the phenylpropanoid pathway by increased glucosylation of soluble intermediates. Planta 228: 609-616 (2008).

Lariguet P, Boccalandro HE, Alonso JM, Ecker JR, Chory J, Casal JJ, Fankhauser C. A growth regulatory loop that provides homeostasis to phytochrome A signaling. Plant Cell 15: 2966-2978 (2003).

Lasswell J, Rogg LE, Nelson DC, Rongey C, Bartel B. Cloning and characterization of IAR1, a gene required for auxin conjugate sensitivity in Arabidopsis. Plant Cell 12: 2395-2408 (2000).

Latz A, Becker D, Hekman M, Muller T, Beyhl D, Marten I, Eing C, Fischer A, Dunkel M, Bertl A, Rapp UR, Hedrich R. TPK1, a Ca(2+)-regulated Arabidopsis vacuole two-pore K(+) channel is activated by 14-3-3 proteins. Plant J. 52: 449-459 (2007).

Le Jean M, Schikora A, Mari S, Briat JF, Curie C. A loss-of-function mutation in AtYSL1 reveals its role in iron and nicotianamine seed loading. Plant J. 44: 769-782 (2005).

Lee EK, Kwon M, Ko JH, Yi H, Hwang MG, Chang S, Cho MH. Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance. Plant Physiol. 134: 528-538 (2004).

Lee PY, Kho CW, Lee DH, Kang S, Kang S, Lee SC, Park BC, Cho S, Bae KH, Park SG. Glutathione peroxidase 3 of Saccharomyces cerevisiae suppresses non-enzymatic proteolysis of glutamine synthetase in an activity-independent manner. Biochem. Biophys. Res. Commun. 362: 405-409 (2007).

Lee U, Wie C, Fernandez BO, Feelisch M, Vierling E. Modulation of nitrosative stress by S-nitrosoglutathione reductase is critical for thermotolerance and plant growth in Arabidopsis. Plant Cell 20: 786-802 (2008).

Lehman-McKeeman LD, Gamsky EA. Diethanolamine inhibits choline uptake and phosphatidylcholine synthesis in Chinese hamster ovary cells. Biochem. Biophys. Res. Commun. 262: 600-604 (1999).

Leone A, Costa A, Tucci M, Grillo S. Comparative analysis of short- and long-term changes in gene expression caused by low water potential in potato (Solanum tuberosum) cell-suspension cultures. Plant Physiol. 106: 703-712 (1994).

Leshem Y, Seri L, Levine A. Induction of phosphatidylinositol 3-kinase-mediated endocytosis by salt stress leads to intracellular production of reactive oxygen species and salt tolerance. Plant J. 51: 185-197 (2007).

Leung J, Merlot S, Giraudat J. The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction. Plant Cell 9: 759-771 (1997).

Lew VL, Hockaday AR. The effects of transport perturbations on the homeostasis of erythrocytes. Novartis Found. Symp. 226: 37-50 (1999).

Li J, Wu XD, Hao ST, Wang XJ, Ling HQ. Proteomic response to iron deficiency in tomato root. Proteomics 8: 2299-2311 (2008).

Li Z, Vance DE. Thematic review series: glycerolipids. Phosphatidylcholine and choline homeostasis. J. Lipid Res. 49: 1187-1194 (2008).

Lillo C, Meyer C, Ruoff P. The nitrate reductase circadian system. The central clock dogma contra multiple oscillatory feedback loops. Plant Physiol. 125: 1554-1557 (2001).

Lin WH, Wang Y, Mueller-Roeber B, Brearley CA, Xu ZH, Xue HW. At5PTase13 modulates cotyledon vein development through regulating auxin homeostasis. Plant Physiol. 139: 1677-1691 (2005).

Lin WY, Lin SI, Chiou TJ. Molecular regulators of phosphate homeostasis in plants. J. Exp. Bot. 60: 1427-1438 (2009).

Liu W, Fairbairn DJ, Reid RJ, Schachtman DP. Characterization of two HKT1 homologues from Eucalyptus camaldulensis that display intrinsic osmosensing capability. Plant Physiol. 127: 283-294 (2001).

Ljung K, Bhalerao RP, Sandberg G. Sites and homeostatic control of auxin biosynthesis in Arabidopsis during vegetative growth. Plant J. 28: 465-474 (2001).

Ljung K, Ostin A, Lioussanne L, Sandberg G. Developmental regulation of indole-3-acetic acid turnover in Scots pine seedlings. Plant Physiol. 125: 464-475 (2001).

Locato V, de Pinto MC, De Gara L. Different involvement of the mitochondrial, plastidial and cytosolic ascorbate-glutathione redox enzymes in heat shock responses. Physiol. Plant. 135: 296-306 (2009).

Lohmann R, Souba WW, Bode BP. Rat liver endothelial cell glutamine transporter and glutaminase expression contrast with parenchymal cells. Am. J. Physiol. 276: G743-G750 (1999).

Loizeau K, De Brouwer V, Gambonnet B, Yu A, Renou JP, Van Der Straeten D, Lambert WE, Rebeille F, Ravanel S. A genome-wide and metabolic analysis determined the adaptive response of Arabidopsis cells to folate depletion induced by methotrexate. Plant Physiol. 148: 2083-2095 (2008).

Loizeau K, Gambonnet B, Zhang GF, Curien G, Jabrin S, Van Der Straeten D, Lambert WE, Rebeille F, Ravanel S. Regulation of one-carbon metabolism in Arabidopsis: the N-terminal regulatory domain of cystathionine gamma-synthase is cleaved in response to folate starvation. Plant Physiol. 145: 491-503 (2007).

Lu W, Zhu H, Wen S, Yang W, Shaw GM, Lammer EJ, Finnell RH. Nicotinamide N-methyl transferase (NNMT) gene polymorphisms and risk for spina bifida. Birth Defects Res. A. Clin. Mol. Teratol. 82: 670-675 (2008).

Lugan R, Niogret MF, Kervazo L, Larher FR, Kopka J, Bouchereau A. Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function. Plant Cell Environ. 32: 95-108 (2009).

Ma X, Qian Q, Zhu D. Expression of a calcineurin gene improves salt stress tolerance in transgenic rice. Plant Mol. Biol. 58: 483-495 (2005).

Maathuis FJ. The role of monovalent cation transporters in plant responses to salinity. J. Exp. Bot. 57: 1137-1147 (2006).

Magidin M, Pittman JK, Hirschi KD, Bartel B. ILR2, a novel gene regulating IAA conjugate sensitivity and metal transport in Arabidopsis thaliana. Plant J. 35: 523-534 (2003).

Mahalakshmi S, Christopher GS, Reddy TP, Rao KV, Reddy VD. Isolation of a cDNA clone (PcSrp) encoding serine-rich-protein from Porteresia coarctata T. and its expression in yeast and finger millet (Eleusine coracana L.) affording salt tolerance. Planta 224: 347-359 (2006).

Majeran W, van Wijk KJ. Cell-type-specific differentiation of chloroplasts in C4 plants. Trends Plant Sci. 14: 100-109 (2009).

Majeran W, Zybailov B, Ytterberg AJ, Dunsmore J, Sun Q, van Wijk KJ. Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells. Mol. Cell. Proteomics 7: 1609-1638 (2008).

Malanovic N, Streith I, Wolinski H, Rechberger G, Kohlwein SD, Tehlivets O. S-Adenosyl-L-homocysteine hydrolase, key enzyme of methylation metabolism, regulates phosphatidylcholine synthesis and triacylglycerol homeostasis in yeast: implications for homocysteine as a risk factor of atherosclerosis. J. Biol. Chem. 283: 23989-23999 (2008).

Mandard S, Muller M, Kersten S. Peroxisome proliferator-activated receptor alpha target genes. Cell. Mol. Life Sci. 61: 393-416 (2004).

Mani S, Van de Cotte B, Van Montagu M, Verbruggen N. Altered levels of proline dehydrogenase cause hypersensitivity to proline and its analogs in Arabidopsis. Plant Physiol. 128: 73-83 (2002).

Manzano D, Busquets A, Closa M, Hoyerova K, Schaller H, Kaminek M, Arro M, Ferrer A. Overexpression of farnesyl diphosphate synthase in Arabidopsis mitochondria triggers light-dependent lesion formation and alters cytokinin homeostasis. Plant Mol. Biol. 61: 195-213 (2006).

Marin K, Kanesaki Y, Los DA, Murata N, Suzuki I, Hagemann M. Gene expression profiling reflects physiological processes in salt acclimation of Synechocystis sp. strain PCC 6803. Plant Physiol. 136: 3290-3300 (2004).

Marin-Manzano MC, Rodriguez-Rosales MP, Belver A, Donaire JP, Venema K. Heterologously expressed protein phosphatase calcineurin downregulates plant plasma membrane H+-ATPase activity at the post-translational level. FEBS Lett. 576: 266-270 (2004).

Martinoia E, Maeshima M, Neuhaus HE. Vacuolar transporters and their essential role in plant metabolism. J. Exp. Bot. 58: 83-102 (2007).

Maryani MM, Morse MV, Bradley G, Irving HR, Cahill DM, Gehring CA. In situ localization associates biologically active plant natriuretic peptide immuno-analogues with conductive tissue and stomata. J. Exp. Bot. 54: 1553-1564 (2003).

Maseda PH, Fernandez RJ. Stay wet or else: three ways in which plants can adjust hydraulically to their environment. J. Exp. Bot. 57: 3963-3977 (2006).

Massonneau A, Martinoia E, Dietz KJ, Mimura T. Phosphate uptake across the tonoplast of intact vacuoles isolated from suspension-cultured cells of Catharanthus roseus (L.) G. Don. Planta 211: 390-395 (2000).

Mateo A, Funck D, Muhlenbock P, Kular B, Mullineaux PM, Karpinski S. Controlled levels of salicylic acid are required for optimal photosynthesis and redox homeostasis. J. Exp. Bot. 57: 1795-1807 (2006).

Matsumoto TK, Pardo JM, Takeda S, Bressan RA, Hasegawa PM. Tobacco and Arabidiopsis SLT1 mediate salt tolerance of yeast. Plant Mol. Biol. 45: 489-500 (2001).

Matsushita A, Furumoto T, Ishida S, Takahashi Y. AGF1, an AT-hook protein, is necessary for the negative feedback of AtGA3ox1 encoding GA 3-oxidase. Plant Physiol. 143: 1152-1162 (2007).

Mauriat M, Moritz T. Analyses of GA20ox- and GID1-over-expressing aspen suggest that gibberellins play two distinct roles in wood formation. Plant J. 58: 989-1003 (2009).

McAdams HH, Arkin A. Simulation of prokaryotic genetic circuits. Annu. Rev. Biophys. Biomol. Struct. 27: 199-224 (1998).

McCallum JA, Pither-Joyce M, Shaw M. Sulfur deprivation and genotype affect gene expression and metabolism of onion roots. J. Am. Soc. Hortic. Sci. 127: 583-589 (2002).

Meinzer FC. Co-ordination of vapour and liquid phase water transport properties in plants. Plant Cell Environ. 25: 265-274 (2002).

Meinzer FC. Co-ordination of vapour and liquid phase water transport properties in plants. Plant Cell Environ. 25: 265-274 (2002).

Meinzer FC, Woodruff DR, Shaw DC. Integrated responses of hydraulic architecture, water and carbon relations of western hemlock to dwarf mistletoe infection. Plant Cell Environ. 27: 937-946 (2004).

Mendoza I, Rubio F, Rodriguez-Navarro A, Pardo JM. The protein phosphatase calcineurin is essential for NaCl tolerance of Saccharomyces cerevisiae. J. Biol. Chem. 269: 8792-8796 (1994).

Mendoza-Cozatl DG, Moreno-Sanchez R. Control of glutathione and phytochelatin synthesis under cadmium stress. Pathway modeling for plants. J. Theor. Biol. 238: 919-936 (2006).

Mercade M, Cocaign-Bousquet M, Loubiere P. Glyceraldehyde-3-phosphate dehydrogenase regulation in Lactococcus lactis ssp. cremoris MG1363 or relA mutant at low pH. J. Appl. Microbiol. 100: 1364-1372 (2006).

Meyerhoff O, Muller K, Roelfsema MR, Latz A, Lacombe B, Hedrich R, Dietrich P, Becker D. AtGLR3.4, a glutamate receptor channel-like gene is sensitive to touch and cold. Planta 222: 418-427 (2005).

Miao Y, Lv D, Wang P, Wang XC, Chen J, Miao C, Song CP. An Arabidopsis glutathione peroxidase functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Plant Cell 18: 2749-2766 (2006).

Mikkelsen MD, Fuller VL, Hansen BG, Nafisi M, Olsen CE, Nielsen HB, Halkier BA. Controlled indole-3-acetaldoxime production through ethanol-induced expression of CYP79B2. Planta 229: 1209-1217 (2009).

Mikkelsen MD, Naur P, Halkier BA. Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis. Plant J. 37: 770-777 (2004).

Mills RF, Krijger GC, Baccarini PJ, Hall JL, Williams LE. Functional expression of AtHMA4, a P1B-type ATPase of the Zn/Co/Cd/Pb subclass. Plant J. 35: 164-176 (2003).

Milner MJ, Kochian LV. Investigating heavy-metal hyperaccumulation using Thlaspi caerulescens as a model system. Ann. Bot. (Lond.) 102: 3-13 (2008).

Mimura T. Physiological control of phosphate uptake and phosphate homeostasis in plant cells. Aust. J. Plant Physiol. 28: 653-658 (2001).

Mimura T, Reid RJ, Ohsumi Y, Smith FA. Induction of the Na+/Pi cotransport system in the plasma membrane of Chara corallina requires external Na+ and low levels of Pi. Plant Cell Environ. 25: 1475-1481 (2002).

Mira H, Martinez N, Penarrubia L. Expression of a vegetative-storage-protein gene from Arabidopsis is regulated by copper, senescence and ozone. Planta 214: 939-946 (2002).

Miyama M, Tada Y. Transcriptional and physiological study of the response of Burma mangrove (Bruguiera gymnorhiza) to salt and osmotic stress. Plant Mol. Biol. 68: 119-129 (2008).

Mizuno D, Higuchi K, Sakamoto T, Nakanishi H, Mori S, Nishizawa NK. Three nicotianamine synthase genes isolated from maize are differentially regulated by iron nutritional status. Plant Physiol. 132: 1989-1997 (2003).

Mizuno S, Osakabe Y, Maruyama K, Ito T, Osakabe K, Sato T, Shinozaki K, Yamaguchi-Shinozaki K. Receptor-like protein kinase 2 (RPK 2) is a novel factor controlling anther development in Arabidopsis thaliana. Plant J. 50: 751-766 (2007).

Mo X, Zhu Q, Li X, Li J, Zeng Q, Rong H, Zhang H, Wu P. The hpa1 mutant of Arabidopsis reveals a crucial role of histidine homeostasis in root meristem maintenance. Plant Physiol. 141: 1425-1435 (2006).

Mobasheri A, Wray S, Marples D. Distribution of AQP2 and AQP3 water channels in human tissue microarrays. J. Mol. Histol. 36: 1-14 (2005).

Moeckel GW, Lien YH. Bicarbonate dependency of betaine synthesis in cultured LLC-PK1 cells. Am. J. Physiol. 266: F512-F515 (1994).

Molina-Hoppner A, Doster W, Vogel RF, Ganzle MG. Protective effect of sucrose and sodium chloride for Lactococcus lactis during sublethal and lethal high-pressure treatments. Appl. Environ. Microbiol. 70: 2013-2020 (2004).

Morgan MJ, Lehmann M, Schwarzlander M, Baxter CJ, Sienkiewicz-Porzucek A, Williams TC, Schauer N, Fernie AR, Fricker MD, Ratcliffe RG, Sweetlove LJ, Finkemeier I. Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis. Plant Physiol. 147: 101-114 (2008).

Moschou PN, Sarris PF, Skandalis N, Andriopoulou AH, Paschalidis KA, Panopoulos NJ, Roubelakis-Angelakis KA. Engineered polyamine catabolism preinduces tolerance of tobacco to bacteria and oomycetes. Plant Physiol. 149: 1970-1981 (2009).

Motyka V, Faiss M, Strand M, Kaminek M, Schmulling T. Changes in cytokinin content and cytokinin oxidase activity in response to derepression of ipt gene transcription in transgenic tobacco calli and plants. Plant Physiol. 112: 1035-1043 (1996).

Muller R, Borghi L, Kwiatkowska D, Laufs P, Simon R. Dynamic and compensatory responses of Arabidopsis shoot and floral meristems to CLV3 signaling. Plant Cell 18: 1188-1198 (2006).

Muller S, Zimmermann FK, Boles E. Mutant studies of phosphofructo-2-kinases do not reveal an essential role of fructose-2,6-bisphosphate in the regulation of carbon fluxes in yeast cells. Microbiology 143: 3055-3061 (1997).

Murgia I, Delledonne M, Soave C. Nitric oxide mediates iron-induced ferritin accumulation in Arabidopsis. Plant J. 30: 521-528 (2002).

Muro-Pastor MI, Reyes JC, Florencio FJ. Ammonium assimilation in cyanobacteria. Photosynth. Res. 83: 135-150 (2005).

Nagahara N, Yoshii T, Abe Y, Matsumura T. Thioredoxin-dependent enzymatic activation of mercaptopyruvate sulfurtransferase. An intersubunit disulfide bond serves as a redox switch for activation. J. Biol. Chem. 282: 1561-1569 (2007).

Navarre DA, Wendehenne D, Durner J, Noad R, Klessig DF. Nitric oxide modulates the activity of tobacco aconitase. Plant Physiol. 122: 573-582 (2000).

Nikiforova VJ, Bielecka M, Gakiere B, Krueger S, Rinder J, Kempa S, Morcuende R, Scheible WR, Hesse H, Hoefgen R. Effect of sulfur availability on the integrity of amino acid biosynthesis in plants. Amino Acids 30: 173-183 (2006).

Nikiforova VJ, Daub CO, Hesse H, Willmitzer L, Hoefgen R. Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J. Exp. Bot. 56: 1887-1896 (2005).

Ning J, Cumming JR. Arbuscular mycorrhizal fungi alter phosphorus relations of broomsedge (Andropogon virginicus L.) plants. J. Exp. Bot. 52: 1883-1891 (2001).

Niu X, Narasimhan ML, Salzman RA, Bressan RA, Hasegawa PM. NaCl regulation of plasma membrane H(+)-ATPase gene expression in a glycophyte and a halophyte. Plant Physiol. 103: 713-718 (1993).

Noctor G, Dutilleul C, De Paepe R, Foyer CH. Use of mitochondrial electron transport mutants to evaluate the effects of redox state on photosynthesis, stress tolerance and the integration of carbon/nitrogen metabolism. J. Exp. Bot. 55: 49-57 (2004).

Noctor G, Gomez L, Vanacker H, Foyer CH. Interactions between biosynthesis, compartmentation and transport in the control of glutathione homeostasis and signalling. J. Exp. Bot. 53: 1283-1304 (2002).

Noguchi T, Fujioka S, Choe S, Takatsuto S, Yoshida S, Yuan H, Feldmann KA, Tax FE. Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids. Plant Physiol. 121: 743-752 (1999).

Nose Y, Rees EM, Thiele DJ. Structure of the Ctr1 copper trans'PORE'ter reveals novel architecture. Trends Biochem. Sci. 31: 604-607 (2006).

Novoselov SV, Calvisi DV, Labunskyy VM, Factor VM, Carlson BA, Fomenko DE, Moustafa ME, Hatfield DL, Gladyshev VN. Selenoprotein deficiency and high levels of selenium compounds can effectively inhibit hepatocarcinogenesis in transgenic mice. Oncogene 24: 8003-8011 (2005).

Obara M, Szeliga M, Albrecht J. Regulation of pH in the mammalian central nervous system under normal and pathological conditions: facts and hypotheses. Neurochem. Int. 52: 905-919 (2008).

Obata T, Kitamoto HK, Nakamura A, Fukuda A, Tanaka Y. Rice Shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells. Plant Physiol. 144: 1978-1985 (2007).

Obeid R, Herrmann W. Homocysteine and lipids: S-adenosyl methionine as a key intermediate. FEBS Lett. 583: 1215-1225 (2009).

Ober ES, Sharp RE. Electrophysiological responses of maize roots to low water potentials: relationship to growth and ABA accumulation. J. Exp. Bot. 54: 813-824 (2003).

Okamoto M, Hayashi K. Homeostatic capability of rate-sensitive feedback system: mathematical model. Am. J. Physiol. 247: R927-R931 (1984).

Ortega-Villasante C, Rellan-Alvarez R, Del Campo FF, Carpena-Ruiz RO, Hernandez LE. Cellular damage induced by cadmium and mercury in Medicago sativa. J. Exp. Bot. 56: 2239-2251 (2005).

Osmont KS, Sibout R, Hardtke CS. Hidden branches: developments in root system architecture. Annu. Rev. Plant Biol. 58: 93-113 (2007).

Padmanaban S, Chanroj S, Kwak JM, Li X, Ward JM, Sze H. Participation of endomembrane cation/H+ exchanger AtCHX20 in osmoregulation of guard cells. Plant Physiol. 144: 82-93 (2007).

Palatnik JF, Valle EM, Carrillo N. Oxidative stress causes ferredoxin-NADP+ reductase solubilization from the thylakoid membranes in methyl viologen-treated plants. Plant Physiol. 115: 1721-1727 (1997).

Pant BD, Buhtz A, Kehr J, Scheible WR. MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J. 53: 731-738 (2008).

Pardo JM, Cubero B, Leidi EO, Quintero FJ. Alkali cation exchangers: roles in cellular homeostasis and stress tolerance. J. Exp. Bot. 57: 1181-1199 (2006).

Parre E, Ghars MA, Leprince AS, Thiery L, Lefebvre D, Bordenave M, Richard L, Mazars C, Abdelly C, Savoure A. Calcium signaling via phospholipase C is essential for proline accumulation upon ionic but not nonionic hyperosmotic stresses in Arabidopsis. Plant Physiol. 144: 503-512 (2007).

Paul MJ, Foyer CH. Sink regulation of photosynthesis. J. Exp. Bot. 52: 1383-1400 (2001).

Pence NS, Larsen PB, Ebbs SD, Letham DL, Lasat MM, Garvin DF, Eide D, Kochian LV. The molecular physiology of heavy metal transport in the Zn/Cd hyperaccumulator Thlaspi caerulescens. Proc. Natl. Acad. Sci. U.S.A. 97: 4956-4960 (2000).

Perez-Lopez U, Robredo A, Lacuesta M, Sgherri C, Munoz-Rueda A, Navari-Izzo F, Mena-Petite A. The oxidative stress caused by salinity in two barley cultivars is mitigated by elevated CO2. Physiol. Plant. 135: 29-42 (2009).

Petersen MC, Hejgaard J, Thompson GA, Schulz A. Cucurbit phloem serpins are graft-transmissible and appear to be resistant to turnover in the sieve element-companion cell complex. J. Exp. Bot. 56: 3111-3120 (2005).

Pfannschmidt T, Brautigam K, Wagner R, Dietzel L, Schroter Y, Steiner S, Nykytenko A. Potential regulation of gene expression in photosynthetic cells by redox and energy state: approaches towards better understanding. Ann. Bot. (Lond.) 103: 599-607 (2009).

Pianelli K, Mari S, Marques L, Lebrun M, Czernic P. Nicotianamine over-accumulation confers resistance to nickel in Arabidopsis thaliana. Transgenic Res. 14: 739-748 (2005).

Pilon M, Abdel-Ghany SE, Cohu CM, Gogolin KA, Ye H. Copper cofactor delivery in plant cells. Curr. Opin. Plant Biol. 9: 256-263 (2006).

Pineros MA, Cancado GM, Maron LG, Lyi SM, Menossi M, Kochian LV. Not all ALMT1-type transporters mediate aluminum-activated organic acid responses: the case of ZmALMT1 - an anion-selective transporter. Plant J. 53: 352-367 (2008).

Pittman JK. Managing the manganese: molecular mechanisms of manganese transport and homeostasis. New Phytol. 167: 733-742 (2005).

Plieth C, Sattelmacher B, Hansen UP, Knight MR. Low-pH-mediated elevations in cytosolic calcium are inhibited by aluminium: a potential mechanism for aluminium toxicity. Plant J. 18: 643-650 (1999).

Ponka P. Rare causes of hereditary iron overload. Semin. Hematol. 39: 249-262 (2002).

Popova OV, Golldack D. In the halotolerant Lobularia maritima (Brassicaceae) salt adaptation correlates with activation of the vacuolar H(+)-ATPase and the vacuolar Na+/H+ antiporter. J. Plant Physiol. 164: 1278-1288 (2007).

Popova OV, Yang O, Dietz KJ, Golldack D. Differential transcript regulation in Arabidopsis thaliana and the halotolerant Lobularia maritima indicates genes with potential function in plant salt adaptation. Gene 423: 142-148 (2008).

Poppenberger B, Fujioka S, Soeno K, George GL, Vaistij FE, Hiranuma S, Seto H, Takatsuto S, Adam G, Yoshida S, Bowles D. The UGT73C5 of Arabidopsis thaliana glucosylates brassinosteroids. Proc. Natl. Acad. Sci. U.S.A. 102: 15253-15258 (2005).

Poschenrieder C, Tolra R, Barcelo J. Can metals defend plants against biotic stress? Trends Plant Sci. 11: 288-295 (2006).

Powers MV, Workman P. Inhibitors of the heat shock response: biology and pharmacology. FEBS Lett. 581: 3758-3769 (2007).

Pratelli R, Sutter JU, Blatt MR. A new catch in the SNARE. Trends Plant Sci. 9: 187-195 (2004).

Preger V, Scagliarini S, Pupillo P, Trost P. Identification of an ascorbate-dependent cytochrome b of the tonoplast membrane sharing biochemical features with members of the cytochrome b561 family. Planta 220: 365-375 (2005).

Priest DM, Ambrose SJ, Vaistij FE, Elias L, Higgins GS, Ross AR, Abrams SR, Bowles DJ. Use of the glucosyltransferase UGT71B6 to disturb abscisic acid homeostasis in Arabidopsis thaliana. Plant J. 46: 492-502 (2006).

Pucar D, Janssen E, Dzeja PP, Juranic N, Macura S, Wieringa B, Terzic A. Compromised energetics in the adenylate kinase AK1 gene knockout heart under metabolic stress. J. Biol. Chem. 275: 41424-41429 (2000).

Puglisi JL, Wang F, Bers DM. Modeling the isolated cardiac myocyte. Prog. Biophys. Mol. Biol. 85: 163-178 (2004).

Puig S, Andres-Colas N, Garcia-Molina A, Penarrubia L. Copper and iron homeostasis in Arabidopsis: responses to metal deficiencies, interactions and biotechnological applications. Plant Cell Environ. 30: 271-290 (2007).

Punshon T, Guerinot ML, Lanzirotti A. Using synchrotron X-ray fluorescence microprobes in the study of metal homeostasis in plants. Ann. Bot. (Lond.) 103: 665-672 (2009).

Qin G, Gu H, Zhao Y, Ma Z, Shi G, Yang Y, Pichersky E, Chen H, Liu M, Chen Z, Qu LJ. An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development. Plant Cell 17: 2693-2704 (2005).

Qiu QS, Barkla BJ, Vera-Estrella R, Zhu JK, Schumaker KS. Na+/H+ exchange activity in the plasma membrane of Arabidopsis. Plant Physiol. 132: 1041-1052 (2003).

Quettier AL, Shaw E, Eastmond PJ. SUGAR-DEPENDENT6 encodes a mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase, which is required for glycerol catabolism and post-germinative seedling growth in Arabidopsis. Plant Physiol. 148: 519-528 (2008).

Quint M, Barkawi LS, Fan KT, Cohen JD, Gray WM. Arabidopsis IAR4 modulates auxin response by regulating auxin homeostasis. Plant Physiol. 150: 748-758 (2009).

Raboy V, Gerbasi PF, Young KA, Stoneberg SD, Pickett SG, Bauman AT, Murthy PP, Sheridan WF, Ertl DS. Origin and seed phenotype of maize low phytic acid 1-1 and low phytic acid 2-1. Plant Physiol. 124: 355-368 (2000).

Raghothama KG. Phosphate acquisition. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 665-693 (1999).

Ranf S, Wunnenberg P, Lee J, Becker D, Dunkel M, Hedrich R, Scheel D, Dietrich P. Loss of the vacuolar cation channel, AtTPC1, does not impair Ca2+ signals induced by abiotic and biotic stresses. Plant J. 53: 287-299 (2008).

Rausch C, Bucher M. Molecular mechanisms of phosphate transport in plants. Planta 216: 23-37 (2002).

Rausell A, Kanhonou R, Yenush L, Serrano R, Ros R. The translation initiation factor eIF1A is an important determinant in the tolerance to NaCl stress in yeast and plants. Plant J. 34: 257-267 (2003).

Rawyler AJ, Braendle RA. N-Acylphosphatidylethanolamine accumulation in potato cells upon energy shortage caused by anoxia or respiratory inhibitors. Plant Physiol. 127: 240-251 (2001).

Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S. Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses. Proc. Natl. Acad. Sci. U.S.A. 103: 15687-15692 (2006).

Reid RJ. Mechanisms of micronutrient uptake in plants. Aust. J. Plant Physiol. 28: 659-666 (2001).

Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, Lin HX. A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat. Genet. 37: 1141-1146 (2005).

Riemenschneider A, Riedel K, Hoefgen R, Papenbrock J, Hesse H. Impact of reduced O-acetylserine(thiol)lyase isoform contents on potato plant metabolism. Plant Physiol. 137: 892-900 (2005).

Rinder J, Casazza AP, Hoefgen R, Hesse H. Regulation of aspartate-derived amino acid homeostasis in potato plants (Solanum tuberosum L.) by expression of E. coli homoserine kinase. Amino Acids 34: 213-222 (2008).

Rodriguez-Caso C, Montanez R, Cascante M, Sanchez-Jimenez F, Medina MA. Mathematical modeling of polyamine metabolism in mammals. J. Biol. Chem. 281: 21799-21812 (2006).

Roosens NH, Bernard C, Leplae R, Verbruggen N. Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens. FEBS Lett. 577: 9-16 (2004).

Roosens NH, Leplae R, Bernard C, Verbruggen N. Variations in plant metallothioneins: the heavy metal hyperaccumulator Thlaspi caerulescens as a study case. Planta 222: 716-729 (2005).

Rubio V, Bustos R, Irigoyen ML, Cardona-Lopez X, Rojas-Triana M, Paz-Ares J. Plant hormones and nutrient signaling. Plant Mol. Biol. 69: 361-373 (2009).

Rudella A, Friso G, Alonso JM, Ecker JR, van Wijk KJ. Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. Plant Cell 18: 1704-1721 (2006).

Rus A, Lee BH, Munoz-Mayor A, Sharkhuu A, Miura K, Zhu JK, Bressan RA, Hasegawa PM. AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta. Plant Physiol. 136: 2500-2511 (2004).

Rus AM, Bressan RA, Hasegawa PM. Unraveling salt tolerance in crops. Nat. Genet. 37: 1029-1030 (2005).

Rutschow H, Ytterberg AJ, Friso G, Nilsson R, van Wijk KJ. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis thaliana. Plant Physiol. 148: 156-175 (2008).

Ruttink T, Boot K, Kijne J, Bisseling T, Franssen H. ENOD40 affects elongation growth in tobacco Bright Yellow-2 cells by alteration of ethylene biosynthesis kinetics. J. Exp. Bot. 57: 3271-3282 (2006).

Saha N, Kharbuli ZY, Bhattacharjee A, Goswami C, Haussinger D. Effect of alkalinity (pH 10) on ureogenesis in the air-breathing walking catfish, Clarias batrachus. Comp. Biochem. Physiol. A-Mol. Integr. Physiol. 132: 353-364 (2002).

Sainz J, Pizarro F, Perez-Correa JR, Agosin E. Modeling of yeast metabolism and process dynamics in batch fermentation. Biotechnol. Bioeng. 81: 818-828 (2003).

Sakakibara H. Cytokinins: activity, biosynthesis, and translocation. Annu. Rev. Plant Biol. 57: 431-449 (2006).

Sakamoto W. Protein degradation machineries in plastids. Annu. Rev. Plant Biol. 57: 599-621 (2006).

Sakuragi Y, Maeda H, Dellapenna D, Bryant DA. alpha-Tocopherol plays a role in photosynthesis and macronutrient homeostasis of the cyanobacterium Synechocystis sp. PCC 6803 that is independent of its antioxidant function. Plant Physiol. 141: 508-521 (2006).

Sanchez DH, Lippold F, Redestig H, Hannah MA, Erban A, Kramer U, Kopka J, Udvardi MK. Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus. Plant J. 53: 973-987 (2008).

Sangster TA, Salathia N, Lee HN, Watanabe E, Schellenberg K, Morneau K, Wang H, Undurraga S, Queitsch C, Lindquist S. HSP90-buffered genetic variation is common in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 105: 2969-2974 (2008).

Sarret G, Harada E, Choi YE, Isaure MP, Geoffroy N, Fakra S, Marcus MA, Birschwilks M, Clemens S, Manceau A. Trichomes of tobacco excrete zinc as zinc-substituted calcium carbonate and other zinc-containing compounds. Plant Physiol. 141: 1021-1034 (2006).

Sauer J, Schreiber U, Schmid R, Volker U, Forchhammer K. Nitrogen starvation-induced chlorosis in Synechococcus PCC 7942. Low-level photosynthesis as a mechanism of long-term survival. Plant Physiol. 126: 233-243 (2001).

Sauer U, Schlattner U. Inverse metabolic engineering with phosphagen kinase systems improves the cellular energy state. Metab. Eng. 6: 220-228 (2004).

Savchenko G, Wiese C, Neimanis S, Hedrich R, Heber U. pH regulation in apoplastic and cytoplasmic cell compartments of leaves. Planta 211: 246-255 (2000).

Sawaki Y, Iuchi S, Kobayashi Y, Kobayashi Y, Ikka T, Sakurai N, Fujita M, Shinozaki K, Shibata D, Kobayashi M, Koyama H. STOP1 regulates multiple genes that protect Arabidopsis from proton and aluminum toxicities. Plant Physiol. 150: 281-294 (2009).

Schachtman D, Liu W. Molecular pieces to the puzzle of the interaction between potassium and sodium uptake in plants. Trends Plant Sci. 4: 281-287 (1999).

Scheibe R, Backhausen JE, Emmerlich V, Holtgrefe S. Strategies to maintain redox homeostasis during photosynthesis under changing conditions. J. Exp. Bot. 56: 1481-1489 (2005).

Schneider BL, Ruback S, Kiupakis AK, Kasbarian H, Pybus C, Reitzer L. The Escherichia coli gabDTPC operon: specific gamma-aminobutyrate catabolism and nonspecific induction. J. Bacteriol. 184: 6976-6986 (2002).

Scholz FG, Bucci SJ, Goldstein G, Meinzer FC, Franco AC, Miralles-Wilhelm F. Biophysical properties and functional significance of stem water storage tissues in neotropical savanna trees. Plant Cell Environ. 30: 236-248 (2007).

Schumacher K. Endomembrane proton pumps: connecting membrane and vesicle transport. Curr. Opin. Plant Biol. 9: 595-600 (2006).

Schuster J, Binder S. The mitochondrial branched-chain aminotransferase (AtBCAT-1) is capable to initiate degradation of leucine, isoleucine and valine in almost all tissues in Arabidopsis thaliana. Plant Mol. Biol. 57: 241-254 (2005).

Seguela M, Briat JF, Vert G, Curie C. Cytokinins negatively regulate the root iron uptake machinery in Arabidopsis through a growth-dependent pathway. Plant J. 55: 289-300 (2008).

Semenza GL. Mitochondrial autophagy: life and breath of the cell. Autophagy 4: 534-536 (2008).

Senadheera P, Singh RK, Maathuis FJ. Differentially expressed membrane transporters in rice roots may contribute to cultivar dependent salt tolerance. J. Exp. Bot. 60: 2553-2563 (2009).

Shabala L, Cuin TA, Newman IA, Shabala S. Salinity-induced ion flux patterns from the excised roots of Arabidopsis sos mutants. Planta 222: 1041-1050 (2005).

Shabala S, Cuin TA. Potassium transport and plant salt tolerance. Physiol. Plant. 133: 651-669 (2008).

Shabala S, Cuin TA, Prismall L, Nemchinov LG. Expression of animal CED-9 anti-apoptotic gene in tobacco modifies plasma membrane ion fluxes in response to salinity and oxidative stress. Planta 227: 189-197 (2007).

Shabala S, Hariadi Y. Effects of magnesium availability on the activity of plasma membrane ion transporters and light-induced responses from broad bean leaf mesophyll. Planta 221: 56-65 (2005).

Shaul O. Magnesium transport and function in plants: the tip of the iceberg. Biometals 15: 309-323 (2002).

Shcolnick S, Keren N. Metal homeostasis in cyanobacteria and chloroplasts. Balancing benefits and risks to the photosynthetic apparatus. Plant Physiol. 141: 805-810 (2006).

Shen W, Wei Y, Dauk M, Tan Y, Taylor DC, Selvaraj G, Zou J. Involvement of a glycerol-3-phosphate dehydrogenase in modulating the NADH/NAD+ ratio provides evidence of a mitochondrial glycerol-3-phosphate shuttle in Arabidopsis. Plant Cell 18: 422-441 (2006).

Shi H, Xiong L, Stevenson B, Lu T, Zhu JK. The Arabidopsis salt overly sensitive 4 mutants uncover a critical role for vitamin B6 in plant salt tolerance. Plant Cell 14: 575-588 (2002).

Shi H, Zhu JK. Regulation of expression of the vacuolar Na+/H+ antiporter gene AtNHX1 by salt stress and abscisic acid. Plant Mol. Biol. 50: 543-550 (2002).

Shin D, Koo YD, Lee J, Lee HJ, Baek D, Lee S, Cheon CI, Kwak SS, Lee SY, Yun DJ. Athb-12, a homeobox-leucine zipper domain protein from Arabidopsis thaliana, increases salt tolerance in yeast by regulating sodium exclusion. Biochem. Biophys. Res. Commun. 323: 534-540 (2004).

Shin R, An JM, Park CJ, Kim YJ, Joo S, Kim WT, Paek KH. Capsicum annuum tobacco mosaic virus-induced clone 1 expression perturbation alters the plant's response to ethylene and interferes with the redox homeostasis. Plant Physiol. 135: 561-573 (2004).

Shulaev V, Cortes D, Miller G, Mittler R. Metabolomics for plant stress response. Physiol. Plant. 132: 199-208 (2008).

Shulman RG, Rothman DL. 13C NMR of intermediary metabolism: implications for systemic physiology. Annu. Rev. Physiol. 63: 15-48 (2001).

Singh AK, Elvitigala T, Bhattacharyya-Pakrasi M, Aurora R, Ghosh B, Pakrasi HB. Integration of carbon and nitrogen metabolism with energy production is crucial to light acclimation in the cyanobacterium Synechocystis. Plant Physiol. 148: 467-478 (2008).

Singla-Pareek SL, Yadav SK, Pareek A, Reddy MK, Sopory SK. Transgenic tobacco overexpressing glyoxalase pathway enzymes grow and set viable seeds in zinc spiked soils. Plant Physiol. 140: 613-623 (2006).

Sivaguru M, Fujiwara T, Samaj J, Baluska F, Yang Z, Osawa H, Maeda T, Mori T, Volkmann D, Matsumoto H. Aluminum-induced 1-->3-beta-D-glucan inhibits cell-to-cell trafficking of molecules through plasmodesmata. A new mechanism of aluminum toxicity in plants. Plant Physiol. 124: 991-1006 (2000).

Slesak I, Libik M, Karpinska B, Karpinski S, Miszalski Z. The role of hydrogen peroxide in regulation of plant metabolism and cellular signalling in response to environmental stresses. Acta Biochim. Pol. 54: 39-50 (2007).

Smalle J, Vierstra RD. The ubiquitin 26S proteasome proteolytic pathway. Annu. Rev. Plant Biol. 55: 555-590 (2004).

Smolen G, Bender J. Arabidopsis cytochrome P450 cyp83B1 mutations activate the tryptophan biosynthetic pathway. Genetics 160: 323-332 (2002).

Sohlberg JJ, Myrenas M, Kuusk S, Lagercrantz U, Kowalczyk M, Sandberg G, Sundberg E. STY1 regulates auxin homeostasis and affects apical-basal patterning of the Arabidopsis gynoecium. Plant J. 47: 112-123 (2006).

Song H, Zhao R, Fan P, Wang X, Chen X, Li Y. Overexpression of AtHsp90.2, AtHsp90.5 and AtHsp90.7 in Arabidopsis thaliana enhances plant sensitivity to salt and drought stresses. Planta 229: 955-964 (2009).

Sorin C, Bussell JD, Camus I, Ljung K, Kowalczyk M, Geiss G, McKhann H, Garcion C, Vaucheret H, Sandberg G, Bellini C. Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. Plant Cell 17: 1343-1359 (2005).

Sorin C, Negroni L, Balliau T, Corti H, Jacquemot MP, Davanture M, Sandberg G, Zivy M, Bellini C. Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development. Plant Physiol. 140: 349-364 (2006).

Sorin C, Salla-Martret M, Bou-Torrent J, Roig-Villanova I, Martinez-Garcia JF. ATHB4, a regulator of shade avoidance, modulates hormone response in Arabidopsis seedlings. Plant J. 59: 266-277 (2009).

Sottosanto JB, Gelli A, Blumwald E. DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression. Plant J. 40: 752-771 (2004).

Staswick PE, Serban B, Rowe M, Tiryaki I, Maldonado MT, Maldonado MC, Suza W. Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell 17: 616-627 (2005).

Stefanovic A, Ribot C, Rouached H, Wang Y, Chong J, Belbahri L, Delessert S, Poirier Y. Members of the PHO1 gene family show limited functional redundancy in phosphate transfer to the shoot, and are regulated by phosphate deficiency via distinct pathways. Plant J. 50: 982-994 (2007).

Stephenson SE, Dubach D, Lim CM, Mercer JF, La Fontaine S. A single PDZ domain protein interacts with the Menkes copper ATPase, ATP7A: a new protein implicated in copper homeostasis. J. Biol. Chem. 280: 33270-33279 (2005).

Stieger PA, Meyer AD, Kathmann P, Frundt C, Niederhauser I, Barone M, Kuhlemeier C. The orf13 T-DNA gene of Agrobacterium rhizogenes confers meristematic competence to differentiated cells. Plant Physiol. 135: 1798-1808 (2004).

Stingl K, Altendorf K, Bakker EP. Acid survival of Helicobacter pylori: how does urease activity trigger cytoplasmic pH homeostasis? Trends Microbiol. 10: 70-74 (2002).

Strange K, Denton J, Nehrke K. Ste20-type kinases: evolutionarily conserved regulators of ion transport and cell volume. Physiology (Bethesda) 21: 61-68 (2006).

Strompen G, Dettmer J, Stierhof YD, Schumacher K, Jurgens G, Mayer U. Arabidopsis vacuolar H-ATPase subunit E isoform 1 is required for Golgi organization and vacuole function in embryogenesis. Plant J. 41: 125-132 (2005).

Stupnikova I, Benamar A, Tolleter D, Grelet J, Borovskii G, Dorne AJ, Macherel D. Pea seed mitochondria are endowed with a remarkable tolerance to extreme physiological temperatures. Plant Physiol. 140: 326-335 (2006).

Su H, Balderas E, Vera-Estrella R, Golldack D, Quigley F, Zhao C, Pantoja O, Bohnert HJ. Expression of the cation transporter McHKT1 in a halophyte. Plant Mol. Biol. 52: 967-980 (2003).

Su H, Golldack D, Zhao C, Bohnert HJ. The expression of HAK-type K(+) transporters is regulated in response to salinity stress in common ice plant. Plant Physiol. 129: 1482-1493 (2002).

Sun K, Cui Y, Hauser BA. Environmental stress alters genes expression and induces ovule abortion: reactive oxygen species appear as ovules commit to abort. Planta 222: 632-642 (2005).

Sutter JU, Campanoni P, Tyrrell M, Blatt MR. Selective mobility and sensitivity to SNAREs is exhibited by the Arabidopsis KAT1 K+ channel at the plasma membrane. Plant Cell 18: 935-054 (2006).

Sutter JU, Sieben C, Hartel A, Eisenach C, Thiel G, Blatt MR. Abscisic acid triggers the endocytosis of the Arabidopsis KAT1 K(+) channel and its recycling to the plasma membrane. Curr. Biol. 17: 1396-1402 (2007).

Suzuki N, Mittler R. Reactive oxygen species and temperature stresses: a delicate balance between signaling and destruction. Physiol. Plant. 126: 45-51 (2006).

Sweetlove LJ, Heazlewood JL, Herald V, Holtzapffel R, Day DA, Leaver CJ, Millar AH. The impact of oxidative stress on Arabidopsis mitochondria. Plant J. 32: 891-904 (2002).

Symons GM, Reid JB. Brassinosteroids do not undergo long-distance transport in pea. Implications for the regulation of endogenous brassinosteroid levels. Plant Physiol. 135: 2196-2206 (2004).

Szczerba MW, Britto DT, Kronzucker HJ. Rapid, futile K+ cycling and pool-size dynamics define low-affinity potassium transport in barley. Plant Physiol. 141: 1494-1507 (2006).

Sze H, Padmanaban S, Cellier F, Honys D, Cheng NH, Bock KW, Conejero G, Li X, Twell D, Ward JM, Hirschi KD. Expression patterns of a novel AtCHX gene family highlight potential roles in osmotic adjustment and K+ homeostasis in pollen development. Plant Physiol. 136: 2532-2547 (2004).

Tagkopoulos I, Liu YC, Tavazoie S. Predictive behavior within microbial genetic networks. Science 320: 1313-1317 (2008).

Tahiliani AG, Beinlich CJ. Pantothenic acid in health and disease. Vitam. Horm. 46: 165-228 (1991).

Takahashi N, Nakazawa M, Shibata K, Yokota T, Ishikawa A, Suzuki K, Kawashima M, Ichikawa T, Shimada H, Matsui M. shk1-D, a dwarf Arabidopsis mutant caused by activation of the CYP72C1 gene, has altered brassinosteroid levels. Plant J. 42: 13-22 (2005).

Takahashi R, Liu S, Takano T. Cloning and functional comparison of a high-affinity K+ transporter gene PhaHKT1 of salt-tolerant and salt-sensitive reed plants. J. Exp. Bot. 58: 4387-4395 (2007).

Takeda A. Manganese action in brain function. Brain Res. Brain Res. Rev. 41: 79-87 (2003).

Talke IN, Hanikenne M, Kramer U. Zinc-dependent global transcriptional control, transcriptional de-regulation and higher gene copy number for genes in metal homeostasis of the hyperaccumulator Arabidopsis halleri. Plant Physiol. 142: 148-167 (2006).

Tamura T, Hara K, Yamaguchi Y, Koizumi N, Sano H. Osmotic stress tolerance of transgenic tobacco expressing a gene encoding a membrane-located receptor-like protein from tobacco plants. Plant Physiol. 131: 454-462 (2003).

Tanaka K, Asami T, Yoshida S, Nakamura Y, Matsuo T, Okamoto S. Brassinosteroid homeostasis in Arabidopsis is ensured by feedback expressions of multiple genes involved in its metabolism. Plant Physiol. 138: 1117-1125 (2005).

Tanigawa R, Shirokane M, Maeda Si S, Omata T, Tanaka K, Takahashi H. Transcriptional activation of NtcA-dependent promoters of Synechococcus sp. PCC 7942 by 2-oxoglutarate in vitro. Proc. Natl. Acad. Sci. U.S.A. 99: 4251-4255 (2002).

Tantikanjana T, Mikkelsen MD, Hussain M, Halkier BA, Sundaresan V. Functional analysis of the tandem-duplicated P450 genes SPS/BUS/CYP79F1 and CYP79F2 in glucosinolate biosynthesis and plant development by Ds transposition-generated double mutants. Plant Physiol. 135: 840-848 (2004).

Taylor AB, Stoj CS, Ziegler L, Kosman DJ, Hart PJ. The copper-iron connection in biology: structure of the metallo-oxidase Fet3p. Proc. Natl. Acad. Sci. U.S.A. 102: 15459-15464 (2005).

Tennstedt P, Peisker D, Bottcher C, Trampczynska A, Clemens S. Phytochelatin synthesis is essential for the detoxification of excess Zn and contributes significantly to the accumulation of Zn. Plant Physiol. 149: 938-948 (2009).

Thiery L, Leprince AS, Lefebvre D, Ali Ghars M, Debarbieux E, Savoure A. Phospholipase D is a negative regulator of proline biosynthesis in Arabidopsis thaliana. J. Biol. Chem. 279: 14812-14818 (2004).

Thomas S, Fell DA. A control analysis exploration of the role of ATP utilisation in glycolytic-flux control and glycolytic-metabolite-concentration regulation. Eur. J. Biochem. 258: 956-967 (1998).

Tian CE, Muto H, Higuchi K, Matamura T, Tatematsu K, Koshiba T, Yamamoto KT. Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J. 40: 333-343 (2004).

Ticconi CA, Delatorre CA, Lahner B, Salt DE, Abel S. Arabidopsis pdr2 reveals a phosphate-sensitive checkpoint in root development. Plant J. 37: 801-814 (2004).

Timm S, Nunes-Nesi A, Parnik T, Morgenthal K, Wienkoop S, Keerberg O, Weckwerth W, Kleczkowski LA, Fernie AR, Bauwe H. A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis. Plant Cell 20: 2848-2859 (2008).

Tomscha JL, Trull MC, Deikman J, Lynch JP, Guiltinan MJ. Phosphatase under-producer mutants have altered phosphorus relations. Plant Physiol. 135: 334-345 (2004).

Torrecilla I, Leganes F, Bonilla I, Fernandez-Pinas F. Use of recombinant aequorin to study calcium homeostasis and monitor calcium transients in response to heat and cold shock in cyanobacteria. Plant Physiol. 123: 161-176 (2000).

Torrecilla I, Leganes F, Bonilla I, Fernandez-Pinas F. Light-to-dark transitions trigger a transient increase in intracellular Ca2+ modulated by the redox state of the photosynthetic electron transport chain in the cyanobacterium Anabaena sp PCC7120. Plant Cell Environ. 27: 810-819 (2004).

Torres Md M, Sanchez P, Fernandez-Delmond I, Grant M. Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance. Plant J. 33: 665-676 (2003).

Tripathi BN, Gaur JP. Physiological behavior of Scenedesmus sp. during exposure to elevated levels of Cu and Zn and after withdrawal of metal stress. Protoplasma 229: 1-9 (2006).

Tsai HI, Tsai LH, Chen MY, Chou YC. Cholesterol deficiency perturbs actin signaling and glutamate homeostasis in hippocampal astrocytes. Brain Res. 1104: 27-38 (2006).

Tsyganov VE, Belimov AA, Borisov AY, Safronova VI, Georgi M, Dietz KJ, Tikhonovich IA. A chemically induced new pea (Pisum sativum) mutant SGECdt with increased tolerance to, and accumulation of, cadmium. Ann. Bot. (Lond.) 99: 227-237 (2007).

Tyrrell M, Campanoni P, Sutter JU, Pratelli R, Paneque M, Sokolovski S, Blatt MR. Selective targeting of plasma membrane and tonoplast traffic by inhibitory (dominant-negative) SNARE fragments. Plant J. 51: 1099-1115 (2007).

van de Mortel JE, Almar Villanueva L, Schat H, Kwekkeboom J, Coughlan S, Moerland PD, Ver Loren van Themaat E, Koornneef M, Aarts MG. Large expression differences in genes for iron and zinc homeostasis, stress response and lignin biosynthesis distinguish Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiol. 142: 1127-1147 (2006).

van de Mortel JE, Schat H, Moerland PD, Ver Loren van Themaat E, van der Ent S, Blankestijn H, Ghandilyan A, Tsiatsiani S, Aarts MG. Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. Plant Cell Environ. 31: 301-324 (2008).

van der Graaff E, Schwacke R, Schneider A, Desimone M, Flugge UI, Kunze R. Transcription analysis of Arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence. Plant Physiol. 141: 776-792 (2006).

van der Zaal BJ, Neuteboom LW, Pinas JE, Chardonnens AN, Schat H, Verkleij JA, Hooykaas PJ. Overexpression of a novel Arabidopsis gene related to putative zinc-transporter genes from animals can lead to enhanced zinc resistance and accumulation. Plant Physiol. 119: 1047-1055 (1999).

van Dijk TH, van der Sluijs FH, Wiegman CH, Baller JF, Gustafson LA, Burger HJ, Herling AW, Kuipers F, Meijer AJ, Reijngoud DJ. Acute inhibition of hepatic glucose-6-phosphatase does not affect gluconeogenesis but directs gluconeogenic flux toward glycogen in fasted rats. A pharmacological study with the chlorogenic acid derivative S4048. J. Biol. Chem. 276: 25727-25735 (2001).

van Ommen B, Keijer J, Kleemann R, Elliott R, Drevon CA, McArdle H, Gibney M, Muller M. The challenges for molecular nutrition research 2: quantification of the nutritional phenotype. Genes Nutr. 3: 51-59 (2008).

Vanderauwera S, De Block M, Van de Steene N, van de Cotte B, Metzlaff M, Van Breusegem F. Silencing of poly(ADP-ribose) polymerase in plants alters abiotic stress signal transduction. Proc. Natl. Acad. Sci. U.S.A. 104: 15150-15155 (2007).

Varotto C, Maiwald D, Pesaresi P, Jahns P, Salamini F, Leister D. The metal ion transporter IRT1 is necessary for iron homeostasis and efficient photosynthesis in Arabidopsis thaliana. Plant J. 31: 589-599 (2002).

Verbruggen N, Hua XJ, May M, Van Montagu M. Environmental and developmental signals modulate proline homeostasis: evidence for a negative transcriptional regulator. Proc. Natl. Acad. Sci. U.S.A. 93: 8787-8791 (1996).

Verelst W, Kapila J, De Almeida Engler J, Stone JM, Caubergs R, Asard H. Tissue-specific expression and developmental regulation of cytochrome b561 genes in Arabidopsis thaliana and Raphanus sativus. Physiol. Plant. 120: 312-318 (2004).

Vert G, Barberon M, Zelazny E, Seguela M, Briat JF, Curie C. Arabidopsis IRT2 cooperates with the high-affinity iron uptake system to maintain iron homeostasis in root epidermal cells. Planta 229: 1171-1179 (2009).

Vilaine F, Palauqui JC, Amselem J, Kusiak C, Lemoine R, Dinant S. Towards deciphering phloem: a transcriptome analysis of the phloem of Apium graveolens. Plant J. 36: 67-81 (2003).

Vincill ED, Szczyglowski K, Roberts DM. GmN70 and LjN70. Anion transporters of the symbiosome membrane of nodules with a transport preference for nitrate. Plant Physiol. 137: 1435-1444 (2005).

Vitart V, Baxter I, Doerner P, Harper JF. Evidence for a role in growth and salt resistance of a plasma membrane H+-ATPase in the root endodermis. Plant J. 27: 191-201 (2001).

Volkov V, Amtmann A. Thellungiella halophila, a salt-tolerant relative of Arabidopsis thaliana, has specific root ion-channel features supporting K/Na homeostasis under salinity stress. Plant J. 48: 342-353 (2006).

von der Fecht-Bartenbach J, Bogner M, Krebs M, Stierhof YD, Schumacher K, Ludewig U. Function of the anion transporter AtCLC-d in the trans-Golgi network. Plant J. 50: 466-474 (2007).

Voss I, Koelmann M, Wojtera J, Holtgrefe S, Kitzmann C, Backhausen JE, Scheibe R. Knockout of major leaf ferredoxin reveals new redox-regulatory adaptations in Arabidopsis thaliana. Physiol. Plant. 133: 584-598 (2008).

Wan XY, Liu JY. Comparative proteomic analysis reveals an intimate protein network provoked by hydrogen peroxide stress in rice seedling leaves. Mol. Cell. Proteomics 7: 1469-1488 (2008).

Wang B, Davenport RJ, Volkov V, Amtmann A. Low unidirectional sodium influx into root cells restricts net sodium accumulation in Thellungiella halophila, a salt-tolerant relative of Arabidopsis thaliana. J. Exp. Bot. 57: 1161-1170 (2006).

Wang C, Ying S, Huang H, Li K, Wu P, Shou H. Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J. 57: 895-904 (2009).

Wang H, Liu D, Liu C, Zhang A. The pyridoxal kinase gene TaPdxK from wheat complements vitamin B6 synthesis-defective Escherichia coli. J. Plant Physiol. 161: 1053-1060 (2004).

Wang HY, Klatte M, Jakoby M, Baumlein H, Weisshaar B, Bauer P. Iron deficiency-mediated stress regulation of four subgroup Ib BHLH genes in Arabidopsis thaliana. Planta 226: 897-908 (2007).

Wang TB, Gassmann W, Rubio F, Schroeder JI, Glass AD. Rapid up-regulation of HKT1, a high-affinity potassium transporter gene, in roots of barley and wheat following withdrawal of potassium. Plant Physiol. 118: 651-659 (1998).

Wang Y, Ribot C, Rezzonico E, Poirier Y. Structure and expression profile of the Arabidopsis PHO1 gene family indicates a broad role in inorganic phosphate homeostasis. Plant Physiol. 135: 400-411 (2004).

Waters BM, Chu HH, Didonato RJ, Roberts LA, Eisley RB, Lahner B, Salt DE, Walker EL. Mutations in Arabidopsis Yellow Stripe-Like1 (YSL1) and Yellow Stripe-Like3 (YSL3) reveal their roles in metal ion homeostasis and loading of metal ions in seeds. Plant Physiol. 141: 1446-1458 (2006).

Watt NT, Hooper NM. The prion protein and neuronal zinc homeostasis. Trends Biochem. Sci. 28: 406-410 (2003).

Weber M, Harada E, Vess C, Roepenack-Lahaye E, Clemens S. Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors. Plant J. 37: 269-281 (2004).

Weijers D, Sauer M, Meurette O, Friml J, Ljung K, Sandberg G, Hooykaas P, Offringa R. Maintenance of embryonic auxin distribution for apical-basal patterning by PIN-FORMED-dependent auxin transport in Arabidopsis. Plant Cell 17: 2517-2526 (2005).

Weinstein AM. Insights from mathematical modeling of renal tubular function in vivo, in vitro and mathematical analysis of renal tubule function. Exp. Nephrol. 5: 462-468 (1998).

Wettstein M, Peters-Regehr T, Kubitz R, Fischer R, Holneicher C, Monnighoff I, Haussinger D. Release of osmolytes induced by phagocytosis and hormones in rat liver. Am. J. Physiol. Gastrointest. Liver Physiol. 278: G227-G233 (2000).

Wheeler GL, Grant CM. Regulation of redox homeostasis in the yeast Saccharomyces cerevisiae. Physiol. Plant. 120: 12-20 (2004).

White PJ, Davenport RJ. The voltage-independent cation channel in the plasma membrane of wheat roots is permeable to divalent cations and may be involved in cytosolic Ca(2+) homeostasis. Plant Physiol. 130: 1386-1395 (2002).

Williams LE, Mills RF. P(1B)-ATPases--an ancient family of transition metal pumps with diverse functions in plants. Trends Plant Sci. 10: 491-502 (2005).

Wolucka BA, Goossens A, Inze D. Methyl jasmonate stimulates the de novo biosynthesis of vitamin C in plant cell suspensions. J. Exp. Bot. 56: 2527-2538 (2005).

Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K. Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice. Plant Physiol. 135: 1447-1456 (2004).

Woo YM, Park HJ, Su'udi M, Yang JI, Park JJ, Back K, Park YM, An G. Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio. Plant Mol. Biol. 65: 125-136 (2007).

Wu G. Amino acids: metabolism, functions, and nutrition. Amino Acids 37: 1-17 (2009).

Xiao X, Yang F, Zhang S, Korpelainen H, Li C. Physiological and proteomic responses of two contrasting Populus cathayana populations to drought stress. Physiol. Plant. 136: 150-168 (2009).

Xie Y, Ling T, Han Y, Liu K, Zheng Q, Huang L, Yuan X, He Z, Hu B, Fang L, Shen Z, Yang Q, Shen W. Carbon monoxide enhances salt tolerance by nitric oxide-mediated maintenance of ion homeostasis and up-regulation of antioxidant defense in wheat seedling roots. Plant Cell Environ. 31: 1864-1881 (2008).

Xu C, Fan J, Froehlich JE, Awai K, Benning C. Mutation of the TGD1 chloroplast envelope protein affects phosphatidate metabolism in Arabidopsis. Plant Cell 17: 3094-3110 (2005).

Yamaguchi K, Suzuki I, Yamamoto H, Lyukevich A, Bodrova I, Los DA, Piven I, Zinchenko V, Kanehisa M, Murata N. A two-component Mn2+-sensing system negatively regulates expression of the mntCAB operon in Synechocystis. Plant Cell 14: 2901-2913 (2002).

Yamaguchi T, Aharon GS, Sottosanto JB, Blumwald E. Vacuolar Na+/H+ antiporter cation selectivity is regulated by calmodulin from within the vacuole in a Ca2+- and pH-dependent manner. Proc. Natl. Acad. Sci. U.S.A. 102: 16107-16112 (2005).

Yamori W, Noguchi K, Hikosaka K, Terashima I. Cold-tolerant crop species have greater temperature homeostasis of leaf respiration and photosynthesis than cold-sensitive species. Plant Cell Physiol. 50: 203-215 (2009).

Yang ZW, Yang FY. Sensitivity of Ca2+ transport of mitochondria to reactive oxygen species. Biosci. Rep. 17: 557-567 (1997).

Yin L, Wu N, Curtin JC, Qatanani M, Szwergold NR, Reid RA, Waitt GM, Parks DJ, Pearce KH, Wisely GB, Lazar MA. Rev-erbalpha, a heme sensor that coordinates metabolic and circadian pathways. Science 318: 1786-1789 (2007).

Yokoi S, Bressan RA, Hasegawa PM. Salt stress tolerance of plants. JIRCAS Working Report No.23, "Genetic Engineering of Crop Plants for Abiotic Stress" (Iwanaga M, ed.) p. 25-33 (2002).

Yokoi S, Quintero FJ, Cubero B, Ruiz MT, Bressan RA, Hasegawa PM, Pardo JM. Differential expression and function of Arabidopsis thaliana NHX Na+/H+ antiporters in the salt stress response. Plant J. 30: 529-539 (2002).

Yoshida I, Yamagata H, Hirasawa E. Signal transduction controlling the blue- and red-light mediated gene expression of S-adenosylmethionine decarboxylase in Pharbitis nil. J. Exp. Bot. 53: 1525-1529 (2002).

Yuan J, Doucette CD, Fowler WU, Feng XJ, Piazza M, Rabitz HA, Wingreen NS, Rabinowitz JD. Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli. Mol. Syst. Biol. 5: 302 (2009).

Zaragoza-Castells J, Sanchez-Gomez D, Valladares F, Hurry V, Atkin OK. Does growth irradiance affect temperature dependence and thermal acclimation of leaf respiration? Insights from a Mediterranean tree with long-lived leaves. Plant Cell Environ. 30: 820-833 (2007).

Zeng Y, Kermode AR. A gymnosperm ABI3 gene functions in a severe abscisic acid-insensitive mutant of Arabidopsis (abi3-6) to restore the wild-type phenotype and demonstrates a strong synergistic effect with sugar in the inhibition of post-germinative growth. Plant Mol. Biol. 56: 731-746 (2004).

Zhang H, Kim MS, Krishnamachari V, Payton P, Sun Y, Grimson M, Farag MA, Ryu CM, Allen R, Melo IS, Pare PW. Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis. Planta 226: 839-851 (2007).

Zhang WH, Rengel Z. Aluminium induces an increase in cytoplasmic calcium in intact wheat root apical cells. Aust. J. Plant Physiol. 26: 401-409 (1999).

Zhang Y, Wang L, Liu Y, Zhang Q, Wei Q, Zhang W. Nitric oxide enhances salt tolerance in maize seedlings through increasing activities of proton-pump and Na(+)/H(+) antiport in the tonoplast. Planta 224: 545-555 (2006).

Zhao J, Cheng NH, Motes CM, Blancaflor EB, Moore M, Gonzales N, Padmanaban S, Sze H, Ward JM, Hirschi KD. AtCHX13 is a plasma membrane K+ transporter. Plant Physiol. 148: 796-807 (2008).

Zhao N, Guan J, Lin H, Chen F. Molecular cloning and biochemical characterization of indole-3-acetic acid methyltransferase from poplar. Phytochemistry 68: 1537-1544 (2007).

Zhao T, Ling HQ. Effects of pH and nitrogen forms on expression profiles of genes involved in iron homeostasis in tomato. Plant Cell Environ. 30: 518-527 (2007).

Zhou R, Cheng L, Dandekar AM. Down-regulation of sorbitol dehydrogenase and up-regulation of sucrose synthase in shoot tips of the transgenic apple trees with decreased sorbitol synthesis. J. Exp. Bot. 57: 3647-3657 (2006).

Zhu JK. Genetic analysis of plant salt tolerance using Arabidopsis. Plant Physiol. 124: 941-948 (2000).

Zhu JK. Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol. 53: 247-273 (2002).

Zimeri AM, Dhankher OP, McCaig B, Meagher RB. The plant MT1 metallothioneins are stabilized by binding cadmiums and are required for cadmium tolerance and accumulation. Plant Mol. Biol. 58: 839-855 (2005).

Zonia L, Cordeiro S, Tupy J, Feijo JA. Oscillatory chloride efflux at the pollen tube apex has a role in growth and cell volume regulation and is targeted by inositol 3,4,5,6-tetrakisphosphate. Plant Cell 14: 2233-2249 (2002).

Number of references = 509