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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, nitrogen assimilation

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Aeschlimann U, Nosberger J, Edwards PJ, Schneider MK, Richter M, Blum H. Responses of net ecosystem CO2 exchange in managed grassland to long-term CO2 enrichment, N fertilization and plant species. Plant Cell Environ. 28: 823-833 (2005).

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Ahmad A, Abraham G, Abdin MZ. Biochemical evaluation of sulfur and nitrogen assimilation potential of mustard (Brassica juncea L. Czern. & Coss.) under application of slow-release sulfur fertilizer. Appl. Biochem. Biotechnol. 96: 167-172 (2001).

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Aichi M, Omata T. Involvement of NtcB, a LysR family transcription factor, in nitrite activation of the nitrate assimilation operon in the cyanobacterium Synechococcus sp. strain PCC 7942. J. Bacteriol. 179: 4671-4675 (1997).

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Ainsworth EA, Rogers A, Leakey AD, Heady LE, Gibon Y, Stitt M, Schurr U. Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? J. Exp. Bot. 58: 579-591 (2007).

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Araujo WL, Nunes-Nesi A, Trenkamp S, Bunik VI, Fernie AR. Inhibition of 2-oxoglutarate dehydrogenase in potato tuber suggests the enzyme is limiting for respiration and confirms its importance in nitrogen assimilation. Plant Physiol. 148: 1782-1796 (2008).

Armengaud P, Sulpice R, Miller AJ, Stitt M, Amtmann A, Gibon Y. Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiol. 150: 772-785 (2009).

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Atkinson MR, Ninfa AJ. Characterization of the GlnK protein of Escherichia coli. Mol. Microbiol. 32: 301-313 (1999).

Atkinson MR, Ninfa AJ. Role of the GlnK signal transduction protein in the regulation of nitrogen assimilation in Escherichia coli. Mol. Microbiol. 29: 431-447 (1998).

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Avila J, Gonzalez C, Brito N, Machin M F, Perez D, Siverio JM. A second Zn(II)(2)Cys(6) transcriptional factor encoded by the YNA2 gene is indispensable for the transcriptional activation of the genes involved in nitrate assimilation in the yeast Hansenula polymorpha. Yeast 19: 537-544 (2002).

Ballere CL. Circadian maestro leads plant gene expression symphony. Trends Plant Sci. 6: 96-97 (2001).

Bao J, Lee S, Chen C, Zhang X, Zhang Y, Liu S, Clark T, Wang J, Cao M, Yang H, Wang SM, Yu J. Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars. Plant Physiol. 138: 1216-1231 (2005).

Baptist F, Choler P. A simulation of the importance of length of growing season and canopy functional properties on the seasonal gross primary production of temperate alpine meadows. Ann. Bot. (Lond.) 101: 549-559 (2008).

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Besson-Bard A, Gravot A, Richaud P, Auroy P, Duc C, Gaymard F, Taconnat L, Renou JP, Pugin A, Wendehenne D. Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiol. 149: 1302-1315 (2009).

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Blauwkamp TA, Ninfa AJ. Physiological role of the GlnK signal transduction protein of Escherichia coli: survival of nitrogen starvation. Mol. Microbiol. 46: 203-214 (2002).

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Bloom AJ, Smart DR, Nguyen DT, Searles PS. Nitrogen assimilation and growth of wheat under elevated carbon dioxide. Proc. Natl. Acad. Sci. U.S.A. 99: 1730-1735 (2002).

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Britto DT, Kronzucker HJ. Constancy of nitrogen turnover kinetics in the plant cell: insights into the integration of subcellular N fluxes. Planta 213: 175-181 (2001).

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Bruggeman FJ, Boogerd FC, Westerhoff HV. The multifarious short-term regulation of ammonium assimilation of Escherichia coli: dissection using an in silico replica. FEBS J. 272: 1965-1985 (2005).

Brugiere N, Dubois F, Masclaux C, Sangwan RS, Hirel B. Immunolocalization of glutamine synthetase in senescing tobacco (Nicotiana tabacum L.) leaves suggests that ammonia assimilation is progressively shifted to the mesophyll cytosol. Planta 211: 519-527 (2000).

Bum Kim H, Smith CP, Micklefield J, Mavituna F. Metabolic flux analysis for calcium dependent antibiotic (CDA) production in Streptomyces coelicolor. Metab. Eng. 6: 313-325 (2004).

Bungard RA, Wingler A, Morton JD, Andrews M, Press MC, Scholes JD. Ammonium can stimulate nitrate and nitrite reductase in the absence of nitrate in Clematis vitalba. Plant Cell Environ. 22: 859-866 (1999).

Burillo S, Luque I, Fuentes I, Contreras A. Interactions between the nitrogen signal transduction protein PII and N-acetyl glutamate kinase in organisms that perform oxygenic photosynthesis. J. Bacteriol. 186: 3346-3354 (2004).

Calderon J, Martinez LM. Regulation of ammonium ion assimilation enzymes in Neurospora crassa nit-2 and ms-5 mutant strains. Biochem. Genet. 31: 425-439 (1993).

Cali BM, Micca JL, Stewart V. Genetic regulation of nitrate assimilation in Klebsiella pneumoniae M5al. J. Bacteriol. 171: 2666-2672 (1989).

Canovas FM, Avila C, Canton FR, Canas RA, de la Torre F. Ammonium assimilation and amino acid metabolism in conifers. J. Exp. Bot. 58: 2307-2318 (2007).

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Caputo C, Criado MV, Roberts IN, Gelso MA, Barneix AJ. Regulation of glutamine synthetase 1 and amino acids transport in the phloem of young wheat plants. Plant Physiol. Biochem. 47: 335-342 (2009).

Caravaca F, Figueroa D, Barea JM, Azcon-Aguilar C, Roldan A. Effect of mycorrhizal inoculation on nutrient acquisition, gas exchange, and nitrate reductase activity of two Mediterranean-autochthonous shrub species under drought stress. J. Plant Nutr. 27: 57-74 (2004).

Carroll P, Pashley CA, Parish T. Functional analysis of GlnE, an essential adenylyl transferase in Mycobacterium tuberculosis. J. Bacteriol. 190: 4894-4902 (2008).

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