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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, lipid and synthesis

Abbadi A, Domergue F, Bauer J, Napier JA, Welti R, Zahringer U, Cirpus P, Heinz E. Biosynthesis of very-long-chain polyunsaturated fatty acids in transgenic oilseeds: constraints on their accumulation. Plant Cell 16: 2734-2748 (2004).

Abreu EF, Aragao FJ. Isolation and characterization of a myo-inositol-1-phosphate synthase gene from yellow passion fruit (Passiflora edulis f. flavicarpa) expressed during seed development and environmental stress. Ann. Bot. (Lond.) 99: 285-292 (2007).

Adamis PD, Panek AD, Eleutherio EC. Vacuolar compartmentation of the cadmium-glutathione complex protects Saccharomyces cerevisiae from mutagenesis. Toxicol. Lett. 173: 1-7 (2007).

Agusti J, Merelo P, Cercos M, Tadeo FR, Talon M. Ethylene-induced differential gene expression during abscission of citrus leaves. J. Exp. Bot. 59: 2717-2733 (2008).

Aharoni A, Dixit S, Jetter R, Thoenes E, Van Arkel G, Pereira A. The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell 16: 2463-2480 (2004).

Akahoshi N, Kobayashi C, Ishizaki Y, Izumi T, Himi T, Suematsu M, Ishii I. Genetic background conversion ameliorates semi-lethality and permits behavioral analyses in cystathionine beta-synthase-deficient mice, an animal model for hyperhomocysteinemia. Hum. Mol. Genet. 17: 1994-2005 (2008).

Aktas M, Narberhaus F. In vitro characterization of the enzyme properties of the phospholipid N-methyltransferase PmtA from Agrobacterium tumefaciens. J. Bacteriol. 191: 2033-2041 (2009).

Alfonso M, Collados R, Yruela I, Picorel R. Photoinhibition and recovery in a herbicide-resistant mutant from Glycine max (L.) Merr. cell cultures deficient in fatty acid unsaturation. Planta 219: 428-439 (2004).

Ali MB, Thanh NT, Yu KW, Hahn EJ, Paek KP, Lee HL. Induction in the antioxidative systems and lipid peroxidation in suspension culture roots of Panax ginseng induced by oxygen in bioreactors. Plant Sci. 169: 833-841 (2005).

Allakhverdiev SI, Murata N. Salt stress inhibits photosystems II and I in cyanobacteria. Photosynth. Res. 98: 529-539 (2008).

Allen-Baume V, Segui B, Cockcroft S. Current thoughts on the phosphatidylinositol transfer protein family. FEBS Lett. 531: 74-80 (2002).

Altmann T, Kossmann J. Photosynthesis and primary metabolism. Trends Plant Sci. 6: 93-94 (2001).

Anderheggen B, Jassoy C, Waldmann-Laue M, Forster T, Wadle A, Doering T. Taurine improves epidermal barrier properties stressed by surfactants-a role for osmolytes in barrier homeostasis. J. Cosmet. Sci. 57: 1-10 (2006).

Andersen MD, Busk PK, Svendsen I, Moller BL. Cytochromes P-450 from cassava (Manihot esculenta Crantz) catalyzing the first steps in the biosynthesis of the cyanogenic glucosides linamarin and lotaustralin. Cloning, functional expression in Pichia pastoris, and … J. Biol. Chem. 275: 1966-1975 (2000).

Andersson-Gunneras S, Mellerowicz EJ, Love J, Segerman B, Ohmiya Y, Coutinho PM, Nilsson P, Henrissat B, Moritz T, Sundberg B. Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J. 45: 144-165 (2006).

Andreu V, Collados R, Testillano PS, Risueno MD, Picorel R, Alfonso M. In situ molecular identification of the plastid omega-3 fatty acid desaturase FAD7 from soybean: evidence of thylakoid membrane localization. Plant Physiol. 145: 1336-1344 (2007).

Araki W, Wurtman RJ. Control of membrane phosphatidylcholine biosynthesis by diacylglycerol levels in neuronal cells undergoing neurite outgrowth. Proc. Natl. Acad. Sci. U.S.A. 94: 11946-11950 (1997).

Ariizumi T, Hatakeyama K, Hinata K, Sato S, Kato T, Tabata S, Toriyama K. A novel male-sterile mutant of Arabidopsis thaliana, faceless pollen-1, produces pollen with a smooth surface and an acetolysis-sensitive exine. Plant Mol. Biol. 53: 107-116 (2003).

Aronsson H, Schottler MA, Kelly AA, Sundqvist C, Dormann P, Karim S, Jarvis P. Monogalactosyldiacylglycerol deficiency in Arabidopsis thaliana affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiol. 148: 580-592 (2008).

Arora A, Sairam RK, Srivastava GC. Oxidative stress and antioxidative system in plants. Curr. Sci. 82: 1227-1238 (2002).

Asin-Cayuela J, Manas AR, James AM, Smith RA, Murphy MP. Fine-tuning the hydrophobicity of a mitochondria-targeted antioxidant. FEBS Lett. 571: 9-16 (2004).

Athenstaedt K, Weys S, Paltauf F, Daum G. Redundant systems of phosphatidic acid biosynthesis via acylation of glycerol-3-phosphate or dihydroxyacetone phosphate in the yeast Saccharomyces cerevisiae. J. Bacteriol. 181: 1458-1463 (1999).

Attard GS, Templer RH, Smith WS, Hunt AN, Jackowski S. Modulation of CTP:phosphocholine cytidylyltransferase by membrane curvature elastic stress. Proc. Natl. Acad. Sci. U.S.A. 97: 9032-9036 (2000).

Aubert S, Juge C, Boisson AM, Gout E, Bligny R. Metabolic processes sustaining the reviviscence of lichen Xanthoria elegans (Link) in high mountain environments. Planta 226: 1287-1297 (2007).

Austin JR 2nd, Frost E, Vidi PA, Kessler F, Staehelin LA. Plastoglobules are lipoprotein subcompartments of the chloroplast that are permanently coupled to thylakoid membranes and contain biosynthetic enzymes. Plant Cell 18: 1693-1703 (2006).

Awai K, Kakimoto T, Awai C, Kaneko T, Nakamura Y, Takamiya K, Wada H, Ohta H. Comparative genomic analysis revealed a gene for monoglucosyldiacylglycerol synthase, an enzyme for photosynthetic membrane lipid synthesis in cyanobacteria. Plant Physiol. 141: 1120-1127 (2006).

Aziz N, Paiva NL, May GD, Dixon RA. Transcriptome analysis of alfalfa glandular trichomes. Planta 221: 28-38 (2005).

Babiychuk E, Muller F, Eubel H, Braun HP, Frentzen M, Kushnir S. Arabidopsis phosphatidylglycerophosphate synthase 1 is essential for chloroplast differentiation, but is dispensable for mitochondrial function. Plant J. 33: 899-909 (2003).

Bago B, Pfeffer PE, Abubaker J, Jun J, Allen JW, Brouillette J, Douds DD, Lammers PJ, Shachar-Hill Y. Carbon export from arbuscular mycorrhizal roots involves the translocation of carbohydrate as well as lipid. Plant Physiol. 131: 1496-1507 (2003).

Bailly C, Leymarie J, Lehner A, Rousseau S, Come D, Corbineau F. Catalase activity and expression in developing sunflower seeds as related to drying. J. Exp. Bot. 55: 475-483 (2004).

Bakan B, Hamberg M, Perrocheau L, Maume D, Rogniaux H, Tranquet O, Rondeau C, Blein JP, Ponchet M, Marion D. Specific adduction of plant lipid transfer protein by an allene oxide generated by 9-lipoxygenase and allene oxide synthase. J. Biol. Chem. 281: 38981-38988 (2006).

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Bargmann BO, Laxalt AM, ter Riet B, Testerink C, Merquiol E, Mosblech A, Leon-Reyes A, Pieterse CM, Haring MA, Heilmann I, Bartels D, Munnik T. Reassessing the role of phospholipase D in the Arabidopsis wounding response. Plant Cell Environ. 32: 837-850 (2009).

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Bartoli CG, Gomez F, Martinez DE, Guiamet JJ. Mitochondria are the main target for oxidative damage in leaves of wheat (Triticum aestivum L.). J. Exp. Bot. 55: 1663-1669 (2004).

Bates PD, Durrett TP, Ohlrogge JB, Pollard M. Analysis of acyl fluxes through multiple pathways of triacylglycerol synthesis in developing soybean embryos. Plant Physiol. 150: 55-72 (2009).

Bates PD, Ohlrogge JB, Pollard M. Incorporation of newly synthesized fatty acids into cytosolic glycerolipids in pea leaves occurs via acyl editing. J. Biol. Chem. 282: 31206-31216 (2007).

Baud S, Guyon V, Kronenberger J, Wuilleme S, Miquel M, Caboche M, Lepiniec L, Rochat C. Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis. Plant J. 33: 75-86 (2003).

Bazire A, Dheilly A, Diab F, Morin D, Jebbar M, Haras D, Dufour A. Osmotic stress and phosphate limitation alter production of cell-to-cell signal molecules and rhamnolipid biosurfactant by Pseudomonas aeruginosa. FEMS Microbiol. Lett. 253: 125-131 (2005).

Beattie GA, Marcell LM. Effect of alterations in cuticular wax biosynthesis on the physicochemical properties and topography of maize leaf surfaces. Plant Cell Environ. 25: 1-16 (2002).

Becker M, Vincent C, Reid JS. Biosynthesis of (1,3)(1,4)-beta-glucan and (1,3)-beta-glucan in barley (Hordeum vulgare L.). Properties of the membrane-bound glucan synthases. Planta 195: 331-338 (1995).

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Beisson F, Li Y, Bonaventure G, Pollard M, Ohlrogge JB. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 19: 351-368 (2007).

Belkebir A, Paepe RD, Tremolieres A, Aid F, Benhassaine-Kesri G. Sethoxydim affects lipid synthesis and acetyl-CoA carboxylase activity in soybean. J. Exp. Bot. 57: 3553-3562 (2006).

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Bhalerao R, Keskitalo J, Sterky F, Erlandsson R, Bjorkbacka H, Birve SJ, Karlsson J, Gardestrom P, Gustafsson P, Lundeberg J, Jansson S. Gene expression in autumn leaves. Plant Physiol. 131: 430-442 (2003).

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Bolognese CP, McGraw P. The isolation and characterization in yeast of a gene for Arabidopsis S-adenosylmethionine:phospho-ethanolamine N-methyltransferase. Plant Physiol. 124: 1800-1813 (2000).

Bonaventure G, Bao X, Ohlrogge J, Pollard M. Metabolic responses to the reduction in palmitate caused by disruption of the FATB gene in Arabidopsis. Plant Physiol. 135: 1269-1279 (2004).

Bonaventure G, Gfeller A, Proebsting WM, Hortensteiner S, Chetelat A, Martinoia E, Farmer EE. A gain-of-function allele of TPC1 activates oxylipin biogenesis after leaf wounding in Arabidopsis. Plant J. 49: 889-898 (2007).

Bonaventure G, Salas JJ, Pollard MR, Ohlrogge JB. Disruption of the FATB gene in Arabidopsis demonstrates an essential role of saturated fatty acids in plant growth. Plant Cell 15: 1020-1033 (2003).

Boominathan R, Doran PM. Cadmium tolerance and antioxidative defenses in hairy roots of the cadmium hyperaccumulator, Thlaspi caerulescens. Biotechnol. Bioeng. 83: 158-167 (2003).

Borges R, Miguel EC, Dias JMR, da Cunha M, Bressan-Smith RE, de Oliveira JG, de Souza GA. Ultrastructural, physiological and biochemical analyses of chlorate toxicity on rice seedlings. Plant Sci. 166: 1057-1062 (2004).

Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, et al. Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism. Microbiol. Mol. Biol. Rev. 68: 1-108 (2004).

Borsani O, Valpuesta V, Botella MA. Evidence for a role of salicylic acid in the oxidative damage generated by NaCl and osmotic stress in Arabidopsis seedlings. Plant Physiol. 126: 1024-1030 (2001).

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