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HORT640 - Metabolic Plant Physiology
References, glyoxylate or glycerate
Allan WL, Simpson JP, Clark SM, Shelp BJ. Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms. J. Exp. Bot. 59: 2555-2564 (2008).
Anderson LE, Carol AA. Enzyme co-localization in the pea leaf cytosol: 3-P-glycerate kinase, glyceraldehyde-3-P dehydrogenase, triose-P isomerase and aldolase. Plant Sci. 169: 620-628 (2005).
Anderson LE, Wang X, Gibbons JT. Three enzymes of carbon metabolism or their antigenic analogs in pea leaf nuclei. Plant Physiol. 108: 659-667 (1995).
Andrews TJ, Kane HJ. Pyruvate is a by-product of catalysis by ribulosebisphosphate carboxylase/oxygenase. J. Biol. Chem. 266: 9447-9452 (1991).
Arai Y, Hayashi M, Nishimura M. Proteomic analysis of highly purified peroxisomes from etiolated soybean cotyledons. Plant Cell Physiol. 49: 526-539 (2008).
Bago B, Pfeffer PE, Douds Jr DD, Brouillette J, Becard G, Shachar-Hill Y. Carbon metabolism in spores of the arbuscular mycorrhizal fungus Glomus intraradices as revealed by nuclear magnetic resonance spectroscopy. Plant Physiol. 121: 263-272 (1999).
Baker A, Graham IA, Holdsworth M, Smith SM, Theodoulou FL. Chewing the fat: beta-oxidation in signalling and development. Trends Plant Sci. 11: 124-132 (2006).
Bakker BM, Westerhoff HV, Opperdoes FR, Michels PA. Metabolic control analysis of glycolysis in trypanosomes as an approach to improve selectivity and effectiveness of drugs. Mol. Biochem. Parasitol. 106: 1-10 (2000).
Bali M, Thomas SR. A modelling study of feedforward activation in human erythrocyte glycolysis. C. R. Acad. Sci. III 324: 185-199 (2001).
Ballicora MA, Fu Y, Nesbitt NM, Preiss J. ADP-glucose pyrophosphorylase from potato tubers. Site-directed mutagenesis studies of the regulatory sites. Plant Physiol. 118: 265-274 (1998).
Ballicora MA, Laughlin MJ, Fu Y, Okita TW, Barry GF, Preiss J. Adenosine 5'-diphosphate-glucose pyrophosphorylase from potato tuber. Significance of the N terminus of the small subunit for catalytic properties and heat stability. Plant Physiol. 109: 245-251 (1995).
Bao J, Lee S, Chen C, Zhang X, Zhang Y, Liu S, Clark T, Wang J, Cao M, Yang H, Wang SM, Yu J. Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars. Plant Physiol. 138: 1216-1231 (2005).
Bardey V, Vallet C, Robas N, Charpentier B, Thouvenot B, Mougin A, Hajnsdorf E, Regnier P, Springer M, Branlant C. Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli. Mol. Microbiol. 57: 1265-1287 (2005).
Bari R, Kebeish R, Kalamajka R, Rademacher T, Peterhansel C. A glycolate dehydrogenase in the mitochondria of Arabidopsis thaliana. J. Exp. Bot. 55: 623-630 (2004).
Barnes A, Bale J, Constantinidou C, Ashton P, Jones A, Pritchard J. Determining protein identity from sieve element sap in Ricinus communis L. by quadrupole time of flight (Q-TOF) mass spectrometry. J. Exp. Bot. 55: 1473-1481 (2004).
Barnes SA, Knight JS, Gray JC. Alteration of the amount of the chloroplast phosphate translocator in transgenic tobacco affects the distribution of assimilate between starch and sugar. Plant Physiol. 106: 1123-1129 (1994).
Basmaison O, Rolland MO, Cochat P, Bozon D. Identification of 5 novel mutations in the AGXT gene. Hum. Mutat. 15: 577 (2000).
Bassingthwaighte JB. The modelling of a primitive 'sustainable' conservative cell. Phil. Trans. Roy. Soc. Lond. B. Math. Eng. Sci. 359: 1055-1072 (2001).
Bazan JF, Fletterick RJ, Pilkis SJ. Evolution of a bifunctional enzyme: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Proc. Natl. Acad. Sci. U.S.A. 86: 9642-9646 (1989).
Beggs JD, Fewson CA. Regulation of synthesis of benzyl alcohol dehydrogenase in Acinetobacter calcoaceticus NCIB8250. J. Gen. Microbiol. 103: 127-140 (1977).
Bell JK, Pease PJ, Bell JE, Grant GA, Banaszak LJ. De-regulation of D-3-phosphoglycerate dehydrogenase by domain removal. Eur. J. Biochem. 269: 4176-4184 (2002).
Bennett FI, Jackson AA. Glycine is not formed through the amino transferase reaction in human or rat placenta. Placenta 19: 329-331 (1998).
Beudeker RF, Tabita FR. Control of photorespiratory glycolate metabolism in an oxygen-resistant mutant of Chlorella sorokiniana. J. Bacteriol. 155: 650-656 (1983).
Biemelt S, Hajirezaei MR, Melzer M, Albrecht G, Sonnewald U. Sucrose synthase activity does not restrict glycolysis in roots of transgenic potato plants under hypoxic conditions. Planta 210: 41-49 (1999).
Birdsey GM, Danpure CJ. Evolution of alanine:glyoxylate aminotransferase intracellular targeting: structural and functional analysis of the guinea pig gene. Biochem. J. 331: 49-60 (1998).
Bligny R, Gardestrom P, Roby C, Douce R. P-31 NMR studies of spinach leaves and their chloroplasts. J. Biol. Chem. 265: 1319-1326 (1990).
Boldt R, Edner C, Kolukisaoglu U, Hagemann M, Weckwerth W, Wienkoop S, Morgenthal K, Bauwe H. D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17: 2413-2420 (2005).
Bolten CJ, Heinzle E, Müller R, Wittmann C. Investigation of the central carbon metabolism of Sorangium cellulosum: metabolic network reconstruction and quantification of pathway fluxes. J. Microbiol. Biotechnol. 19: 23-36 (2009).
Borchert S, Harborth J, Schunemann D, Hoferichter P, Heldt HW. Studies of the enzymic capacities and transport properties of pea root plastids. Plant Physiol. 101: 303-312 (1993).
Bourgis F, Botha FC, Mani S, Hiten FN, Rigden DJ, Verbruggen N. Characterization and functional investigation of an Arabidopsis cDNA encoding a homologue to the d-PGMase superfamily. J. Exp. Bot. 56: 1129-1142 (2005).
Bowen TL, Union J, Tumbula DL, Whitman WB. Cloning and phylogenetic analysis of the genes encoding acetohydroxyacid synthase from the archaeon Methanococcus aeolicus. Gene 188: 77-84 (1997).
Brice DC, Bryant JA, Dambrauskas G, Drury SC, Littlechild JA. Cloning and expression of cytosolic phosphoglycerate kinase from pea (Pisum sativum L.). J. Exp. Bot. 55: 955-956 (2004).
Brickner DG, Harada JJ, Olsen LJ. Protein transport into higher plant peroxisomes. In vitro import assay provides evidence for receptor involvement. Plant Physiol. 113: 1213-1221 (1997).
Brock BL, Wilkinson DA, King J. Glyoxylate aminotansferases from oat leaves. Can. J. Biochem. 48: 486-492 (1970).
Bunkelmann JR, Trelease RN. Ascorbate peroxidase. A prominent membrane protein in oilseed glyoxysomes. Plant Physiol. 110: 589-598 (1996).
Calik P, Akbay A. Mass flux balance-based model and metabolic flux analysis for collagen synthesis in the fibrogenesis process of human liver. Med. Hypotheses 55: 5-14 (2000).
Calik P, Calik G, Taka S, Ozdamar TH. Metabolic flux analysis for serine alkaline protease fermentation by Bacillus licheniformis in a defined medium: effects of the oxygen transfer rate. Biotechnol. Bioeng. 64: 151-167 (1999).
Canovas M, Bernal V, Sevilla A, Iborra JL. Salt stress effects on the central and carnitine metabolisms of Escherichia coli. Biotechnol. Bioeng. 96: 722-737 (2007).
Canovas M, Bernal V, Torroglosa T, Ramirez JL, Iborra JL. Link between primary and secondary metabolism in the biotransformation of trimethylammonium compounds by Escherichia coli. Biotechnol. Bioeng. 84: 686-699 (2003).
Canovas M, Sevilla A, Bernal V, Leal R, Iborra JL. Role of energetic coenzyme pools in the production of L-carnitine by Escherichia coli. Metab. Eng. 8: 603-618 (2006).
Carpe AI, Smith IK. Serine-glyoxylate aminotransferase from kidney bean (Phaseolus vulgaris). II. The reverse reactions. Biochim. Biophys. Acta 370: 96-101 (1974).
Cegelski L, Schaefer J. NMR determination of photorespiration in intact leaves using in vivo 13CO2 labeling. J. Magn. Reson. 178: 1-10 (2006).
Cegelski L, Schaefer J. Glycine metabolism in intact leaves by in vivo 13C and 15N labeling. J. Biol. Chem. 280: 39238-39245 (2005).
Chang YY, Wang AY, Cronan JE Jr. Molecular cloning, DNA sequencing, and biochemical analyses of Escherichia coli glyoxylate carboligase. An enzyme of the acetohydroxy acid synthase-pyruvate oxidase family. J. Biol. Chem. 268: 3911-3919 (1993).
Chao G, Shen J, Tseng CP, Park SJ, Gunsalus RP. Aerobic regulation of isocitrate dehydrogenase gene (icd) expression in Escherichia coli by the arcA and fnr gene products. J. Bacteriol. 179: 4299-4304 (1997).
Chapple CCS, Glover JR, Ellis BE. Purification and characterization of methionine:glyoxylate aminotransferase from Brassica carinata and Brassica napus. Plant Physiol. 94: 1887-1896 (1990).
Chen BY, Janes HW. Multiple forms of ADP-glucose pyrophosphorylase from tomato fruit. Plant Physiol. 113: 235-241 (1997).
Chen LS, Qi YP, Smith BR, Liu XH. Aluminum-induced decrease in CO2 assimilation in citrus seedlings is unaccompanied by decreased activities of key enzymes involved in CO2 assimilation. Tree Physiol. 25: 317-324 (2005).
Chen S, Hajirezaei M, Peisker M, Tschiersch H, Sonnewald U, Bornke F. Decreased sucrose-6-phosphate phosphatase level in transgenic tobacco inhibits photosynthesis, alters carbohydrate partitioning, and reduces growth. Planta 221: 479-492 (2005).
Chen ZH, Walker RP, Acheson RM, Tecsi LI, Wingler A, Lea PJ, Leegood RC. Are isocitrate lyase and phosphoenolpyruvate carboxykinase involved in gluconeogenesis during senescence of barley leaves and cucumber cotyledons? Plant Cell Physiol. 41: 960-967 (2000).
Cheng L, Zhou R, Reidel EJ, Sharkey TD, Dandekar AM. Antisense inhibition of sorbitol synthesis leads to up-regulation of starch synthesis without altering CO2 assimilation in apple leaves. Planta 220: 767-776 (2005).
Chia TY, Pike MJ, Rawsthorne S. Storage oil breakdown during embryo development of Brassica napus (L.). J. Exp. Bot. 56: 1285-1296 (2005).
Chistoserdova L, Lidstrom ME. Identification and mutation of a gene required for glycerate kinase activity from a facultative methylotroph, Methylobacterium extorquens AM1. J. Bacteriol. 179: 4946-4948 (1997).
Chistoserdova LV, Lidstrom ME. Cloning, mutagenesis, and physiological effect of a hydroxypyruvate reductase gene from Methylobacterium extorquens AM1. J. Bacteriol. 174: 71-77 (1992).
Chistoserdova LV, Lidstrom ME. Genetics of the serine cycle in Methylobacterium extorquens AM1: identification of sgaA and mtdA and sequences of sgaA, hprA, and mtdA. J. Bacteriol. 176: 1957-1968 (1994).
Chistoserdova LV, Lidstrom ME. Purification and characterization of hydroxypyruvate reductase from the facultative methylotroph Methylobacterium extorquens AM1. J. Bacteriol. 173: 7228-7232 (1991).
Clark SM, Di Leo R, Dhanoa PK, Van Cauwenberghe OR, Mullen RT, Shelp BJ. Biochemical characterization, mitochondrial localization, expression, and potential functions for an Arabidopsis gamma-aminobutyrate transaminase that utilizes both pyruvate and glyoxylate. J. Exp. Bot. 60: 1743-1757 (2009).
Clark SM, Di Leo R, Van Cauwenberghe OR, Mullen RT, Shelp BJ. Subcellular localization and expression of multiple tomato gamma-aminobutyrate transaminases that utilize both pyruvate and glyoxylate. J. Exp. Bot. 60: 3255-3267 (2009).
Collins N, Merrett MJ. The localization of glycollate-pathway enzymes in Euglena. Biochem. J. 148: 321-328 (1975).
Cooper AJ. Oxime formation between alpha-keto acids and L-canaline. Arch. Biochem. Biophys. 233: 603-610 (1984).
Cornah JE, Germain V, Ward JL, Beale MH, Smith SM. Lipid utilization, gluconeogenesis and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase. J. Biol. Chem. 279: 42916-42923 (2004).
Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR. Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release. Plant Physiol. 148: 786-795 (2008).
Daniel RM, Danson MJ, Eisenthal R. The temperature optima of enzymes: a new perspective on an old phenomenon. Trends Biochem. Sci. 26: 223-225 (2001).
Danpure CJ. Primary hyperoxaluria type 1 and peroxisome-to-mitochondrion mistargeting of alanine:glyoxylate aminotransferase. Biochimie 75: 309-315 (1993).
Danpure CJ. The molecular basis of alanine: glyoxylate aminotransferase mistargeting: the most common single cause of primary hyperoxaluria type 1. J. Nephrol. 11: 8-12 (1998).
Danpure CJ, Purdue PE, Fryer P, Griffiths S, Allsop J, Lumb MJ, Guttridge KM, Jennings PR, Scheinman JI, Mauer SM, et al. Enzymological and mutational analysis of a complex primary hyperoxaluria type 1 phenotype involving alanine:glyoxylate aminotransferase peroxisome-to-mitochondrion mistargeting and intraperoxisomal aggregation. Am. J. Hum. Genet. 53: 417-432 (1993).
de Graaf AA, Mahle M, Mollney M, Wiechert W, Stahmann P, Sahm H. Determination of full 13C isotopomer distributions for metabolic flux analysis using heteronuclear spin echo difference NMR spectroscopy. J. Biotechnol. 77: 25-35 (2000).
de Graaf AA, Striegel K, Wittig RM, Laufer B, Schmitz G, Wiechert W, Sprenger GA, Sahm H. Metabolic state of Zymomonas mobilis in glucose-, fructose-, and xylose-fed continuous cultures as analysed by 13C- and 31P-NMR spectroscopy. Arch. Microbiol. 171: 371-385 (1999).
de Koning TJ, Klomp LWJ. Serine-deficiency syndromes. Curr. Opin. Neurol. 17: 197-204 (2004).
de Kraker JW, Luck K, Textor S, Tokuhisa JG, Gershenzon J. Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine. Plant Physiol. 143: 970-986 (2007).
Devi MT, Raghavendra AS. Partial reduction in activities of photorespiratory enzymes in C3-C4 intermediates of Alternanthera and Parthenium. J. Exp. Bot. 44: 779-784 (1993).
Devi MT, Raghavendra AS. Formation of photorespiratory glycolate and glyoxylate in leaf disks of C3-C4 intermediates: reduced sensitivity to external bicarbonate. Photosynthetica 30: 455-463 (1994).
Devi MT, Rajagopalan AV, Raghavendra AS. Purification and properties of glycolate oxidase from plants with different photosynthetic pathways: Distinctness of C-4 enzyme from that of a C-3 species and a C-3-C-4 intermediate. Photosynth. Res. 47: 231-238 (1996).
Doan DN, Rudi H, Olsen OA. The allosterically unregulated isoform of ADP-glucose pyrophosphorylase from barley endosperm is the most likely source of ADP-glucose incorporated into endosperm starch. Plant Physiol. 121: 965-975 (1999).
Douce R, Neuburger M. Biochemical dissection of photorespiration. Curr. Opin. Plant Biol. 2: 214-222 (1999).
Durmus Tekir S, Cakir T, O Ulgen K. Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches. Comput. Biol. Chem. 30: 327-338 (2006).
Eastmond PJ, Jones RL. Hormonal regulation of gluconeogenesis in cereal aleurone is strongly cultivar-dependent and gibberellin action involves SLENDER1 but not GAMYB. Plant J. 44: 483-493 (2005).
Eccleston VS, Ohlrogge JB. Expression of lauroyl-acyl carrier protein thioesterase in Brassica napus seeds induces pathways for both fatty acid oxidation and biosynthesis and implies a set point for triacylglycerol accumulation. Plant Cell 10: 613-622 (1998).
Eckardt NA. Peroxisomal citrate synthase provides exit route from fatty acid metabolism in oilseeds. Plant Cell 17: 1863-1865 (2005).
Eckardt NA. Photorespiration revisited. Plant Cell 17: 2139-2141 (2005).
Eisenhut M, Huege J, Schwarz D, Bauwe H, Kopka J, Hagemann M. Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol. 148: 2109-2120 (2008).
Eisenhut M, Kahlon S, Hasse D, Ewald R, Lieman-Hurwitz J, Ogawa T, Ruth W, Bauwe H, Kaplan A, Hagemann M. The plant-like C2 glycolate pathway and the bacterial-like glycerate cycle cooperate in phosphoglycolate metabolism in cyanobacteria. Plant Physiol. 142: 333-342 (2006).
Eisenhut M, Ruth W, Haimovich M, Bauwe H, Kaplan A, Hagemann M. The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc. Natl. Acad. Sci. U.S.A. 105: 17199-17204 (2008).
Eisenhut M, von Wobeser EA, Jonas L, Schubert H, Ibelings BW, Bauwe H, Matthijs HC, Hagemann M. Long-term response toward inorganic carbon limitation in wild type and glycolate turnover mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiol. 144: 1946-1959 (2007).
Eisenreich W, Strauss G, Werz U, Fuchs G, Bacher A. Retrobiosynthetic analysis of carbon fixation in the phototrophic eubacterium Chloroflexus aurantiacus. Eur. J. Biochem. 215: 619-632 (1993).
el-Mansi EM, Dawson GC, Bryce CF. Steady-state modelling of metabolic flux between the tricarboxylic acid cycle and the glyoxylate bypass in Escherichia coli. Comput. Appl. Biosci. 10: 295-299 (1994).
Elmansi EMT, MacKintosh C, Duncan K, Holms WH, Nimmo HG. Molecular cloning and over-expression of the glyoxylate bypass operon from Escherichia coli ML308. Biochem. J. 242: 661-665 (1987).
Enser U, Heber U. Metabolic regulation by pH gradients. Inhibition of photosynthesis by indirect proton transfer across the chloroplast envelope. Biochim. Biophys. Acta 592: 577-591 (1980).
Epelbaum S, LaRossa RA, VanDyk TK, Elkayam T, Chipman DM, Barak Z. Branched-chain amino acid biosynthesis in Salmonella typhimurium: a quantitative analysis. J. Bacteriol. 180: 4056-4067 (1998).
Escher CL, Widmer F. Lipid mobilization and gluconeogenesis in plants: do glyoxylate cycle enzyme activities constitute a real cycle? A hypothesis. Biol. Chem. 378: 803-813 (1997).
Fahnenstich H, Scarpeci TE, Valle EM, Flugge UI, Maurino VG. Generation of hydrogen peroxide in chloroplasts of Arabidopsis thaliana overexpressing glycolate oxidase as an inducible system to study oxidative stress. Plant Physiol. 148: 719-729 (2008).
Farmer WR, Liao JC. Reduction of aerobic acetate production by Escherichia coli. Appl. Environ. Microbiol. 63: 3205-3210 (1997).
Fath A, Bethke P, Beligni V, Jones R. Active oxygen and cell death in cereal aleurone cells. J. Exp. Bot. 53: 1273-1282 (2002).
Fell DA, Snell K. Control analysis of mammalian serine biosynthesis. Feedback inhibition on the final step. Biochem. J. 256: 97-101 (1988).
Fell DA, Wagner A. The small world of metabolism. Nat. Biotechnol. 18: 1121-1122 (2000).
Fernie AR, Roessner U, Trethewey RN, Willmitzer L. The contribution of plastidial phosphoglucomutase to the control of starch synthesis within the potato tuber. Planta 213: 418-426 (2001).
Fernie AR, Roscher A, Ratcliffe RG, Kruger NJ. Fructose 2,6-bisphosphate activates pyrophosphate: fructose-6-phosphate 1-phosphotransferase and increases triose phosphate to hexose phosphate cycling in heterotrophic cells. Planta 212: 250-263 (2001).
Flugge UI. Phosphate translocators in plastids. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 27-45 (1999).
Forsthoefel NR, Cushman MA, Cushman JC. Posttranscriptional and posttranslational control of enolase expression in the facultative Crassulacean acid metabolism plant Mesembryanthemum crystallinum L. Plant Physiol. 108: 1185-1195 (1995).
Fox TC, Mujer CV, Andrews DL, Williams AS, Cobb BG, Kennedy RA, Rumpho ME. Identification and gene expression of anaerobically induced enolase in Echinochloa phyllopogon and Echinochloa crus-pavonis. Plant Physiol. 109: 433-443 (1995).
Fridlyand LE. Independent changes of ATP/ADP or delta pH could cause oscillations in photosynthesis. J. Theor. Biol. 193: 739-741 (1998).
Fridlyand LE, Backhausen JE, Holtgrefe S, Kitzmann C, Scheibe R. Quantitative evaluation of the rate of 3-phosphoglycerate reduction in chloroplasts. Plant Cell Physiol. 38: 1177-1186 (1997).
Fridlyand LE, Backhausen JE, Scheibe R. Homeostatic regulation upon changes of enzyme activities in the Calvin cycle as an example for general mechanisms of flux control. What can we expect from transgenic plants? Photosynth. Res. 61: 227-239 (1999).
Fridlyand LE, Scheibe R. Regulation of the Calvin cycle for CO2 fixation as an example for general control mechanisms in metabolic cycles. Biosystems 51: 79-93 (1999).
Fridlyand LE, Scheibe R. Controlled distribution of electrons between acceptors in chloroplasts: a theoretical consideration Biochim. Biophys. Acta 1413: 31-42 (1999).
Frueauf JB, Ballicora MA, Preiss J. ADP-glucose pyrophosphorylase from potato tuber: site-directed mutagenesis of homologous aspartic acid residues in the small and large subunits. Plant J. 33: 503-511 (2003).
Fu Y, Ballicora MA, Preiss J. Mutagenesis of the glucose-1-phosphate-binding site of potato tuber ADP-glucose pyrophosphorylase. Plant Physiol. 117: 989-996 (1998).
Funai T, Ichiyama A. Fidelity of translation initiation of mRNA for the precursor of rat mitochondrial serine:pyruvate/alanine:glyoxylate aminotransferase. J. Biochem. (Tokyo) 117: 1008-1016 (1995).
Furumoto T, Hata S, Izui K. cDNA cloning and characterization of maize phosphoenolpyruvate carboxykinase, a bundle sheath cell-specific enzyme. Plant Mol. Biol. 41: 301-311 (1999).
Galas E, Florianowicz T. L-Glutamate-glyoxylate aminotransferase in Lactobacillus plantarum. Acta Microbiol. Pol. [B] 7: 243-252 (1975).
Gao L, Mejias R, Echevarria M, Lopez-Barneo J. Induction of the glucose-6-phosphate dehydrogenase gene expression by chronic hypoxia in PC12 cells. FEBS Lett. 569: 256-260 (2004).
Gao Z, Loescher WH. NADPH supply and mannitol biosynthesis. Characterization, cloning, and regulation of the non-reversible glyceraldehyde-3-phosphate dehydrogenase in celery leaves. Plant Physiol. 124: 321-330 (2000).
Geigenberger P, Fernie AR, Gibon Y, Christ M, Stitt M. Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Biol. Chem. 381: 723-740 (2000).
Geigenberger P, Geiger M, Stitt M. High-temperature perturbation of starch synthesis is attributable to inhibition of ADP-glucose pyrophosphorylase by decreased levels of glycerate-3-phosphate in growing potato tubers. Plant Physiol. 117: 1307-1316 (1998).
Geigenberger P, Hajirezaei M, Geiger M, Deiting U, Sonnewald U, Stitt M. Overexpression of pyrophosphatase leads to increased sucrose degradation and starch synthesis, increased activities of enzymes for sucrose-starch interconversions, and increased levels of nucleotides in growing potato tubers. Planta 205: 428-437 (1998).
Geigenberger P, Regierer B, Lytovchenko A, Leisse A, Schauer N, Springer F, Kossmann J, Fernie AR. Heterologous expression of a ketohexokinase in potato plants leads to inhibited rates of photosynthesis, severe growth retardation and abnormal leaf development. Planta 218: 569-578 (2004).
Geigenberger P, Reimholz R, Geiger M, Merlo L, Canale V, Stitt M. Regulation of sucrose and starch metabolism in potato tubers in response to short-term water deficit. Planta 201: 502-518 (1997).
Geiger M, Haake V, Ludewig F, Sonnewald U, Stitt M. The nitrate and ammonium nitrate supply have a major influence on the response of photosynthesis, carbon metabolism, nitrogen metabolism and growth to elevated carbon dioxide in tobacco. Plant Cell Environ. 22: 1177-1199 (1999).
Germain V, Rylott EL, Larson TR, Sherson SM, Bechtold N, Carde JP, Bryce JH, Graham IA, Smith SM. Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings. Plant J. 28: 1-12 (2001).
Giege P, Heazlewood JL, Roessner-Tunali U, Millar AH, Fernie AR, Leaver CJ, Sweetlove LJ. Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell 15: 2140-2151 (2003).
Giersch C. Determining elasticities from multiple measurements of flux rates and metabolite concentrations. Application of the multiple modulation method to a reconstituted pathway. Eur. J. Biochem. 227: 194-201 (1995).
Glawischnig E, Gierl A, Tomas A, Bacher A, Eisenreich W. Retrobiosynthetic nuclear magnetic resonance analysis of amino acid biosynthesis and intermediary metabolism. metabolic flux in developing maize kernels. Plant Physiol. 125: 1178-1186 (2001).
Goldberg JD, Yoshida T, Brick P. Crystal structure of a NAD-dependent D-glycerate dehydrogenase at 2.4 A resolution. J. Mol. Biol. 236: 1123-1140 (1994).
Gomes RA, Miranda HV, Silva MS, Graca G, Coelho AV, Ferreira AE, Cordeiro C, Freire AP. Yeast protein glycation in vivo by methylglyoxal. FEBS J. 273: 5273-5287 (2006).
Gomez-Casati DF, Cortassa S, Aon MA, Iglesias AA. Ultrasensitive behavior in the synthesis of storage polysaccharides in cyanobacteria. Planta 216: 969-975 (2003).
Gomez-Casati DF, Iglesias AA. ADP-glucose pyrophosphorylase from wheat endosperm. Purification and characterization of an enzyme with novel regulatory properties. Planta 214: 428-434 (2002).
Gonzalez A, Rodriguez L, Folch J, Soberon M, Olivera H. Coordinated regulation of ammonium assimilation and carbon catabolism by glyoxylate in Saccharomyces cerevisiae. J. Gen. Microbiol. 133: 2497-2501 (1987).
Gonzalez B, de Graaf A, Renaud M, Sahm H. Dynamic in vivo (31)P nuclear magnetic resonance study of Saccharomyces cerevisiae in glucose-limited chemostat culture during the aerobic-anaerobic shift. Yeast 16: 483-497 (2000).
Gonzalez-Moro MB, Loureiro-Beldarrain I, Estavillo JM, Dunabeitia MK, Munoz-Rueda A, Gonzalez-Murua C. Effect of photorespiratory C2 acids on CO2 assimilation, PSII photochemistry and the xanthophyll cycle in maize. Photosynth. Res. 78: 161-173 (2003).
Goude R, Renaud S, Bonnassie S, Bernard T, Blanco C. Glutamine, glutamate, and alpha-glucosylglycerate are the major osmotic solutes accumulated by Erwinia chrysanthemi strain 3937. Appl. Environ. Microbiol. 70: 6535-6541 (2004).
Graciet E, Lebreton S, Camadro JM, Gontero B. Characterization of native and recombinant A4 glyceraldehyde 3-phosphate dehydrogenase. Kinetic evidence for confromation changes upon association with the small protein CP12. Eur. J. Biochem. 270: 129-136 (2003).
Graham IA. Seed storage oil mobilization. Annu. Rev. Plant Biol. 59: 115-142 (2008).
Grant N, Onda Y, Kakizaki Y, Ito K, Watling J, Robinson S. Two cys or not two cys? That is the question; alternative oxidase in the thermogenic plant sacred Lotus. Plant Physiol. 150: 987-995 (2009).
Greene TW, Woodbury RL, Okita TW. Aspartic acid 413 is important for the normal allosteric functioning of ADP-glucose pyrophosphorylase. Plant Physiol. 112: 1315-1320 (1996).
Greenler JM, Sloan JS, Schwartz BW, Becker WM. Isolation, characterization and sequence analysis of a full-length cDNA clone encoding NADH-dependent hydroxypyruvate reductase from cucumber. Plant Mol. Biol. 13: 139-150 (1989).
Grotkjaer T, Christakopoulos P, Nielsen J, Olsson L. Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains. Metab. Eng. 7: 437-444 (2005).
Guex N, Henry H, Flach J, Richter H, Widmer F. Glyoxysomal malate dehydrogenase and malate synthase from soybean cotyledons (Glycine max L.): enzyme association, antibody production and cDNA cloning. Planta 197: 369-375 (1995).
Haake V, Zrenner R, Sonnewald U, Stitt M. A moderate decrease of plastid aldolase activity inhibits photosynthesis, alters the levels of sugars and starch, and inhibits growth of potato plants. Plant J. 14: 147-157 (1998).
Hagishita T, Yoshida T, Izumi Y, Mitsunaga T. Cloning and expression of the gene for serine-glyoxylate aminotransferase from an obligate methylotroph Hyphomicrobium methylovorum GM2. Eur. J. Biochem. 241: 1-5 (1996).
Hajirezaei MR, Biemelt S, Peisker M, Lytovchenko A, Fernie AR, Sonnewald U. The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. J. Exp. Bot. 57: 2363-2377 (2006).
Han Q, Hanyong LY. Comparative characterization of Aedes 3-hydroxykynurenine transaminase/alanine glyoxylate transaminase and Drosophila serine pyruvate aminotransferase. FEBS Lett. 527: 199-204 (2002).
Han Q, Robinson H, Gao YG, Vogelaar N, Wilson SR, Rizzi M, Li J. Crystal structures of Aedes aegypti alanine glyoxylate aminotransferase. J. Biol. Chem. 281: 37175-37182 (2006).
Hannaert V, Albert MA, Rigden DJ, da Silva Giotto MT, Thiemann O, Garratt RC, Van Roy J, Opperdoes FR, Michels PA. Kinetic characterization, structure modelling studies and crystallization of Trypanosoma brucei enolase. Eur. J. Biochem. 270: 3205-3213 (2003).
Harpel MR, Larimer FW, Hartman FC. Multifaceted roles of Lys166 of ribulose-bisphosphate carboxylase/oxygenase as discerned by product analysis and chemical rescue of site-directed mutants. Biochemistry 41: 1390-1397 (2002).
Harrison-Lowe N, Olsen LJ. Isolation of glyoxysomes from pumpkin cotyledons. Curr. Protoc. Cell Biol. Chapter 3: Unit 3.19 (2006).
Hartung W, Ratcliffe RG. Utilization of glycine and serine as nitrogen sources in the roots of Zea mays and Chamaegigas intrepidus. J. Exp. Bot. 53: 2305-2314 (2002).
Hasemann CA, Istvan ES, Uyeda K, Deisenhofer J. The crystal structure of the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase reveals distinct domain homologies. Structure 4: 1017-1029 (1996).
Hausler RE, Bailey KJ, Lea PJ, Leegood RC. Control of photosynthesis in barley mutants with reduced activities of glutamine synthetase and glutamate synthase. 3. Aspects of glyoxylate metabolism and effects of glyoxylate on the activation state of ribulose-1,5-bisphosphate carboxylase/oxygenase. Planta 200: 388-396 (1996).
Hausler RE, Baur B, Scharte J, Teichmann T, Eicks M, Fischer KL, Flugge UI, Schubert S, Weber A, Fischer K. Plastidic metabolite transporters and their physiological functions in the inducible Crassulacean acid metabolism plant Mesembryanthemum crystallinum. Plant J. 24: 285-296 (2000).
Hausler RE, Lea PJ, Leegood RC. Control of photosynthesis in barley leaves with reduced activities of glutamine synthetase or glutamate synthase. 2. Control of electron transport and CO2 assimilation. Planta 194: 418-435 (1994).
Hausler RE, Rademacher T, Li J, Lipka V, Fischer KL, Schubert S, Kreuzaler F, Hirsch HJ. Single and double overexpression of C4-cycle genes had differential effects on the pattern of endogenous enzymes, attenuation of photorespiration and on contents of UV protectants in transgenic potato and tobacco plants. J. Exp. Bot. 52: 1785-1803 (2001).
Hausler RE, Schlieben NH, Schulz B, Flugge UI. Compensation of decreased triose phosphate/phosphate translocator activity by accelerated starch turnover and glucose transport in transgenic tobacco. Planta 204: 366-376 (1998).
Havir EA. Inactivation of serine:glyoxylate and glutamate:glyoxylate aminotransferases from tobacco leaves by glyoxylate in the presence of ammonium ion. Plant Physiol. 80: 473-478 (1986).
Hayashi M, De Bellis L, Alpi A, Nishimura M. Cytosolic aconitase participates in the glyoxylate cycle in etiolated pumpkin cotyledons. Plant Cell Physiol. 36: 669-680 (1995).
Hayashi M, Nito K, Takei-Hoshi R, Yagi M, Kondo M, Suenaga A, Yamaya T, Nishimura M. Ped3p is a peroxisomal ATP-binding cassette transporter that might supply substrates for fatty acid beta-oxidation. Plant Cell Physiol. 43: 1-11 (2002).
Hemmler R, Becker T, Schleiff E, Bolter B, Stahl T, Soll J, Gotze TA, Braams S, Wagner R. Molecular properties of Oep21, an ATP-regulated anion-selective solute channel from the outer chloroplast membrane. J. Biol. Chem. 281: 12020-12029 (2006).
Hendrickson L, Sharwood R, Ludwig M, Whitney SM, Badger MR, von Caemmerer S. The effects of Rubisco activase on C4 photosynthesis and metabolism at high temperature. J. Exp. Bot. 59: 1789-1798 (2008).
Hess WR, Muller A, Nagy F, Borner T. Ribosome-deficient plastids affect transcription of light-induced nuclear genes: genetic evidence for a plastid-derived signal. Mol. Gen. Genet. 242: 305-312 (1994).
Heupel R, Heldt HW. Protein organization in the matrix of leaf peroxisomes. A multi-enzyme complex involved in photorespiratory metabolism. Eur. J. Biochem. 220: 165-172 (1994).
Ho CL, Noji M, Saito K. Plastidic pathway of serine biosynthesis. Molecular cloning and expression of 3-phosphoserine phosphatase from Arabidopsis thaliana. J. Biol. Chem. 274: 11007-11012 (1999).
Ho CL, Noji M, Saito M, Saito K. Regulation of serine biosynthesis in Arabidopsis. Crucial role of plastidic 3-phosphoglycerate dehydrogenase in non-photosynthetic tissues. J. Biol. Chem. 274: 397-402 (1999).
Ho CL, Noji M, Saito M, Yamazaki M, Saito K. Molecular characterization of plastidic phosphoserine aminotransferase in serine biosynthesis from Arabidopsis. Plant J. 16: 443-452 (1998).
Ho CL, Saito K. Molecular biology of the plastidic phosphorylated serine biosynthetic pathway in Arabidopsis thaliana. Amino Acids 20: 243-259 (2001).
Hoang CV, Chapman KD. Regulation of carbonic anhydrase gene expression in cotyledons of cotton (Gossypium hirsutum L.) seedlings during post-germinative growth. Plant Mol. Biol. 49: 449-458 (2002).
Holaday AS, Martindale W, Alred R, Brooks AL, Leegood RC. Changes in activities of enzymes of carbon metabolism in leaves during exposure of plants to low temperature. Plant Physiol. 98: 1105-1114 (1992).
Holbrook JD, Birdsey GM, Yang Z, Bruford MW, Danpure CJ. Molecular adaptation of alanine:glyoxylate aminotransferase targeting in primates. Mol. Biol. Evol. 17: 387-400 (2000).
Huang S, Sirikhachornkit A, Faris JD, Su X, Gill BS, Haselkorn R, Gornicki P. Phylogenetic analysis of the acetyl-CoA carboxylase and 3-phosphoglycerate kinase loci in wheat and other grasses. Plant Mol. Biol. 48: 805-820 (2002).
Huerta-Saquero A, Calderon-Flores A, Diaz-Villasenor A, Du Pont G, Duran S. Regulation of transcription and activity of Rhizobium etli glutaminase A. Biochim. Biophys. Acta 1673: 201-207 (2004).
Hurry V, Strand A, Furbank R, Stitt M. The role of inorganic phosphate in the development of freezing tolerance and the acclimatization of photosynthesis to low temperature is revealed by the pho mutants of Arabidopsis thaliana. Plant J. 24: 383-396 (2000).
Igamberdiev AU, Bykova NV, Gardestrom P. Involvement of cyanide-resistant and rotenone-insensitive pathways of mitochondrial electron transport during oxidation of glycine in higher plants. FEBS Lett. 412: 265-269 (1997).
Igamberdiev AU, Bykova NV, Kleczkowski LA. Origins and metabolism of formate in higher plants. Plant Physiol. Biochem. 37: 503-513 (1999).
Igamberdiev AU, Bykova NV, Lea PJ, Gardestrom P. The role of photorespiration in redox and energy balance of photosynthetic plant cells: A study with a barley mutant deficient in glycine decarboxylase. Physiol. Plant. 111: 427-438 (2001).
Igarashi D, Miwa T, Seki M, Kobayashi M, Kato T, Tabata S, Shinozaki K, Ohsumi C. Identification of photorespiratory glutamate:glyoxylate aminotransferase (GGAT) gene in Arabidopsis. Plant J. 33: 975-987 (2003).
Igarashi D, Tsuchida H, Miyao M, Ohsumi C. Glutamate:glyoxylate aminotransferase (GGAT) modulates amino acid contents during photorespiration. Plant Physiol. 142: 901-910 (2006).
Iglesias AA, Charng YY, Ball S, Preiss J. Characterization of the kinetic, regulatory, and structural properties of ADP-glucose pyrophosphorylase from Chlamydomonas reinhardtii. Plant Physiol. 104: 1287-1294 (1994).
Ireland RJ, Joy KW. Purification and properties of an asparagine aminotransferase from Pisum sativum leaves. Arch. Biochem. Biophys. 223: 291-296 (1983).
Ishikawa K, Kaneko E, Ichiyama A. Pyridoxal 5'-phosphate binding of a recombinant rat serine: pyruvate/alanine:glyoxylate aminotransferase. J. Biochem. (Tokyo) 119: 970-978 (1996).
Ismail I, De Bellis L, Alpi A, Smith SM. Expression of glyoxylate cycle genes in cucumber roots responds to sugar supply and can be activated by shading or defoliation of the shoot. Plant Mol. Biol. 35: 633-640 (1997).
Iuchi S, Lin EC. arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc. Natl. Acad. Sci. U.S.A. 85: 1888-1892 (1988).
Izumi Y, Yoshida T, Kanzaki H, Toki S, Miyazaki SS, Yamada H. Purification and characterization of hydroxypyruvate reductase from a serine-producing methylotroph, Hyphomicrobium methylovorum GM2. Eur. J. Biochem. 190: 279-284 (1990).
Izumi Y, Yoshida T, Yamada H. Purification and characterization of serine-glyoxylate aminotransferase from a serine-producing methylotroph, Hyphomicrobium methylovorum GM2. Eur. J. Biochem. 190: 285-290 (1990).
Jenner HL, Winning BM, Millar AH, Tomlinson KL, Leaver CJ, Hill SA. NAD malic enzyme and the control of carbohydrate metabolism in potato tubers. Plant Physiol. 126: 1139-1149 (2001).
Jones JM, Morrell JC, Gould SJ. Identification and characterization of HAOX1, HAOX2, and HAOX3, three human peroxisomal 2-hydroxy acid oxidases. J. Biol. Chem. 275: 12590-12597 (2000).
Kaplun A, Binshtein E, Vyazmensky M, Steinmetz A, Barak Z, Chipman DM, Tittmann K, Shaanan B. Glyoxylate carboligase lacks the canonical active site glutamate of thiamine-dependent enzymes. Nat. Chem. Biol. 4: 113-118 (2008).
Kasten B, Buck F, Nuske J, Reski R. Cytokinin affects nuclear- and plastome-encoded energy-converting plastid enzymes. Planta 201: 261-272 (1997).
Kazakov AE, Rodionov DA, Alm E, Arkin AP, Dubchak I, Gelfand MS. Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. J. Bacteriol. 191: 52-64 (2009).
Kebeish R, Niessen M, Thiruveedhi K, Bari R, Hirsch HJ, Rosenkranz R, Stabler N, Schonfeld B, Kreuzaler F, Peterhansel C. Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana. Nat. Biotechnol. 25: 593-599 (2007).
Kendziorek M, Paszkowski A. Properties of serine:glyoxylate aminotransferase purified from Arabidopsis thaliana leaves. Acta Biochim. Biophys. Sin. (Shanghai) 40: 102-110 (2008).
Khan MS. Engineering photorespiration in chloroplasts: a novel strategy for increasing biomass production. Trends Biotechnol. 25: 437-440 (2007).
Kim DJ, Smith SM. Expression of a single gene encoding microbody NAD-malate dehydrogenase during glyoxysome and peroxisome development in cucumber. Plant Mol. Biol. 26: 1833-1841 (1994).
Kitayama M, Togasaki RK. Purification and cDNA isolation of chloroplastic phosphoglycerate kinase from Chlamydomonas reinhardtii. Plant Physiol. 107: 393-400 (1995).
Kleczkowski LA, Randall DD. Purification and characterization of a novel NADPH(NADH)-dependent hydroxypyruvate reductase from spinach leaves. Comparison of immunological properties of leaf hydroxypyruvate reductases. Biochem. J. 250: 145-152 (1988).
Kleczkowski LA, Randall DD, Blevins DG. Purification and characterization of a novel NADPH(NADH)-dependent glyoxylate reductase from spinach leaves. Comparison of immunological properties of leaf glyoxylate reductase and hydroxypyruvate reductase. Biochem. J. 239: 653-659 (1986).
Koebmann B, Solem C, Jensen PR. Control analysis of the importance of phosphoglycerate enolase for metabolic fluxes in Lactococcus lactis subsp. lactis IL1403. Syst. Biol. (Stevenage) 153: 346-349 (2006).
Koksharova O, Schubert M, Shestakov S, Cerff R. Genetic and biochemical evidence for distinct key functions of two highly divergent GAPDH genes in catabolic and anabolic carbon flow of the cyanobacterium Synechocystis sp. PCC 6803. Plant Mol. Biol. 36: 183-194 (1998).
Kromer JO, Sorgenfrei O, Klopprogge K, Heinzle E, Wittmann C. In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome. J. Bacteriol. 186: 1769-1784 (2004).
Kromer S, Gardestrom P, Samuelsson G. Regulation of the supply of oxaloacetate for mitochondrial metabolism via phosphoenolpyruvate carboxylase in barley leaf protoplasts. II. Effects of metabolites on PEPC activity at different activation states of the protein. Biochim. Biophys. Acta 1289: 351-361 (1996).
Kroth PG, Chiovitti A, Gruber A, Martin-Jezequel V, Mock T, Parker MS, Stanley MS, Kaplan A, Caron L, Weber T, Maheswari U, Armbrust EV, Bowler C. A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis. PLoS ONE 3: e1426 (2008).
Kukreja N, Singh BP, Arora N, Gaur SN, Sridhara S. Identification of Epicoccum purpurascens allergens by two-dimensional immunoblotting and mass spectrometry. Immunobiology 213: 65-73 (2008).
Kunze M, Kragler F, Binder M, Hartig A, Gurvitz A. Targeting of malate synthase 1 to the peroxisomes of Saccharomyces cerevisiae cells depends on growth on oleic acid medium. Eur. J. Biochem. 269: 915-922 (2002).
Lacourt I, Duplessis S, Abba S, Bonfante P, Martin F. Isolation and characterization of differentially expressed genes in the mycelium and fruit body of Tuber borchii. Appl. Environ. Microbiol. 68: 4574-4582 (2002).
Lain-Guelbenzu B, Cardenas J, Munoz-Blanco J. Purification and properties of L-alanine aminotransferase from Chlamydomonas reinhardtii. Eur. J. Biochem. 202: 881-887 (1991).
Laisk A, Loreto F. Determining photosynthetic parameters from leaf CO2 exchange and chlorophyll fluorescence (ribulose-1,5-bisphosphate carboxylase/oxygenase specificity factor, dark respiration in the light, excitation distribution between photosystems, alternative … Plant Physiol. 110: 903-912 (1996).
Lammers PJ, Jun J, Abubaker J, Arreola R, Gopalan A, Bago B, Hernandez-Sebastia C, Allen JW, Douds DD, Pfeffer PE, Shachar-Hill Y. The glyoxylate cycle in an arbuscular mycorrhizal fungus. Carbon flux and gene expression. Plant Physiol. 127: 1287-1298 (2001).
Lamosa P, Martins LO, Da Costa MS, Santos H. Effects of temperature, salinity, and medium composition on compatible solute accumulation by Thermococcus spp. Appl. Environ. Microbiol. 64: 3591-3598 (1998).
Larimer FW, Harpel MR, Hartman FC. Beta-elimination of phosphate from reaction intermediates by site-directed mutants of ribulose-bisphosphate carboxylase/oxygenase. J. Biol. Chem. 269: 11114-11120 (1994).
Larson TR, Edgell T, Byrne J, Dehesh K, Graham IA. Acyl CoA profiles of transgenic plants that accumulate medium-chain fatty acids indicate inefficient storage lipid synthesis in developing oilseeds. Plant J. 32: 519-527 (2002).
Law RH, Rowley MJ, Mackay IR, Corner B. Expression in Saccharomyces cerevisiae of antigenically and enzymatically active recombinant glutamic acid decarboxylase. J. Biotechnol. 61: 57-68 (1998).
Lawand S, Dorne AJ, Long D, Coupland G, Mache R, Carol P. Arabidopsis A BOUT DE SOUFFLE, which is homologous with mammalian carnitine acyl carrier, is required for postembryonic growth in the light. Plant Cell 14: 2161-2173 (2002).
Lebreton S, Andreescu S, Graciet E, Gontero B. Mapping of the interaction site of CP12 with glyceraldehyde-3-phosphate dehydrogenase from Chlamydomonas reinhardtii. Functional consequences for glyceraldehyde-3-phosphate dehydrogenase. FEBS J. 273: 3358-3369 (2006).
Lee IS, Muragaki Y, Ideguchi T, Hase T, Tsuji M, Ooshima A, Okuno E, Kido R. Molecular cloning and sequencing of a cDNA encoding alanine-glyoxylate aminotransferase 2 from rat kidney. J. Biochem. (Tokyo) 117: 856-862 (1995).
Lee IS, Takio K, Kido R, Titani K. Purification and amino- and carboxyl-terminal amino acid sequences of alanine-glyoxylate transaminase 1 from human liver. J. Biochem. (Tokyo) 116: 12-17 (1994).
Leegood RC, Lea PJ, Adcock MD, Hausler RE. The regulation and control of photorespiration. J. Exp. Bot. 46: 1397-1414 (1995).
Leegood RC, von Caemmerer S. Regulation of photosynthetic carbon assimilation in leaves of C3-C4 intermediate species of Moricandia and Flaveria. Planta 192: 232-238 (1994).
Lemuth K, Hardiman T, Winter S, Pfeiffer D, Keller MA, Lange S, Reuss M, Schmid RD, Siemann-Herzberg M. Global transcription and metabolic flux analysis of Escherichia coli in glucose-limited fed-batch cultivations. Appl. Environ. Microbiol. 74: 7002-7015 (2008).
Li M, Ho PY, Yao S, Shimizu K. Effect of lpdA gene knockout on the metabolism in Escherichia coli based on enzyme activities, intracellular metabolite concentrations and metabolic flux analysis by (13)C-labeling experiments. J. Biotechnol. 122: 254-266 (2006).
Li XX, Franceschi VR. Distribution of peroxisomes and glycolate metabolism in relation to calcium oxalate formation in Lemna minor L. Eur. J. Cell Biol. 51: 9-16 (1990).
Liang Z, Yu C, Huang AH. Conversion of glycerate to serine in intact spinach leaf peroxisomes. Arch. Biochem. Biophys. 233: 393-401 (1984).
Liao JC, Hou SY, Chao YP. Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnol. Bioeng. 52: 129-140 (1996).
Liepman AH, Olsen LI. Genomic analysis of aminotransferases in Arabidopsis thaliana. Crit. Rev. Plant Sci. 23: 73-89 (2004).
Liepman AH, Olsen LJ. Peroxisomal alanine:glyoxylate aminotransferase (AGT1) is a photorespiratory enzyme with multiple substrates in Arabidopsis thaliana. Plant J. 25: 487-498 (2001).
Liepman AH, Olsen LJ. Alanine aminotransferase homologs catalyze the glutamate:glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis. Plant Physiol. 131: 215-227 (2003).
Lin H, Bennett GN, San KY. Metabolic engineering of aerobic succinate production systems in Escherichia coli to improve process productivity and achieve the maximum theoretical succinate yield. Metab. Eng. 7: 116-127 (2005).
Lin KC, Bushnell WR, Smith AG, Szabo LJ. Temporal accumulation patterns of defence response gene transcripts in relation to resistant reactions in oat inoculated with Puccinia graminis. Physiol. Mol. Plant Pathol. 52: 95-114 (1998).
Lin SS, Manchester JK, Gordon JI. Enhanced gluconeogenesis and increased energy storage as hallmarks of aging in Saccharomyces cerevisiae. J. Biol. Chem. 276: 36000-36007 (2001).
Loef I, Stitt M, Geigenberger P. Orotate leads to a specific increase in uridine nucleotide levels and a stimulation of sucrose degradation and starch synthesis in discs from growing potato tubers. Planta 209: 314-323 (1999).
Loef I, Stitt M, Geigenberger P. Increased levels of adenine nucleotides modify the interaction between starch synthesis and respiration when adenine is supplied to discs from growing potato tubers. Planta 212: 782-791 (2001).
Lopes MS, Araus JL. Comparative genomic and physiological analysis of nutrient response to NH4+, NH4+:NO3- and NO3- in barley seedlings. Physiol. Plant. 134: 134-150 (2008).
Lumb MJ, Drake AF, Danpure CJ. Effect of N-terminal alpha-helix formation on the dimerization and intracellular targeting of alanine:glyoxylate aminotransferase. J. Biol. Chem. 274: 20587-20596 (1999).
Lumb MJ, Purdue PE, Danpure CJ. Molecular evolution of alanine/glyoxylate aminotransferase 1 intracellular targeting. Analysis of the feline gene. Eur. J. Biochem. 221: 53-62 (1994).
Lytovchenko A, Bieberich K, Willmitzer L, Fernie AR. Carbon assimilation and metabolism in potato leaves deficient in plastidial phosphoglucomutase. Planta 215: 802-811 (2002).
Maaheimo H, Fiaux J, Cakar ZP, Bailey JE, Sauer U, Szyperski T. Central carbon metabolism of Saccharomyces cerevisiae explored by biosynthetic fractional C-13 labeling of common amino acids. Eur. J. Biochem. 268: 2464-2479 (2001).
Markham JE, Kruger NJ. Kinetic properties of bifunctional 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase from spinach leaves. Eur. J. Biochem. 269: 1267-1277 (2002).
Maroco JP, Ku MSB, Edwards GE. Utilization of O2 in the metabolic optimization of C4 photosynthesis. Plant Cell Environ. 23: 115-121 (2000).
Marri L, Trost P, Pupillo P, Sparla F. Reconstitution and properties of the recombinant glyceraldehyde-3-phosphate dehydrogenase/CP12/phosphoribulokinase supramolecular complex of Arabidopsis. Plant Physiol. 139: 1433-1443 (2005).
Martinez I, Zhu J, Lin H, Bennett GN, San KY. Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways. Metab. Eng. 10: 352-359 (2008).
Martins LO, Carreto LS, Da Costa MS, Santos H. New compatible solutes related to di-myo-inositol-phosphate in members of the order Thermotogales. J. Bacteriol. 178: 5644-5651 (1996).
Maul DM, Schuster SM. A comparison of the cytosolic and mitochondrial forms of asparagine/glyoxylate aminotransferase. Arch. Biochem. Biophys. 251: 577-584 (1986).
Mazarei M, Lennon KA, Puthoff DP, Rodermel SR, Baum TJ. Expression of an Arabidopsis phosphoglycerate mutase homologue is localized to apical meristems, regulated by hormones, and induced by sedentary plant-parasitic nematodes. Plant Mol. Biol. 53: 513-530 (2003).
Meijer S, Otero J, Olivares R, Andersen MR, Olsson L, Nielsen J. Overexpression of isocitrate lyase-glyoxylate bypass influence on metabolism in Aspergillus niger. Metab. Eng. 11: 107-116 (2009).
Meister M, Agostino A, Hatch MD. The roles of malate and aspartate in C4 photosynthetic metabolism of Flaveria bidentis (L). Planta 199: 262-269 (1996).
Melcher K, Rose M, Kunzler M, Braus GH, Entian KD. Molecular analysis of the yeast SER1 gene encoding 3-phosphoserine aminotransferase: regulation by general control and serine repression. Curr. Genet. 27: 501-508 (1995).
Mellema S, Eichenberger W, Rawyler A, Suter M, Tadege M, Kuhlemeier C. The ethanolic fermentation pathway supports respiration and lipid biosynthesis in tobacco pollen. Plant J. 30: 329-336 (2002).
Minatogawa Y, Tone S, Allsop J, Purdue PE, Takada Y, Danpur CJ, Kido R. A serine-to-phenylalanine substitution leads to loss of alanine:glyoxylate aminotransferase catalytic activity and immunoreactivity in a patient with primary hyperoxaluria type 1. Hum. Mol. Genet. 1: 643-644 (1992).
Monschau N, Stahmann KP, Sahm H, McNeil JB, Bognar AL. Identification of Saccharomyces cerevisiae GLY1 as a threonine aldolase: a key enzyme in glycine biosynthesis. FEMS Microbiol. Lett. 150: 55-60 (1997).
Morell MK, Wilkin JM, Kane HJ, Andrews TJ. Side reactions catalyzed by ribulose-bisphosphate carboxylase in the presence and absence of small subunits. J. Biol. Chem. 272: 5445-5451 (1997).
Moreno-Sanchez R, Encalada R, Marin-Hernandez A, Saavedra E. Experimental validation of metabolic pathway modeling. An illustration with glycotic segments from Entamoeba histolytica. FEBS J. 275: 3454-3469 (2008).
Motley A, Lumb MJ, Oatey PB, Jennings PR, De Zoysa PA, Wanders RJ, Tabak HF, Danpure CJ. Mammalian alanine/glyoxylate aminotransferase 1 is imported into peroxisomes via the PTS1 translocation pathway. J. Cell Biol. 131: 95-109 (1995).
Muller U, van Assema F, Gunsior M, Orf S, Kremer S, Schipper D, Wagemans A, Townsend CA, Sonke T, Bovenberg R, Wubbolts M. Metabolic engineering of the E. coli L-phenylalanine pathway for the production of D-phenylglycine (D-Phg). Metab. Eng. 8: 196-208 (2006).
Muller V, Spanheimer R, Santos H. Stress response by solute accumulation in archaea. Curr. Opin. Microbiol. 8: 729-736 (2005).
Mulquiney PJ, Bubb WA, Kuchel PW. Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations in vivo kinetic characterization of 2,3-bisphosphoglycerate synthase/phosphatase using C-13 and P-31 NMR. Biochem. J. 342: 567-580 (1999).
Mulquiney PJ, Kuchel PW. Model of the pH-dependence of the concentrations of complexes involving metabolites, haemoglobin and magnesium ions in the human erythrocyte. Eur. J. Biochem. 245: 71-83 (1997).
Mulquiney PJ, Kuchel PW. Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: equations and parameter refinement. Biochem. J. 342: 581-596 (1999).
Mulquiney PJ, Kuchel PW. Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: computer simulation and Metabolic Control Analysis. Biochem. J. 342: 597-604 (1999).
Mulquiney PJ, Kuchel PW. Free magnesium-ion concentration in erythrocytes by 31P NMR: the effect of metabolite-haemoglobin interactions. NMR Biomed. 10: 129-137 (1997).
Munoz A, Piedras P, Aguilar M, Pineda M. Urea is a product of ureidoglycolate degradation in chickpea. Purification and characterization of the ureidoglycolate urea-lyase. Plant Physiol. 125: 828-834 (2001).
Naik MS, Singh P. Reaction between succinate and glyoxylate as a possible source of CO2 during photorespiration in wheat leaves. FEBS Lett. 111: 277-280 (1980).
Nakamura Y, Tolbert NE. Serine: glyoxylate, alanine:glyoxylate, and glutamate:glyoxylate aminotransferase reactions in peroxisomes from spinach leaves. J. Biol. Chem. 258: 7631-7638 (1983).
Neves AR, Ramos A, Nunes MC, Kleerebezem M, Hugenholtz J, de Vos WM, Almeida J, Santos H. In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis. Biotechnol. Bioeng. 64: 200-212 (1999).
Niessen M, Thiruveedhi K, Rosenkranz R, Kebeish R, Hirsch HJ, Kreuzaler F, Peterhansel C. Mitochondrial glycolate oxidation contributes to photorespiration in higher plants. J. Exp. Bot. 58: 2709-2715 (2007).
Nimmo HG, Borthwick AC, Elmansi EMT, HolmsWH, MacKintosh C, Nimmo GA. Regulation of the enzymes at the branchpoint between the citric acid cycle and the glyoxylate bypass in Escherichia coli. Biochem. Soc. Symp. 54: 93-101 (1987).
Nishiyama K, Funai T, Katafuchi R, Hattori F, Onoyama K, Ichiyama A. Primary hyperoxaluria type I due to a point mutation of T to C in the coding region of the serine:pyruvate aminotransferase gene. Biochem. Biophys. Res. Commun. 176: 1093-1099 (1991).
Noctor G, Foyer CH. Homeostasis of adenylate status during photosynthesis in a fluctuating environment. J. Exp. Bot. 51: 347-356 (2000).
Noguchi T, Fujiwara S. Identification of mammalian aminotransferases utilizing glyoxylate or pyruvate as amino acceptor. Peroxisomal and mitochondrial asparagine aminotransferase. J. Biol. Chem. 263: 182-186 (1988).
Noguchi T, Fujiwara S. Development of glutamate:glyoxylate aminotransferase in the cotyledons of cucumber (Cucumis sativus) seedlings. Biochem. J. 201: 209-214 (1982).
Noguchi T, Hayashi S. Plant leaf alanine: 2-oxoglutarate aminotransferase. Peroxisomal localization and identity with glutamate:glyoxylate aminotransferase. Biochem. J. 195: 235-239 (1981).
Noguchi T, Hayashi S. Peroxisomal localization and properties of tryptophan aminotransferase in plant leaves. J. Biol. Chem. 255: 2267-2269 (1980).
Noronha SB, Yeh HJ, Spande TF, Shiloach J. Investigation of the TCA cycle and the glyoxylate shunt in Escherichia coli BL21 and JM109 using 13C-NMR/MS. Biotechnol. Bioeng. 68: 316-327 (2000).
Nosticzius A. Role of formaldehyde in direct formation of glycine and serine in bean leaves. Acta Biol. Hung. 49: 193-199 (1998).
Oda T, Nishiyama K, Ichiyama A. Characterization and sequence analysis of rat serine:pyruvate/alanine:glyoxylate aminotransferase gene. Genomics 17: 59-65 (1993).
Oda T, Uchida C, Miura S. Mitochondrial targeting signal-induced conformational change and repression of the peroxisomal targeting signal of the precursor for rat liver serine:pyruvate/alanine:glyoxylate aminotransferase. J. Biochem. (Tokyo) 127: 665-671 (2000).
Ogur M, Liu TN, Cheung I, Paulavicius I, Wales W, Mehnert D, Blaise D. "Active" one-carbon generation in Saccharomyces cerevisiae. J. Bacteriol. 129: 926-933 (1977).
Oh MK, Rohlin L, Kao KC, Liao JC. Global expression profiling of acetate-grown Escherichia coli. J. Biol. Chem. 277: 13175-13183 (2002).
Okuno E, Minatogawa Y, Nakamura M, Kamoda N, Nakanishi J, Makino M, Kido R. Crystallization and characterization of human liver kynurenine:glyoxylate aminotransferase. Identity with alanine:glyoxylate aminotransferase and serine:pyruvate aminotransferase. Biochem. J. 189: 581-590 (1980).
Oliver DJ, Zelitch I. Increasing photosynthesis by inhibiting photorespiration with glyoxylate. Science 196: 1450-1451 (1977).
Orzechowski S, Socha-Hanc J, Paszkowski A. Alanine aminotransferase and glycine aminotransferase from maize (Zea mays L.) leaves. Acta Biochim. Pol. 46: 447-457 (1999).
Overlach S, Diekmann W, Raschke K. Phosphate translocator of isolated guard-cell chloroplasts from Pisum sativum L. transports glucose-6-phosphate. Plant Physiol. 101: 1201-1207 (1993).
Pais TM, Lamosa P, dos Santos W, Legall J, Turner DL, Santos H. Structural determinants of protein stabilization by solutes. The important of the hairpin loop in rubredoxins. FEBS J. 272: 999-1011 (2005).
Palma JM, Jimenez A, Sandalio LM, Corpas FJ, Lundqvist M, Gomez M, Sevilla F, del Río LA. Antioxidative enzymes from chloroplasts, mitochondria, and peroxisomes during leaf senescence of nodulated pea plants. J. Exp. Bot. 57: 1747-1758 (2006).
Parker R, Flowers TJ, Moore AL, Harpham NV. An accurate and reproducible method for proteome profiling of the effects of salt stress in the rice leaf lamina. J. Exp. Bot. 57: 1109-1118 (2006).
Pastore D, Trono D, Laus MN, Di Fonzo N, Passarella S. Alternative oxidase in durum wheat mitochondria. Activation by pyruvate, hydroxypyruvate and glyoxylate and physiological role. Plant Cell Physiol. 42: 1373-1382 (2001).
Paszkowski A. Some properties of serine: glyoxylate aminotransferase from rye seedlings (Secale cereale L.). Acta Biochim. Pol. 38: 437-448 (1991).
Paszkowski A, Niedzielska A. Glutamate:glyoxylate aminotransferase from the seedlings of rye (Secale cereale L.). Acta Biochim. Pol. 36: 17-29 (1989).
Paszkowski A, Niedzielska A. Serine:glyoxylate aminotransferase from the seedlings of rye (Secale cereale L.). Acta Biochim. Pol. 37: 277-282 (1990).
Peters-Wendisch PG, Wendisch VF, de Graaf AA, Eikmanns BJ, Sahm H. C3-carboxylation as an anaplerotic reaction in phosphoenolpyruvate carboxylase-deficient Corynebacterium glutamicum. Arch. Microbiol. 165: 387-396 (1996).
Pettersson G, Ryde-Pettersson U. Model studies of the regulation of the Calvin photosynthesis cycle by cytosolic metabolites. Biomed. Biochim. Acta 49: 723-732 (1990).
Phue JN, Noronha SB, Hattacharyya R, Wolfe AJ, Shiloach J.. Glucose metabolism at high density growth of E. coli B and E. coli K: differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses. Biotechnol. Bioeng. 90: 805-820 (2005).
Phue JN, Shiloach J. Impact of dissolved oxygen concentration on acetate accumulation and physiology of E. coli BL21, evaluating transcription levels of key genes at different dissolved oxygen conditions. Metab. Eng. 7: 353-363 (2005).
Pitson SM, Mendz GL, Srinivasan S, Hazell SL. The tricarboxylic acid cycle of Helicobacter pylori. Eur. J. Biochem. 260: 258-267 (1999).
Podesta FE, Plaxton WC. Activation of cytosolic pyruvate kinase by polyethylene glycol. Plant Physiol. 103: 285-288 (1993).
Pracharoenwattana I, Cornah JE, Smith SM. Arabidopsis peroxisomal citrate synthase is required for fatty acid respiration and seed germination. Plant Cell 17: 2037-2048 (2005).
Pracharoenwattana I, Cornah JE, Smith SM. Arabidopsis peroxisomal malate dehydrogenase functions in beta-oxidation but not in the glyoxylate cycle. Plant J. 50: 381-390 (2007).
Pramanik J, Keasling JD. Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 56: 398-421 (1997).
Preiss J. ADPglucose pyrophosphorylase: basic science and applications in biotechnology. Biotechnol. Annu. Rev. 2: 259-279 (1996).
Price GD, Evans JR, von Caemmerer S, Yu JW, Badger MR. Specific reduction of chloroplast glyceraldehyde-3-phosphate dehydrogenase activity by antisense RNA reduces CO2 assimilation via a reduction in ribulose bisphosphate regeneration in transgenic tobacco plants. Planta 195: 369-378 (1995).
Pritchard SL, Charlton WL, Baker A, Graham IA. Germination and storage reserve mobilization are regulated independently in Arabidopsis. Plant J. 31: 639-647 (2002).
Pua EC, Chandramouli S, Han P, Liu P. Malate synthase gene expression during fruit ripening of Cavendish banana (Musa acuminata cv. Williams). J. Exp. Bot. 54: 309-316 (2003).
Pucar D, Janssen E, Dzeja PP, Juranic N, Macura S, Wieringa B, Terzic A. Compromised energetics in the adenylate kinase AK1 gene knockout heart under metabolic stress. J. Biol. Chem. 275: 41424-41429 (2000).
Purdue PE, Lumb MJ, Danpure CJ. Molecular evolution of alanine/glyoxylate aminotransferase 1 intracellular targeting. Analysis of the marmoset and rabbit genes. Eur. J. Biochem. 207: 757-766 (1992).
Purdue PE, Lumb MJ, Fox M, Griffo G, Hamon-Benais C, Povey S, Danpure CJ. Characterization and chromosomal mapping of a genomic clone encoding human alanine:glyoxylate aminotransferase. Genomics 10: 34-42 (1991).
Purdue PE, Takada Y, Danpure CJ. Identification of mutations associated with peroxisome-to-mitochondrion mistargeting of alanine/glyoxylate aminotransferase in primary hyperoxaluria type 1. J. Cell Biol. 111: 2341-2351 (1990).
Raghavendra AS, Reumann S, Heldt HW. Participation of mitochondrial metabolism in photorespiration. Reconstituted system of peroxisomes and mitochondria from spinach leaves. Plant Physiol. 116: 1333-1337 (1998).
Ramos A, Raven N, Sharp RJ, Bartolucci S, Rossi M, Cannio R, Lebbink J, Van Der Oost J, De Vos WM, Santos H. Stabilization of enzymes against thermal stress and freeze-drying by mannosylglycerate. Appl. Environ. Microbiol. 63: 4020-4025 (1997).
Ranaldi F, Vanni P, Giachetti E. Multisite inhibition of Pinus pinea isocitrate lyase by phosphate. Plant Physiol. 124: 1131-1138 (2000).
Rapoport TA, Heinrich R, Rapoport SM. The regulatory principles of glycolysis in erythrocytes in vivo and in vitro. A minimal comprehensive model describing steady states, quasi-steady states and time-dependent processes. Biochem. J. 154: 449-469 (1976).
Rathnam CK, Chollet R. Photosynthetic carbon metabolism in Panicum milioides, a C3-C4 intermediate species: evidence for a limited C4 dicarboxylic acid pathway of photosynthesis. Biochim. Biophys. Acta 548: 500-519 (1979).
Raynaud S, Perrin R, Cocaign-Bousquet M, Loubiere P. Metabolic and transcriptomic adaptation of Lactococcus lactis subsp. lactis Biovar diacetylactis in response to autoacidification and temperature downshift in skim milk. Appl. Environ. Microbiol. 71: 8016-8023 (2005).
Rendina AR, Hermes JD, Cleland WW. A novel method for determining rate constants for dehydration of aldehyde hydrates. Biochemistry 23: 5148-5156 (1984).
Reumann S, Weber AP. Plant peroxisomes respire in the light: some gaps of the photorespiratory C2 cycle have become filled - others remain. Biochim. Biophys. Acta 1763: 1496-1510 (2006).
Rhodes D, Gage DA, Cooper A, Hanson AD. S-Methylmethionine conversion to dimethylsulfoniopropionate: evidence for an unusual transamination reaction. Plant Physiol. 115: 1541-1548 (1997).
Ricoult C, Echeverria LO, Cliquet JB, Limami AM. Characterization of alanine aminotransferase (AlaAT) multigene family and hypoxic response in young seedlings of the model legume Medicago truncatula. J. Exp. Bot. 57: 3079-3089 (2006).
Rius SP, Casati P, Iglesias AA, Gomez-Casati DF. Characterization of Arabidopsis thaliana lines deficient in GAPC-1, a cytosolic NAD-dependent glyceraldehyde 3-phosphate dehydrogenase. Plant Physiol. 148: 1655-1667 (2008).
Roberts K, Granum E, Leegood RC, Raven JA. C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiol. 145: 230-235 (2007).
Rovers W, Giersch C. Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. Biosystems 35: 63-73 (1995).
Rumsby G, Cregeen DP. Identification and expression of a cDNA for human hydroxypyruvate/glyoxylate reductase. Biochim. Biophys. Acta 1446: 383-388 (1999).
Rylott EL, Gilday AD, Graham IA. The gluconeogenic enzyme phosphoenolpyruvate carboxykinase in Arabidopsis is essential for seedling establishment. Plant Physiol. 131: 1834-1842 (2003).
Salido EC, Li XM, Lu Y, Wang X, Santana A, Roy-Chowdhury N, Torres A, Shapiro LJ, Roy-Chowdhury J. Alanine-glyoxylate aminotransferase-deficient mice, a model for primary hyperoxaluria that responds to adenoviral gene transfer. Proc. Natl. Acad. Sci. U.S.A. 103: 18249-18254 (2006).
Salusjarvi L, Kankainen M, Soliymani R, Pitkanen JP, Penttila M, Ruohonen L. Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae. Microb. Cell Fact. 7: 18 (2008).
Sanchez AM, Bennett GN, San KY. Batch culture characterization and metabolic flux analysis of succinate-producing Escherichia coli strains. Metab. Eng. 8: 209-226 (2006).
Sanchez AM, Bennett GN, San KY. Novel pathway engineering design of the anaerobic central metabolic pathway in Escherichia coli to increase succinate yield and productivity. Metab. Eng. 7: 229-239 (2005).
Santana A, Salido E, Torres A, Shapiro LJ. Primary hyperoxaluria type 1 in the Canary Islands: a conformational disease due to I244T mutation in the P11L-containing alanine:glyoxylate aminotransferase. Proc. Natl. Acad. Sci. U.S.A. 100: 7277-7282 (2003).
Savvi S, Warner DF, Kana BD, McKinney JD, Mizrahi V, Dawes SS. Functional characterization of a vitamin B12-dependent methylmalonyl pathway in Mycobacterium tuberculosis: implications for propionate metabolism during growth on fatty acids. J. Bacteriol. 190: 3886-3895 (2008).
Scheibe R, Wedel N, Vetter S, Emmerlich V, Sauermann SM. Co-existence of two regulatory NADP-glyceraldehyde 3-P dehydrogenase complexes in higher plant chloroplasts. Eur. J. Biochem. 269: 5617-5624 (2002).
Schilling CH, Schuster S, Palsson BO, Heinrich R. Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic Era. Biotechnol. Prog. 15: 296-303 (1999).
Schnarrenberger C, Martin W. Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer. Eur. J. Biochem. 269: 868-883 (2002).
Schneider S, Mohamed ME, Fuchs G. Anaerobic metabolism of L-phenylalanine via benzoyl-CoA in the denitrifying bacterium Thauera aromatica. Arch. Microbiol. 168: 310-320 (1997).
Schrader MC, Eskey CJ, Simplaceanu V, Ho C. A carbon-13 nuclear magnetic resonance investigation of the metabolic fluxes associated with glucose metabolism in human erythrocytes. Biochim. Biophys. Acta 1182: 162-178 (1993).
Schrader SM, Wise RR, Wacholtz WF, Ort DR, Sharkey TD. Thylakoid membrane responses to moderately high leaf temperature in Pima cotton. Plant Cell Environ. 27: 725-735 (2004).
Schuller DJ, Fetter CH, Banaszak LJ, Grant GA. Enhanced expression of the Escherichia coli serA gene in a plasmid vector. Purification, crystallization, and preliminary X-ray data of D-3 phosphoglycerate dehydrogenase. J. Biol. Chem. 264: 2645-2648 (1989).
Schuller DJ, Grant GA, Banaszak LJ. The allosteric ligand site in the Vmax-type cooperative enzyme phosphoglycerate dehydrogenase. Nat. Struct. Biol. 2: 69-76 (1995).
Schumann U, Prestele J, O'Geen H, Brueggeman R, Wanner G, Gietl C. Requirement of the C3HC4 zinc RING finger of the Arabidopsis PEX10 for photorespiration and leaf peroxisome contact with chloroplasts. Proc. Natl. Acad. Sci. U.S.A. 104: 1069-1074 (2007).
Schuster S, Dandekar T, Fell DA. Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol. 17: 53-60 (1999).
Scott P, Lange AJ, Kruger NJ. Photosynthetic carbon metabolism in leaves of transgenic tobacco (Nicotiana tabacum L.) containing decreased amounts of fructose 2,6-bisphosphate. Planta 211: 864-873 (2000).
Shastri AA, Morgan JA. Flux balance analysis of photoautotrophic metabolism. Biotechnol. Prog. 21: 1617-1626 (2005).
Shioi Y, Nagamine M, Sasa T. Purification and properties of L-alanine:4,5-dioxovalerate aminotransferase from Chlorella regularis. Arch. Biochem. Biophys. 234: 117-124 (1984).
Silva Z, Alarico S, Nobre A, Horlacher R, Marugg J, Boos W, Mingote AI, da Costa MS. Osmotic adaptation of Thermus thermophilus RQ-1: lesson from a mutant deficient in synthesis of trehalose. J. Bacteriol. 185: 5943-5952 (2003).
Simpson JP, Di Leo R, Dhanoa PK, Allan WL, Makhmoudova A, Clark SM, Hoover GJ, Mullen RT, Shelp BJ. Identification and characterization of a plastid-localized Arabidopsis glyoxylate reductase isoform: comparison with a cytosolic isoform and implications for cellular redox homeostasis and aldehyde detoxification. J. Exp. Bot. 59: 2545-2554 (2008).
Simpson RJ, Davidson BE. Studies on 3-deoxy-D-arabinoheptulosonate-7-phosphate synthetase(phe) from Escherichia coli K12. 2. Kinetic properties. Eur. J. Biochem. 70: 501-507 (1976).
Sinclair DA, Dawes IW. Genetics of the synthesis of serine from glycine and the utilization of glycine as sole nitrogen source by Saccharomyces cerevisiae. Genetics 140: 1213-1222 (1995).
Singh VK, Ghosh I. Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets. Theor. Biol. Med. Model. 3: 27 (2006).
Smith IK. Purification and characterization of serine:glyoxylate aminotransferase from kidney bean (Phaseolus vulgaris). Biochim. Biophys. Acta 321: 156-164 (1973).
Smith SM. Does the glyoxylate cycle have an anaplerotic function in plants? Trends Plant Sci. 7: 12-13 (2002).
Snell K, Fell DA. Metabolic control analysis of mammalian serine metabolism. Adv. Enzyme Reg. 30: 13-32 (1990).
Somerville CR. An early Arabidopsis demonstration. Resolving a few issues concerning photorespiration. Plant Physiol. 125: 20-24 (2001).
Somerville CR, Ogren WL. Mutants of the cruciferous plant Arabidopsis thaliana lacking glycine decarboxylase activity. Biochem. J. 202: 373-380 (1982).
Sonntag K, Schwinde J, de Graaf AA, Marx A, Eikmanns BJ, Wiechert W, Sahm H. 13C NMR studies of the fluxes in the central metabolism of Corynebacterium glutamicum during growth and overproduction of amino acids in batch cultures. Appl. Microbiol. Biotechnol. 44: 489-495 (1995).
Sparla F, Zaffagnini M, Wedel N, Scheibe R, Pupillo P, Trost P. Regulation of photosynthetic GAPDH dissected by mutants. Plant Physiol. 138: 2210-2219 (2005).
Sriram G, Fulton DB, Iyer VV, Peterson JM, Zhou R, Westgate ME, Spalding MH, Shanks JV. Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthetically directed fractional 13C labeling, two-dimensional [13C, 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiol. 136: 3043-3057 (2004).
Stenberg K, Lindqvist Y. Three-dimensional structures of glycolate oxidase with bound active-site inhibitors. Protein Sci. 6: 1009-1015 (1997).
Stitt M, Krapp A. The interaction between elevated carbon dioxide and nitrogen nutrition: the physiological and molecular background. Plant Cell Environ. 22: 583-621 (1999).
Stuckrath I, Lange HC, Kotter P, van Gulik WM, Entian KD, Heijnen JJ. Characterization of null mutants of the glyoxylate cycle and gluconeogenic enzymes in S. cerevisiae through metabolic network modeling verified by chemostat cultivation. Biotechnol. Bioeng. 77: 61-72 (2002).
Sudo E, Makino A, Mae T. Differences between rice and wheat in ribulose-1,5-bisphosphate regeneration capacity per unit of leaf-N content. Plant Cell Environ. 26: 255-263 (2003).
Sulpice R, Tschoep H, Von Korff M, Bussis D, Usadel B, Hohne M, Witucka-Wall H, Altmann T, Stitt M, Gibon Y. Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell Environ. 30: 1163-1175 (2007).
Tabatabaie L, de Koning TJ, Geboers AJ, van den Berg IE, Berger R, Klomp LW. Novel mutations in 3-phosphoglycerate dehydrogenase (PHGDH) are distributed throughout the protein and result in altered enzyme kinetics. Hum. Mutat. 30: 749-756 (2009).
Takada Y, Kaneko N, Esumi H, Purdue PE, Danpure CJ. Human peroxisomal L-alanine: glyoxylate aminotransferase. Evolutionary loss of a mitochondrial targeting signal by point mutation of the initiation codon. Biochem. J. 268: 517-520 (1990).
Takada Y, Noguchi T. Characteristics of alanine: glyoxylate aminotransferase from Saccharomyces cerevisiae, a regulatory enzyme in the glyoxylate pathway of glycine and serine biosynthesis from tricarboxylic acid-cycle intermediates. Biochem. J. 231: 157-163 (1985).
Takahashi S, Bauwe H, Badger M. Impairment of the photorespiratory pathway accelerates photoinhibition of photosystem II by suppression of repair but not acceleration of damage processes in Arabidopsis. Plant Physiol. 144: 487-494 (2007).
Taler D, Galperin M, Benjamin I, Cohen Y, Kenigsbuch D. Plant eR genes that encode photorespiratory enzymes confer resistance against disease. Plant Cell 16: 172-184 (2004).
Tang YJ, Hwang JS, Wemmer DE, Keasling JD. The Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Appl. Environ. Microbiol. 73: 718-729 (2007).
Tang YJ, Sapra R, Joyner D, Hazen TC, Myers S, Reichmuth D, Blanch H, Keasling JD. Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strain. Biotechnol. Bioeng. 102: 1377-1386 (2009).
Tauler A, el-Maghrabi MR, Pilkis SJ. Functional homology of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphoglycerate mutase, and 2,3-bisphosphoglycerate mutase. J. Biol. Chem. 262: 16808-16815 (1987).
Tecsi LI, Maule AJ, Smith AM, Leegood RC. Metabolic alterations in cotyledons of Cucurbita pepo infected by cucumber mosaic virus. J. Exp. Bot. 45: 1541-1551 (1994).
Tetlow IJ, Davies EJ, Vardy KA, Bowsher CG, Burrell MM, Emes MJ. Subcellular localization of ADPglucose pyrophosphorylase in developing wheat endosperm and analysis of the properties of a plastidial isoform. J. Exp. Bot. 54: 715-725 (2003).
Textor S, Wendisch VF, de Graaf AA, Muller U, Linder MI, Linder D, Buckel W. Propionate oxidation in Escherichia coli: evidence for operation of a methylcitrate cycle in bacteria. Arch. Microbiol. 168: 428-436 (1997).
Theodorou ME, Kruger NJ. Physiological relevance of fructose 2,6-bisphosphate in the regulation of spinach leaf pyrophosphate:fructose 6-phosphate 1-phosphotransferase. Planta 213: 147-157 (2001).
Thiel J, Muller M, Weschke W, Weber H. Amino acid metabolism at the maternal-filial boundary of young barley seeds: a microdissection-based study. Planta 230: 205-213 (2009).
Thykaer J, Christensen B, Nielsen J. Metabolic network analysis of an adipoyl-7-ADCA-producing strain of Penicillium chrysogenum: elucidation of adipate degradation. Metab. Eng. 4: 151-158 (2002).
Tiessen A, Hendriks JH, Stitt M, Branscheid A, Gibon Y, Farre EM, Geigenberger P. Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: a novel regulatory mechanism linking starch synthesis to the sucrose supply. Plant Cell 14: 2191-2213 (2002).
Timm S, Nunes-Nesi A, Parnik T, Morgenthal K, Wienkoop S, Keerberg O, Weckwerth W, Kleczkowski LA, Fernie AR, Bauwe H. A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis. Plant Cell 20: 2848-2859 (2008).
Titus DE, Becker WM. Investigation of the glyoxysome-peroxisome transition in germinating cucumber cotyledons using double-label immunoelectron microscopy. J. Cell Biol. 101: 1288-1299 (1985).
Tobey KL, Grant GA. The nucleotide sequence of the serA gene of Escherichia coli and the amino acid sequence of the encoded protein, D-3-phosphoglycerate dehydrogenase. J. Biol. Chem. 261: 12179-12183 (1986).
Trevanion SJ. Regulation of sucrose and starch synthesis in wheat (Triticum aestivum L.) leaves: role of fructose 2,6-bisphosphate. Planta 215: 653-665 (2002).
Tripp HJ, Schwalbach MS, Meyer MM, Kitner JB, Breaker RR, Giovannoni SJ. Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11. Environ. Microbiol. 11: 230-238 (2009).
Tuli R, Thomas J. Regulation of glutamine synthetase in the blue-green alga Anabaena L-31. Biochim. Biophys. Acta 613: 526-533 (1980).
Vallino JJ, Stephanopoulos G. Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction. Biotechnol. Bioeng. 67: 872-885 (2000).
Valverde F, Losada M, Serrano A. Engineering a central metabolic pathway: glycolysis with no net phosphorylation in an Escherichia coli gap mutant complemented with a plant GapN gene. FEBS Lett. 449: 153-158 (1999).
van de Walle M, Shiloach J. Proposed mechanism of acetate accumulation in two recombinant Escherichia coli strains during high density fermentation. Biotechnol. Bioeng. 57: 71-78 (1998).
Van Dien SJ, Iwatani S, Usuda Y, Matsui K. Theoretical analysis of amino acid-producing Escherichia coli using a stoichiometric model and multivariate linear regression. J. Biosci. Bioeng. 102: 34-40 (2006).
van Gulik WM, de Laat WT, Vinke JL, Heijnen JJ. Application of metabolic flux analysis for the identification of metabolic bottlenecks in the biosynthesis of penicillin-G. Biotechnol. Bioeng. 68: 602-618 (2000).
Vereecke D, Cornelis K, Temmerman W, Holsters M, Goethals K. Versatile persistence pathways for pathogens of animals and plants. Trends Microbiol. 10: 485-488 (2002).
Verslues PE, Kim YS, Zhu JK. Altered ABA, proline and hydrogen peroxide in an Arabidopsis glutamate:glyoxylate aminotransferase mutant. Plant Mol. Biol. 64: 205-217 (2007).
Vojinovic V, von Stockar U. Influence of uncertainties in pH, pMg, activity coefficients, metabolite concentrations, and other factors on the analysis of the thermodynamic feasibility of metabolic pathways. Biotechnol. Bioeng. 103: 780-795 (2009).
Waditee R, Bhuiyan MN, Hirata E, Hibino T, Tanaka Y, Shikata M, Takabe T. Metabolic engineering for betaine accumulation in microbes and plants. J. Biol. Chem. 282: 34185-34193 (2007).
Wang JL, Walling LL, Jauh GY, Gu YQ, Lord EM. Lily cofactor-independent phosphoglycerate mutase: purification, partial sequencing, and immunolocalization. Planta 200: 343-352 (1996).
Wang Q, Chen X, Yang Y, Zhao X. Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production. Appl. Microbiol. Biotechnol. 73: 887-894 (2006).
Wang R, Okamoto M, Xing X, Crawford NM. Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol. 132: 556-567 (2003).
Watts RW. Alanine glyoxylate aminotransferase deficiency: biochemical and molecular genetic lessons from the study of a human disease. Adv. Enzyme Reg. 32: 309-327 (1992).
Weber H, Heim U, Borisjuk L, Wobus U. Cell-type specific, coordinate expression of two ADP-glucose pyrophosphorylase genes in relation to starch biosynthesis during seed development of Vicia faba L. Planta 195: 352-361 (1995).
Wei H, Dhanaraj AL, Rowland LJ, Fu Y, Krebs SL, Arora R. Comparative analysis of expressed sequence tags from cold-acclimated and non-acclimated leaves of Rhododendron catawbiense Michx. Planta 221: 406-416 (2005).
Wendisch VF, de Graaf AA, Sahm H, Eikmanns BJ. Quantitative determination of metabolic fluxes during coutilization of two carbon sources: comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose. J. Bacteriol. 182: 3088-3096 (2000).
Westram A, Lloyd JR, Roessner U, Riesmeier JW, Kossmann J. Increases of 3-phosphoglyceric acid in potato plants through antisense reduction of cytoplasmic phosphoglycerate mutase impairs photosynthesis and growth, but does not increase starch contents. Plant Cell Environ. 25: 1133-1143 (2002).
Wiback SJ, Palsson BO. Extreme pathway analysis of human red blood cell metabolism. Biophys. J. 83: 808-818 (2002).
Wingler A, Ann VJ, Lea PJ, Leegood RC. Serine:glyoxylate aminotransferase exerts no control on photosynthesis. J. Exp. Bot. 50: 719-722 (1999).
Wingler A, Lea PJ, Leegood RC. Control of photosynthesis in barley plants with reduced activities of glycine decarboxylase. Planta 202: 171-178 (1997).
Wingler A, Lea PJ, Leegood RC. Photorespiratory metabolism of glyoxylate and formate in glycine-accumulating mutants of barley and Amaranthus edulis. Planta 207: 518-526 (1999).
Wingler A, Lea PJ, Quick WP, Leegood RC. Photorespiration: metabolic pathways and their role in stress protection. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 355: 1517-1529 (2000).
Wingler A, Quick WP, Bungard RA, Bailey KJ, Lea PJ, Leegood RC. The role of photorespiration during drought stress: an analysis utilizing barley mutants with reduced activities of photorespiratory enzymes. Plant Cell Environ. 22: 361-373 (1999).
Wingler A, von Schaewen A, Leegood RC, Lea PJ, Quick WP. Regulation of leaf senescence by cytokinin, sugars, and light. Effects on NADH-dependent hydroxypyruvate reductase. Plant Physiol. 116: 329-335 (1998).
Wingler A, Walker RP, Chen ZH, Leegood RC. Phosphoenolpyruvate carboxykinase is involved in the decarboxylation of aspartate in the bundle sheath of maize. Plant Physiol. 120: 539-546 (1999).
Xu H, Zhang J, Zeng J, Jiang L, Liu E, Peng C, He Z, Peng X. Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice. J. Exp. Bot. 60: 1799-1809 (2009).
Xu HW, Ji XM, He ZH, Shi WP, Zhu GH, Niu JK, Li BS, Peng XX. Oxalate accumulation and regulation is independent of glycolate oxidase in rice leaves. J. Exp. Bot. 57: 1899-1908 (2006).
Xue HH, Fujie M, Sakaguchi T, Oda T, Ogawa H, Kneer NM, Lardy HA, Ichiyama A. Flux of the L-serine metabolism in rat liver. The predominant contribution of serine dehydratase. J. Biol. Chem. 274: 16020-16027 (1999).
Xue HH, Sakaguchi T, Fujie M, Ogawa H, Ichiyama A. Flux of the L-serine metabolism in rabbit, human, and dog livers. Substantial contributions of both mitochondrial and peroxisomal serine:pyruvate/alanine:glyoxylate aminotransferase. J. Biol. Chem. 274: 16028-16033 (1999).
Xue X, Gauthier DA, Turpin DH, Weger HG. Interactions between photosynthesis and respiration in the green alga Chlamydomonas reinhardtii. Characterization of light-enhanced dark respiration. Plant Physiol. 112: 1005-1014 (1996).
Yamaguchi K, Nishimura M. Reduction to below threshold levels of glycolate oxidase activities in transgenic tobacco enhances photoinhibition during irradiation. Plant Cell Physiol. 41: 1397-1406 (2000).
Yang TH, Heinzle E, Wittmann C. Theoretical aspects of 13C metabolic flux analysis with sole quantification of carbon dioxide labeling. Comput. Biol. Chem. 29: 121-133 (2005).
Yang X, Liang Z, Wen X, Lu C. Genetic engineering of the biosynthesis of glycinebetaine leads to increased tolerance of photosynthesis to salt stress in transgenic tobacco plants. Plant Mol. Biol. 66: 73-86 (2008).
Yokota A, Suehiro S, Kitaoka S. Purification and some properties of mitochondrial glutamate:glyoxylate aminotransferase and mechanism of its involvement in glycolate pathway in Euglena gracilis z. Arch. Biochem. Biophys. 242: 507-514 (1985).
Yoshida T, Yamaguchi K, Hagishita T, Mitsunaga T, Miyata A, Tanabe T, Toh H, Ohshiro T, Shimao M, Izumi Y. Cloning and expression of the gene for hydroxypyruvate reductase (D-glycerate dehydrogenase from an obligate methylotroph Hyphomicrobium methylovorum GM2. Eur. J. Biochem. 223: 727-732 (1994).
Young XK, McCarty RE. Assay of proton-coupled glycolate and D-glycerate transport into chloroplast inner envelope membrane vesicles by stopped-flow fluorescence. Plant Physiol. 101: 793-799 (1993).
Yu C, Huang AH. Conversion of serine to glycerate in intact spinach leaf peroxisomes: role of malate dehydrogenase. Arch. Biochem. Biophys. 245: 125-133 (1986).
Zaffagnini M, Michelet L, Marchand C, Sparla F, Decottignies P, Le Marechal P, Miginiac-Maslow M, Noctor G, Trost P, Lemaire SD. The thioredoxin-independent isoform of chloroplastic glyceraldehyde-3-phosphate dehydrogenase is selectively regulated by glutathionylation. FEBS J. 274: 212-226 (2007).
Zhao J, Baba T, Mori H, Shimizu K. Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate. Metab. Eng. 6: 164-174 (2004).
Zheng BS, Ronnberg E, Viitanen L, Salminen TA, Lundgren K, Moritz T, Edqvist J. Arabidopsis sterol carrier protein-2 is required for normal development of seeds and seedlings. J. Exp. Bot. 59: 3485-3499 (2008).
Number of references = 414
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