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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, glycerate dehydrogenase

Anderson LE, Carol AA. Enzyme co-localization in the pea leaf cytosol: 3-P-glycerate kinase, glyceraldehyde-3-P dehydrogenase, triose-P isomerase and aldolase. Plant Sci. 169: 620-628 (2005).

Anderson LE, Wang X, Gibbons JT. Three enzymes of carbon metabolism or their antigenic analogs in pea leaf nuclei. Plant Physiol. 108: 659-667 (1995).

Andrews TJ, Kane HJ. Pyruvate is a by-product of catalysis by ribulosebisphosphate carboxylase/oxygenase. J. Biol. Chem. 266: 9447-9452 (1991).

Bakker BM, Westerhoff HV, Opperdoes FR, Michels PA. Metabolic control analysis of glycolysis in trypanosomes as an approach to improve selectivity and effectiveness of drugs. Mol. Biochem. Parasitol. 106: 1-10 (2000).

Bardey V, Vallet C, Robas N, Charpentier B, Thouvenot B, Mougin A, Hajnsdorf E, Regnier P, Springer M, Branlant C. Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli. Mol. Microbiol. 57: 1265-1287 (2005).

Bell JK, Pease PJ, Bell JE, Grant GA, Banaszak LJ. De-regulation of D-3-phosphoglycerate dehydrogenase by domain removal. Eur. J. Biochem. 269: 4176-4184 (2002).

Beudeker RF, Tabita FR. Control of photorespiratory glycolate metabolism in an oxygen-resistant mutant of Chlorella sorokiniana. J. Bacteriol. 155: 650-656 (1983).

Biemelt S, Hajirezaei MR, Melzer M, Albrecht G, Sonnewald U. Sucrose synthase activity does not restrict glycolysis in roots of transgenic potato plants under hypoxic conditions. Planta 210: 41-49 (1999).

Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR. Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release. Plant Physiol. 148: 786-795 (2008).

de Graaf AA, Striegel K, Wittig RM, Laufer B, Schmitz G, Wiechert W, Sprenger GA, Sahm H. Metabolic state of Zymomonas mobilis in glucose-, fructose-, and xylose-fed continuous cultures as analysed by 13C- and 31P-NMR spectroscopy. Arch. Microbiol. 171: 371-385 (1999).

de Koning TJ, Klomp LWJ. Serine-deficiency syndromes. Curr. Opin. Neurol. 17: 197-204 (2004).

Eisenhut M, Kahlon S, Hasse D, Ewald R, Lieman-Hurwitz J, Ogawa T, Ruth W, Bauwe H, Kaplan A, Hagemann M. The plant-like C2 glycolate pathway and the bacterial-like glycerate cycle cooperate in phosphoglycolate metabolism in cyanobacteria. Plant Physiol. 142: 333-342 (2006).

Eisenhut M, Ruth W, Haimovich M, Bauwe H, Kaplan A, Hagemann M. The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc. Natl. Acad. Sci. U.S.A. 105: 17199-17204 (2008).

Fridlyand LE, Backhausen JE, Holtgrefe S, Kitzmann C, Scheibe R. Quantitative evaluation of the rate of 3-phosphoglycerate reduction in chloroplasts. Plant Cell Physiol. 38: 1177-1186 (1997).

Fridlyand LE, Scheibe R. Controlled distribution of electrons between acceptors in chloroplasts: a theoretical consideration Biochim. Biophys. Acta 1413: 31-42 (1999).

Fridlyand LE, Scheibe R. Regulation of the Calvin cycle for CO2 fixation as an example for general control mechanisms in metabolic cycles. Biosystems 51: 79-93 (1999).

Geiger M, Haake V, Ludewig F, Sonnewald U, Stitt M. The nitrate and ammonium nitrate supply have a major influence on the response of photosynthesis, carbon metabolism, nitrogen metabolism and growth to elevated carbon dioxide in tobacco. Plant Cell Environ. 22: 1177-1199 (1999).

Goldberg JD, Yoshida T, Brick P. Crystal structure of a NAD-dependent D-glycerate dehydrogenase at 2.4 A resolution. J. Mol. Biol. 236: 1123-1140 (1994).

Greenler JM, Sloan JS, Schwartz BW, Becker WM. Isolation, characterization and sequence analysis of a full-length cDNA clone encoding NADH-dependent hydroxypyruvate reductase from cucumber. Plant Mol. Biol. 13: 139-150 (1989).

Hausler RE, Rademacher T, Li J, Lipka V, Fischer KL, Schubert S, Kreuzaler F, Hirsch HJ. Single and double overexpression of C4-cycle genes had differential effects on the pattern of endogenous enzymes, attenuation of photorespiration and on contents of UV protectants in transgenic potato and tobacco plants. J. Exp. Bot. 52: 1785-1803 (2001).

Ho CL, Noji M, Saito M, Saito K. Regulation of serine biosynthesis in Arabidopsis. Crucial role of plastidic 3-phosphoglycerate dehydrogenase in non-photosynthetic tissues. J. Biol. Chem. 274: 397-402 (1999).

Ho CL, Saito K. Molecular biology of the plastidic phosphorylated serine biosynthetic pathway in Arabidopsis thaliana. Amino Acids 20: 243-259 (2001).

Holaday AS, Martindale W, Alred R, Brooks AL, Leegood RC. Changes in activities of enzymes of carbon metabolism in leaves during exposure of plants to low temperature. Plant Physiol. 98: 1105-1114 (1992).

Kebeish R, Niessen M, Thiruveedhi K, Bari R, Hirsch HJ, Rosenkranz R, Stabler N, Schonfeld B, Kreuzaler F, Peterhansel C. Chloroplastic photorespiratory bypass increases photosynthesis and biomass production in Arabidopsis thaliana. Nat. Biotechnol. 25: 593-599 (2007).

Kukreja N, Singh BP, Arora N, Gaur SN, Sridhara S. Identification of Epicoccum purpurascens allergens by two-dimensional immunoblotting and mass spectrometry. Immunobiology 213: 65-73 (2008).

Liang Z, Yu C, Huang AH. Conversion of glycerate to serine in intact spinach leaf peroxisomes. Arch. Biochem. Biophys. 233: 393-401 (1984).

Martinez I, Zhu J, Lin H, Bennett GN, San KY. Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways. Metab. Eng. 10: 352-359 (2008).

Meister M, Agostino A, Hatch MD. The roles of malate and aspartate in C4 photosynthetic metabolism of Flaveria bidentis (L). Planta 199: 262-269 (1996).

Mulquiney PJ, Kuchel PW. Model of 2,3-bisphosphoglycerate metabolism in the human erythrocyte based on detailed enzyme kinetic equations: equations and parameter refinement. Biochem. J. 342: 581-596 (1999).

Price GD, Evans JR, von Caemmerer S, Yu JW, Badger MR. Specific reduction of chloroplast glyceraldehyde-3-phosphate dehydrogenase activity by antisense RNA reduces CO2 assimilation via a reduction in ribulose bisphosphate regeneration in transgenic tobacco plants. Planta 195: 369-378 (1995).

Ramos A, Raven N, Sharp RJ, Bartolucci S, Rossi M, Cannio R, Lebbink J, Van Der Oost J, De Vos WM, Santos H. Stabilization of enzymes against thermal stress and freeze-drying by mannosylglycerate. Appl. Environ. Microbiol. 63: 4020-4025 (1997).

Rius SP, Casati P, Iglesias AA, Gomez-Casati DF. Characterization of Arabidopsis thaliana lines deficient in GAPC-1, a cytosolic NAD-dependent glyceraldehyde 3-phosphate dehydrogenase. Plant Physiol. 148: 1655-1667 (2008).

Schuller DJ, Fetter CH, Banaszak LJ, Grant GA. Enhanced expression of the Escherichia coli serA gene in a plasmid vector. Purification, crystallization, and preliminary X-ray data of D-3 phosphoglycerate dehydrogenase. J. Biol. Chem. 264: 2645-2648 (1989).

Schuller DJ, Grant GA, Banaszak LJ. The allosteric ligand site in the Vmax-type cooperative enzyme phosphoglycerate dehydrogenase. Nat. Struct. Biol. 2: 69-76 (1995).

Sulpice R, Tschoep H, Von Korff M, Bussis D, Usadel B, Hohne M, Witucka-Wall H, Altmann T, Stitt M, Gibon Y. Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell Environ. 30: 1163-1175 (2007).

Tabatabaie L, de Koning TJ, Geboers AJ, van den Berg IE, Berger R, Klomp LW. Novel mutations in 3-phosphoglycerate dehydrogenase (PHGDH) are distributed throughout the protein and result in altered enzyme kinetics. Hum. Mutat. 30: 749-756 (2009).

Tobey KL, Grant GA. The nucleotide sequence of the serA gene of Escherichia coli and the amino acid sequence of the encoded protein, D-3-phosphoglycerate dehydrogenase. J. Biol. Chem. 261: 12179-12183 (1986).

Valverde F, Losada M, Serrano A. Engineering a central metabolic pathway: glycolysis with no net phosphorylation in an Escherichia coli gap mutant complemented with a plant GapN gene. FEBS Lett. 449: 153-158 (1999).

Waditee R, Bhuiyan MN, Hirata E, Hibino T, Tanaka Y, Shikata M, Takabe T. Metabolic engineering for betaine accumulation in microbes and plants. J. Biol. Chem. 282: 34185-34193 (2007).

Yoshida T, Yamaguchi K, Hagishita T, Mitsunaga T, Miyata A, Tanabe T, Toh H, Ohshiro T, Shimao M, Izumi Y. Cloning and expression of the gene for hydroxypyruvate reductase (D-glycerate dehydrogenase from an obligate methylotroph Hyphomicrobium methylovorum GM2. Eur. J. Biochem. 223: 727-732 (1994).

Yu C, Huang AH. Conversion of serine to glycerate in intact spinach leaf peroxisomes: role of malate dehydrogenase. Arch. Biochem. Biophys. 245: 125-133 (1986).

Number of references = 41

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