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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
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References
HORT640 - Metabolic Plant Physiology

References, circadian rhythm

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Chen HM, Chien CY, Huang TC 1996 Regulation and molecular structure of a circadian oscillating protein located in the cell membrane of the prokaryote Synechococcus RF-1. Planta 199: 520-527.

Chen M, Ni M 2006 RFI2, a RING-domain zinc finger protein, negatively regulates CONSTANS expression and photoperiodic flowering. Plant J. 46: 823-833.

Chen M, Ni M 2006 RED AND FAR-RED INSENSITIVE 2, a RING-domain zinc finger protein, mediates phytochrome-controlled seedling de-etiolation responses. Plant Physiol. 140: 457-465.

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Chow F, de Oliveira MC, Pedersen M 2004 In vitro assay and light regulation of nitrate reductase in red alga Gracilaria chilensis. J. Plant Physiol. 161: 769-776.

Christensen MK, Falkeid G, Loros JJ, Dunlap JC, Lillo C, Ruoff P 2004 A nitrate-induced frq-less oscillator in Neurospora crassa. J. Biol. Rhythms 19: 280-286.

Claudel T, Cretenet G, Saumet A, Gachon F 2007 Crosstalk between xenobiotics metabolism and circadian clock. FEBS Lett. 581: 3626-3633.

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Crosthwaite SK 2004 Circadian clocks and natural antisense RNA. FEBS Lett. 567: 49-54.

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Dian W, Jiang H, Chen Q, Liu F, Wu P 2003 Cloning and characterization of the granule-bound starch synthase II gene in rice: gene expression is regulated by the nitrogen level, sugar and circadian rhythm. Planta 218: 261-268.

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Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S 2004 Constructing biological pathway models with hybrid functional Petri nets. In Silico Biol. 4: 0023.

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Dresselhaus T, Barcelo P, Hagel C, Lorz H, Humbeck K 1996 Isolation and characterization of a Tritordeum cDNA encoding S-adenosylmethionine decarboxylase that is circadian-clock-regulated. Plant Mol. Biol. 30: 1021-1033.

Dudareva N, Andersson S, Orlova I, Gatto N, Reichelt M, Rhodes D, Boland W, Gershenzon J 2005 The nonmevalonate pathway supports both monoterpene and sesquiterpene formation in snapdragon flowers. Proc. Natl. Acad. Sci. U.S.A. 102: 933-938.

Dudareva N, Martin D, Kish CM, Kolosova N, Gorenstein N, Faldt J, Miller B, Bohlmann J 2003 (E)-beta-ocimene and myrcene synthase genes of floral scent biosynthesis in snapdragon: function and expression of three terpene synthase genes of a new terpene synthase subfamily. Plant Cell 15: 1227-1241.

Eckardt NA 2005 Temperature entrainment of the Arabidopsis circadian clock. Plant Cell 17: 645-647.

Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, Straume M, Smith JQ, Millar AJ 2006 FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell 18: 639-650.

Eriksson ME, Hanano S, Southern MM, Hall A, Millar AJ 2003 Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock. Planta 218: 159-162.

Estelle M 2001 Proteases and cellular regulation in plants. Curr. Opin. Plant Biol. 4: 254-260.

Finlayson SA, Lee IJ, Mullet JE, Morgan PW 1999 The mechanism of rhythmic ethylene production in sorghum. The role of phytochrome B and simulated shading. Plant Physiol. 119: 1083-1089.

Fritz L, Stringher CG, Colepicolo P 1996 Imaging oscillations in Gonyaulax: a chloroplast rhythm of nitrate reductase visualized by immunocytochemistry. Braz. J. Med. Biol. Res. 29: 111-117.

Fujita K, Okada M, Lei K, Ito J, Ohkura K, Adu-Gyamfi JJ, Mohapatra PK 2003 Effect of P-deficiency on photoassimilate partitioning and rhythmic changes in fruit and stem diameter of tomato (Lycopersicon esculentum) during fruit growth. J. Exp. Bot. 54: 2519-2528.

Garcia-Ojalvo J, Elowitz MB, Strogatz SH 2004 Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing. Proc. Natl. Acad. Sci. U.S.A. 101: 10955-10960.

Gong Z, Koiwa H, Cushman MA, Ray A, Bufford D, Kore-eda S, Matsumoto TK, Zhu J, Cushman JC, Bressan RA, Hasegawa PM 2001 Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants. Plant Physiol. 126: 363-375.

Gonze D, Leloup JC, Goldbeter A 2000 Theoretical models for circadian rhythms in Neurospora and Drosophila. C. R. Acad. Sci. III 323: 57-67.

Gorton HL, Williams WE, Assmann SM 1993 Circadian rhythms in stomatal responsiveness to red and blue light. Plant Physiol. 103: 399-406.

Gould PD, Locke JC, Larue C, Southern MM, Davis SJ, Hanano S, Moyle R, Milich R, Putterill J, Millar AJ, Hall A 2006 The molecular basis of temperature compensation in the Arabidopsis circadian clock. Plant Cell 18: 1177-1187.

Granbom A, Chow F, Lopes PF, de Oliviera MC, Colepicolo P, de Paula EJ, Pedersen M 2004 Characterisation of nitrate reductase in the marine macroalga Kappaphycus alvarezii (Rhodophyta). Aquat. Bot. 78: 295-305.

Green RM, Tingay S, Wang ZY, Tobin EM 2002 Circadian rhythms confer a higher level of fitness to Arabidopsis plants. Plant Physiol. 129: 576-584.

Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ 2003 The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell 15: 2719-2729.

Hall A, Kozma-Bognar L, Bastow RM, Nagy F, Millar AJ 2002 Distinct regulation of CAB and PHYB gene expression by similar circadian clocks. Plant J. 32: 529-537.

Hall A, Kozma-Bognar L, Toth R, Nagy F, Millar AJ 2001 Conditional circadian regulation of PHYTOCHROME A gene expression. Plant Physiol. 127: 1808-1818.

Harmer SL, Kay SA 2005 Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17: 1926-1940.

Hartwell J 2005 The co-ordination of central plant metabolism by the circadian clock. Biochem. Soc. Trans. 33: 945-948.

Hatzimanikatis V, Lee KH 1999 Dynamical analysis of gene networks requires both mRNA and protein expression information. Metab. Eng. 1: 275-281.

Heintzen C, Fischer R, Melzer S, Kappeler K, Apel K, Staiger D 1994 Circadian oscillations of a transcript encoding a germin-like protein that is associated with cell walls in young leaves of the long-day plant Sinapis alba L. Plant Physiol. 106: 905-915.

Hernandez-Ruiz J, Cano A, Arnao MB 2004 Melatonin: a growth-stimulating compound present in lupin tissues. Planta 220: 140-144.

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Iliev D, Voytsekh O, Schmidt EM, Fiedler M, Nykytenko A, Mittag M 2006 A heteromeric RNA-binding protein is involved in maintaining acrophase and period of the circadian clock. Plant Physiol. 142: 797-806.

Ingalls BP 2004 Autonomously oscillating biochemical systems: parametric sensitivity of extrema and period. Syst. Biol. 1: 62-70.

Ishikawa M, Kiba T, Chua NH 2006 The Arabidopsis SPA1 gene is required for circadian clock function and photoperiodic flowering. Plant J. 46: 736-746.

Ivleva NB, Gao T, Liwang AC, Golden SS 2006 Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock. Proc. Natl. Acad. Sci. U.S.A. 103: 17468-17473.

Jacobshagen S, Kindle KL, Johnson CH 1996 Transcription of CABII is regulated by the biological clock in Chlamydomonas reinhardtii. Plant Mol. Biol. 31: 1173-1184..

Jakobsen HB, Christensen LP 2002 Diurnal changes in the concentrations of 2-phenylethyl beta-D-glucopyranoside and the corresponding volatile aglycone in the tissue and headspace of Trifolium repens L. florets. Plant Cell Environ. 25: 773-781.

Jones TL, Tucker DE, Ort DR 1998 Chilling delays circadian pattern of sucrose phosphate synthase and nitrate reductase activity in tomato. Plant Physiol. 118: 149-158.

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Kim HY, Cote GG, Crain RC 1996 Inositol 1,4,5-trisphosphate may mediate closure of K+ channels by light and darkness in Samanea saman motor cells. Planta 198: 279-287.

Kim SJ, Moon J, Lee I, Maeng J, Kim SR 2003 Molecular cloning and expression analysis of a CONSTANS homologue, PnCOL1, from Pharbitis nil. J. Exp. Bot. 54: 1879-1887.

Kolosova N, Gorenstein N, Kish CM, Dudareva N 2001 Regulation of circadian methyl benzoate emission in diurnally and nocturnally emitting plants. Plant Cell 13: 2333-2347.

Kruse E, Grimm B, Beator J, Kloppstech K 1997 Developmental and circadian control of the capacity for delta- aminolevulinic acid synthesis in green barley. Planta 202: 235-241.

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Miller RP, Martinson KB, Sothern RB, Durgan BR, Gunsolus JL 2003 Circadian response of annual weeds in a natural setting to high and low application rates of four herbicides with different modes of actions. Chronobiol. Int. 20: 299-324.

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Mizoguchi T, Wright L, Fujiwara S, Cremer F, Lee K, Onouchi H, Mouradov A, Fowler S, Kamada H, Putterill J, Coupland G 2005 Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. Plant Cell 17: 2255-2270.

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Moshelion M, Becker D, Biela A, Uehlein N, Hedrich R, Otto B, Levi H, Moran N, Kaldenhoff R 2002 Plasma membrane aquaporins in the motor cells of Samanea saman: diurnal and circadian regulation. Plant Cell 14: 727-739.

Moshelion M, Becker D, Czempinski K, Mueller-Roeber B, Attali B, Hedrich R, Moran N 2002 Diurnal and circadian regulation of putative potassium channels in a leaf moving organ. Plant Physiol. 128: 634-642.

Murakami M, Tago Y, Yamashino T, Mizuno T 2007 Comparative overviews as to clock-associated genes of Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol. 48: 110-121.

Nakajima Y, Ikeda M, Kimura T, Honma S, Ohmiya Y, Honma K 2004 Bidirectional role of orphan nuclear receptor RORalpha in clock gene transcriptions demonstrated by a novel reporter assay system. FEBS Lett. 565: 122-126.

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Nemchenko A, Kunze S, Feussner I, Kolomiets M 2006 Duplicate maize 13-lipoxygenase genes are differentially regulated by circadian rhythm, cold stress, wounding, pathogen infection, and hormonal treatments. J. Exp. Bot. 57: 3767-3779.

Oda A, Fujiwara S, Kamada H, Coupland G, Mizoguchi T 2004 Antisense suppression of the Arabidopsis PIF3 gene does not affect circadian rhythms but causes early flowering and increases FT expression. FEBS Lett. 557: 259-264.

Oda A, Sakuta C, Masuda S, Mizoguchi T, Kamada H, Satoh S 2003 Possible involvement of leaf gibberellins in the clock-controlled expression of XSP30, a gene encoding a xylem sap lectin, in cucumber roots. Plant Physiol. 133: 1779-1790.

Okamoto K, Onai K, Furusawa T, Ishiura M 2005 A portable integrated automatic apparatus for the real-time monitoring of bioluminescence in plants. Plant Cell Environ. 28: 1305-1315.

Onai K, Okamoto K, Nishimoto H, Morioka C, Hirano M, Kami-Ike N, Ishiura M 2004 Large-scale screening of Arabidopsis circadian clock mutants by a high-throughput real-time bioluminescence monitoring system. Plant J. 40: 1-11.

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Pilling E, Smith AM 2003 Growth ring formation in the starch granules of potato tubers. Plant Physiol. 132: 365-371.

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Reisdorph NA, Small GD 2004 The CPH1 gene of Chlamydomonas reinhardtii encodes two forms of cryptochrome whose levels are controlled by light-induced proteolysis. Plant Physiol. 134: 1546-1554.

Rieu I, Cristescu SM, Harren FJ, Huibers W, Voesenek LA, Mariani C, Vriezen WH 2005 RP-ACS1, a flooding-induced 1-aminocyclopropane-1-carboxylate synthase gene of Rumex palustris, is involved in rhythmic ethylene production. J. Exp. Bot. 56: 841-849.

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Salome PA, McClung CR 2005 PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock. Plant Cell 17: 791-803.

Salome PA, McClung CR 2005 What makes the Arabidopsis clock tick on time? A review on entrainment. Plant Cell Environ. 28: 21-38.

Salome PA, Michael TP, Kearns EV, Fett-Neto AG, Sharrock RA, McClung CR 2002 The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis. Plant Physiol. 129: 1674-1685.

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