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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, cold or chill

Abbasi AR, Saur A, Hennig P, Tschiersch H, Hajirezaei M, Hofius D, Sonnewald U, Voll LM. Tocopherol deficiency in transgenic tobacco (Nicotiana tabacum L.) plants leads to accelerated senescence. Plant Cell Environ. 32: 144-157 (2009).

Abbasi F, Onodera H, Toki S, Tanaka H, Komatsu S. OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath. Plant Mol. Biol. 55: 541-552 (2004).

Abe F, Saito K, Miura K, Toriyama K. A single nucleotide polymorphism in the alternative oxidase gene among rice varieties differing in low temperature tolerance. FEBS Lett. 527: 181-185 (2002).

Abee T, Wouters JA. Microbial stress response in minimal processing Int. J. Food Microbiol. 50: 65-91 (1999).

Abreu EF, Aragao FJ. Isolation and characterization of a myo-inositol-1-phosphate synthase gene from yellow passion fruit (Passiflora edulis f. flavicarpa) expressed during seed development and environmental stress. Ann. Bot. (Lond.) 99: 285-292 (2007).

Achard P, Gong F, Cheminant S, Alioua M, Hedden P, Genschik P. The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism. Plant Cell 20: 2117-2129 (2008).

Adnan S, Susan L, Weiss D. Isolation and characterization of a heat-induced gene, hcit2, encoding a novel 16.5 kDa protein: expression coincides with heat-induced tolerance to chilling stress. Plant Mol. Biol. 36: 935-939 (1998).

Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, Zhu JK. A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281: 37636-37645 (2006).

Agarwal PK, Agarwal P, Jain P, Jha B, Reddy MK, Sopory SK. Constitutive overexpression of a stress-inducible small GTP-binding protein PgRab7 from Pennisetum glaucum enhances abiotic stress tolerance in transgenic tobacco. Plant Cell Rep. 27: 105-115 (2008).

Ahsan N, Yoon HS, Jo J. Molecular cloning of a BcPGIP cDNA from Brassica campestris and its expression to several stresses. Plant Sci. 169: 1081-1089 (2005).

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Albrecht V, Weinl S, Blazevic D, D'Angelo C, Batistic O, Kolukisaoglu U, Bock R, Schulz B, Harter K, Kudla J. The calcium sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36: 457-470 (2003).

Alexandre CM, Hennig L. FLC or not FLC: the other side of vernalization. J. Exp. Bot. 59: 1127-1135 (2008).

Alger JR, Shulman RG. Metabolic applications of high resolution C-13 nuclear magnetic resonance spectroscopy. Brit. Med. Bull. 40: 160-164 (1984).

Alia, Hayashi H, Chen THH, Murata N. Transformation with a gene for choline oxidase enhances the cold tolerance of Arabidopsis during germination and early growth. Plant Cell Environ. 21: 232-239 (1998).

Alkio M, Schubert A, Diepenbrock W, Grimm E. Effect of source-sink ratio on seed set and filling in sunflower (Helianthus annuus L.). Plant Cell Environ. 26: 1609-1619 (2003).

Allan WL, Simpson JP, Clark SM, Shelp BJ. Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms. J. Exp. Bot. 59: 2555-2564 (2008).

Allard F, Houde M, Krol M, Ivanov A, Huner NPA, Sarhan F. Betaine improves freezing tolerance in wheat. Plant Cell Physiol. 39: 1194-1202 (1998).

Allmer J, Markert C, Stauber EJ, Hippler M. A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases. FEBS Lett. 562: 202-206 (2004).

Alonso C. Early blooming's challenges: extended flowering season, diverse pollinator assemblage and the reproductive success of Gynodioecious Daphne laureola. Ann. Bot. (Lond.) 93: 61-66 (2004).

Alonso-Blanco C, Gomez-Mena C, Llorente F, Koornneef M, Salinas J, Martinez-Zapater JM. Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol. 139: 1304-1312 (2005).

Alquati C, De Gioia L, Santarossa G, Alberghina L, Fantucci P, Lotti M. The cold-active lipase of Pseudomonas fragi. Heterologous expression, biochemical characterization and molecular modeling. Eur. J. Biochem. 269: 3321-3328 (2002).

Alsheikh MK, Svensson JT, Randall SK. Phosphorylation regulated ion-binding is a property shared by the acidic subclass dehydrins. Plant Cell Environ. 28: 1114-1122 (2005).

Aluru MR, Mazourek M, Landry LG, Curry J, Jahn M, O'Connell MA. Differential expression of fatty acid synthase genes, Acl, Fat and Kas, in Capsicum fruit. J. Exp. Bot. 54: 1655-1664 (2003).

Ambard-Bretteville F, Sorin C, Rebeille F, Hourton-Cabassa C, Colas des Francs-Small C. Repression of formate dehydrogenase in Solanum tuberosum increases steady-state levels of formate and accelerates the accumulation of proline in response to osmotic stress. Plant Mol. Biol. 52: 1153-1168 (2003).

Ameglio T, Cochard H, Ewers FW. Stem diameter variations and cold hardiness in walnut trees. J. Exp. Bot. 52: 2135-2142 (2001).

Amme S, Matros A, Schlesier B, Mock HP. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J. Exp. Bot. 57: 1537-1546 (2006).

Anastassopoulos E, Panopoulos NJ. In vitro freezing in microtitre plates applied to tobacco plants transformed with the inaZ gene of Pseudomonas syringae. J. Exp. Bot. 53: 1887-1890 (2002).

Anderson JV, Davis DG. Abiotic stress alters transcript profiles and activity of glutathione S-transferase, glutathione peroxidase, and glutathione reductase in Euphorbia esula. Physiol. Plant. 120: 421-433 (2004).

Anderson JV, Gesch RW, Jia Y, Chao WS, Horvath DP. Seasonal shifts in dormancy status, carbohydrate metabolism, and related gene expression in crown buds of leafy spurge. Plant Cell Environ. 28: 1567-1578 (2005).

Anderson JV, Li QB, Haskell DW, Guy CL. Structural organization of the spinach endoplasmic reticulum-luminal 70-kilodalton heat-shock cognate gene and expression of 70-kilodalton heat-shock genes during cold acclimation. Plant Physiol. 104: 1359-1370 (1994).

Anderson MD, Prasad TK, Stewart CR. Changes in isozyme profiles of catalase, peroxidase, and glutathione reductase during acclimation to chilling in mesocotyls of maize seedlings. Plant Physiol. 109: 1247-1257 (1995).

Andriotis VM, Ross JD. Isolation and partial characterisation of acid phosphatase isozymes from dormant oilseed of Corylus avellana L. Planta 219: 346-358 (2004).

Andriotis VM, Smith SB, Ross JD. Phytic acid mobilization is an early response to chilling of the embryonic axes from dormant oilseed of hazel (Corylus avellana). J. Exp. Bot. 56: 537-545 (2005).

Angelidis AS, Smith GM. Role of the glycine betaine and carnitine transporters in adaptation of Listeria monocytogenes to chill stress in defined medium. Appl. Environ. Microbiol. 69: 7492-7498 (2003).

Angelidis AS, Smith LT, Hoffman LM, Smith GM. Identification of opuC as a chill-activated and osmotically activated carnitine transporter in Listeria monocytogenes. Appl. Environ. Microbiol. 68: 2644-2650 (2002).

Angelidis AS, Smith LT, Smith GM. Elevated carnitine accumulation by Listeria monocytogenes impaired in glycine betaine transport is insufficient to restore wild-type cryotolerance in milk whey. Int. J. Food Microbiol. 75: 1-9 (2002).

Anke M, Seifert M. The biological and toxicological importance of molybdenum in the environment and in the nutrition of plants, animals and man. Part 1: Molybdenum in plants. Acta Biol. Hung. 58: 311-324 (2007).

Annamalai T, Venkitanarayanan K. Role of proP and proU in betaine uptake by Yersinia enterocolitica under cold and osmotic stress conditions. Appl. Environ. Microbiol. 75: 1471-1477 (2009).

Antoine W, Stewart JM, de los Reyes BG. The rice homolog of the sodium/lithium tolerance gene functions as molecular chaperon in vitro. Physiol. Plant. 125: 299-310 (2005).

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Armstrong AF, Badger MR, Day DA, Barthet MM, Smith PM, Millar AH, Whelan J, Atkin OK. Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration. Plant Cell Environ. 31: 1156-1169 (2008).

Armstrong AF, Logan DC, Tobin AK, O'Toole P, Atkin OK. Heterogeneity of plant mitochondrial responses underpinning respiratory acclimation to the cold in Arabidopsis thaliana leaves. Plant Cell Environ. 29: 940-949 (2006).

Armstrong AF, Wardlaw KD, Atkin OK. Assessing the relationship between respiratory acclimation to the cold and photosystem II redox poise in Arabidopsis thaliana. Plant Cell Environ. 30: 1513-1522 (2007).

Aroca R, Amodeo G, Fernandez-Illescas S, Herman EM, Chaumont F, Chrispeels MJ. The role of aquaporins and membrane damage in chilling and hydrogen peroxide induced changes in the hydraulic conductance of maize roots. Plant Physiol. 137: 341-353 (2005).

Aronsson H, Boij P, Patel R, Wardle A, Topel M, Jarvis P. Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana. Plant J. 52: 53-68 (2007).

Arora R, Wisniewski ME. Cold acclimation in genetically related (sibling) deciduous and evergreen peach (Prunus persica [L.] Batsch). II. A 60-kilodalton bark protein in cold-acclimated tissues of peach is heat stable and related to the dehydrin family of proteins. Plant Physiol. 105: 95-101 (1994).

Asega AF, Nascimento JR, Schroeven L, Ende WV, Carvalho MA. Cloning, characterization and functional analysis of a 1-FEH cDNA from Vernonia herbacea (Vell.) Rusby. Plant Cell Physiol. 49: 1185-1195 (2008).

Assmann SM. OPEN STOMATA1 opens the door to ABA signaling in Arabidopsis guard cells. Trends Plant Sci. 8: 151-153 (2003).

Athma P, Grotewold E, Peterson T. Insertional mutagenesis of the maize P gene by intragenic transposition of Ac. Genetics 131: 199-209 (1992).

Atici O, Nalbantoglu B. Antifreeze proteins in higher plants. Phytochemistry 64: 1187-1196 (2003).

Austin PT, Hall AJ, Snelgar WP, Currie MJ. Modelling kiwifruit budbreak as a function of temperature and bud interactions. Ann. Bot. (Lond.) 89: 695-706 (2002).

Avsian-Kretchmer O, Eshdat Y, Gueta-Dahan Y, Ben-Hayyim G. Regulation of stress-induced phospholipid hydroperoxide glutathione peroxidase expression in citrus. Planta 209: 469-477 (1999).

Badawi M, Reddy YV, Agharbaoui Z, Tominaga Y, Danyluk J, Sarhan F, Houde M. Structure and functional analysis of wheat ICE (Inducer of CBF Expression) genes. Plant Cell Physiol. 49: 1237-1249 (2008).

Badger MR, Price GD, Long BM, Woodger FJ. The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism. J. Exp. Bot. 57: 249-265 (2006).

Bae MS, Cho EJ, Choi EY, Park OK. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 36: 652-663 (2003).

Baker KS, Steadman KJ, Plummer JA, Merritt DJ, Dixon KW. The changing window of conditions that promotes germination of two fire ephemerals, Actinotus leucocephalus (Apiaceae) and Tersonia cyathiflora (Gyrostemonaceae). Ann. Bot. (Lond.) 96: 1225-1236 (2005).

Bakht J, Bano A, Dominy P. The role of abscisic acid and low temperature in chickpea (Cicer arietinum) cold tolerance. II. Effects on plasma membrane structure and function. J. Exp. Bot. 57: 3707-3715 (2006).

Baldi P, Grossi M, Pecchioni N, Vale G, Cattivelli L. High expression level of a gene coding for a chloroplastic amino acid selective channel protein is correlated to cold acclimation in cereals. Plant Mol. Biol. 41: 233-243 (1999).

Balk PA, de Boer AD. Rapid stalk elongation in tulip (Tulipa gesneriana L. cv. Apeldoorn) and the combined action of cold-induced invertase and the water-channel protein gammaTIP. Planta 209: 346-354 (1999).

Ballere CL. Circadian maestro leads plant gene expression symphony. Trends Plant Sci. 6: 96-97 (2001).

Baluska F, Hlavacka A, Samaj J, Palme K, Robinson DG, Matoh T, McCurdy DW, Menzel D, Volkmann D. F-actin-dependent endocytosis of cell wall pectins in meristematic root cells. Insights from brefeldin A-induced compartments. Plant Physiol. 130: 422-431 (2002).

Baptist F, Tcherkez G, Aubert S, Pontailler JY, Choler P, Nogués S. 13C and 15N allocations of two alpine species from early and late snowmelt locations reflect their different growth strategies. J. Exp. Bot. 60: 2725-2735 (2009).

Bar-Peled M, Conceicao A, Frigerio L, Raikhel NV. Expression and regulation of aERD2, a gene encoding the KDEL receptor homolog in plants, and other genes encoding proteins involved in ER-golgi vesicular trafficking. Plant Cell 7: 667-676 (1995).

Bar-Peled M, Raikhel NV. Characterization of AtSEC12 and AtSAR1. Proteins likely involved in endoplasmic reticulum and Golgi transport. Plant Physiol. 114: 315-324 (1997).

Barkan L, Vijayan P, Carlsson AS, Mekhedov S, Browse J. A suppressor of fab1 challenges hypotheses on the role of thylakoid unsaturation in photosynthetic function. Plant Physiol. 141: 1012-1020 (2006).

Barker DH, Adams WW, Demmig-Adams B, Logan BA, Verhoeven AS, Smith SD. Nocturnally retained zeaxanthin does not remain engaged in a state primed for energy dissipation during the summer in two Yucca species growing in the Mojave Desert. Plant Cell Environ. 25: 95-103 (2002).

Barker DH, Loveys BR, Egerton JJG, Gorton H, Williams WE, Ball MC. CO2 enrichment predisposes foliage of a eucalypt to freezing injury and reduces spring growth. Plant Cell Environ. 28: 1506-1515 (2005).

Barth O, Vogt S, Uhlemann R, Zschiesche W, Humbeck K. Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29. Plant Mol. Biol. 69: 213-226 (2009).

Barth O, Zschiesche W, Siersleben S, Humbeck K. Isolation of a novel barley cDNA encoding a nuclear protein involved in stress response and leaf senescence. Physiol. Plant. 121: 282-293 (2004).

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Bassett CL, Wisniewski ME, Artlip TS, Richart G, Norelli JL, Farrell RE Jr. Comparative expression and transcript initiation of three peach dehydrin genes. Planta 230: 107-118 (2009).

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Baud S, Vaultier MN, Rochat C. Structure and expression profile of the sucrose synthase multigene family in Arabidopsis. J. Exp. Bot. 55: 397-409 (2004).

Baumbusch LO, Hughes DW, Galau GA, Jakobsen KS. LEC1, FUS3, ABI3 and Em expression reveals no correlation with dormancy in Arabidopsis. J. Exp. Bot. 55: 77-87 (2004).

Beck EH, Fettig S, Knake C, Hartig K, Bhattarai T. Specific and unspecific responses of plants to cold and drought stress. J. Biosci. 32: 501-510 (2007).

Beck EH, Heim R, Hansen J. Plant resistance to cold stress: mechanisms and environmental signals triggering frost hardening and dehardening. J. Biosci. 29: 449-459 (2004).

Bell KS, Sebaihia M, Pritchard L, Holden MT, Hyman LJ, Holeva MC, Thomson NR, Bentley SD, Churcher LJ, Mungall K, Atkin R, Bason N, Brooks K, Chillingworth T, Clark K, Doggett J, Fraser A, Hance Z, Hauser H, Jagels K, Moule S, Norbertczak H, et al. Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. Proc. Natl. Acad. Sci. U.S.A. 101: 11105-11110 (2004).

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Breton G, Danyluk J, Charron JB, Sarhan F. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Plant Physiol. 132: 64-74 (2003).

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Brodribb TJ, Hill RS. Increases in water potential gradient reduce xylem conductivity in whole plants. Evidence from a low-pressure conductivity method. Plant Physiol. 123: 1021-1028 (2000).

Browse J, Lange BM. Counting the cost of a cold-blooded life: metabolomics of cold acclimation. Proc. Natl. Acad. Sci. U.S.A. 101: 14996-14997 (2004).

Browse J, Xin Z. Temperature sensing and cold acclimation. Curr. Opin. Plant Biol. 4: 241-246 (2001).

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Bubier J, Schlappi M. Cold induction of EARLI1, a putative Arabidopsis lipid transfer protein, is light and calcium dependent. Plant Cell Environ. 27: 929-936 (2004).

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Byun YJ, Kim HJ, Lee DH. LongSAGE analysis of the early response to cold stress in Arabidopsis leaf. Planta 229: 1181-1200 (2009).

Cai H, Zhou Y, Xiao J, Li X, Zhang Q, Lian X. Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice. Plant Cell Rep. 28: 527-537 (2009).

Cai Q, Aitken KS, Fan YH, Piperidis G, Jackson P, McIntyre CL. A preliminary assessment of the genetic relationship between Erianthus rockii and the "Saccharum complex" using microsatellite (SSR) and AFLP markers. Plant Sci. 169: 976-984 (2005).

Cai ZQ, Chen YJ, Bongers F. Seasonal changes in photosynthesis and growth of Zizyphus attopensis seedlings in three contrasting microhabitats in a tropical seasonal rain forest. Tree Physiol. 27: 827-836 (2007).

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David Rhodes
Department of Horticulture & Landscape Architecture
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Last Update: 10/01/09