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Nitrate Assimilation
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HORT640 - Metabolic Plant Physiology

References, carbonic anhydrase

Aivalakis G, Dimou M, Flemetakis E, Plati F, Katinakis P, Drossopoulos JB 2004 Immunolocalization of carbonic anhydrase and phosphoenolpyruvate carboxylase in developing seeds of Medicago sativa. Plant Physiol. Biochem. 42: 181-186.

Alper SL 2006 Molecular physiology of SLC4 anion exchangers. Exp. Physiol. 91: 153-161.

Arsene-Ploetze F, Bringel F 2004 Role of inorganic carbon in lactic acid bacteria metabolism. Lait 84: 49-59.

Badger MR, Price GD 2003 CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution. J. Exp. Bot. 54: 609-622.

Badger MR, Price GD, Long BM, Woodger FJ 2006 The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism. J. Exp. Bot. 57: 249-265.

Bernacchi CJ, Portis AR, Nakano H, Von Caemmerer S, Long SP 2002 Temperature response of mesophyll conductance. Implications for the determination of Rubisco enzyme kinetics and for limitations to photosynthesis in vivo. Plant Physiol. 130: 1992-1998.

Bozzo GG, Colman B 2000 The induction of inorganic carbon transport and external carbonic anhydrase in Chlamydomonas reinhardtii is regulated by external CO2 concentration. Plant Cell Environ. 23: 1137-1144.

Bozzo GG, Colman B, Matsuda Y 2000 Active transport of CO2 and bicarbonate is induced in response to external CO(2) concentration in the green alga Chlorella kessleri. J. Exp. Bot. 51: 1341-1348.

Brownell PF, Bielig LM, Grof CPL 1991 Increased carbonic anhydrase activity in leaves of sodium- deficient C4 plants. Aust. J. Plant Physiol. 18: 589-592.

Burnell JN, Hatch MD 1988 Low bundle sheath carbonic anhydrase is apparently essential for effective C4 pathway operation. Plant Physiol. 86: 1252-1256.

Carter CJ, Thornburg RW 2004 Tobacco Nectarin III is a bifunctional enzyme with monodehydroascorbate reductase and carbonic anhydrase activities. Plant Mol. Biol. 54: 415-425.

Carvalho HG, Lopes-Cardoso IA, Lima LM, Melo PM, Cullimore JV 2003 Nodule-specific modulation of glutamine synthetase in transgenic Medicago truncatula leads to inverse alterations in asparagine synthetase expression. Plant Physiol. 133: 243-252.

Cernusak LA, Farquhar GD, Wong SC, Stuart-Williams H 2004 Measurement and interpretation of the oxygen isotope composition of carbon dioxide respired by leaves in the dark. Plant Physiol. 136: 3350-3363.

Christianson DW, Cox JD 1999 Catalysis by metal-activated hydroxide in zinc and manganese metalloenzymes. Annu. Rev. Biochem. 68: 33-57.

Colebatch G, Kloska S, Trevaskis B, Freund S, Altmann T, Udvardi MK 2002 Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays. Mol. Plant Microbe Interact. 15: 411-420.

Cousins AB, Badger MR, von Caemmerer S 2006 A transgenic approach to understanding the influence of carbonic anhydrase on C18OO discrimination during C4 photosynthesis. Plant Physiol. 142: 662-672.

Cousins AB, Badger MR, von Caemmerer S 2006 Carbonic anhydrase and its influence on carbon isotope discrimination during C4 photosynthesis. Insights from antisense RNA in Flaveria bidentis. Plant Physiol. 141: 232-242.

Dembitsky VM, Levitsky DO 2004 Arsenolipids. Prog. Lipid Res. 43: 403-448.

Diekmann S, Weston J, Anders E, Boland W, Schonecker B, Hettmann T, von Langen J, Erhardt S, Mauksch M, Brauer M, Beckmann C, Rost M, Sperling P, Heinz E 2002 Metal-mediated reactions modeled after nature. J. Biotechnol. 90: 73-94.

Dodd FE, Van Beeumen J, Eady RR, Hasnain SS 1998 X-ray structure of a blue-copper nitrite reductase in two crystal forms. The nature of the copper sites, mode of substrate binding and recognition by redox partner. J. Mol. Biol. 282: 369-382.

Dwyer SA, Ghannoum O, Nicotra A, von Caemmerer S 2007 High temperature acclimation of C4 photosynthesis is linked to changes in photosynthetic biochemistry. Plant Cell Environ. 30: 53-66.

Ellis MJ, Prudencio M, Dodd FE, Strange RW, Sawers G, Eady RR, Hasnain SS 2002 Biochemical and crystallographic studies of the Met144Ala, Asp92Asn and His254Phe mutants of the nitrite reductase from Alcaligenes xylosoxidans provide insight into the enzyme mechanism. J. Mol. Biol. 316: 51-64.

Escassi L, Aguilera J, Figueroa FL, Fernandez JA 2002 Potassium drives daily reversible thallus enlargement in the marine red alga Porphyra leucosticta (Rhodophyta). Planta 214: 759-766.

Faccioli P, Pecchioni N, Cattivelli L, Stanca AM, Terzi V 2001 Expressed sequence tags from cold-acclimatized barley can identify novel plant genes. Plant Breed. 120: 497-502.

Fariduddin Q, Hayat S, Ahmad A 2003 Salicylic acid influences net photosynthetic rate, carboxylation efficiency, nitrate reductase activity, and seed yield in Brassica juncea. Photosynthetica 41: 281-284.

Fett JP, Coleman JR 1994 Characterization and expression of two cDNAs encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol. 105: 707-713.

Funke RP, Kovar JL, Weeks DP 1997 Intracellular carbonic anhydrase is essential to photosynthesis in Chlamydomonas reinhardtii at atmospheric levels of CO2. Demonstration via genomic complementation of the high-CO2-requiring mutant ca-1. Plant Physiol. 114: 237-244.

Galvez S, Hirsch AM, Wycoff KL, Hunt S, Layzell DB, Kondorosi A, Crespi M 2000 Oxygen regulation of a nodule-located carbonic anhydrase in alfalfa. Plant Physiol. 124: 1059-1068.

Gillon JS, Yakir D 2000 Internal conductance to CO(2) diffusion and C(18)O2 discrimination in C(3) leaves. Plant Physiol. 123: 201-214.

Gillon JS, Yakir D 2000 Naturally low carbonic anhydrase activity in C4 and C3 plants limits discrimination against C18OO during photosynthesis. Plant Cell Environ. 23: 903-915.

Giordano M, Norici A, Forssen M, Eriksson M, Raven JA 2003 An anaplerotic role for mitochondrial carbonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol. 132: 2126-2134.

Giordano M, Pezzoni V, Hell R 2000 Strategies for the allocation of resources under sulfur limitation in the green alga Dunaliella salina. Plant Physiol. 124: 857-864.

Gordillo FJ, Aguilera J, Jimenez C 2006 The response of nutrient assimilation and biochemical composition of Arctic seaweeds to a nutrient input in summer. J. Exp. Bot. 57: 2661-2671.

Hacisalihoglu G, Hart JJ, Vallejos CE, Kochian LV 2004 The role of shoot-localized processes in the mechanism of Zn efficiency in common bean. Planta 218: 704-711.

Hacisalihoglu G, Hart JJ, Wang YH, Cakmak I, Kochian LV 2003 Zinc efficiency is correlated with enhanced expression and activity of zinc-requiring enzymes in wheat. Plant Physiol. 131: 595-602.

Hanson DT, Franklin LA, Samuelsson G, Badger MR 2003 The Chlamydomonas reinhardtii cia3 mutant lacking a thylakoid lumen-localized carbonic anhydrase is limited by CO2 supply to Rubisco and not photosystem II function in vivo. Plant Physiol. 132: 2267-2275.

Harada H, Nakajima K, Sakaue K, Matsuda Y 2006 CO2 sensing at ocean surface mediated by cAMP in a marine diatom. Plant Physiol. 142: 1318-1328.

Harada H, Nakatsuma D, Ishida M, Matsuda Y 2005 Regulation of the expression of intracellular {beta}-carbonic anhydrase in response to CO2 and light in the marine diatom Phaeodactylum tricornutum. Plant Physiol. 139: 1041-1050.

Hatch MD 1991 Carbonic anhydrase assay: strong inhibition of the leaf enzyme by CO2 in certain buffers. Anal. Biochem. 192: 85-89.

Hatch MD, Burnell JN 1990 Carbonic anhydrase activity in leaves and its role in the first step of C4 photosynthesis. Plant Physiol. 93: 825-828.

Hiltonen T, Bjorkbacka H, Forsman C, Clarke AK, Samuelsson G 1998 Intracellular beta-carbonic anhydrase of the unicellular green alga Coccomyxa. Cloning of the cDNA and characterization of the functional enzyme overexpressed in Escherichia coli. Plant Physiol. 117: 1341-1349.

Hiltonen T, Karlsson J, Palmqvist K, Clarke AK, Samuelsson G 1995 Purification and characterisation of an intracellular carbonic anhydrase from the unicellular green alga Coccomyxa. Planta 195: 345-351.

Hinchman SK, Schuster SM 1992 Overproduction, preparation of monoclonal antibodies and purification of E. coli asparagine synthetase A. Protein Eng. 5: 279-283.

Hoang CV, Chapman KD 2002 Biochemical and molecular inhibition of plastidial carbonic anhydrase reduces the incorporation of acetate into lipids in cotton embryos and tobacco cell suspensions and leaves. Plant Physiol. 128: 1417-1427.

Hoang CV, Chapman KD 2002 Regulation of carbonic anhydrase gene expression in cotyledons of cotton (Gossypium hirsutum L.) seedlings during post-germinative growth. Plant Mol. Biol. 49: 449-458.

Huertas IE, Colman B, Espie GS 2002 Mitochondrial-driven bicarbonate transport supports photosynthesis in a marine microalga. Plant Physiol. 130: 284-291.

Huertas IE, Espie GS, Colman B 2002 The energy source for CO2 transport in the marine microalga Nannochloris atomus. Planta 214: 947-953.

Huertas IE, Espie GS, Colman B, Lubian LM 2000 Light-dependent bicarbonate uptake and CO2 efflux in the marine microalga Nannochloropsis gaditana. Planta 211: 43-49.

Im CS, Grossman AR 2002 Identification and regulation of high light-induced genes in Chlamydomonas reinhardtii. Plant J. 30: 301-313.

Inada N, Wildermuth MC 2005 Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf. Planta 221: 9-16.

Jebanathirajah JA, Coleman JR 1998 Association of carbonic anhydrase with a Calvin cycle enzyme complex in Nicotiana tabacum. Planta 204: 177-182.

Jiao D, Huang X, Li X, Chi W, Kuang T, Zhang Q, Ku MS, Cho D 2002 Photosynthetic characteristics and tolerance to photo-oxidation of transgenic rice expressing C(4) photosynthesis enzymes. Photosynth. Res. 72: 85-93.

Karlsson J, Hiltonen T, Husic HD, Ramazanov Z, Samuelsson G 1995 Intracellular carbonic anhydrase of Chlamydomonas reinhardtii. Plant Physiol. 109: 533-539.

Khristin MS, Ignatova LK, Rudenko NN, Ivanov BN, Klimov VV 2004 Photosystem II associated carbonic anhydrase activity in higher plants is situated in core complex. FEBS Lett. 577: 305-308.

Kim HJ, Bracey MH, Bartlett SG 1994 Nucleotide sequence of a gene encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol. 105: 449.

Kozlowska-Szerenos B, Bialuk I, Maleszewski S 2004 Enhancement of photosynthetic O2 evolution in Chlorella vulgaris under high light and increased CO2 concentration as a sign of acclimation to phosphate deficiency. Plant Physiol. Biochem. 42: 403-409.

Kucho K, Yoshioka S, Taniguchi F, Ohyama K, Fukuzawa H 2003 Cis-acting elements and DNA-binding proteins involved in CO2-responsive transcriptional activation of Cah1 encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol. 133: 783-793.

Kucho Ki, Ohyama K, Fukuzawa H 1999 CO2-responsive transcriptional regulation of CAH1 encoding carbonic anhydrase is mediated by enhancer and silencer regions in Chlamydomonas reinhardtii. Plant Physiol. 121: 1329-1338.

Lane TW, Morel FM 2000 Regulation of carbonic anhydrase expression by zinc, cobalt, and carbon dioxide in the marine diatom Thalassiosira weissflogii. Plant Physiol. 123: 345-352.

Larsson S, Bjorkbacka H, Forsman C, Samuelsson G, Olsson O 1997 Molecular cloning and biochemical characterization of carbonic anhydrase from Populus tremula x tremuloides. Plant Mol. Biol. 34: 583-592.

Leggat W, Badger MR, Yellowlees D 1999 Evidence for an inorganic carbon-concentrating mechanism in the symbiotic dinoflagellate Symbiodinium sp. Plant Physiol. 121: 1247-1256.

Leggat W, Buck BH, Grice A, Yellowlees D 2003 The impact of bleaching on the metabolic contribution of dinoflagellate symbionts to their giant clam host. Plant Cell Environ. 26: 1951-1961.

Llamas A, Igeno MI, Galvan A, Fernandez E 2002 Nitrate signalling on the nitrate reductase gene promoter depends directly on the activity of the nitrate transport systems in Chlamydomonas. Plant J. 30: 261-271.

Lu YK, Stemler AJ 2002 Extrinsic photosystem II carbonic anhydrase in maize mesophyll chloroplasts. Plant Physiol. 128: 643-649.

Ludwig M, von Caemmerer S, Dean Price G, Badger MR, Furbank RT 1998 Expression of tobacco carbonic anhydrase in the C4 dicot flaveria bidentis leads to increased leakiness of the bundle sheath and a defective CO2-concentrating mechanism. Plant Physiol. 117: 1071-1081.

Miller BG, Wolfenden R 2002 Catalytic proficiency: the unusual case of OMP decarboxylase. Annu. Rev. Biochem. 71: 847-885.

Mitra M, Lato SM, Ynalvez RA, Xiao Y, Moroney JV 2004 Identification of a new chloroplast carbonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol. 135: 173-182.

Moeckel GW, Lien YH 1994 Bicarbonate dependency of betaine synthesis in cultured LLC-PK1 cells. Am. J. Physiol. 266: F512-F515.

Moroney JV, Bartlett SG, Samuelsson G 2001 Carbonic anhydrases in plants and algae. Plant Cell Environ. 24: 141-153.

Ndong C, Danyluk J, Huner NP, Sarhan F 2001 Survey of gene expression in winter rye during changes in growth temperature, irradiance or excitation pressure. Plant Mol. Biol. 45: 691-703.

Nimer NA, Brownlee C, Merrett MJ 1999 Extracellular carbonic anhydrase facilitates carbon dioxide availability for photosynthesis in the marine dinoflagellate Prorocentrum micans. Plant Physiol. 120: 105-112.

Oja V, Savchenko G, Jakob B, Heber U 1999 pH and buffer capacities of apoplastic and cytoplasmic cell compartments in leaves. Planta 209: 239-249.

Orvar BL, McPherson J, Ellis BE 1997 Pre-activating wounding response in tobacco prior to high-level ozone exposure prevents necrotic injury. Plant J. 11: 203-212.

Parisi G, Perales M, Fornasari MS, Colaneri A, Gonzalez-Schain N, Gomez-Casati D, Zimmermann S, Brennicke A, Araya A, Ferry JG, Echave J, Zabaleta E 2004 Gamma carbonic anhydrases in plant mitochondria. Plant Mol. Biol. 55: 193-207.

Perales M, Parisi G, Fornasari MS, Colaneri A, Villarreal F, Gonzalez-Schain N, Echave J, Gomez-Casati D, Braun HP, Araya A, Zabaleta E 2004 Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I. Plant Mol. Biol. 56: 947-957.

Piermarini PM, Kim EY, Boron WF 2007 Evidence against a direct interaction between intracellular carbonic anhydrase II and pure C-terminal domains of SLC4 bicarbonate transporters. J. Biol. Chem. 282: 1409-1421.

Raines CA, Horsnell PR, Holder C, Lloyd JC 1992 Arabidopsis thaliana carbonic anhydrase: cDNA sequence and effect of CO2 on mRNA levels. Plant Mol. Biol. 20: 1143-1148.

Ramazanov Z, Mason CB, Geraghty AM, Spalding MH, Moroney JV 1993 The low CO2-inducible 36-kilodalton protein is localized to the chloroplast envelope of Chlamydomonas reinhardtii. Plant Physiol. 101: 1195-1199.

Rigobello-Masini M, Masini JC, Aidar E 2006 The profiles of nitrate reductase and carbonic anhydrase activity in batch cultivation of the marine microalgae Tetraselmis gracilis growing under different aeration conditions. FEMS Microbiol. Ecol. 57: 18-25.

Rost B, Richter KU, Riebesell U, Hansen PJ 2006 Inorganic carbon acquisition in red tide dinoflagellates. Plant Cell Environ. 29: 810-822.

Rumeau D, Cuine S, Fina L, Gault N, Nicole M, Peltier G 1996 Subcellular distribution of carbonic anhydrase in Solanum tuberosum L. leaves: characterization of two compartment-specific isoforms. Planta 199: 79-88.

Sasaki H, Hirose T, Watanabe Y, Ohsugi R 1998 Carbonic anhydrase activity and CO2-transfer resistance in Zn-deficient rice leaves. Plant Physiol. 118: 929-934.

Satoh A, Iwasaki T, Odani S, Shiraiwa Y 1998 Purification, characterization and cDNA cloning of soluble carbonic anhydrase from Chlorella sorokiniana grown under ordinary air. Planta 206: 657-665.

Satoh D, Hiraoka Y, Colman B, Matsuda Y 2001 Physiological and molecular biological characterization of intracellular carbonic anhydrase from the marine diatom Phaeodactylum tricornutum. Plant Physiol. 126: 1459-1470.

Savchenko G, Wiese C, Neimanis S, Hedrich R, Heber U 2000 pH regulation in apoplastic and cytoplasmic cell compartments of leaves. Planta 211: 246-255.

Serikawa KA, Porterfield DM, Mandoli DF 2001 Asymmetric subcellular mRNA distribution correlates with carbonic anhydrase activity in Acetabularia acetabulum. Plant Physiol. 125: 900-911.

Shewry PR 2003 Tuber storage proteins. Ann. Bot. (Lond.) 91: 755-769.

Sly WS, Hu PY 1995 Human carbonic anhydrases and carbonic anhydrase deficiencies. Annu. Rev. Biochem. 64: 375-401.

So AK, Espie GS 1998 Cloning, characterization and expression of carbonic anhydrase from the cyanobacterium Synechocystis PCC6803. Plant Mol. Biol. 37: 205-215.

So AK, John-McKay M, Espie GS 2002 Characterization of a mutant lacking carboxysomal carbonic anhydrase from the cyanobacterium Synechocystis PCC6803. Planta 214: 456-467.

Stabenau H, Winkler U 2005 Glycolate metabolism in green algae. Physiol. Plant. 123: 235-245.

Strange RW, Dodd FE, Abraham ZH, Grossmann JG, Bruser T, Eady RR, Smith BE, Hasnain SS 1995 The substrate-binding site in Cu nitrite reductase and its similarity to Zn carbonic anhydrase. Nat. Struct. Biol. 2: 287-292.

Sugiharto B, Suzuki I, Burnell JN, Sugiyama T 1992 Glutamine induces the N-dependent accumulation of mRNAs encoding phosphoenolpyruvate carboxylase and carbonic anhydrase in detached maize leaf tissue. Plant Physiol. 100: 2066-2070.

Sunderhaus S, Dudkina N, Jansch L, Klodmann J, Heinemeyer J, Perales M, Zabaleta E, Boekema E, Braun HP 2006 Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. J. Biol. Chem. 281: 6482-6488.

Tanaka Y, Nakatsuma D, Harada H, Ishida M, Matsuda Y 2005 Localization of soluble {beta}-carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Sorting to the chloroplast and cluster formation on the girdle lamellae. Plant Physiol. 138: 207-217.

Thumann J, Grill E, Winnacker EL, Zenk MH 1991 Reactivation of metal-requiring apoenzymes by phytochelatin-metal complexes. FEBS Lett. 284: 66-69.

Thyssen C, Hermes M, Sultemeyer D 2003 Isolation and characterisation of Chlamydomonas reinhardtii mutants with an impaired CO2-concentrating mechanism. Planta 217: 102-112.

Van K, Spalding MH 1999 Periplasmic carbonic anhydrase structural gene (Cah1) mutant in Chlamydomonas reinhardtii. Plant Physiol. 120: 757-764.

Van K, Wang Y, Nakamura Y, Spalding MH 2001 Insertional mutants of Chlamydomonas reinhardtii that require elevated CO(2) for survival. Plant Physiol. 127: 607-614.

Villand P, Eriksson M, Samuelsson G 1997 Carbon dioxide and light regulation of promoters controlling the expression of mitochondrial carbonic anhydrase in Chlamydomonas reinhardtii. Biochem. J. 327: 51-57.

Villarejo A, Rolland N, Martinez F, Sultemeyer DF 2001 A new chloroplast envelope carbonic anhydrase activity is induced during acclimation to low inorganic carbon concentrations in Chlamydomonas reinhardtii. Planta 213: 286-295.

Von Caemmerer S, Quinn V, Hancock NC, Price GD, Furbank RT, Ludwig M 2004 Carbonic anhydrase and C-4 photosynthesis: a transgenic analysis. Plant Cell Environ. 27: 697-703.

Williams TG, Colman B 1993 Identification of distinct internal and external isozymes of carbonic anhydrase in Chlorella saccharophila. Plant Physiol. 103: 943-948.

Yin ZH, Heber U, Raghavendra AS 1993 Light-induced pH changes in leaves of C4 plants. Comparison of cytosolic alkalization and vacuolar acidification with that of C3 plants. Planta 189: 267-277.

Yoshioka S, Taniguchi F, Miura K, Inoue T, Yamano T, Fukuzawa H 2004 The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell 16: 1466-1477.

Number of references = 105

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