Agger T, Petersen JB, O'Connor SM, Murphy RL, Kelly JM, Nielsen J. Physiological characterisation of recombinant Aspergillus nidulans strains with different creA genotypes expressing A. oryzae alpha-amylase. J. Biotechnol. 92: 279-285 (2002).

Ahuja M, Punekar NS. Phosphinothricin resistance in Aspergillus niger and its utility as a selectable transformation marker. Fungal Genet. Biol. 45: 1103-1110 (2008).

Aleksenko A, Liu W, Gojkovic Z, Nielsen J, Piskur J. Aspergillus nidulans and the evolutionary origin of fungal dihydroorotases. Mol. Microbiol. 33: 599-611 (1999).

Alvarez-Vasquez F, Gonzalez-Alcon C, Torres NV. Metabolism of citric acid production by Aspergillus niger: model definition, steady-state analysis and constrained optimization of citric acid production rate. Biotechnol. Bioeng. 70: 82-108 (2000).

Amaar YG, Moore MM. Mapping of the nitrate-assimilation gene cluster (crnA-niiA-niaD) and characterization of the nitrite reductase gene (niiA) in the opportunistic fungal pathogen Aspergillus fumigatus. Curr. Genet. 33: 206-215 (1998).

Amarasinghe BH, de Bruxelles GL, Braddon M, Onyeocha I, Forde BG, Udvardi MK. Regulation of GmNRT2 expression and nitrate transport activity in roots of soybean (Glycine max). Planta 206: 44-52 (1998).

Amey RC, Athey-Pollard A, Mills PR, Foster GD, Bailey A. Investigations into the taxonomy of the mushroom pathogen Verticillium fungicola and its relatives based on sequence analysis of nitrate reductase and ITS regions. Mikrobiologiia 76: 853-864 (2007).

Amrani L, Primus J, Glatigny A, Arcangeli L, Scazzocchio C, Finnerty V. Comparison of the sequences of the Aspergillus nidulans hxB and Drosophila melanogaster ma-l genes with nifS from Azotobacter vinelandii suggests a mechanism for the insertion of the terminal sulphur atom in the molybdopterin cofactor. Mol. Microbiol. 38: 114-125 (2000).

Amutan M, Nyyssonen E, Stubbs J, Diaz-Torres MR, Dunn-Coleman N. Identification and cloning of a mobile transposon from Aspergillus niger var. awamori. Curr. Genet. 29: 468-473 (1996).

Andersen MR, Nielsen J. Current status of systems biology in Aspergilli. Fungal Genet. Biol. 46 Suppl. 1: S180-S190 (2009).

Arst HN Jr. GABA transaminase provides an alternative route of beta-alanine synthesis in Aspergillus nidulans. Mol. Gen. Genet. 163: 23-27 (1978).

Arst HN Jr. Some genetical aspects of ornithine metabolism in Aspergillus nidulans. Mol. Gen. Genet. 151: 105-110 (1977).

Babajide OJ, Babajide OO, Daramola AO, Mabusela WT. Flavonols and an oxychromonol from Piliostigma reticulatum. Phytochemistry 69: 2245-2250 (2008).

Bai Z, Harvey LM, McNeil B. Physiological responses of chemostat cultures of Aspergillus niger (B1-D) to simulated and actual oxidative stress. Biotechnol. Bioeng. 82: 691-701 (2003).

Bai Z, Harvey LM, McNeil B. Elevated temperature effects on the oxidant/antioxidant balance in submerged batch cultures of the filamentous fungus Aspergillus niger B1-D. Biotechnol. Bioeng. 83: 772-779 (2003).

Bartnik E, Piotrowska M. Catabolite repression in Aspergillus nidulans; the role of glutamine synthetase. Acta Microbiol. Pol. 27: 303-308 (1978).

Beever RE, Laracy EP. Osmotic adjustment in the filamentous fungus Aspergillus nidulans. J. Bacteriol. 168: 1358-1365 (1986).

Bhabhra R, Askew DS. Thermotolerance and virulence of Aspergillus fumigatus: role of the fungal nucleolus. Med. Mycol. 43 Suppl. 1: S87-S93 (2005).

Bhargava S, Wenger KS, Marten MR. Pulsed feeding during fed-batch Aspergillus oryzae fermentation leads to improved oxygen mass transfer. Biotechnol. Prog. 19: 1091-1094 (2003).

Bhatnagar D, Cary JW, Ehrlich K, Yu J, Cleveland TE. Understanding the genetics of regulation of aflatoxin production and Aspergillus flavus development. Mycopathologia 162: 155-166 (2006).

Bojsen K, Yu S, Marcussen J. A group of alpha-1,4-glucan lyase genes from the fungi Morchella costata, M. vulgaris and Peziza ostracoderma. Cloning, complete sequencing and heterologous expression. Plant Mol. Biol. 40: 445-454 (1999).

Borges-Walmsley MI, Turner G, Bailey AM, Brown J, Lehmbeck J, Clausen IG. Isolation and characterisation of genes for sulphate activation and reduction in Aspergillus nidulans: implications for evolution of an allosteric control region by gene duplication. Mol. Gen. Genet. 247: 423-429 (1995).

Brito N, Avila J, Perez MD, Gonzalez C, Siverio JM. The genes YNI1 and YNR1, encoding nitrite reductase and nitrate reductase respectively in the yeast Hansenula polymorpha, are clustered and co-ordinately regulated. Biochem. J. 317: 89-95 (1996).

Brzywczy J, Sienko M, Kucharska A, Paszewski A. Sulphur amino acid synthesis in Schizosaccharomyces pombe represents a specific variant of sulphur metabolism in fungi. Yeast 19: 29-35 (2002).

Burow GB, Gardner HW, Keller NP. A peanut seed lipoxygenase responsive to Aspergillus colonization. Plant Mol. Biol. 42: 689-701 (2000).

Busch S, Hoffmann B, Valerius O, Starke K, Duvel K, Braus GH. Regulation of the Aspergillus nidulans hisB gene by histidine starvation. Curr. Genet. 38: 314-322 (2001).

Caddick MX, Peters D, Platt A. Nitrogen regulation in fungi. Antonie Van Leeuwenhoek 65: 169-177 (1994).

Calder RB, Williams RS, Ramaswamy G, Rock CO, Campbell E, Unkles SE, Kinghorn JR, Jackowski S. Cloning and characterization of a eukaryotic pantothenate kinase gene (panK) from Aspergillus nidulans. J. Biol. Chem. 274: 2014-2020 (1999).

Campbell EI, Unkles SE, Macro JA, van den Hondel C, Contreras R, Kinghorn JR. Improved transformation efficiency of Aspergillus niger using the homologous niaD gene for nitrate reductase. Curr. Genet. 16: 53-56 (1989).

Cannons AC, Shiflett SD. Transcriptional regulation of the nitrate reductase gene in Chlorella vulgaris: identification of regulatory elements controlling expression. Curr. Genet. 40: 128-135 (2001).

Canovas D, Vooijs R, Schat H, de Lorenzo V. The role of thiol species in the hypertolerance of Aspergillus sp. P37 to arsenic. J. Biol. Chem. 279: 51234-51240 (2004).

Capodicasa C, Vairo D, Zabotina O, McCartney L, Caprari C, Mattei B, Manfredini C, Aracri B, Benen J, Knox JP, De Lorenzo G, Cervone F. Targeted modification of homogalacturonan by transgenic expression of a fungal polygalacturonase alters plant growth. Plant Physiol. 135: 1294-1304 (2004).

Cardoza RE, Moralejo FJ, Gutierrez S, Casqueiro J, Fierro F, Martin JF. Characterization and nitrogen-source regulation at the transcriptional level of the gdhA gene of Aspergillus awamori encoding an NADP-dependent glutamate dehydrogenase. Curr. Genet. 34: 50-59 (1998).

Cavener DR. GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities. J. Mol. Biol. 223: 811-814 (1992).

Chang PK, Ehrlich KC, Linz JE, Bhatnagar D, Cleveland TE, Bennett JW. Characterization of the Aspergillus parasiticus niaD and niiA gene cluster. Curr. Genet. 30: 68-75 (1996).

Chevalet L, Tiraby G, Cabane B, Loison G. Transformation of Aspergillus flavus: construction of urate oxidase-deficient mutants by gene disruption. Curr. Genet. 21: 447-453 (1992).

Chou BH, Yang LM, Chang SF, Hsu FL, Lo CH, Lin WK, Wang LH, Liu PC, Lin SJ. Fungal transformation of isosteviol lactone and its biological evaluation for inhibiting the AP-1 transcription factor. Phytochemistry 70: 759-764 (2009).

Christensen T, Hynes MJ, Davis MA. Role of the regulatory gene areA of Aspergillus oryzae in nitrogen metabolism. Appl. Environ. Microbiol. 64: 3232-3237 (1998).

Clarke DL, Newbert RW, Turner G. Cloning and characterisation of the adenosyl phosphosulphate kinase gene from Aspergillus nidulans. Curr. Genet. 32: 408-412 (1997).

Cleemput G, Van Laere K, Hessing M, Van Leuven F, Torrekens S, Delcour JA. Identification and characterization of a novel arabinoxylanase from wheat flour. Plant Physiol. 115: 1619-1627 (1997).

Coca M, Bortolotti C, Rufat M, Penas G, Eritja R, Tharreau D, Del Pozo AM, Messeguer J, San Segundo B. Transgenic rice plants expressing the antifungal AFP protein from Aspergillus giganteus show enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol. Biol. 54: 245-259 (2004).

Crawford NM, Glass ADM. Molecular and physiological aspects of nitrate uptake in plants. Trends Plant Sci. 3: 389-395 (1998).

Cubero B, Gomez D, Scazzocchio C. Metabolite repression and inducer exclusion in the proline utilization gene cluster of Aspergillus nidulans. J. Bacteriol. 182: 233-235 (2000).

Cueto M, Macmillan JB, Jensen PR, Fenical W. Tropolactones A-D, four meroterpenoids from a marine-derived fungus of the genus Aspergillus. Phytochemistry 67: 1826-1831 (2006).

Dai ZY, Mao XX, Magnuson JK, Lasure LL. Identification of genes associated with morphology in Aspergillus niger by using suppression subtractive hybridization. Appl. Environ. Microbiol. 70: 2474-2485 (2004).

David H, Krogh AM, Roca C, Akesson M, Nielsen J. CreA influences the metabolic fluxes of Aspergillus nidulans during growth on glucose and xylose. Microbiology 151: 2209-2221 (2005).

David H, Ozcelik IS, Hofmann G, Nielsen J. Analysis of Aspergillus nidulans metabolism at the genome-scale. BMC Genomics 9: 163 (2008).

Daviere JM, Langin T, Daboussi MJ. Potential role of transposable elements in the rapid reorganization of the Fusarium oxysporum genome. Fungal Genet. Biol. 34: 177-192 (2001).

Davis MA, Hynes MJ. Complementation of areA- regulatory gene mutations of Aspergillus nidulans by the heterologous regulatory gene nit-2 of Neurospora crassa. Proc. Natl. Acad. Sci. U.S.A. 84: 3753-3757 (1987).

de Groot MJ, Prathumpai W, Visser J, Ruijter GJ. Metabolic control analysis of Aspergillus niger l-arabinose catabolism. Biotechnol. Prog. 21: 1610-1616 (2005).

de Jongh WA, Nielsen J. Enhanced citrate production through gene insertion in Aspergillus niger. Metab. Eng. 10: 87-96 (2008).

De S, Perkins M, Dutta SK. Nitrate reductase gene involvement in hexachlorobiphenyl dechlorination by Phanerochaete chrysosporium. J. Hazard. Mater. 135: 350-354 (2006).

De Zoysa PA, Connerton IF, Watson DC, Johnston JR. Cloning, sequencing and expression of the Schwanniomyces occidentalis NADP-dependent glutamate dehydrogenase gene. Curr. Genet. 20: 219-224 (1991).

DeGray G, Rajasekaran K, Smith F, Sanford J, Daniell H. Expression of an antimicrobial peptide via the chloroplast genome to control phytopathogenic bacteria and fungi. Plant Physiol. 127: 852-862 (2001).

Diez B, Mellado E, Rodriguez M, Bernasconi E, Barredo JL. The NADP-dependent glutamate dehydrogenase gene from Penicillium chrysogenum and the construction of expression vectors for filamentous fungi. Appl. Microbiol. Biotechnol. 52: 196-207 (1999).

Dijkema C, Kester HC, Visser J. 13C NMR studies of carbon metabolism in the hyphal fungus Aspergillus nidulans. Proc. Natl. Acad. Sci. U.S.A. 82: 14-18 (1985).

Downey R, Wiehl P. A convener role for the cnxH gene specified component in the NADPH-nitrate reductase from Aspergillus nidulans. Mol. Cell Biochem. 59: 155-163 (1984).

Downey R, Wiehl P. De novo formation of the niaD gene directed protomer in the NADPH-nitrate reductase of Aspergillus nidulans. Biochem. Biophys. Res. Commun. 108: 1517-1523 (1982).

Downey RJ, Cook JA, Brumfield AM. Monoclonal antibody probes for the niaD specified subunit in the NADPH-nitrate reductase from Aspergillus nidulans. Microbios. 52: 137-150 (1987).

Drakakaki G, Marcel S, Arcalis E, Altmann F, Gonzalez-Melendi P, Fischer R, Christou P, Stoger E. The intracellular fate of a recombinant protein is tissue dependent. Plant Physiol. 141: 578-586 (2006).

Drakakaki G, Marcel S, Glahn RP, Lund EK, Pariagh S, Fischer R, Christou P, Stoger E. Endosperm-specific co-expression of recombinant soybean ferritin and Aspergillus phytase in maize results in significant increases in the levels of bioavailable iron. Plant Mol. Biol. 59: 869-880 (2005).

Dynesen J, Nielsen J. Surface hydrophobicity of Aspergillus nidulans conidiospores and its role in pellet formation. Biotechnol. Prog. 19: 1049-1052 (2003).

Dzikowska A, Le Caer JP, Jonczyk P, Weglenski P. Purification of arginase from Aspergillus nidulans. Acta Biochim. Pol. 41: 467-471 (1994).

Ebel J, Schmidt WE, Loyal R. Phytoalexin synthesis in soybean cells: elicitor induction of phenylalanine ammonia-lyase and chalcone synthase mRNAs and correlation with phytoalexin accumulation. Arch. Biochem. Biophys. 232: 240-248 (1984).

Eckert SE, Kubler E, Hoffmann B, Braus GH. The tryptophan synthase-encoding trpB gene of Aspergillus nidulans is regulated by the cross-pathway control system. Mol. Gen. Genet. 263: 867-876 (2000).

Exley GE, Colandene JD, Garrett RH. Molecular cloning, characterization, and nucleotide sequence of nit-6, the structural gene for nitrite reductase in Neurospora crassa. J. Bacteriol. 175: 2379-2392 (1993).

Flipphi M, Kocialkowska J, Felenbok B. Relationships between the ethanol utilization (alc) pathway and unrelated catabolic pathways in Aspergillus nidulans. Eur. J. Biochem. 270: 3555-3564 (2003).

Friedberg MA, Hinsdale ME, Shihabi ZK. Analysis of nitrate in biological fluids by capillary electrophoresis. J. Chromatogr. A. 781: 491-496 (1997).

Frost JW, Draths KM. Biocatalytic syntheses of aromatics from D-glucose: renewable microbial sources of aromatic-compounds. Annu. Rev. Microbiol. 49: 557-579 (1995).

Gao-Rubinelli F, Marzluf GA. Identification and characterization of a nitrate transporter gene in Neurospora crassa. Biochem. Genet. 42: 21-34 (2004).

Garde J, Kinghorn JR, Tomsett AB. Site-directed mutagenesis of nitrate reductase from Aspergillus nidulans. Identification of some essential and some nonessential amino acids among conserved residues. J. Biol. Chem. 270: 6644-6650 (1995).

Garoosi GA, Salter MG, Caddick MX, Tomsett AB. Characterization of the ethanol-inducible alc gene expression system in tomato. J. Exp. Bot. 56: 1635-1642 (2005).

George TS, Richardson AE, Hadobas PA, Simpson RJ. Characterization of transgenic Trifolium subterraneum L. which expresses phyA and releases extracellular phytase: growth and P nutrition in laboratory media and soil. Plant Cell Environ. 27: 1351-1361 (2004).

Gilliam MB, Sherman MP, Griscavage JM, Ignarro LJ. A spectrophotometric assay for nitrate using NADPH oxidation by Aspergillus nitrate reductase. Anal. Biochem. 212: 359-365 (1993).

Glass AD, Britto DT, Kaiser BN, Kinghorn JR, Kronzucker HJ, Kumar A, Okamoto M, Rawat S, Siddiqi MY, Unkles SE, Vidmar JJ. The regulation of nitrate and ammonium transport systems in plants. J. Exp. Bot. 53: 855-864 (2002).

Glayzer DC, Roberts IN, Archer DB, Oliver RP. The isolation of Ant1, a transposable element from Aspergillus niger. Mol. Gen. Genet. 249: 432-438 (1995).

Gouka RJ, van Hartingsveldt W, Bovenberg RA, van den Hondel CA, van Gorcom RF. Cloning of the nitrate-nitrite reductase gene cluster of Penicillium chrysogenum and use of the niaD gene as a homologous selection marker. J. Biotechnol. 20: 189-199 (1991).

Grotz N, Guerinot ML. Limiting nutrients: an old problem with new solutions? Curr. Opin. Plant Biol. 5: 158-163 (2002).

Guan Y, Ramalingam S, Nagegowda D, Taylor PW, Chye ML. Brassica juncea chitinase BjCHI1 inhibits growth of fungal phytopathogens and agglutinates Gram-negative bacteria. J. Exp. Bot. 59: 3475-3484 (2008).

Guescini M, Pierleoni R, Palma F, Zeppa S, Vallorani L, Potenza L, Sacconi C, Giomaro G, Stocchi V. Characterization of the Tuber borchii nitrate reductase gene and its role in ectomycorrhizae. Mol. Genet. Genomics 269: 807-816 (2003).

Guo BZ, Xu G, Cao YG, Holbrook CC, Lynch RE. Identification and characterization of phospholipase D and its association with drought susceptibilities in peanut (Arachis hypogaea). Planta 223: 512-520 (2006).

Guranowski A, Paszewski A. Metabolism of 5'-methylthioadenosine in Aspergillus nidulans. An alternative pathway for methionine synthesis via utilization of the nucleoside methylthio group. Biochim. Biophys. Acta 717: 289-294 (1982).

Gurr SJ, Hawkins AR, Drainas C, Kinghorn JR. Isolation and identification of the Aspergillus nidulans gdhA gene encoding NADP-linked glutamate dehydrogenase. Curr. Genet. 10: 761-766 (1986).

Haas H, Bauer B, Redl B, Stoffler G, Marzluf GA. Molecular cloning and analysis of nre, the major nitrogen regulatory gene of Penicillium chrysogenum. Curr. Genet. 27: 150-158 (1995).

Haas H, Marx F, Graessle S, Stoffler G. Sequence analysis and expression of the Penicillium chrysogenum nitrate reductase encoding gene (niaD). Biochim. Biophys. Acta 1309: 81-84 (1996).

Hadfield KA, Rose JK, Yaver DS, Berka RM, Bennett AB. Polygalacturonase gene expression in ripe melon fruit supports a role for polygalacturonase in ripening-associated pectin disassembly. Plant Physiol. 117: 363-373 (1998).

Hall N, Tomsett AB. Structure-function analysis of NADPH:nitrate reductase from Aspergillus nidulans: analysis of altered pyridine nucleotide specificity in vivo. Microbiology 146: 1399-1406 (2000).

Haridy MS, Ahmed AA, Doe M. Microbiological transformation of two labdane diterpenes, the main constituents of Madia species, by two fungi. Phytochemistry 67: 1455-1459 (2006).

Hartmann M, Heinrich G, Braus GH. Regulative fine-tuning of the two novel DAHP isoenzymes aroFp and aroGp of the filamentous fungus Aspergillus nidulans. Arch. Microbiol. 175: 112-121 (2001).

Hawker KL, Montague P, Kinghorn JR. Nitrate reductase and nitrite reductase transcript levels in various mutants of Aspergillus nidulans: confirmation of autogenous regulation. Mol. Gen. Genet. 231: 485-488 (1992).

Hawker KL, Montague P, Marzluf GA, Kinghorn JR. Heterologous expression and regulation of the Neurospora crassa nit-4 pathway-specific regulatory gene for nitrate assimilation in Aspergillus nidulans. Gene 100: 237-240 (1991).

Hawkins AR, Gurr SJ, Montague P, Kinghorn JR. Nucleotide sequence and regulation of expression of the Aspergillus nidulans gdhA gene encoding NADP dependent glutamate dehydrogenase. Mol. Gen. Genet. 218: 105-111 (1989).

Hawkins AR, Lamb HK, Radford A, Moore JD. Evolution of transcription-regulating proteins by enzyme recruitment: molecular models for nitrogen metabolite repression and ethanol utilisation in eukaryotes. Gene 146: 145-158 (1994).

Hawkins AR, Moore JD, Adeokun AM. Characterization of the 3-dehydroquinase domain of the pentafunctional AROM protein, and the quinate dehydrogenase from Aspergillus nidulans, and the overproduction of the type II 3-dehydroquinase from Neurospora crassa. Biochem. J. 296: 451-457 (1993).

Heck IS, Schrag JD, Sloan J, Millar LJ, Kanan G, Kinghorn JR, Unkles SE. Mutational analysis of the gephyrin-related molybdenum cofactor biosynthetic gene cnxe from the lower eukaryote Aspergillus nidulans. Genetics 161: 623-632 (2002).

Hesse SJ, Ruijter GJ, Dijkema C, Visser J. Intracellular pH homeostasis in the filamentous fungus Aspergillus niger. Eur. J. Biochem. 269: 3485-3494 (2002).

Hofmann G, Diano A, Nielsen J. Recombinant bacterial hemoglobin alters metabolism of Aspergillus niger. Metab. Eng. 11: 8-12 (2009).

Hutchings H, Stahmann KP, Roels S, Espeso EA, Timberlake WE, Arst HN, Tilburn J. the multiply-regulated GABA gene encoding the GABA permease of Aspergillus nidulans: a score of exons. Mol. Microbiol. 32: 557-568 (1999).

Jin Y, Weining S, Nevo E. A MAPK gene from Dead Sea fungus confers stress tolerance to lithium salt and freezing-thawing: prospects for saline agriculture. Proc. Natl. Acad. Sci. U.S.A. 102: 18992-18997 (2005).

Johnstone IL, McCabe PC, Greaves P, Gurr SJ, Cole GE, Brow MA, Unkles SE, Clutterbuck AJ, Kinghorn JR, Innis MA. Isolation and characterisation of the crnA-niiA-niaD gene cluster for nitrate assimilation in Aspergillus nidulans. Gene 90: 181-192 (1990).

Juvvadi PR, Seshime Y, Kitamoto K. Genomics reveals traces of fungal phenylpropanoid-flavonoid metabolic pathway in the filamentous fungus Aspergillus oryzae. J. Microbiol. 43 :475-486 (2005).

Kacprzak MM, Lewandowska I, Matthews RG, Paszewski A. Transcriptional regulation of methionine synthase by hornocysteine and choline in Aspergillus nidulans. Biochem. J. 376: 517-524 (2003).

Karniol B, Malec P, Chamovitz DA. Arabidopsis FUSCA5 encodes a novel phosphoprotein that is a component of the COP9 complex. Plant Cell 11: 839-848 (1999).

Kim Y, Nandakumar MP, Marten MR. The state of proteome profiling in the fungal genus Aspergillus. Brief. Funct. Genomic. Proteomic. 7: 87-94 (2008).

Kinghorn JR. Genetic, biochemical, and structural organization of the Aspergillus nidulans crnA-niiA-niaD gene cluster. In "Molecular and Genetic Aspects of Nitrate Assimilation" (JL Wray, JR Kinghorn eds) Oxford Science Publications, Oxford, pp. 69-87 (1989).

Kinghorn JR, Pateman JA. Mutants of Aspergillus nidulans lacking nicotinamide adenine dinucleotide-specific glutamate dehydrogenase. J. Bacteriol. 125: 42-47 (1976).

Kinghorn JR, Pateman JA. The structural gene for NADP L-glutamate dehydrogenase in Aspergillus nidulans. J. Gen. Microbiol. 86: 294-300 (1975).

Kittell J, Borup B, Voladari R, Zahn K. Parallel capillary electrophoresis for the quantitative screening of fermentation broths containing natural products. Metab. Eng. 7: 53-58 (2005).

Krappmann S, Helmstaedt K, Gerstberger T, Eckert S, Hoffmann B, Hoppert M, Schnappauf G, Braus GH. The aroC gene of Aspergillus nidulans codes for a monofunctional, allosterically regulated chorismate mutase. J. Biol. Chem. 274: 22275-22282 (1999).

Kremer A, Li SM. Potential of a 7-dimethylallyltryptophan synthase as a tool for production of prenylated indole derivatives. Appl. Microbiol. Biotechnol. 79: 951-961 (2008).

Kremer A, Westrich L, Li SM. A 7-dimethylallyltryptophan synthase from Aspergillus fumigatus: overproduction, purification and biochemical characterization. Microbiology 153: 3409-3416 (2007).

Kudla B, Caddick MX, Langdon T, Martinez-Rossi NM, Bennett CF, Sibley S, Davies RW, Arst HN Jr. The regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans. Mutations affecting specificity of gene activation alter a loop residue of a putative zinc finger. EMBO J. 9: 1355-1364 (1990).

Kumar S, Punekar NS. The metabolism of 4-aminobutyrate (GABA) in fungi. Mycol. Res. 101: 403-409 (1997).

Kumar S, Punekar NS. Inhibition of succinic semialdehyde dehydrogenase by N-formylglycine. J. Enzyme Inhib. 13: 369-376 (1998).

Kumar S, Punekar NS, SatyaNarayan V, Venkatesh KV. Metabolic fate of glutamate and evaluation of flux through the 4-aminobutyrate (GABA) shunt in Aspergillus niger. Biotechnol. Bioeng. 67: 575-584 (2000).

Kurtov D, Kinghorn JR, Unkles SE. The Aspergillus nidulans panB gene encodes ketopantoate hydroxymethyltransferase, required for biosynthesis of pantothenate and Coenzyme A. Mol. Gen. Genet. 262: 115-120 (1999).

Kusnan MB, Berger MG, Fock HP. The involvement of glutamine synthetase/glutamate synthase in ammonia assimilation by Aspergillus nidulans. J. Gen. Microbiol. 133: 1235-1242 (1987).

Kusnan MB, Klug K, Fock HP. Ammonia assimilation by Aspergillus nidulans: [15N]ammonia study. J. Gen. Microbiol. 135: 729-738 (1989).

Lamb HK, Dodds AL, Swatman DR, Cairns E, Hawkins AR. Deletion of the N-terminal region of the AREA protein is correlated with a derepressed phenotype with respect to nitrogen metabolite repression. J. Bacteriol. 179: 6649-6656 (1997).

Lamb HK, van den Hombergh JP, Newton GH, Moore JD, Roberts CF, Hawkins AR. Differential flux through the quinate and shikimate pathways. Implications for the channelling hypothesis. Biochem. J. 284: 181-187 (1992).

Lee BN, Adams TH. The Aspergillus nidulans fluG gene is required for production of an extracellular developmental signal and is related to prokaryotic glutamine synthetase I. Genes Dev. 8: 641-651 (1994).

Lenouvel F, Fraissinet-Tachet L, van de Vondervoort PJ, Visser J. Isolation of UV-induced mutations in the areA nitrogen regulatory gene of Aspergillus niger, and construction of a disruption mutant. Mol. Genet. Genomics 266: 42-47 (2001).

Lewandowska I, Balinska M, Natorff R, Paszewski A. Regulation of folate-dependent enzyme levels in Aspergillus nidulans: studies with regulatory mutants. Biochim. Biophys. Acta 1290: 89-94 (1996).

Leydecker MT, Moureaux T, Kraepiel Y, Schnorr K, Caboche M. Molybdenum cofactor mutants, specifically impaired in xanthine dehydrogenase activity and abscisic acid biosynthesis, simultaneously overexpress nitrate reductase. Plant Physiol. 107: 1427-1431 (1995).

Li G, Yang Y, Jiao R. Nitrite reductase gene cloning of Amycolatopsis mediterranei U-32. Chin. J. Biotechnol. 10: 145-151 (1994).

Li J, Hegeman CE, Hanlon RW, Lacy GH, Denbow MD, Grabau EA. Secretion of active recombinant phytase from soybean cell-suspension cultures. Plant Physiol. 114: 1103-1111 (1997).

Li Q, Abrashev R, Harvey LM, McNeil B. Oxidative stress-associated impairment of glucose and ammonia metabolism in the filamentous fungus, Aspergillus niger B1-D. Mycol. Res. 112: 1049-1055 (2008).

Li RZ, Jia XY, Mao X. Ethanol-inducible gene expression system and its applications in plant functional genomics. Plant Sci. 169: 463-469 (2005).

Li SM. Evolution of aromatic prenyltransferases in the biosynthesis of indole derivatives. Phytochemistry Apr 25 [Epub ahead of print] (2009).

Lopes-Lutz D, Alviano DS, Alviano CS, Kolodziejczyk PP. Screening of chemical composition, antimicrobial and antioxidant activities of Artemisia essential oils. Phytochemistry 69: 1732-1738 (2008).

Lung SC, Chan WL, Yip W, Wang LJ, Yeung EC, Lim BL. Secretion of beta-propeller phytase from tobacco and Arabidopsis roots enhances phosphorus utilization. Plant Sci. 169: 341-349 (2005).

Luo M, Liang XQ, Dang P, Holbrook CC, Bausher MG, Lee RD, Guo BZ. Microarray-based screening of differentially expressed genes in peanut in response to Aspergillus parasiticus infection and drought stress. Plant Sci. 169: 695-703 (2005).

Macheda ML, Hynes MJ, Davis MA. The Aspergillus nidulans gltA gene encoding glutamate synthase is required for ammonium assimilation in the absence of NADP-glutamate dehydrogenase. Curr. Genet. 34: 467-471 (1999).

Malardier L, Daboussi MJ, Julien J, Roussel F, Scazzocchio C, Brygoo Y. Cloning of the nitrate reductase gene (niaD) of Aspergillus nidulans and its use for transformation of Fusarium oxysporum. Gene 78: 147-156 (1989).

Margelis S, D'Souza C, Small AJ, Hynes MJ, Adams TH, Davis MA. Role of glutamine synthetase in nitrogen metabolite repression in Aspergillus nidulans. J. Bacteriol. 183: 5826-5833 (2001).

Marzluf GA. Molecular genetics of sulfur assimilation in filamentous fungi and yeast. Annu. Rev. Microbiol. 51: 73-96 (1997).

McIntyre M, Muller C, Dynesen J, Nielsen J. Metabolic engineering of the morphology of Aspergillus. Adv. Biochem. Eng. Biotechnol. 73: 103-128 (2001).

Meijer S, Otero J, Olivares R, Andersen MR, Olsson L, Nielsen J. Overexpression of isocitrate lyase-glyoxylate bypass influence on metabolism in Aspergillus niger. Metab. Eng. 11: 107-116 (2009).

Melo VMM, Vasconcelos IM, Gomes VM, Da Cunha M, Soares AA, Oliveira JTA. A cotyledonary agglutinin from Luetzelburgia auriculata inhibits the fungal growth of Colletotrichum lindemuthianum, Fusarium solani and Aspergillus niger and impairs glucose-stimulated acidification of the incubation medium by Saccharomyces cerevisiae. Plant Sci. 169: 629-639 (2005).

Mendel RR, Schwarz G. Biosynthesis and molecular biology of the molybdenum cofactor (Moco). Met. Ions Biol. Syst. 39: 317-368 (2002).

Mihlan M, Homann V, Liu TW, Tudzynski B. AREA directly mediates nitrogen regulation of gibberellin biosynthesis in Gibberella fujikuroi, but its activity is not affected by NMR. Mol. Microbiol. 47: 975-991 (2003).

Minagawa N, Yoshimoto A. Purification and characterization of the assimilatory NADPH-nitrate reductase of Aspergillus nidulans. J. Biochem. (Tokyo) 91: 761-774 (1982).

Minehart PL, Magasanik B. Sequence and expression of GLN3, a positive nitrogen regulatory gene of Saccharomyces cerevisiae encoding a protein with a putative zinc finger DNA-binding domain. Mol. Cell Biol. 11: 6216-6228 (1991).

Mita G, Fasano P, De Domenico S, Perrone G, Epifani F, Iannacone R, Casey R, Santino A. 9-Lipoxygenase metabolism is involved in the almond/Aspergillus carbonarius interaction. J. Exp. Bot. 58: 1803-1811 (2007).

Moore JD, Hawkins AR. Overproduction of, and interaction within, bifunctional domains from the amino- and carboxy-termini of the pentafunctional AROM protein of Aspergillus nidulans. Mol. Gen. Genet. 240: 92-102 (1993).

Morozov IY, Galbis-Martinez M, Jones MG, Caddick MX. Characterization of nitrogen metabolite signalling in Aspergillus via the regulated degradation of areA mRNA. Mol. Microbiol. 42: 269-277 (2001).

Muller C, McIntyre M, Hansen K, Nielsen J. Metabolic engineering of the morphology of Aspergillus oryzae by altering chitin synthesis. Appl. Environ. Microbiol. 68: 1827-1836 (2002).

Muro-Pastor MI, Strauss J, Ramon A, Scazzocchio C. A paradoxical mutant GATA factor. Eukaryot. Cell 3: 393-405 (2004).

Mutter M, Beldman G, Pitson SM, Schols HA, Voragen AG. Rhamnogalacturonan alpha-d-galactopyranosyluronohydrolase. An enzyme that specifically removes the terminal nonreducing galacturonosyl residue in rhamnogalacturonan regions of pectin. Plant Physiol. 117: 153-163 (1998).

Mutter M, Beldman G, Schols HA, Voragen AG. Rhamnogalacturonan alpha-L-rhamnopyranohydrolase. A novel enzyme specific for the terminal nonreducing rhamnosyl unit in rhamnogalacturonan regions of pectin. Plant Physiol. 106: 241-250 (1994).

Mutter M, Colquhoun IJ, Schols HA, Beldman G, Voragen AG. Rhamnogalacturonase B from Aspergillus aculeatus is a rhamnogalacturonan alpha-L-rhamnopyranosyl-(1-->4)-alpha-D-galactopyranosyluronide lyase. Plant Physiol. 110: 73-77 (1996).

Nadolska-Lutyk J, Balinska M, Paszewski A. Interrelated regulation of sulphur-containing amino-acid biosynthetic enzymes and folate-metabolizing enzymes in Aspergillus nidulans. Eur. J. Biochem. 181: 231-235 (1989).

Nardini A, Gasco A, Cervone F, Salleo S. Reduced content of homogalacturonan does not alter the ion-mediated increase in xylem hydraulic conductivity in tobacco. Plant Physiol. 143: 1975-1981 (2007).

Narendja F, Goller SP, Wolschek M, Strauss J. Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans. Mol. Microbiol. 44: 573-583 (2002).

Navarro FJ, Perdomo G, Tejera P, Medina B, Machin H, Guillen RM, Lancha A, Siverio JM. The role of nitrate reductase in the regulation of the nitrate assimilation pathway in the yeast Hansenula polymorpha. FEMS Yeast Res. 4: 149-155 (2003).

Navarro MT, Mariscal V, Macias MI, Fernandez E, Galvan A. Chlamydomonas reinhardtii strains expressing nitrate reductase under control of the cabII-1 promoter: isolation of chlorate resistant mutants and identification of new loci for nitrate assimilation. Photosynth. Res. 83: 151-161 (2005).

Niegemann E, Schulz A, Bartsch K. Molecular organization of the Escherichia coli gab cluster: nucleotide sequence of the structural genes gabD and gabP and expression of the GABA permease gene. Arch. Microbiol. 160: 454-460 (1993).

Noor S, Punekar NS. Allosteric NADP-glutamate dehydrogenase from aspergilli: purification, characterization and implications for metabolic regulation at the carbon-nitrogen interface. Microbiology 151: 1409-1419 (2005).

Noventa-Jordao MA, Couto RM, Goldman MHS, Aguirre J, Iyer S, Caplan A, Terenzi HF, Goldman GH. Catalase activity is necessary for heat-shock recovery in Aspergillus nidulans germlings. Microbiology 145: 3229-3234 (1999).

Oberegger H, Eisendle M, Schrettl M, Graessle S, Haas H. 4'-Phosphopantetheinyl transferase-encoding npgA is essential for siderophore biosynthesis in Aspergillus nidulans. Curr. Genet. 44: 211-215 (2003).

Ogasawara H, Obata H, Hata Y, Takahashi S, Gomi K. Crawler, a novel Tc1/mariner-type transposable element in Aspergillus oryzae transposes under stress conditions. Fungal Genet. Biol. 46: 441-449 (2009).

Orejas M, MacCabe AP, Perez Gonzalez JA, Kumar S, Ramon D. Carbon catabolite repression of the Aspergillus nidulans xlnA gene. Mol. Microbiol. 31: 177-184 (1999).

Orsel M, Filleur S, Fraisier V, Daniel-Vedele F. Nitrate transport in plants: which gene and which control? J. Exp. Bot. 53: 825-833 (2002).

Panagiotou G, Andersen MR, Grotkjaer T, Regueira TB, Nielsen J, Olsson L. Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools. Appl. Environ. Microbiol. 75: 2212-2220 (2009).

Panagiotou G, Grotkjaer T, Hofmann G, Bapat PM, Olsson L. Overexpression of a novel endogenous NADH kinase in Aspergillus nidulans enhances growth. Metab. Eng. 11: 31-39 (2009).

Parvatkar RR, D'Souza C, Tripathi A, Naik CG. Aspernolides A and B, butenolides from a marine-derived fungus Aspergillus terreus. Phytochemistry 70: 128-132 (2009).

Paszewski A, Grabski J. Enzymatic lesions in methionine mutants of Aspergillus nidulans: role and regulation of an alternative pathway for cysteine and methionine synthesis. J. Bacteriol. 124: 893-904 (1975).

Paszewski A, Prazmo W, Nadolska J, Regulski M. Mutations affecting the sulphur assimilation pathway in Aspergillus nidulans: their effect on sulphur amino acid metabolism. J. Gen. Microbiol. 130: 1113-1121 (1984).

Payne GA, Nierman WC, Wortman JR, Pritchard BL, Brown D, Dean RA, Bhatnagar D, Cleveland TE, Machida M, Yu J. Whole genome comparison of Aspergillus flavus and A. oryzae. Med. Mycol. 44: S9-S11 (2006).

Pedersen H, Carlsen M, Nielsen J. Identification of enzymes and quantification of metabolic fluxes in the wild type and in a recombinant Aspergillus oryzae strain. Appl. Environ. Microbiol. 65: 11-19 (1999).

Pedersen H, Christensen B, Hjort C, Nielsen J. Construction and characterization of an oxalic acid nonproducing strain of Aspergillus niger. Metab. Eng. 2: 34-41 (2000).

Perez MD, Gonzalez C, Avila J, Brito N, Siverio JM. The YNT1 gene encoding the nitrate transporter in the yeast Hansenula polymorpha is clustered with genes YNI1 and YNR1 encoding nitrite reductase and nitrate reductase, and its disruption causes inability to grow in nitrate. Biochem. J. 321: 397-403 (1997).

Pieterse CM, van't Klooster J, van den Berg-Velthuis GC, Govers F. NiaA, the structural nitrate reductase gene of Phytophthora infestans: isolation, characterization and expression analysis in Aspergillus nidulans. Curr. Genet. 27: 359-366 (1995).

Pilsyk S, Natorff R, Sienko M, Paszewski A. Sulfate transport in Aspergillus nidulans: a novel gene encoding alternative sulfate transporter. Fungal Genet. Biol. 44: 715-725 (2007).

Pines O, Shemesh S, Battat E, Goldberg I. Overexpression of cytosolic malate dehydrogenase (MDH2) causes overproduction of specific organic acids in Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 48: 248-255 (1997).

Platt A, Ravagnani A, Arst H Jr, Kirk D, Langdon T, Caddick MX. Mutational analysis of the C-terminal region of AREA, the transcription factor mediating nitrogen metabolite repression in Aspergillus nidulans. Mol. Gen. Genet. 250: 106-114 (1996).

Polley SD, Caddick MX. Molecular characterisation of meaB, a novel gene affecting nitrogen metabolite repression in Aspergillus nidulans. FEBS Lett. 388: 200-205 (1996).

Portillo-Ruiz MC, Viramontes-Ramos S, Munoz-Castellanos LN, Gastelum-Franco MG, Nevarez-Moorillon GV. Antifungal activity of Mexican oregano (Lippia berlandieri Shauer). J. Food Prot. 68: 2713-2717 (2005).

Prasad BC, Gururaj HB, Kumar V, Giridhar P, Ravishankar GA. Valine pathway is more crucial than phenyl propanoid pathway in regulating capsaicin biosynthesis in Capsicum frutescens Mill. J. Agric. Food Chem. 54: 6660-6666 (2006).

Prathumpai W, Gabelgaard JB, Wanchanthuek P, Van De Vondervoort PJ, De Groot MJ, McIntyre M, Nielsen J. Metabolic control analysis of xylose catabolism in Aspergillus. Biotechnol. Prog. 19: 1136-1141 (2003).

Punt PJ, Strauss J, Smit R, Kinghorn JR, van den Hondel CA, Scazzocchio C. The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally. Mol. Cell Biol. 15: 5688-5699 (1995).

Qin Q, Bergmann CW, Rose JK, Saladie M, Kolli VS, Albersheim P, Darvill AG, York WS. Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase. Plant J. 34: 327-338 (2003).

Quesada A, Galvan A, Fernandez E. Identification of nitrate transporter genes in Chlamydomonas reinhardtii. Plant J. 5: 407-419 (1994).

Quesada A, Krapp A, Trueman LJ, Daniel-Vedele F, Fernandez E, Forde BG, Caboche M. PCR-identification of a Nicotiana plumbaginifolia cDNA homologous to the high-affinity nitrate transporters of the crnA family. Plant Mol. Biol. 34: 265-274 (1997).

R Poulsen B, Nohr J, Douthwaite S, Hansen LV, Iversen JJ, Visser J, Ruijter GJ. Increased NADPH concentration obtained by metabolic engineering of the pentose phosphate pathway in Aspergillus niger. FEBS J. 272: 1313-1325 (2005).

Ralet MC, Crepeau MJ, Bonnin E. Evidence for a blockwise distribution of acetyl groups onto homogalacturonans from a commercial sugar beet (Beta vulgaris) pectin. Phytochemistry 69: 1903-1909 (2008).

Rexer HU, Schaberle T, Wohlleben W, Engels A. Investigation of the functional properties and regulation of three glutamine synthetase-like genes in Streptomyces coelicolor A3(2). Arch. Microbiol. 186: 447-458 (2006).

Richardson AE, Hadobas PA, Hayes JE. Extracellular secretion of Aspergillus phytase from Arabidopsis roots enables plants to obtain phosphorus from phytate. Plant J. 25: 641-649 (2001).

Rigbers O, Li SM. Ergot alkaloid biosynthesis in Aspergillus fumigatus: overproduction and biochemical characterisation of a 4-dimethylallyltryptophan N-methyltransferase. J. Biol. Chem. 283: 26859-26868 (2008).

Rock CO, Calder RB, Karim MA, Jackowski S. Pantothenate kinase regulation of the intracellular concentration of coenzyme A. J. Biol. Chem. 275: 1377-1383 (2000).

Rosa AL, Folco HD, Mautino MR. In vivo levels of S-adenosylmethionine modulate C:G to T:A mutations associated with repeat-induced point mutation in Neurospora crassa. Mutat. Res. 548: 85-95 (2004).

Ruiz-Diez B. Strategies for the transformation of filamentous fungi. J. Appl. Microbiol. 92: 189-195 (2002).

Sabulal B, Dan M, J AJ, Kurup R, Pradeep NS, Valsamma RK, George V. Caryophyllene-rich rhizome oil of Zingiber nimmonii from South India: chemical characterization and antimicrobial activity. Phytochemistry 67: 2469-2473 (2006).

Sakamoto Y, Watanabe H, Nagai M, Nakade K, Takahashi M, Sato T. Lentinula edodes tlg1 encodes a thaumatin-like protein that is involved in lentinan degradation and fruiting body senescence. Plant Physiol. 141: 793-801 (2006).

Sandhu SS, Kinghorn JR, Rajak RC, Unkles SE. Transformation system of Beauveria bassiana and Metarhizium anisopliae using nitrate reductase gene of Aspergillus nidulans. Indian J. Exp. Biol. 39: 650-653 (2001).

Santerre Henriksen AL, Even S, Muller C, Punt PJ, van den Hondel CA, Nielsen J. Study of the glucoamylase promoter in Aspergillus niger using green fluorescent protein. Microbiology 145: 729-734 (1999).

Santos M, Rebordinos L, Gutierrez S, Cardoza RE, Martin JF, Cantoral JM. Characterization of the gdhA gene from the phytopathogen Botrytis cinerea. Fungal Genet. Biol. 34: 193-206 (2001).

Scazzochio C, Arnst HN Jr. Regulation of nitrate assimilation in Aspergillus nidulans. In "Molecular and Genetic Aspects of Nitrate Assimilation" (JL Wray, JR Kinghorn eds) Oxford Science Publications, Oxford, pp. 299-313 (1989).

Schaap PJ, Muller Y, Baars JJ, Op den Camp HJ, Sonnenberg AS, van Griensven LJ, Visser J. Nucleotide sequence and expression of the gene encoding NADP+- dependent glutamate dehydrogenase (gdhA) from Agaricus bisporus. Mol. Gen. Genet. 250: 339-347 (1996).

Schardl CL, Panaccione DG, Tudzynski P. Ergot alkaloids - biology and molecular biology. Alkaloids Chem. Biol. 63: 45-86 (2006).

Schmidt K, Marx A, de Graaf AA, Wiechert W, Sahm H, Nielsen J, Villadsen J. 13C tracer experiments and metabolite balancing for metabolic flux analysis: comparing two approaches. Biotechnol. Bioeng. 58: 254-257 (1998).

Schutyser MA, de Pagter P, Weber FJ, Briels WJ, Boom RM, Rinzema A. Substrate aggregation due to aerial hyphae during discontinuously mixed solid-state fermentation with Aspergillus oryzae: experiments and modeling. Biotechnol. Bioeng. 83: 503-513 (2003).

Seshime Y, Juvvadi PR, Fujii I, Kitamoto K. Genomic evidences for the existence of a phenylpropanoid metabolic pathway in Aspergillus oryzae. Biochem. Biophys. Res. Commun. 337: 747-751 (2005).

Sienko M, Natorff R, Owczarek S, Olewiecki I, Paszewski A. Aspergillus nidulans genes encoding reverse transsulfuration enzymes belong to homocysteine regulon. Curr. Genet. Aug 15 [Epub ahead of print] (2009).

Sienko M, Paszewski A. The metG gene of Aspergillus nidulans encoding cystathionine b-lyase: cloning and analysis. Curr. Genet. 35: 638-646 (1999).

Smedsgaard J, Nielsen J. Metabolite profiling of fungi and yeast: from phenotype to metabolome by MS and informatics. J. Exp. Bot. 56: 273-286 (2005).

Smit MS. Fungal epoxide hydrolases: new landmarks in sequence-activity space. Trends Biotechnol. 22: 123-129 (2004).

Solomon PS, Oliver RP. Evidence that gamma-aminobutyric acid is a major nitrogen source during Cladosporium fulvum infection of tomato. Planta 214: 414-420 (2002).

Soriano R, Bautista LF, Martinez M, Aracil J. Use of a diffusion model for mono- and bicomponent anion-exchange of two isoenzymes of glucoamylase from Aspergillus niger in a fixed bed. Biotechnol. Prog. 19: 1283-1291 (2003).

Stevens L, Duncan D, Robertson P. Purification and characterisation of NAD-glutamate dehydrogenase from Aspergillus nidulans. FEMS Microbiol. Lett. 48: 173-177 (1989).

Straffon MJ, Hynes MJ, Davis MA. Characterization of the ugatA gene of Ustilago maydis, isolated by homology to the gatA gene of Aspergillus nidulans. Curr. Genet. 29: 360-369 (1996).

Swart K, Debets AJM, Kobus G, Bos CJ. Arginine and proline genes of Aspergillus niger. Antonie van Leeuwenhoek 61: 259-264 (1992).

Takasaki K, Shoun H, Nakamura A, Hoshino T, Takaya N. Unusual transcription regulation of the niaD gene under anaerobic conditions supporting fungal ammonia fermentation. Biosci. Biotechnol. Biochem. 68: 978-980 (2004).

Takaya N. Response to hypoxia, reduction of electron acceptors, and subsequent survival by filamentous fungi. Biosci. Biotechnol. Biochem. 73: 1-8 (2009).

Thykaer J, Andersen MR, Baker SE. Essential pathway identification: from in silico analysis to potential antifungal targets in Aspergillus fumigatus. Med. Mycol. 47 Suppl. 1: S80-S87 (2009).

Torres R, Mateo C, Fernandez-Lorente G, Ortiz C, Fuentes M, Palomo JM, Guisan JM, Fernandez-Lafuente R. A novel heterofunctional epoxy-amino sepabeads for a new enzyme immobilization protocol: immobilization-stabilization of beta-galactosidase from Aspergillus oryzae. Biotechnol. Prog. 19: 1056-1060 (2003).

Unkles SE, Campbell EI, Punt PJ, Hawker KL, Contreras R, Hawkins AR, Van den Hondel CA, Kinghorn JR. The Aspergillus niger niaD gene encoding nitrate reductase: upstream nucleotide and amino acid sequence comparisons. Gene 111: 149-155 (1992).

Unkles SE, Hawker KL, Grieve C, Campbell EI, Montague P, Kinghorn JR. crnA encodes a nitrate transporter in Aspergillus nidulans. Proc. Natl. Acad. Sci. U.S.A. 88: 204-208 (1991).

Unkles SE, Heck IS, Appleyard MV, Kinghorn JR. Eukaryotic molybdopterin synthase. Biochemical and molecular studies of Aspergillus nidulans cnxG and cnxH mutants. J. Biol. Chem. 274: 19286-19293 (1999).

Unkles SE, Smith J, Kanan GJ, Millar LJ, Heck IS, Boxer DH, Kinghorn JR. The Aspergillus nidulans cnxABC locus is a single gene encoding two catalytic domains required for synthesis of precursor Z, an intermediate in molybdenum cofactor biosynthesis. J. Biol. Chem. 272: 28381-28390 (1997).

Valerius O, Draht O, Kubler E, Adler K, Hoffmann B, Braus GH. Regulation of hisHF transcription of Aspergillus nidulans by adenine and amino acid limitation. Fungal Genet. Biol. 32: 21-31 (2001).

Vallorani L, Polidori E, Sacconi C, Agostini D, Pierleoni R, Piccoli G, Zeppa S, Stocchi V. Biochemical and molecular characterization of NADP glutamate dehydrogenase from the ectomycorrhizal fungus Tuber borchii. New Phytol. 154: 779-790 (2002).

Van Den Ende W, Michiels A, Van Wonterghem D, Vergauwen R, Van Laere A. Cloning, developmental, and tissue-specific expression of sucrose:sucrose 1-fructosyl transferase from Taraxacum officinale. Fructan localization in roots. Plant Physiol. 123: 71-80 (2000).

van den Hombergh JP, Moore JD, Charles IG, Hawkins AR. Overproduction in Escherichia coli of the dehydroquinate synthase domain of the Aspergillus nidulans pentafunctional AROM protein. Biochem. J. 284: 861-867 (1992).

Verwoerd TC, van Paridon PA, van Ooyen AJ, van Lent JW, Hoekema A, Pen J. Stable accumulation of Aspergillus niger phytase in transgenic tobacco leaves. Plant Physiol. 109: 1199-1205 (1995).

Voit EO, Del Signore M. Assessment of effects of experimental imprecision on optimized biochemical systems. Biotechnol. Bioeng. 74: 443-448 (2001).

von Wiren N, Gazzarrini S, Frommer WB. Regulation of mineral nitrogen uptake in plants. Plant & Soil 196: 191-199 (1997).

Vongsangnak W, Olsen P, Hansen K, Krogsgaard S, Nielsen J. Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae. BMC Genomics 9: 245 (2008).

Voronovsky AY, Rohulya OV, Abbas CA, Sibirny AA. Development of strains of the thermotolerant yeast Hansenula polymorpha capable of alcoholic fermentation of starch and xylan. Metab. Eng. 11: 234-242 (2009).

Wang P, VanEtten HD. Cloning and properties of a cyanide hydratase gene from the phytopathogenic fungus Gloeocercospora sorghi. Biochem. Biophys. Res. Commun. 187: 1048-1054 (1992).

Wang Y, Li W, Siddiqi Y, Kinghorn JR, Unkles SE, Glass AD. Evidence for post-translational regulation of NrtA, the Aspergillus nidulans high-affinity nitrate transporter. New Phytol. 175: 699-706 (2007).

Wang Y, Li W, Siddiqi Y, Symington VF, Kinghorn JR, Unkles SE, Glass AD. Nitrite transport is mediated by the nitrite-specific high-affinity NitA transporter and by nitrate transporters NrtA, NrtB in Aspergillus nidulans. Fungal Genet. Biol. 45: 94-102 (2008).

Wattanachaisaereekul S, Lantz AE, Nielsen ML, Nielsen J. Production of the polyketide 6-MSA in yeast engineered for increased malonyl-CoA supply. Metab. Eng. 10: 246-254 (2008).

Wei D, Li M, Zhang X, Ren Y, Xing L. Identification and characterization of a novel delta12-fatty acid desaturase gene from Rhizopus arrhizus. FEBS Lett. 573: 45-50 (2004).

Wei S, Bravdo BA, Shoseyov O. Fluorescent screening of transgenic Arabidopsis seeds without germination. Plant Physiol. 135: 709-714 (2004).

White MF, Vasquez J, Yang SF, Kirsch JF. Expression of apple 1-aminocyclopropane-1-carboxylate synthase in Escherichia coli: kinetic characterization of wild-type and active-site mutant forms. Proc. Natl. Acad. Sci. U.S.A. 91: 12428-12432 (1994).

Wiechert W. Modeling and simulation: tools for metabolic engineering. J. Biotechnol. 94: 37-63 (2002).

Williams BA, Sillaots S, Tsang A, Storms R. Isolation by genetic complementation of two differentially expressed genes for beta-isopropylmalate dehydrogenase from Aspergillus niger. Curr. Genet. 30: 305-311 (1996).

Williams RS, Davis MA, Howlett BJ. Nitrate reductase of the ascomycetous fungus, Leptosphaeria maculans: gene sequence and chromosomal location. Mol. Gen. Genet. 244: 1-8 (1994).

Witteveen CF, Visser J. Polyol pools in Aspergillus niger. FEMS Microbiol. Lett. 134: 57-62 (1995).

Wu D, Dou X, Hashmi SB, Osmani SA. The Pho80-like cyclin of Aspergillus nidulans regulates development independently of its role in phosphate acquisition. J. Biol. Chem. 279: 37693-37703 (2004).

Wu TS, Linz JE. Recombinational inactivation of the gene encoding nitrate reductase in Aspergillus parasiticus. Appl. Environ. Microbiol. 59: 2998-3002 (1993).

Xuejiang W, Dzyadevych SV, Chovelon JM, Renault NJ, Ling C, Siqing X, Jianfu Z. Conductometric nitrate biosensor based on methyl viologen/Nafion((R))/nitrate reductase interdigitated electrodes. Talanta. 69: 450-455 (2006).

Yu J, Bhatnagar D, Cleveland TE. Completed sequence of aflatoxin pathway gene cluster in Aspergillus parasiticus. FEBS Lett. 564: 126-130 (2004).

Yuan GF, Fu YH, Marzluf GA. nit-4, a pathway-specific regulatory gene of Neurospora crassa, encodes a protein with a putative binuclear zinc DNA-binding domain. Mol. Cell Biol. 11: 5735-5745 (1991).

Zhang Z, Scharer JM, Moo-Young M. Mathematical model for aerobic culture of a recombinant yeast. Bioprocess Engineering 17: 235-240 (1997).

Zhao Q, Yuan S, Wang X, Zhang Y, Zhu H, Lu C. Restoration of mature etiolated cucumber hypocotyl cell wall susceptibility to expansin by pretreatment with fungal pectinases and EGTA in vitro. Plant Physiol. 147: 1874-1885 (2008).

Zucchi TM. RNA-mediated transformation in Aspergillus nidulans recovers gene functions lost by deletion or by point mutations. Cell Mol. Biol. (Noisy-Le-Grand) 42: 889-904 (1996).

Number of references = 248