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HORT640 - Metabolic Plant Physiology
References, aspartate decarboxylase
Albert A, Dhanaraj V, Genschel U, Khan G, Ramjee MK, Pulido R, Sibanda BL, von Delft F, Witty M, Blundell TL, Smith AG, Abell C. Crystal structure of aspartate decarboxylase at 2.2 A resolution provides evidence for an ester in protein self-processing. Nat. Struct. Biol. 5: 289-293 (1998).
Castillo RM, Mizuguchi K, Dhanaraj V, Albert A, Blundell TL, Murzin AG. A six-stranded double-psi beta barrel is shared by several protein superfamilies. Structure Fold. Des. 7: 227-236 (1999).
Chakauya E, Coxon KM, Wei M, Macdonald MV, Barsby T, Abell C, Smith AG. Towards engineering increased pantothenate (vitamin B(5)) levels in plants. Plant Mol. Biol. 68: 493-503 (2008).
Chopra S, Pai H, Ranganathan A. Expression, purification, and biochemical characterization of Mycobacterium tuberculosis aspartate decarboxylase, PanD. Protein Expr. Purif. 25: 533-540 (2002).
Condon S, Collins JK, O'donovan GA. Regulation of arginine and pyrimidine biosynthesis in Pseudomonas putida. J. Gen. Microbiol. 92: 375-383 (1976).
Cremer J, Treptow C, Eggeling L, Sahm H. Regulation of enzymes of lysine biosynthesis in Corynebacterium glutamicum. J. Gen. Microbiol. 134: 3221-3229 (1988).
Cronan JE Jr. Beta-alanine synthesis in Escherichia coli. J. Bacteriol. 141: 1291-1297 (1980).
Cronan JE Jr, Littel KJ, Jackowski S. Genetic and biochemical analyses of pantothenate biosynthesis in Escherichia coli and Salmonella typhimurium. J. Bacteriol. 149: 916-922 (1982).
Dusch N, P hler A, Kalinowski J. Expression of the Corynebacterium glutamicum panD gene encoding L-aspartate-alpha-decarboxylase leads to pantothenate overproduction in Escherichia coli. Appl. Environ. Microbiol. 65: 1530-1539 (1999).
Fouad WM, Altpeter F. Transplastomic expression of bacterial L-aspartate-alpha-decarboxylase enhances photosynthesis and biomass production in response to high temperature stress. Transgenic Res. 18: 707-718 (2009).
Fouad WM, Rathinasabapathi B. Expression of bacterial L-aspartate-alpha-decarboxylase in tobacco increases beta-alanine and pantothenate levels and improves thermotolerance. Plant Mol. Biol. 60: 495-505 (2006).
Gluck MR, Thomas RG, Davis KL, Haroutunian V. Implications for altered glutamate and GABA metabolism in the dorsolateral prefrontal cortex of aged schizophrenic patients. Am. J. Psychiat. 159: 1165-1173 (2002).
Graber R, Kasper P, Malashkevich VN, Sandmeier E, Berger P, Gehring H, Jansonius JN, Christen P. Changing the reaction specificity of a pyridoxal-5'-phosphate-dependent enzyme. Eur. J. Biochem. 232: 686-690 (1995).
Graber R, Kasper P, Malashkevich VN, Strop P, Gehring H, Jansonius JN, Christen P. Conversion of aspartate aminotransferase into an L-aspartate beta-decarboxylase by a triple active-site mutation. J. Biol. Chem. 274: 31203-31208 (1999).
Isupov MN, Antson AA, Dodson EJ, Dodson GG, Dementieva IS, Zakomirdina LN, Wilson KS, Dauter Z, Lebedev AA, Harutyunyan EH. Crystal structure of tryptophanase. J. Mol. Biol. 276: 603-623 (1998).
Johannessen CU, Qu H, Sonnewald U, Hassel L, Fonnum F. Estimation of aspartate synthesis in GABAergic neurons in mice by C-13 NMR spectroscopy. Neuroreport 12: 3729-3732 (2001).
Katahira R, Ashihara H. Profiles of pyrimidine biosynthesis, salvage and degradation in disks of potato (Solanum tuberosum L.) tubers. Planta 215: 821-828 (2002).
Khristoforov RR, Sukhareva BS, Dixon HB, Sparkes MJ, Krasnov VP, Bukrina IM. The interaction of glutamate decarboxylase from Escherichia coli with substrate analogues modified at C-3 and C-4. Biochem. Mol. Biol. Int. 36: 77-85 (1995).
Kochhar S, Mehta PK, Christen P. Assay for aliphatic amino acid decarboxylases by high-performance liquid chromatography. Anal. Biochem. 179: 182-185 (1989).
Kwon AR, Lee BI, Han BW, Ahn HJ, Yang JK, Yoon HJ, Suh SW. Crystallization and preliminary X-ray crystallographic analysis of aspartate 1-decarboxylase from Helicobacter pylori. Acta Crystallogr. D. Biol. Crystallogr. 58: 861-863 (2002).
Lee J, Sperandio V, Frantz DE, Longgood J, Camilli A, Phillips MA, Michael AJ. An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae. J. Biol. Chem. 284: 9899-9907 (2009).
Mehta PK, Christen P. Homology of 1-aminocyclopropane-1-carboxylate synthase, 8-amino-7-oxononanoate synthase, 2-amino-6-caprolactam racemase, 2,2-dialkylglycine decarboxylase, glutamate-1-semialdehyde 2,1-aminomutase ... with aminotransferases. Biochem. Biophys. Res. Commun. 198: 138-143 (1994).
Mehta PK, Christen P. The molecular evolution of pyridoxal-5'-phosphate-dependent enzymes. Adv. Enzymol. Relat. Areas Mol. Biol. 74: 129-184 (2000).
Morgunov I, Srere PA. Interaction between citrate synthase and malate dehydrogenase. Substrate channeling of oxaloacetate. J. Biol. Chem. 273: 29540-29544 (1998).
Novitskaya L, Trevanion SJ, Driscoll S, Foyer CH, Noctor G. How does photorespiration modulate leaf amino acid contents? A dual approach through modelling and metabolite analysis. Plant Cell Environ. 25: 821-835 (2002).
Ottenhof HH, Ashurst JL, Whitney HM, Saldanha SA, Schmitzberger F, Gweon HS, Blundell TL, Abell C, Smith AG. Organisation of the pantothenate (vitamin B5) biosynthesis pathway in higher plants. Plant J. 37: 61-72 (2004).
Pascarella S, Schirch V, Bossa F. Similarity between serine hydroxymethyltransferase and other pyridoxal phosphate-dependent enzymes. FEBS Lett. 331: 145-149 (1993).
Pascarella S, Schirch V, Bossa F. Similarity between serine hydroxymethyltransferase and other pyridoxal phosphate-dependent enzymes. FEBS Lett. 331: 145-149 (1993).
Qu K, Martin DL, Lawrence CE. Motifs and structural fold of the cofactor binding site of human glutamate decarboxylase. Protein Sci. 7: 1092-1105 (1998).
Ramjee MK, Genschel U, Abell C, Smith AG. Escherichia coli L-aspartate-alpha-decarboxylase: preprotein processing and observation of reaction intermediates by electrospray mass spectrometry. Biochem. J. 323: 661-669 (1997).
Scapin G, Blanchard JS. Enzymology of bacterial lysine biosynthesis. Adv. Enzymol. Relat. Areas Mol. Biol. 72: 279-324 (1998).
Sherwin AL. Neuroactive amino acids in focally epileptic human brain: a review. Neurochem. Res. 24: 1387-1395 (1999).
Takahashi N, Yamada T. Pathways for amino acid metabolism by Prevotella intermedia and Prevotella nigrescens. Oral Microbiol. Immunol. 15: 96-102 (2000).
Tolbert WD, Zhang Y, Cottet SE, Bennett EM, Ekstrom JL, Pegg AE, Ealick SE. Mechanism of human S-adenosylmethionine decarboxylase proenzyme processing as revealed by the structure of the S68A mutant. Biochemistry 42: 2386-2395 (2003).
Vacca RA, Christen P, Malashkevich VN, Jansonius JN, Sandmeier E. Substitution of apolar residues in the active site of aspartate aminotransferase by histidine. Effects on reaction and substrate specificity. Eur. J. Biochem. 227: 481-487 (1995).
Williamson JM, Brown GM. Purification and properties of L-aspartate-alpha-decarboxylase, an enzyme that catalyzes the formation of beta-alanine in Escherichia coli. J. Biol. Chem. 254: 8074-8082 (1979).
Number of references = 36
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