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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, anthocyanin or flavonoid

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D. A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48 (2006).

Abrahams S, Lee E, Walker AR, Tanner GJ, Larkin PJ, Ashton AR. The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development. Plant J. 35: 624-636 (2003).

Achike FI, Kwan CY. Nitric oxide, human diseases and the herbal products that affect the nitric oxide signalling pathway. Clin. Exp. Pharmacol. Physiol. 30: 605-615 (2003).

Achnine L, Huhman DV, Farag MA, Sumner LW, Blount JW, Dixon RA. Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula. Plant J. 41: 875-887 (2005).

Aharoni A, De Vos CH, Wein M, Sun Z, Greco R, Kroon A, Mol JN, O'Connell AP. The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco. Plant J. 28: 319-332 (2001).

Ahmad G, Yadav PP, Maurya R. Furanoflavonoid glycosides from Pongamia pinnata fruits. Phytochemistry 65: 921-924 (2004).

Ahmad M, Galland P, Ritz T, Wiltschko R, Wiltschko W. Magnetic intensity affects cryptochrome-dependent responses in Arabidopsis thaliana. Planta 225: 615-624 (2007).

Ahmad M, Jarillo JA, Cashmore AR. Chimeric proteins between cr y1 and cr y2 Arabidopsis blue light photoreceptors indicate overlapping functions and varying protein stability. Plant Cell 10: 197-208 (1998).

Akashi T, Aoki T, Ayabe S. Molecular and biochemical characterization of 2-hydroxyisoflavanone dehydratase. Involvement of carboxylesterase-like proteins in leguminous isoflavone biosynthesis. Plant Physiol. 137: 882-891 (2005).

Akashi T, Aoki T, Ayabe Si. Cloning and functional expression of a cytochrome P450 cDNA encoding 2-hydroxyisoflavanone synthase involved in biosynthesis of the isoflavonoid skeleton in licorice. Plant Physiol. 121: 821-828 (1999).

Akashi T, Sasaki K, Aoki T, Ayabe SI, Yazaki K. Molecular cloning and characterization of a cDNA for pterocarpan 4-dimethylallyltransferase catalyzing the key prenylation step in the biosynthesis of glyceollin, a soybean phytoalexin. Plant Physiol. 149: 683-693 (2009).

Akashi T, Vanetten HD, Sawada Y, Wasmann CC, Uchiyama H, Ayabe SI. Catalytic specificity of pea O-methyltransferases suggests gene duplication for (+)-pisatin biosynthesis. Phytochemistry 67: 2525-2530 (2006).

Al-Hammadi AS, Sreelakshmi Y, Negi S, Siddiqi I, Sharma R. The polycotyledon mutant of tomato shows enhanced polar auxin transport. Plant Physiol. 133: 113-125 (2003).

Al-Rehaily AJ, Albishi OA, El-Olemy MM, Mossa JS. Flavonoids and terpenoids from Helichrysum forskahlii. Phytochemistry 69: 1910-1914 (2008).

Albert KR, Mikkelsen TN, Ro-Poulsen H. Effects of ambient versus reduced UV-B radiation on high arctic Salix arctica assessed by measurements and calculations of chlorophyll a fluorescence parameters from fluorescence transients. Physiol. Plant. 124: 208-226 (2005).

Albert NW, Lewis DH, Zhang H, Irving LJ, Jameson PE, Davies KM. Light-induced vegetative anthocyanin pigmentation in Petunia. J. Exp. Bot. 60: 2191-2202 (2009).

Albert S, Delseny M, Devic M. BANYULS, a novel negative regulator of flavonoid biosynthesis in the Arabidopsis seed coat. Plant J. 11: 289-299 (1997).

Albrecht H, Yoder JI, Phillips DA. Flavonoids promote haustoria formation in the root parasite Triphysaria versicolor. Plant Physiol. 119: 585-592 (1999).

Alfenito MR, Souer E, Goodman CD, Buell R, Mol J, Koes R, Walbot V. Functional complementation of anthocyanin sequestration in the vacuole by widely divergent glutathione S-transferases. Plant Cell 10: 1135-1149 (1998).

Allan AC, Hellens RP, Laing WA. MYB transcription factors that colour our fruit. Trends Plant Sci. 13: 99-102 (2008).

Alleman M, Kermicle JL. Somatic variegation and germinal mutability reflect the position of transposable element Dissociation within the maize R gene. Genetics 135: 189-203 (1993).

Aloni R, Schwalm K, Langhans M, Ullrich CI. Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216: 841-853 (2003).

Amakura Y, Tsutsumi T, Sasaki K, Nakamura M, Yoshida T, Maitani T. Influence of food polyphenols on aryl hydrocarbon receptor-signaling pathway estimated by in vitro bioassay. Phytochemistry 69: 3117-3130 (2008).

Ambrosio SR, Oki Y, Heleno VC, Chaves JS, Nascimento PG, Lichston JE, Constantino MG, Varanda EM, Da Costa FB. Constituents of glandular trichomes of Tithonia diversifolia: relationships to herbivory and antifeedant activity. Phytochemistry 69: 2052-2060 (2008).

Amrhein N, Frank G, Lemm G, Luhmann HB. Inhibition of lignin formation by L-alpha-aminooxy-beta-phenylpropionic acid, an inhibitor of phenylalanine ammonia-lyase. Eur. J. Cell Biol. 29: 139-144 (1983).

Ananvoranich S, Varin L, Gulick P, Ibrahim R. Cloning and regulation of flavonol 3-sulfotransferase in cell-suspension cultures of Flaveria bidentis. Plant Physiol. 106: 485-491 (1994).

Andersen OM, Fossen T, Torskangerpoll K, Fossen A, Hauge U. Anthocyanin from strawberry (Fragaria ananassa) with the novel aglycone, 5-carboxypyranopelargonidin. Phytochemistry 65: 405-410 (2004).

Ando T, Tatsuzawa F, Saito N, Takahashi M, Tsunashima Y, Numajir H, Watanabe H, Kokubun H, Hara R, Seki H, Hashimoto G. Differences in the floral anthocyanin content of red petunias and Petunia exserta. Phytochemistry 54: 495-501 (2000).

Angelo PC, Nunes-Silva CG, Brígido MM, Azevedo JS, Assuncao EN, Sousa AR, Patrício FJ, Rego MM, Peixoto JC, Oliveira WP Jr, Freitas DV, Almeida ER, Viana AM, Souza AF, Andrade EV, Acosta PO, Batista JS, Walter ME, Leomil L, Anjos DA, Coimbra RC, et al. Guarana (Paullinia cupana var. sorbilis), an anciently consumed stimulant from the Amazon rain forest: the seeded-fruit transcriptome. Plant Cell Rep. 27: 117-124 (2008).

Argyros RD, Mathews DE, Chiang YH, Palmer CM, Thibault DM, Etheridge N, Argyros DA, Mason MG, Kieber JJ, Schaller GE. Type B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20: 2102-2116 (2008).

Attridge TH, Stewart GR, Smith H. End-product inhibition of Pisum phenylalanine ammonia-lyase by the Pisum flavonoids. FEBS Lett. 17: 84-86 (1971).

Avila J, Nieto C, Canas L, Benito MJ, Paz-Ares J. Petunia hybrida genes related to the maize regulatory C1 gene and to animal myb proto-oncogenes. Plant J. 3: 553-562 (1993).

Awika JM, Rooney LW. Sorghum phytochemicals and their potential impact on human health. Phytochemistry 65: 1199-1221 (2004).

Aziz N, Paiva NL, May GD, Dixon RA. Transcriptome analysis of alfalfa glandular trichomes. Planta 221: 28-38 (2005).

Bagchi D, Garg A, Krohn RL, Bagchi M, Tran MX, Stohs SJ. Oxygen free radical scavenging abilities of vitamins C and E, and a grape seed proanthocyanidin extract in vitro. Res. Commun. Mol. Pathol. Pharmacol. 95: 179-189 (1997).

Bai Y, Souleimanov A, Smith DL. An inducible activator produced by a Serratia proteamaculans strain and its soybean growth-promoting activity under greenhouse conditions. J. Exp. Bot. 53: 1495-1502 (2002).

Baker RF, Braun DM. tie-dyed1 Functions non-cell autonomously to control carbohydrate accumulation in maize leaves. Plant Physiol. 144: 867-878 (2007).

Baldridge GD, O'Neill NR, Samac DA. Alfalfa (Medicago sativa L.) resistance to the root-lesion nematode, Pratylenchus penetrans: defense-response gene mRNA and isoflavonoid phytoalexin levels in roots. Plant Mol. Biol. 38: 999-1010 (1998).

Ban Y, Honda C, Bessho H, Pang XM, Moriguchi T. Suppression subtractive hybridization identifies genes induced in response to UV-B irradiation in apple skin: isolation of a putative UDP-glucose 4-epimerase. J. Exp. Bot. 58: 1825-1834 (2007).

Bar-Peled M, Fluhr R, Gressel J. Juvenile-specific localization and accumulation of a rhamnosyltransferase and its bitter flavonoid in foliage, flowers, and young citrus fruits. Plant Physiol. 103: 1377-1384 (1993).

Bariola PA, MacIntosh GC, Green PJ. Regulation of S-like ribonuclease levels in Arabidopsis. Antisense inhibition of RNS1 or RNS2 elevates anthocyanin accumulation. Plant Physiol. 119: 331-342 (1999).

Basile A, Sorbo S, Lopez-Saez JA, Castaldo Cobianchi R. Effects of seven pure flavonoids from mosses on germination and growth of Tortula muralis HEDW. (Bryophyta) and Raphanus sativus L. (Magnoliophyta). Phytochemistry 62: 1145-1151 (2003).

Bate NJ, Orr J, Ni W, Meromi A, Nadler-Hassar T, Doerner PW, Dixon RA, Lamb CJ, Elkind Y. Quantitative relationship between phenylalanine ammonia-lyase levels and phenylpropanoid accumulation in transgenic tobacco identifies a rate-determining step in natural product synthesis. Proc. Natl. Acad. Sci. U.S.A. 91: 7608-7612 (1994).

Bate NJ, Rothstein SJ. C6-volatiles derived from the lipoxygenase pathway induce a subset of defense-related genes. Plant J. 16: 561-569 (1998).

Baudry A, Caboche M, Lepiniec L. TT8 controls its own expression in a feedback regulation involving TTG1 and homologous MYB and bHLH factors, allowing a strong and cell-specific accumulation of flavonoids in Arabidopsis thaliana. Plant J. 46: 768-779 (2006).

Baumgardt RL, Oliverio KA, Casal JJ, Hoecker U. SPA1, a component of phytochrome A signal transduction, regulates the light signaling current. Planta 215: 745-753 (2002).

Beevers H. Re: Feild TS, et al. Why leaves turn red in autumn. The role of anthocyanins in senescing leaves of red-osier dogwood. [2001] Plant Physiol 127:566-574. Plant Physiol. 128: 783 (2002).

Bekker M, Bekker R, Brandt VE. Two flavonoid glycosides and a miscellaneous flavan from the bark of Guibourtia coleosperma. Phytochemistry 67: 818-823 (2006).

Beld M, Martin C, Huits H, Stuitje AR, Gerats AG. Flavonoid synthesis in Petunia hybrida: partial characterization of dihydroflavonol-4-reductase genes. Plant Mol. Biol. 13: 491-502 (1989).

Ben Zvi MM, Negre-Zakharov F, Masci T, Ovadis M, Shklarman E, Ben-Meir H, Tzfira T, Dudareva N, Vainstein A. Interlinking showy traits: co-engineering of scent and colour biosynthesis in flowers. Plant Biotechnol. J. 6: 403-415 (2008).

Benavides A, Bassarello C, Montoro P, Vilegas W, Piacente S, Pizza C. Flavonoids and isoflavonoids from Gynerium sagittatum. Phytochemistry 68: 1277-1284 (2007).

Bennett MD, Price HJ, Johnston JS. Anthocyanin inhibits propidium iodide DNA fluorescence in Euphorbia pulcherrima: implications for genome size variation and flow cytometry. Ann. Bot. (Lond.) 101: 777-790 (2008).

Bennett RN, Mellon FA, Rosa EA, Perkins L, Kroon PA. Profiling glucosinolates, flavonoids, alkaloids, and other secondary metabolites in tissues of Azima tetracantha L. (Salvadoraceae). J. Agric. Food Chem. 52: 5856-5862 (2004).

Bennett RN, Wenke T, Freudenberg B, Mellon FA, Ludwig-Muller J. The tu8 mutation of Arabidopsis thaliana encoding a heterochromatin protein 1 homolog causes defects in the induction of secondary metabolite biosynthesis. Plant Biol. (Stuttg.) 7: 348-357 (2005).

Bennett T, Sieberer T, Willett B, Booker J, Luschnig C, Leyser O. The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport. Curr. Biol. 16: 553-563 (2006).

Bergman M, Perelman A, Dubinsky Z, Grossman S. Scavenging of reactive oxygen species by a novel glucurinated flavonoid antioxidant isolated and purified from spinach. Phytochemistry 62: 753-762 (2003).

Bergougnoux V, Hlavackova V, Plotzova R, Novak O, Fellner M. The 7B-1 mutation in tomato (Solanum lycopersicum L.) confers a blue light-specific lower sensitivity to coronatine, a toxin produced by Pseudomonas syringae pv. tomato. J. Exp. Bot. 60: 1219-1230 (2009).

Beritogoli I, Magel E, Abdel-Latif A, Charpentier JP, Jay-Allemand C, Breton C. Expression of genes encoding chalcone synthase, flavanone 3-hydroxylase and dihydroflavonol 4-reductase correlates with flavanol accumulation during heartwood formation in Juglans nigra. Tree Physiol. 22: 291-300 (2002).

Bernhardt J, Stich K, Schwarz-Sommer Z, Saedler H, Wienand U. Molecular analysis of a second functional A1 gene (dihydroflavonol 4-reductase) in Zea mays. Plant J. 14: 483-488 (1998).

Bevan M, Shufflebottom D, Edwards K, Jefferson R, Schuch W. Tissue- and cell-specific activity of a phenylalanine ammonia-lyase promoter in transgenic plants. EMBO J. 8: 1899-1906 (1989).

Bharti AK, Khurana JP. Mutants of Arabidopsis as tools to understand the regulation of phenylpropanoid pathway and UVB protection mechanisms. Photochem. Photobiol. 65: 765-776 (1997).

Bi JL, Felton GW, Murphy JB, Howles PA, Dixon RA, Lamb CJ. Do plant phenolics confer resistance to specialist and generalist insect herbivores?. J. Agric. Food Chem. 45: 4500-4504 (1997).

Bieza K, Lois R. An Arabidopsis mutant tolerant to lethal ultraviolet-B levels shows constitutively elevated accumulation of flavonoids and other phenolics. Plant Physiol. 126: 1105-1115 (2001).

Bilodeau P, Udvardi MK, Peacock WJ, Dennis ES. A prolonged cold treatment-induced cytochrome P450 gene from Arabidopsis thaliana. Plant Cell Environ. 22: 791-800 (1999).

Bjoroy O, Rayyan S, Fossen T, Kalberg K, Andersen OM. C-glycosylanthocyanidins synthesized from C-glycosylflavones. Phytochemistry 70: 278-287 (2009).

Bladergroen MR, Spaink HP. Genes and signal molecules involved in the Rhizobia-Leguminoseae symbiosis. Curr. Opin. Plant Biol. 1: 353-359 (1998).

Blokhina O, Virolainen E, Fagerstedt KV. Antioxidants, oxidative damage and oxygen deprivation stress: a review. Ann. Bot. (Lond.) 91: 179-194 (2003).

Boddu J, Jiang C, Sangar V, Olson T, Peterson T, Chopra S. Comparative structural and functional characterization of sorghum and maize duplications containing orthologous myb transcription regulators of 3-deoxyflavonoid biosynthesis. Plant Mol. Biol. 60: 185-199 (2006).

Boddu J, Svabek C, Ibraheem F, Jones AD, Chopra S. Characterization of a deletion allele of a sorghum Myb gene, yellow seed1 showing loss of 3-deoxyflavonoids. Plant Sci. 169: 542-552 (2005).

Bodeau JP, Walbot V. Regulated transcription of the maize Bronze-2 promoter in electroporated protoplasts requires the C1 and R gene products. Mol. Gen. Genet. 233: 379-387 (1992).

Bodeau JP, Walbot V. Structure and regulation of the maize Bronze2 promoter. Plant Mol. Biol. 32: 599-609 (1996).

Bogs J, Ebadi A, McDavid D, Robinson SP. Identification of the flavonoid hydroxylases from grapevine and their regulation during fruit development. Plant Physiol. 140: 279-291 (2006).

Bohm H, Boeing H, Hempel J, Raab B, Kroke A. Flavonols, flavone and anthocyanins as natural antioxidants of food and their possible role in the prevention of chronic diseases. Z. Ernahrungswiss. 37: 147-163 (1998).

Bongue-Bartelsman M, O'Neill SD, Tong Y, Yoder JI. Characterization of the gene encoding dihydroflavonol 4-reductase in tomato. Gene 138: 153-157 (1994).

Booij-James IS, Dube SK, Jansen MA, Edelman M, Mattoo AK. Ultraviolet-B radiation impacts light-mediated turnover of the photosystem II reaction center heterodimer in Arabidopsis mutants altered in phenolic metabolism. Plant Physiol. 124: 1275-1284 (2000).

Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12: 2383-2394 (2000).

Boss PK, Davies C, Robinson SP. Expression of anthocyanin biosynthesis pathway genes in red and white grapes. Plant Mol. Biol. 32: 565-569 (1996).

Boss PK, Davies C, Robinson SP. Analysis of the expression of anthocyanin pathway genes in developing Vitis vinifera L. cv Shiraz grape berries and the implications for pathway regulation. Plant Physiol. 111: 1059-1066 (1996).

Bottcher C, Roepenack-Lahaye EV, Schmidt J, Schmotz C, Neumann S, Scheel D, Clemens S. Metabolome analysis of biosynthetic mutants reveals diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis thaliana. Plant Physiol. 147: 2107-2120 (2008).

Boudet AM. Evolution and current status of research in phenolic compounds. Phytochemistry 68: 2722-2735 (2007).

Bovy A, De Vos R, Kemper M, Schijlen E, Almenar Pertejo M, Muir S, Collins G, Robinson S, Verhoeyen M, Hughes S, Santos-Buelga C, Van Tunen A. High-flavonol tomatoes resulting from the heterologous expression of the maize transcription factor genes LC and C1. Plant Cell 14: 2509-2526 (2002).

Boylan MT, Quail PH. Oat phytochrome is biologically active in transgenic tomatoes. Plant Cell 1: 765-773 (1989).

Brand S, Holscher D, Schierhorn A, Svatos A, Schroder J, Schneider B. A type III polyketide synthase from Wachendorfia thyrsiflora and its role in diarylheptanoid and phenylphenalenone biosynthesis. Planta 224: 413-428 (2006).

Broughton WJ, Perret X. Genealogy of legume-rhizobium symbioses. Curr. Opin. Plant Biol. 2: 305-311 (1999).

Broun P. Transcriptional control of flavonoid biosynthesis: a complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis. Curr. Opin. Plant Biol. 8: 272-279 (2005).

Brown DE, Rashotte AM, Murphy AS, Normanly J, Tague BW, Peer WA, Taiz L, Muday GK. Flavonoids act as negative regulators of auxin transport in vivo in Arabidopsis. Plant Physiol. 126: 524-535 (2001).

Bruce W, Folkerts O, Garnaat C, Crasta O, Roth B, Bowen B. Expression profiling of the maize flavonoid pathway genes controlled by estradiol-inducible transcription factors CRC and P. Plant Cell 12: 65-80 (2000).

Brugliera F, Holton TA, Stevenson TW, Farcy E, Lu CY, Cornish EC. Isolation and characterization of a cDNA clone corresponding to the Rt locus of Petunia hybrida. Plant J. 5: 81-92 (1994).

Buchholz G, Ehmann B, Wellmann E. Ultraviolet light inhibition of phytochrome-induced flavonoid biosynthesis and DNA photolyase formation in mustard cotyledons (Sinapis alba L.). Plant Physiol. 108: 227-234 (1995).

Buer CS, Djordjevic MA. Architectural phenotypes in the transparent testa mutants of Arabidopsis thaliana. J. Exp. Bot. 60: 751-763 (2009).

Buer CS, Muday GK. The transparent testa4 mutation prevents flavonoid synthesis and alters auxin transport and the response of Arabidopsis roots to gravity and light. Plant Cell 16: 1191-1205 (2004).

Buer CS, Muday GK, Djordjevic MA. Flavonoids are differentially taken up and transported long distances in Arabidopsis. Plant Physiol. 145: 478-490 (2007).

Buer CS, Sukumar P, Muday GK. Ethylene modulates flavonoid accumulation and gravitropic responses in roots of Arabidopsis. Plant Physiol. 140: 1384-1396 (2006).

Burbulis IE, Winkel-Shirley B. Interactions among enzymes of the Arabidopsis flavonoid biosynthetic pathway. Proc. Natl. Acad. Sci. U.S.A. 96: 12929-12934 (1999).

Burchard P, Bilger W, Weissenbock G. Contribution of hydroxycinnamates and flavonoids to epidermal shielding of UV-A and UV-B radiation in developing rye primary leaves as assessed by ultraviolet-induced chlorophyll fluorescence measurements. Plant Cell Environ. 23: 1373-1380 (2000).

Cain CC, Saslowsky DE, Walker RA, Shirley BW. Expression of chalcone synthase and chalcone isomerase proteins in Arabidopsis seedlings. Plant Mol. Biol. 35: 377-381 (1997).

Carbone F, Preuss A, DE Vos RC, D'Amico E, Perrotta G, Bovy AG, Martens S, Rosati C. Developmental, genetic and environmental factors affect the expression of flavonoid genes, enzymes and metabolites in strawberry fruits* Plant Cell Environ. Apr 22 [Epub ahead of print] (2009).

Cardenas L, Aleman E, Nava N, Santana O, Sanchez F, Quinto C. Early responses to Nod factors and mycorrhizal colonization in a non-nodulating Phaseolus vulgaris mutant. Planta 223: 746-754 (2006).

Carey CC, Strahle JT, Selinger DA, Chandler VL. Mutations in the pale aleurone color1 regulatory gene of the Zea mays anthocyanin pathway have distinct phenotypes relative to the functionally similar TRANSPARENT TESTA GLABRA1 gene in Arabidopsis thaliana. Plant Cell 16: 450-464 (2004).

Carrera E, Holman T, Medhurst A, Peer W, Schmuths H, Footitt S, Theodoulou FL, Holdsworth MJ. Gene expression profiling reveals defined functions of the ABC transporter COMATOSE late in phase II of germination. Plant Physiol. 143: 1669-1679 (2007).

Carrie C, Murcha MW, Millar AH, Smith SM, Whelan J. Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol. Biol. 63: 97-108 (2007).

Carson CB, Hattori T, Rosenkrans L, Vasil V, Vasil IK, Peterson PA, McCarty DR. The quiescent/colorless alleles of viviparous1 show that the conserved B3 domain of VP1 is not essential for ABA-regulated gene expression in the seed. Plant J. 12: 1231-1240 (1997).

Casati P, Walbot V. Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content. Plant Physiol. 132: 1739-1754 (2003).

Casati P, Walbot V. Differential accumulation of maysin and rhamnosylisoorientin in leaves of high-altitude landraces of maize after UV-B exposure. Plant Cell Environ. 28: 788-799 (2005).

Cefalu WT, Ye J, Zuberi A, Ribnicky DM, Raskin I, Liu Z, Wang ZQ, Brantley PJ, Howard L, Lefevre M. Botanicals and the metabolic syndrome. Am. J. Clin. Nutr. 87: 481S-487S (2008).

Cha S, Zhang H, Ilarslan HI, Wurtele ES, Brachova L, Nikolau BJ, Yeung ES. Direct profiling and imaging of plant metabolites in intact tissues by using colloidal graphite-assisted laser desorption ionization (GALDI) mass spectrometry. Plant J. 55: 348-360 (2008).

Chagne D, Carlisle CM, Blond C, Volz RK, Whitworth CJ, Oraguzie NC, Crowhurst RN, Allan AC, Espley RV, Hellens RP, Gardiner SE. Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple. BMC Genomics 8: 212 (2007).

Chalker-Scott L. Environmental significance of anthocyanins in plant stress responses. Photochem. Photobiol. 70: 1-9 (1999).

Chandler VL, Radicella JP, Robbins TP, Chen J, Turks D. Two regulatory genes of the maize anthocyanin pathway are homologous: isolation of B utilizing R genomic sequences. Plant Cell 1: 1175-1183 (1989).

Chang CS, Li YH, Chen LT, Chen WC, Hsieh WP, Shin J, Jane WN, Chou SJ, Choi G, Hu JM, Somerville S, Wu SH. LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation. Plant J. 54: 205-219 (2008).

Chang-Quan W, Ye-Feng Z, Tao L. Activity changes of calmodulin and Ca2+-ATPase during low-temperature-induced anthocyanin accumulation in Alternanthera bettzickiana. Physiol. Plant. 124: 260-266 (2005).

Chatterjee M, Sharma P, Khurana JP. Cryptochrome 1 from Brassica napus is up-regulated by blue light and controls hypocotyl/stem growth and anthocyanin accumulation. Plant Physiol. 141: 61-74 (2006).

Chen F, Srinivasa Reddy MS, Temple S, Jackson L, Shadle G, Dixon RA. Multi-site genetic modulation of monolignol biosynthesis suggests new routes for formation of syringyl lignin and wall-bound ferulic acid in alfalfa (Medicago sativa L.). Plant J. 48: 113-124 (2006).

Chen JC, Jiang CZ, Gookin TE, Hunter DA, Clark DG, Reid MS. Chalcone synthase as a reporter in virus-induced gene silencing studies of flower senescence. Plant Mol. Biol. 55: 521-530 (2004).

Chen SM, Coe EH Jr. Control of anthocyanin synthesis by the C locus in maize. Biochem. Genet. 15: 333-346 (1977).

Chimphango SB, Musil CF, Dakora FD. Response of purely symbiotic and NO3-fed nodulated plants of Lupinus luteus and Vicia atropurpurea to ultraviolet-B radiation. J. Exp. Bot. 54: 1771-1784 (2003).

Chin YW, Jones WP, Mi Q, Rachman I, Riswan S, Kardono LB, Chai HB, Farnsworth NR, Cordell GA, Swanson SM, Cassady JM, Kinghorn AD. Cytotoxic clerodane diterpenoids from the leaves of Premna tomentosa. Phytochemistry 67: 1243-1248 (2006).

Chiou CY, Yeh KW. Differential expression of MYB gene (OgMYB1) determines color patterning in floral tissue of Oncidium Gower Ramsey. Plant Mol. Biol. 66: 379-388 (2008).

Cho JH, Park Y, Ahn JH, Lim Y, Rhee S. Structural and functional insights into O-methyltransferase from Bacillus cereus. J. Mol. Biol. 382: 987-997 (2008).

Choi JD, Hoshino A, Park KI, Park IS, Iida S. Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor. Plant J. 49: 924-934 (2007).

Chopra S, Athma P, Peterson T. Alleles of the maize P gene with distinct tissue specificities encode Myb-homologous proteins with C-terminal replacements. Plant Cell 8: 1149-1158 (1996).

Christensen AB, Gregersen PL, Olsen CE, Collinge DB. A flavonoid 7-O-methyltransferase is expressed in barley leaves in response to pathogen attack. Plant Mol. Biol. 36: 219-227 (1998).

Christensen AB, Gregersen PL, Schroder J, Collinge DB. A chalcone synthase with an unusual substrate preference is expressed in barley leaves in response to UV light and pathogen attack. Plant Mol. Biol. 37: 849-857 (1998).

Christinet L, Burdet FX, Zaiko M, Hinz U, Zryd JP. Characterization and functional identification of a novel plant 4,5-extradiol dioxygenase involved in betalain pigment biosynthesis in Portulaca grandiflora. Plant Physiol. 134: 265-274 (2004).

Chuck G, Robbins T, Nijjar C, Ralston E, Courtney-Gutterson N, Dooner HK. Tagging and cloning of a petunia flower color gene with the maize transposable element activator. Plant Cell 5: 371-378 (1993).

Chung IM, Hong SB, Peebles CA, Kim JA, San KY. Effect of the engineered indole pathway on accumulation of phenolic compounds in Catharanthus roseus hairy roots. Biotechnol. Prog. 23: 327-332 (2007).

Claudot AC, Ernst D, Sandermann H, Drouet A. Chalcone synthase activity and polyphenolic compounds of shoot tissues from adult and rejuvenated walnut trees. Planta 203: 275-282 (1997).

Close DC, Davies NW, Beadle CL. Temporal variation of tannins (galloylglucoses), flavonols and anthocyanins in leaves of Eucalyptus nitens seedlings: implications for light attenuation and antioxidant activities. Aust. J. Plant Physiol. 28: 269-278 (2001).

Cocciolone SM, Cone KC. Pl-Bh, an anthocyanin regulatory gene of maize that leads to variegated pigmentation. Genetics 135: 575-588 (1993).

Coiner H, Schroder G, Wehinger E, Liu CJ, Noel JP, Schwab W, Schroder J. Methylation of sulfhydryl groups: a new function for a family of small molecule plant O-methyltransferases. Plant J. 46: 193-205 (2006).

Collette VE, Jameson PE, Schwinn KE, Umaharan P, Davies KM. Temporal and spatial expression of flavonoid biosynthetic genes in flowers of Anthurium andraeanum. Physiol. Plant. 122: 297-304 (2004).

Colliver SP, Morris P, Robbins MP. Differential modification of flavonoid and isoflavonoid biosynthesis with an antisense chalcone synthase construct in transgenic Lotus corniculatus. Plant Mol. Biol. 35: 509-522 (1997).

Cone KC, Burr FA, Burr B. Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A. 83: 9631-9635 (1986).

Cone KC, Cocciolone SM, Burr FA, Burr B. Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant. Plant Cell 5: 1795-1805 (1993).

Cone KC, Cocciolone SM, Moehlenkamp CA, Weber T, Drummond BJ, Tagliani LA, Bowen BA, Perrot GH. Role of the regulatory gene pl in the photocontrol of maize anthocyanin pigmentation. Plant Cell 5: 1807-1816 (1993).

Conn S, Curtin C, Bezier A, Franco C, Zhang W. Purification, molecular cloning, and characterization of glutathione S-transferases (GSTs) from pigmented Vitis vinifera L. cell suspension cultures as putative anthocyanin transport proteins. J. Exp. Bot. 59: 3621-3634 (2008).

Consonni G, Geuna F, Gavazzi G, Tonelli C. Molecular homology among members of the R gene family in maize. Plant J. 3: 335-346 (1993).

Consonni G, Ronchi A, Pilu R, Gavazzi G, Dellaporta SL, Tonelli C. Ectopic anthocyanin pigmentation in maize as a tool for defining interactions between homologous regulatory factors. Mol. Gen. Genet. 256: 265-276 (1997).

Cooley AM, Carvallo G, Willis JH. Is floral diversification associated with pollinator divergence? Flower shape, flower colour and pollinator preference in Chilean Mimulus. Ann. Bot. (Lond.) 101: 641-650 (2008).

Cooper JE, Rao JR. Localized changes in flavonoid biosynthesis in roots of Lotus pedunculatus after infection by Rhizobium loti. Plant Physiol. 100: 444-450 (1992).

Cooper-Driver GA. Contributions of Jeffrey Harborne and co-workers to the study of anthocyanins. Phytochemistry 56: 229-236 (2001).

Cornwell T, Cohick W, Raskin I. Dietary phytoestrogens and health. Phytochemistry 65: 995-1016 (2004).

Cortes-Cruz M, Snook M, McMullen MD. The genetic basis of C-glycosyl flavone B-ring modification in maize (Zea mays L.) silks. Genome 46: 182-94 (2003).

Croft K, Juttner F, Slusarenko AJ. Volatile products of the lipoxygenase pathway evolved from Phaseolus vulgaris (L.) leaves inoculated with Pseudomonas syringae pv phaseolicola. Plant Physiol. 101: 13-24 (1993).

Cummins I, Brazier-Hicks M, Stobiecki M, Franski R, Edwards R. Selective disruption of wheat secondary metabolism by herbicide safeners. Phytochemistry 67: 1722-1730 (2006).

Cummins I, O'Hagan D, Jablonkai I, Cole DJ, Hehn A, Werck-Reichhart D, Edwards R. Cloning, characterization and regulation of a family of phi class glutathione transferases from wheat. Plant Mol. Biol. 52: 591-603 (2003).

Curir P, Lanzotti V, Dolci M, Dolci P, Pasini C, Tollin G. Purification and properties of a new S-adenosyl-L-methionine:flavonoid 4'-O-methyltransferase from carnation (Dianthus caryophyllus L.). Eur. J. Biochem. 270: 3422-3431 (2003).

Cutanda-Perez MC, Ageorges A, Gomez C, Vialet S, Terrier N, Romieu C, Torregrosa L. Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport. Plant Mol. Biol. 69: 633-648 (2009).

Cuyckens F, Claeys M. Mass spectrometry in the structural analysis of flavonoids. J. Mass Spectrom. 39: 1-15 (2004).

D'Auria JC. Acyltransferases in plants: a good time to be BAHD. Curr. Opin. Plant Biol. 9: 331-340 (2006).

Dakora FD, Joseph CM, Phillips DA. Alfalfa (Medicago sativa L.) root exudates contain isoflavonoids in the presence of Rhizobium meliloti. Plant Physiol. 101: 819-824 (1993).

Datta S, Hettiarachchi GH, Deng XW, Holm M. Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. Plant Cell 18: 70-84 (2006).

Datta S, Johansson H, Hettiarachchi C, Irigoyen ML, Desai M, Rubio V, Holm M. LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination. Plant Cell 20: 2324-2338 (2008).

Davies GJ, Sheikh MA, Ratcliffe OJ, Coupland G, Furner IJ. Genetics of homology-dependent gene silencing in Arabidopsis; a role for methylation. Plant J. 12: 791-804 (1997).

Davies KM. Chapter 7. Plant Colour and Fragrance. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 127-163 (2000).

Davison PA, Hunter CN, Horton P. Overexpression of beta-carotene hydroxylase enhances stress tolerance in Arabidopsis. Nature 418: 203-206 (2002).

de Lange P, van Blokland R, Kooter JM, Mol JN. Suppression of flavonoid flower pigmentation genes in Petunia hybrida by the introduction of antisense and sense genes. Curr. Top. Microbiol. Immunol. 197: 57-75 (1995).

De Luca V, Ibrahim RK. Enzymatic synthesis of polymethylated flavonols in Chrysosplenium americanum. II. Substrate interaction and product inhibition studies of flavonol 3-, 6-, and 4'-O-methyltransferases. Arch. Biochem. Biophys. 238: 606-618 (1985).

De Luca V, St Pierre B. The cell and developmental biology of alkaloid biosynthesis. Trends Plant Sci. 5: 168-173 (2000).

de Pater S, Pham K, Memelink J, Kijne J. RAP-1 is an Arabidopsis MYC-like R protein homologue, that binds to G-box sequence motifs. Plant Mol. Biol. 34: 169-174 (1997).

De Schepper S, Leus L, Mertens M, Debergh P, Van Bockstaele E, De Loose M. Somatic polyploidy and its consequences for flower coloration and flower morphology in azalea. Plant Cell Rep. 20: 583-590 (2001).

de Vetten N, Quattrocchio F, Mol J, Koes R. The an11 locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals. Genes Dev. 11: 1422-1434 (1997).

de Vetten N, ter Horst J, van Schaik HP, de Boer A, Mol J, Koes R. A cytochrome b5 is required for full activity of flavonoid 3', 5'-hydroxylase, a cytochrome P450 involved in the formation of blue flower colors. Proc. Natl. Acad. Sci. U.S.A. 96: 778-783 (1999).

Deavours BE, Dixon RA. Metabolic engineering of isoflavonoid biosynthesis in alfalfa. Plant Physiol. 138: 2245-2259 (2005).

Deavours BE, Liu CJ, Naoumkina MA, Tang Y, Farag MA, Sumner LW, Noel JP, Dixon RA. Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula. Plant Mol. Biol. 62: 715-733 (2006).

Debeaujon I, Peeters AJ, Leon-Kloosterziel KM, Koornneef M. The transparent testa12 gene of Arabidopsis encodes a multidrug secondary transporter-like protein required for flavonoid sequestration in vacuoles of the seed coat endothelium. Plant Cell 13: 853-872 (2001).

Deboo GB, Albertsen MC, Taylor LP. Flavanone 3-hydroxylase transcripts and flavonol accumulation are temporally coordinate in maize anthers. Plant J. 7: 703-713 (1995).

Deikman J, Ulrich M. A novel cytokinin-resistant mutant of Arabidopsis with abbreviated shoot development. Planta 195: 440-449 (1995).

DellaPenna D. Plant metabolic engineering. Plant Physiol. 125: 160-163 (2001).

Delpech R. The importance of red pigments to plant life: experiments with anthocyanins. J. Biol. Educ. 34: 206-210 (2000).

Deluc L, Barrieu F, Marchive C, Lauvergeat V, Decendit A, Richard T, Carde JP, Merillon JM, Hamdi S. Characterization of a grapevine R2R3-MYB transcription factor that regulates the phenylpropanoid pathway. Plant Physiol. 140: 499-511 (2006).

Deluc L, Bogs J, Walker AR, Ferrier T, Decendit A, Merillon JM, Robinson SP, Barrieu F. The transcription factor VvMYB5b contributes to the regulation of anthocyanin and proanthocyanidin biosynthesis in developing grape berries. Plant Physiol. 147: 2041-2053 (2008).

Demirkiran O, Ahmed Mesaik M, Beynek H, Abbaskhan A, Iqbal Choudhary M. Cellular reactive oxygen species inhibitory constituents of Hypericum thasium Griseb. Phytochemistry 70: 244-249 (2009).

Deng C, Davis TM. Molecular identification of the yellow fruit color (c) locus in diploid strawberry: a candidate gene approach. Theor. Appl. Genet. 103: 316-322 (2001).

Des Marais DL, Rausher MD. Escape from adaptive conflict after duplication in an anthocyanin pathway gene. Nature 454: 762-765 (2008).

Devaiah BN, Karthikeyan AS, Raghothama KG. WRKY75 transcription factor is a modulator of phosphate acquisition and root development in Arabidopsis. Plant Physiol. 143: 1789-1801 (2007).

Devic M, Guilleminot J, Debeaujon I, Bechtold N, Bensaude E, Koornneef M, Pelletier G, Delseny M. The BANYULS gene encodes a DFR-like protein and is a marker of early seed coat development. Plant J. 19: 387-398 (1999).

Devienne KF, Calgaro-Helena AF, Dorta DJ, Prado IM, Raddi MS, Vilegas W, Uyemura SA, Santos AC, Curti C. Antioxidant activity of isocoumarins isolated from Paepalanthus bromelioides on mitochondria. Phytochemistry 68: 1075-1080 (2007).

Deytieux C, Geny L, Lapaillerie D, Claverol S, Bonneu M, Doneche B. Proteome analysis of grape skins during ripening. J. Exp. Bot. 58: 1851-1862 (2007).

Dhaubhadel S, Farhangkhoee M, Chapman R. Identification and characterization of isoflavonoid specific glycosyltransferase and malonyltransferase from soybean seeds. J. Exp. Bot. 59: 981-994 (2008).

Dhaubhadel S, Gijzen M, Moy P, Farhangkhoee M. Transcriptome analysis reveals a critical role of CHS7 and CHS8 genes for isoflavonoid synthesis in soybean seeds. Plant Physiol. 143: 326-338 (2007).

Dhaubhadel S, McGarvey BD, Williams R, Gijzen M. Isoflavonoid biosynthesis and accumulation in developing soybean seeds. Plant Mol. Biol. 53: 733-743 (2003).

Ding S, Dudley E, Plummer S, Tang J, Newton RP, Brenton AG. Fingerprint profile of Ginkgo biloba nutritional supplements by LC/ESI-MS/MS. Phytochemistry 69: 1555-1564 (2008).

Dixon RA. Phytoestrogens. Annu. Rev. Plant Biol. 55: 225-261 (2004).

Dixon RA, Howles PA, Lamb C, He XZ, Reddy JT. Prospects for the metabolic engineering of bioactive flavonoids and related phenylpropanoid compounds. Adv. Exp. Med. Biol. 439: 55-66 (1998).

Dixon RA, Lamb CJ, Masoud S, Sewalt VJ, Paiva NL. Metabolic engineering: prospects for crop improvement through the genetic manipulation of phenylpropanoid biosynthesis and defense responses--a review. Gene 179: 61-71 (1996).

Dixon RA, Steele CL. Flavonoids and isoflavonoids - a gold mine for metabolic engineering. Trends Plant Sci. 4: 394-400 (1999).

Do CT, Pollet B, Thevenin J, Sibout R, Denoue D, Barriere Y, Lapierre C, Jouanin L. Both caffeoyl coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis. Planta 226: 1117-1129 (2007).

Dombrecht B, Xue GP, Sprague SJ, Kirkegaard JA, Ross JJ, Reid JB, Fitt GP, Sewelam N, Schenk PM, Manners JM, Kazan K. MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-2245 (2007).

Dong X, Braun EL, Grotewold E. Functional conservation of plant secondary metabolic enzymes revealed by complementation of Arabidopsis flavonoid mutants with maize genes. Plant Physiol. 127: 46-57 (2001).

Dooner HK, Nelson OE. Genetic control of UDPglucose:flavonol 3-O-glucosyltransferase in the endosperm of maize. Biochem. Genet. 15: 509-519 (1977).

Downie AB, Dirk LM, Xu Q, Drake J, Zhang D, Dutt M, Butterfield A, Geneve RR, Corum JW 3rd, Lindstrom KG, Snyder JC. A physical, enzymatic, and genetic characterization of perturbations in the seeds of the brownseed tomato mutants. J. Exp. Bot. 55: 961-973 (2004).

Downie AB, Zhang D, Dirk LM, Thacker RR, Pfeiffer JA, Drake JL, Levy AA, Butterfield DA, Buxton JW, Snyder JC. Communication between the maternal testa and the embryo and/or endosperm affect testa attributes in tomato. Plant Physiol. 133: 145-160 (2003).

Drewes SE, van Vuuren SF. Antimicrobial acylphloroglucinols and dibenzyloxy flavonoids from flowers of Helichrysum gymnocomum. Phytochemistry 69: 1745-1749 (2008).

Du J, He ZD, Jiang RW, Ye WC, Xu HX, But PP. Antiviral flavonoids from the root bark of Morus alba L. Phytochemistry 62: 1235-1238 (2003).

Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, Routaboul JM, Alboresi A, Weisshaar B, Lepiniec L. MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana. Plant J. 55: 940-953 (2008).

Duek PD, Fankhauser C. HFR1, a putative bHLH transcription factor, mediates both phytochrome A and cryptochrome signalling. Plant J. 34: 827-836 (2003).

Durbin ML, McCaig B, Clegg MT. Molecular evolution of the chalcone synthase multigene family in the morning glory genome. Plant Mol. Biol. 42: 79-92 (2000).

Ebel J, Schmidt WE, Loyal R. Phytoalexin synthesis in soybean cells: elicitor induction of phenylalanine ammonia-lyase and chalcone synthase mRNAs and correlation with phytoalexin accumulation. Arch. Biochem. Biophys. 232: 240-248 (1984).

Edahiro J, Seki M. Phenylpropanoid metabolite supports cell aggregate formation in strawberry cell suspension culture. J. Biosci. Bioeng. 102: 8-13 (2006).

Edwards EL, Rodrigues JA, Ferreira J, Goodall DM, Rauter AP, Justino J, Thomas-Oates J. Capillary electrophoresis-mass spectrometry characterisation of secondary metabolites from the antihyperglycaemic plant Genista tenera. Electrophoresis 27: 2164-2170 (2006).

Edwards J, Stoltzfus D, Peterson PA. The C1 locus in maize (Zea mays L.): effect on gene expression. Theor. Appl. Genet. 103: 718-724 (2001).

Edwards R, Daniell TJ, Gregory ACE. Methylation reactions and the phytoalexin response in alfalfa suspension cultures. Planta 201: 359-367 (1997).

Edwards WR, Hall JA, Rowlan AR, Schneider-Barfield T, Sun TJ, Patil MA, Pierce ML, Fulcher RG, Bell AA, Essenberg M. Light filtering by epidermal flavonoids during the resistant response of cotton to Xanthomonas protects leaf tissue from light-dependent phytoalexin toxicity. Phytochemistry 69: 2320-2328 (2008).

Ehlting J, Buttner D, Wang Q, Douglas CJ, Somssich IE, Kombrink E. Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms. Plant J. 19: 9-20 (1999).

El Euch C, Jay-Allemand C, Pastuglia M, Doumas P, Charpentier JP, Capelli P, Jouanin L. Expression of antisense chalcone synthase RNA in transgenic hybrid walnut microcuttings. Effect on flavonoid content and rooting ability. Plant Mol. Biol. 38: 467-479 (1998).

Ellerstrom M, Reidt W, Ivanov R, Tiedemann J, Melzer M, Tewes A, Moritz T, Mock HP, Sitbon F, Rask L, Baumlein H. Ectopic expression of EFFECTOR OF TRANSCRIPTION perturbs gibberellin-mediated plant developmental processes. Plant Mol. Biol. 59: 663-681 (2005).

Ellis C, Turner JG. The Arabidopsis mutant cev1 has constitutively active jasmonate and ethylene signal pathways and enhanced resistance to pathogens. Plant Cell 13: 1025-1033 (2001).

Elomaa P, Helariutta Y, Griesbach RJ, Kotilainen M, Seppanen P, Teeri TH. Transgene inactivation in Petunia hybrida is influenced by the properties of the foreign gene. Mol. Gen. Genet. 248: 649-656 (1995).

Elomaa P, Uimari A, Mehto M, Albert VA, Laitinen RA, Teeri TH. Activation of anthocyanin biosynthesis in Gerbera hybrida (Asteraceae) suggests conserved protein-protein and protein-promoter interactions between the anciently diverged monocots and eudicots. Plant Physiol. 133: 1831-1842 (2003).

Endler A, Martens S, Wellmann F, Matern U. Unusually divergent 4-coumarate:CoA-ligases from Ruta graveolens L. Plant Mol. Biol. 67: 335-346 (2008).

Epifano F, Genovese S, Menghini L, Curini M. Chemistry and pharmacology of oxyprenylated secondary plant metabolites. Phytochemistry 68: 939-953 (2007).

Erasto P, Bojase-Moleta G, Majinda RR. Antimicrobial and antioxidant flavonoids from the root wood of Bolusanthus speciosus. Phytochemistry 65: 875-880 (2004).

Espin JC, García-Conesa MT, Tomas-Barberan FA. Nutraceuticals: facts and fiction. Phytochemistry 68: 2986-3008 (2007).

Espley RV, Brendolise C, Chagne D, Kutty-Amma S, Green S, Volz R, Putterill J, Schouten HJ, Gardiner SE, Hellens RP, Allan AC. Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples. Plant Cell 21: 168-183 (2009).

Espley RV, Hellens RP, Putterill J, Stevenson DE, Kutty-Amma S, Allan AC. Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10. Plant J. 49: 414-427 (2007).

Fahrendorf T, Ni W, Shorrosh BS, Dixon RA. Stress responses in alfalfa (Medicago sativa L.) XIX. Transcriptional activation of oxidative pentose phosphate pathway genes at the onset of the isoflavonoid phytoalexin response. Plant Mol. Biol. 28: 885-900 (1995).

Fait A, Hanhineva K, Beleggia R, Dai N, Rogachev I, Nikiforova VJ, Fernie AR, Aharoni A. Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiol. 148: 730-750 (2008).

Fang C, Wan X, Tan H, Jiang C. Separation and determination of isoflavonoids in several kudzu samples by high-performance capillary electrophoresis (HPCE). Ann. Chim. 96: 117-124 (2006).

Farrant JM, Vander Willigen C, Loffell DA, Bartsch S, Whittaker A. An investigation into the role of light during desiccation of three angiosperm resurrection plants. Plant Cell Environ. 26: 1275-1286 (2003).

Farzad M, Griesbach R, Weiss MR. Floral color change in Viola cornuta L. (Violaceae): a model system to study regulation of anthocyanin production. Plant Sci. 162: 225-231 (2002).

Fatland BL, Ke J, Anderson MD, Mentzen WI, Cui LW, Allred CC, Johnston JL, Nikolau BJ, Wurtele ES. Molecular characterization of a heteromeric ATP-citrate lyase that generates cytosolic acetyl-coenzyme A in Arabidopsis. Plant Physiol. 130: 740-756 (2002).

Fatland BL, Nikolau BJ, Wurtele ES. Reverse genetic characterization of cytosolic acetyl-CoA generation by ATP-citrate lyase in Arabidopsis. Plant Cell 17: 182-203 (2005).

Feild TS, Lee DW, Holbrook NM. Why leaves turn red in autumn. the role of anthocyanins in senescing leaves of red-osier dogwood. Plant Physiol. 127: 566-574 (2001).

Feinbaum RL, Ausubel FM. Transcriptional regulation of the Arabidopsis thaliana chalcone synthase gene. Mol. Cell Biol. 8: 1985-1992 (1988).

Ferguson LR, Philpott M. Nutrition and mutagenesis. Annu. Rev. Nutr. 28: 313-329 (2008).

Ferrer JL, Austin MB, Stewart C Jr, Noel JP. Structure and function of enzymes involved in the biosynthesis of phenylpropanoids. Plant Physiol. Biochem. 46: 356-370 (2008).

Ferrer JL, Jez JM, Bowman ME, Dixon RA, Noel JP. Structure of chalcone synthase and the molecular basis of plant polyketide biosynthesis. Nat. Struct. Biol. 6: 775-784 (1999).

Fico G, Rodondi G, Flamini G, Passarella D, Tome F. Comparative phytochemical and morphological analyses of three Italian Primula species. Phytochemistry 68: 1683-1691 (2007).

Figueiredo P, Elhabiri M, Toki K, Saito N, Dangles O, Brouillard R. New aspects of anthocyanin complexation. Intramolecular copigmentation as a means for colour loss? Phytochemistry 41: 301-308 (1996).

Filkowski J, Kovalchuk O, Kovalchuk I. Genome stability of vtc1, tt4, and tt5 Arabidopsis thaliana mutants impaired in protection against oxidative stress. Plant J. 38: 60-69 (2004).

Fiorani F, Umbach AL, Siedow JN. The alternative oxidase of plant mitochondria is involved in the acclimation of shoot growth at low temperature. A study of Arabidopsis AOX1a transgenic plants. Plant Physiol. 139: 1795-1805 (2005).

Flores-Sanchez IJ, Verpoorte R. PKS activities and biosynthesis of cannabinoids and flavonoids in Cannabis sativa L. plants. Plant Cell Physiol. 49: 1767-1782 (2008).

Focks N, Sagasser M, Weisshaar B, Benning C. Characterization of tt15, a novel transparent testa mutant of Arabidopsis thaliana (L.) Heynh. Planta 208: 352-357 (1999).

Ford CM, Boss PK, Hoj PB. Cloning and characterization of Vitis vinifera UDP-glucose:flavonoid 3-O-glucosyltransferase, a homologue of the enzyme encoded by the maize Bronze-1 locus that may primarily serve to glucosylate anthocyanidins in vivo. J. Biol. Chem. 273: 9224-9233 (1998).

Forkmann G, Dangelmayr B. Genetic control of chalcone isomerase activity in flowers of Dianthus caryophyllus. Biochem. Genet. 18: 519-527 (1980).

Forkmann G, Martens S. Metabolic engineering and applications of flavonoids. Curr. Opin. Biotechnol. 12: 155-160 (2001).

Forlani G, Kafarski P, Lejczak B, Wieczorek P. Mode of action of herbicidal derivatives of aminomethylenebisphosphonic acid. 2. Reversal of herbicidal action by aromatic amino acids. J. Plant Growth Regul. 16: 147-152 (1997).

Fossen T, Andersen M OM. Anthocyanins from red onion, Allium cepa, with novel aglycone. Phytochemistry 62: 1217-1220 (2003).

Fossen T, Rayyan S, Andersen OM. Dimeric anthocyanins from strawberry (Fragaria ananassa) consisting of pelargonidin 3-glucoside covalently linked to four flavan-3-ols. Phytochemistry 65: 1421-1428 (2004).

Franca SC, Roberto PG, Marins MA, Puga RD, Rodrigues A, Pereira JO. Biosynthesis of secondary metabolites in sugarcane. Genet. Mol. Biol. 24: 243-250 (2001).

Franco-Zorrilla JM, Martin AC, Solano R, Rubio V, Leyva A, Paz-Ares J. Mutations at CRE1 impair cytokinin-induced repression of phosphate starvation responses in Arabidopsis. Plant J. 32: 353-360 (2002).

Frangne N, Eggmann T, Koblischke C, Weissenbock G, Martinoia E, Klein M. Flavone glucoside uptake into barley mesophyll and Arabidopsis cell culture vacuoles. Energization occurs by H(+)-antiport and ATP-binding cassette-type mechanisms. Plant Physiol. 128: 726-733 (2002).

Franken P, Niesbach-Klosgen U, Weydemann U, Marechal-Drouard L, Saedler H, Wienand U. The duplicated chalcone synthase genes C2 and Whp (white pollen) of Zea mays are independently regulated; evidence for translational control of Whp expression by the anthocyanin intensifying gene in. EMBO J. 10: 2605-2612 (1991).

Franken P, Schrell S, Peterson PA, Saedler H, Wienand U. Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J. 6: 21-30 (1994).

Fraser CM, Thompson MG, Shirley AM, Ralph J, Schoenherr JA, Sinlapadech T, Hall MC, Chapple C. Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities. Plant Physiol. 144: 1986-1999 (2007).

Fraser PD, Enfissi EM, Bramley PM. Genetic engineering of carotenoid formation in tomato fruit and the potential application of systems and synthetic biology approaches. Arch. Biochem. Biophys. 483: 196-204 (2009).

Frydman A, Weisshaus O, Bar-Peled M, Huhman DV, Sumner LW, Marin FR, Lewinsohn E, Fluhr R, Gressel J, Eyal Y. Citrus fruit bitter flavors: isolation and functional characterization of the gene Cm1,2RhaT encoding a 1,2 rhamnosyltransferase, a key enzyme in the biosynthesis of the bitter flavonoids of citrus. Plant J. 40: 88-100 (2004).

Fujiwara H, Tanaka Y, Fukui Y, Nakao M, Ashikari T, Kusumi T. Anthocyanin 5-aromatic acyltransferase from Gentiana triflora. Purification, characterization and its role in anthocyanin biosynthesis. Eur. J. Biochem. 249: 45-51 (1997).

Fujiwara H, Tanaka Y, Yonekura-Sakakibara K, Fukuchi-Mizutani M, Nakao M, Fukui Y, Yamaguchi M, Ashikari T, Kusumi T. cDNA cloning, gene expression and subcellular localization of anthocyanin 5-aromatic acyltransferase from Gentiana triflora. Plant J. 16: 421-431 (1998).

Fukada-Tanaka S, Hoshino A, Hisatomi Y, Habu Y, Hasebe M, Iida S. Identification of new chalcone synthase genes for flower pigmentation in the Japanese and common morning glories. Plant Cell Physiol. 38: 754-758 (1997).

Fukuchi-Mizutani M, Okuhara H, Fukui Y, Nakao M, Katsumoto Y, Yonekura-Sakakibara K, Kusumi T, Hase T, Tanaka Y. Biochemical and molecular characterization of a novel UDP-glucose:anthocyanin 3'-O-glucosyltransferase, a key enzyme for blue anthocyanin biosynthesis, from gentian. Plant Physiol. 132: 1652-1663 (2003).

Fukui Y, Tanaka Y, Kusumi T, Iwashita T, Nomoto K. A rationale for the shift in colour towards blue in transgenic carnation flowers expressing the flavonoid 3',5'-hydroxylase gene. Phytochemistry 63: 15-23 (2003).

Fukusaki E, Harada K, Bamba T, Kobayashi A. An isotope effect on the comparative quantification of flavonoids by means of methylation-based stable isotope dilution coupled with capillary liquid chromatography/mass spectrometry. J. Biosci. Bioeng. 99: 75-77 (2005).

Fulcrand H, Mane C, Preys S, Mazerolles G, Bouchut C, Mazauric JP, Souquet JM, Meudec E, Li Y, Cole RB, Cheynier V. Direct mass spectrometry approaches to characterize polyphenol composition of complex samples. Phytochemistry 69: 3131-3138 (2008).

Funa N, Ohnishi Y, Fujii I, Shibuya M, Ebizuka Y, Horinouchi S. A new pathway for polyketide synthesis in microorganisms. Nature 400: 897-899 (1999).

Gabrielska J, Oszmianski J, Komorowska M, Langner M. Anthocyanin extracts with antioxidant and radical scavenging effect. Z. Naturforsch. [C] 54: 319-324 (1999).

Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P. Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol. Biol. 58: 229-245 (2005).

Gandia-Herrero F, Escribano J, Garcia-Carmona F. Betaxanthins as pigments responsible for visible fluorescence in flowers. Planta 222: 586-593 (2005).

Gao D, Tawa R, Masaki H, Okano Y, Sakurai H. Protective effects of baicalein against cell damage by reactive oxygen species. Chem. Pharm. Bull. (Tokyo) 46: 1383-1387 (1998).

Gavazzi G, Dolfini S, Allegra D, Castiglioni P, Todesco G, Hoxha M. Dap (Defective aleurone pigmentation) mutations affect maize aleurone development. Mol. Gen. Genet. 256: 223-230 (1997).

Gavazzi G, Mereghetti M, Consonni G, Tonelli C. Sn, a light-dependent and tissue-specific gene of maize: the genetic basis of its instability. Genetics 125: 193-199 (1990).

Gebhardt YH, Witte S, Steuber H, Matern U, Martens S. Evolution of flavone synthase I from parsley flavanone 3beta-hydroxylase by site-directed mutagenesis. Plant Physiol. 144: 1442-1454 (2007).

Gerats AG, Bussard J, Coe EH Jr, Larson R. Influence of B and Pl on UDPG:flavonoid-3-O-glucosyltransferase in Zea mays L. Biochem. Genet. 22: 1161-1169 (1984).

Gerats AG, Vrijlandt E, Wallroth M, Schram AW. The influence of the genes An1, An2, and An4 on the activity of the enzyme UDP-glucose:flavonoid 3-O-glucosyltransferase in flowers of Petunia hybrida. Biochem. Genet. 23: 591-598 (1985).

Ghanevati M, Jaworski JG. Engineering and mechanistic studies of the Arabidopsis FAE1 beta-ketoacyl-CoA synthase, FAE1 KCS. Eur. J. Biochem. 269: 3531-3539 (2002).

Giacomelli L, Rudella A, van Wijk KJ. High light response of the thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol. 141: 685-701 (2006).

Giliberto L, Perrotta G, Pallara P, Weller JL, Fraser PD, Bramley PM, Fiore A, Tavazza M, Giuliano G. Manipulation of the blue light photoreceptor cryptochrome 2 in tomato affects vegetative development, flowering time, and fruit antioxidant content. Plant Physiol. 137: 199-208 (2005).

Glassgen WE, Rose A, Madlung J, Koch W, Gleitz J, Seitz HU. Regulation of enzymes involved in anthocyanin biosynthesis in carrot cell cultures in response to treatment with ultraviolet light and fungal elicitors. Planta 204: 490-498 (1998).

Goff SA, Cone KC, Chandler VL. Functional analysis of the transcriptional activator encoded by the maize B gene: evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev. 6: 864-875 (1992).

Goff SA, Cone KC, Fromm ME. Identification of functional domains in the maize transcriptional activator C1: comparison of wild-type and dominant inhibitor proteins. Genes Dev. 5: 298-309 (1991).

Goff SA, Klein TM, Roth BA, Fromm ME, Cone KC, Radicella JP, Chandler VL. Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. EMBO J. 9: 2517-2522 (1990).

Goldsbrough A, Belzile F, Yoder JI. Complementation of the tomato anthocyanin without (aw) mutant using the dihydroflavonol 4-reductase gene. Plant Physiol. 105: 491-496 (1994).

Gollop R, Even S, Colova-Tsolova V, Perl A. Expression of the grape dihydroflavonol reductase gene and analysis of its promoter region. J. Exp. Bot. 53: 1397-1409 (2002).

Gomez C, Terrier N, Torregrosa L, Vialet S, Fournier-Level A, Verries C, Souquet JM, Mazauric JP, Klein M, Cheynier V, Ageorges A. Grapevine MATE-type proteins act as vacuolar H+-dependent acylated anthocyanin transporters. Plant Physiol. 150: 402-415 (2009).

Gong Z, Yamazaki M, Sugiyama M, Tanaka Y, Saito K. Cloning and molecular analysis of structural genes involved in anthocyanin biosynthesis and expressed in a forma-specific manner in Perilla frutescens. Plant Mol. Biol. 35: 915-927 (1997).

Gong ZZ, Yamagishi E, Yamazaki M, Saito K. A constitutively expressed Myc-like gene involved in anthocyanin biosynthesis from Perilla frutescens: molecular characterization, heterologous expression in transgenic plants and transactivation in yeast cells. Plant Mol. Biol. 41: 33-44 (1999).

Gonzalez A, Zhao M, Leavitt JM, Lloyd AM. Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. Plant J. 53: 814-827 (2008).

Gonzali S, Mazzucato A, Perata P. Purple as a tomato: towards high anthocyanin tomatoes. Trends Plant Sci. 14: 237-241 (2009).

Goodman CD, Casati P, Walbot V. A multidrug resistance-associated protein involved in anthocyanin transport in Zea mays. Plant Cell 16: 1812-1826 (2004).

Goodrich J, Carpenter R, Coen ES. A common gene regulates pigmentation pattern in diverse plant species. Cell 68: 955-964 (1992).

Gorton HL, Vogelmann TC. Effects of epidermal cell shape and pigmentation on optical properties of Antirrhinum petals at visible and ultraviolet wavelengths. Plant Physiol. 112: 879-888 (1996).

Gould KS. Nature's Swiss army knife: the diverse protective roles of anthocyanins in leaves. J. Biomed. Biotechnol. 2004: 314-320 (2004).

Gould KS, McKelvie J, Markham KR. Do anthocyanins function as antioxidants in leaves? Imaging of H2O2 in red and green leaves after mechanical injury. Plant Cell Environ. 25: 1261-1269 (2002).

Grace SC, Logan BA. Energy dissipation and radical scavenging by the plant phenylpropanoid pathway. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 355: 1499-1510 (2000).

Graham TL, Graham MY, Subramanian S, Yu O. RNAi silencing of genes for elicitation or biosynthesis of 5-deoxyisoflavonoids suppresses race-specific resistance and hypersensitive cell death in Phytophthora sojae infected tissues. Plant Physiol. 144: 728-740 (2007).

Gravano E, Bussotti F, Strasser RJ, Schaub M, Novak K, Skelly J, Tani C. Ozone symptoms in leaves of woody plants in open-top chambers: ultrastructural and physiological characteristics. Physiol. Plant. 121: 620-633 (2004).

Griesser M, Vitzthum F, Fink B, Bellido ML, Raasch C, Munoz-Blanco J, Schwab W. Multi-substrate flavonol O-glucosyltransferases from strawberry (Fragaria x ananassa) achene and receptacle. J. Exp. Bot. 59: 2611-2625 (2008).

Gronquist M, Bezzerides A, Attygalle A, Meinwald J, Eisner M, Eisner T. Attractive and defensive functions of the ultraviolet pigments of a flower (Hypericum calycinum). Proc. Natl. Acad. Sci. U.S.A. 98: 13745-13750 (2001).

Grotewold E. The genetics and biochemistry of floral pigments. Annu. Rev. Plant Biol. 57: 761-780 (2006).

Grotewold E, Athma P, Peterson T. Alternatively spliced products of the maize P gene encode proteins with homology to the DNA-binding domain of myb-like transcription factors. Proc. Natl. Acad. Sci. U.S.A. 88: 4587-4591 (1991).

Grotewold E, Chamberlin M, Snook M, Siame B, Butler L, Swenson J, Maddock S, Clair GS, Bowen B. Engineering secondary metabolism in maize cells by ectopic expression of transcription factors. Plant Cell 10: 721-740 (1998).

Grotewold E, Drummond BJ, Bowen B, Peterson T. The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset. Cell 76: 543-553 (1994).

Gruber MY, Wang S, Ethier S, Holowachuk J, Bonham-Smith PC, Soroka J, Lloyd A. "HAIRY CANOLA" - Arabidopsis GL3 induces a dense covering of trichomes on Brassica napus seedlings. Plant Mol. Biol. 60: 679-698 (2006).

Gunawardena AH, Greenwood JS, Dengler NG. Programmed cell death remodels lace plant leaf shape during development. Plant Cell 16: 60-73 (2004).

Guo ZJ, Lamb C, Dixon RA. Potentiation of the oxidative burst and isoflavonoid phytoalexin accumulation by serine protease inhibitors. Plant Physiol. 118: 1487-1494 (1998).

Hada H, Hidema J, Maekawa M, Kumagai T. Higher amounts of anthocyanins and UV-absorbing compounds effectively lowered CPD photorepair in purple rice (Oryza sativa L.). Plant Cell Environ. 26: 1691-1701 (2003).

Hagmann ML, Heller W, Grisebach H. Induction and characterization of a microsomal flavonoid 3'-hydroxylase from parsley cell cultures. Eur. J. Biochem. 134: 547-554 (1983).

Hahlbrock K, Grisebach H. Enzymatic controls in the biosynthesis of lignin and flavonoids. Annu. Rev. Plant Physiol. 30: 105-130 (1979).

Hain R, Grimmig B. Chapter 11. Modification of Plant Secondary Metabolism by Genetic Engineering. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 217-231 (2000).

Halbwirth H, Stich K. An NADPH and FAD dependent enzyme catalyzes hydroxylation of flavonoids in position 8. Phytochemistry 67: 1080-1087 (2006).

Hale KL, McGrath SP, Lombi E, Stack SM, Terry N, Pickering IJ, George GN, Pilon-Smits EA. Molybdenum sequestration in Brassica species. A role for anthocyanins? Plant Physiol. 126: 1391-1402 (2001).

Hall D, De Luca V. Mesocarp localization of a bi-functional resveratrol/hydroxycinnamic acid glucosyltransferase of Concord grape (Vitis labrusca). Plant J. 49: 579-591 (2007).

Halliwell B. Oxidative stress in cell culture: an under-appreciated problem?. FEBS Lett. 540: 3-6 (2003).

Han YJ, Kim YM, Lee JY, Kim SJ, Cho KC, Chandrasekhar T, Song PS, Woo YM, Kim JI. Production of purple-colored creeping bentgrass using maize transcription factor genes Pl and Lc through Agrobacterium-mediated transformation. Plant Cell Rep. 28: 397-406 (2009).

Hannah MA, Wiese D, Freund S, Fiehn O, Heyer AG, Hincha DK. Natural genetic variation of freezing tolerance in Arabidopsis. Plant Physiol. 142: 98-112 (2006).

Hans J, Brandt W, Vogt T. Site-directed mutagenesis and protein 3D-homology modelling suggest a catalytic mechanism for UDP-glucose-dependent betanidin 5-O-glucosyltransferase from Dorotheanthus bellidiformis. Plant J. 39: 319-333 (2004).

Hanson MA, Gaut BS, Stec AO, Fuerstenberg SI, Goodman MM, Coe EH, Doebley JF. Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. Genetics 143: 1395-1407 (1996).

Hanumappa M, Choi G, Ryu S, Choi G. Modulation of flower colour by rationally designed dominant-negative chalcone synthase. J. Exp. Bot. 58: 2471-2478 (2007).

Haraguchi H, Kanada M, Fukuda A, Naruse K, Okamura N, Yagi A. An inhibitor of aldose reductase and sorbitol accumulation from Anthocepharus chinensis. Planta Med. 64: 68-69 (1998).

Harborne JB, Williams CA. Anthocyanins and other flavonoids. Nat. Prod. Rep. 12: 639-657 (1995).

Harborne JB, Williams CA. Advances in flavonoid research since 1992. Phytochemistry 55: 481-504 (2000).

Harding SA, Leshkevich J, Chiang VL, Tsai CJ. Differential substrate inhibition couples kinetically distinct 4-coumarate:coenzyme A ligases with spatially distinct metabolic roles in quaking aspen. Plant Physiol. 128: 428-438 (2002).

Harris LJ, Currie K, Chandler VL. Large tandem duplication associated with a Mu2 insertion in Zea mays B-Peru gene. Plant Mol. Biol. 25: 817-828 (1994).

Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B. Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. Plant Mol. Biol. 57: 155-171 (2005).

Harvaux M, Kloppstech K. The protective functions of carotenoid and flavonoid pigments against excess visible radiation at chilling temperature investigated in Arabidopsis npq and tt mutants. Planta 213: 953-966 (2001).

Hattori T, Terada T, Hamasuna S. Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1. Plant J. 7: 913-925 (1995).

Hattori T, Vasil V, Rosenkrans L, Hannah LC, McCarty DR, Vasil IK. The Viviparous-1 gene and abscisic acid activate the C1 regulatory gene for anthocyanin biosynthesis during seed maturation in maize. Genes Dev. 6: 609-618 (1992).

Hauffe KD, Lee SP, Subramaniam R, Douglas CJ. Combinatorial interactions between positive and negative cis-acting elements control spatial patterns of 4CL-1 expression in transgenic tobacco. Plant J. 4: 235-253 (1993).

Hausler RE, Rademacher T, Li J, Lipka V, Fischer KL, Schubert S, Kreuzaler F, Hirsch HJ. Single and double overexpression of C4-cycle genes had differential effects on the pattern of endogenous enzymes, attenuation of photorespiration and on contents of UV protectants in transgenic potato and tobacco plants. J. Exp. Bot. 52: 1785-1803 (2001).

He XZ, Dixon RA. Genetic manipulation of isoflavone 7-O-methyltransferase enhances biosynthesis of 4'-O-methylated isoflavonoid phytoalexins and disease resistance in alfalfa. Plant Cell 12: 1689-1702 (2000).

He XZ, Reddy JT, Dixon RA. Stress responses in alfalfa (Medicago sativa L). XXII. cDNA cloning and characterization of an elicitor-inducible isoflavone 7-O-methyltransferase. Plant Mol. Biol. 36: 43-54 (1998).

Heddad M, Noren H, Reiser V, Dunaeva M, Andersson B, Adamska I. Differential expression and localization of early light-induced proteins in Arabidopsis thaliana. Plant Physiol. 142: 75-87 (2006).

Hedren M, Nordstrom S. Polymorphic populations of Dactylorhiza incarnata s.l. (Orchidaceae) on the Baltic island of Gotland: morphology, habitat preference and genetic differentiation. Ann. Bot. (Lond.) 104: 527-542 (2009).

Heinrich G, Pfeifhofer HW, Stabentheiner E, Sawidis T. Glandular hairs of Sigesbeckia jorullensis Kunth (Asteraceae): morphology, histochemistry and composition of essential oil. Ann. Bot. (Lond.) 89: 459-469 (2002).

Helariutta Y, Elomaa P, Kotilainen M, Seppanen P, Teeri TH. Cloning of cDNA coding for dihydroflavonol-4-reductase (DFR) and characterization of dfr expression in the corollas of Gerbera hybrida var. Regina (Compositae). Plant Mol. Biol. 22: 183-193 (1993).

Hemleben V, Dressel A, Epping B, Lukacin R, Martens S, Austin M. Characterization and structural features of a chalcone synthase mutation in a white-flowering line of Matthiola incana R. Br. (Brassicaceae). Plant Mol. Biol. 55: 455-465 (2004).

Hemm MR, Herrmann KM, Chapple C. AtMYB4: a transcription factor general in the battle against UV. Trends Plant Sci. 6: 135-136 (2001).

Hemm MR, Rider SD, Ogas J, Murry DJ, Chapple C. Light induces phenylpropanoid metabolism in Arabidopsis roots. Plant J. 38: 765-778 (2004).

Hernandez I, Alegre L, Munne-Bosch S. Enhanced oxidation of flavan-3-ols and proanthocyanidin accumulation in water-stressed tea plants. Phytochemistry 67: 1120-1126 (2006).

Hernandez I, Alegre L, Van Breusegem F, Munne-Bosch S. How relevant are flavonoids as antioxidants in plants? Trends Plant Sci. 14: 125-132 (2009).

Hieber AD, Mudalige-Jayawickrama RG, Kuehnle AR. Color genes in the orchid Oncidium Gower Ramsey: identification, expression, and potential genetic instability in an interspecific cross. Planta 223: 521-531 (2006).

Himi E, Noda K. Isolation and location of three homoeologous dihydroflavonol-4-reductase (DFR) genes of wheat and their tissue-dependent expression. J. Exp. Bot. 55: 365-375 (2004).

Hirai MY, Saito K. Post-genomics approaches for the elucidation of plant adaptive mechanisms to sulphur deficiency. J. Exp. Bot. 55: 1871-1879 (2004).

Hiratsu K, Matsui K, Koyama T, Ohme-Takagi M. Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34: 733-739 (2003).

Hirayama C, Ono H, Tamura Y, Konno K, Nakamura M. Regioselective formation of quercetin 5-O-glucoside from orally administered quercetin in the silkworm, Bombyx mori. Phytochemistry 69: 1141-1149 (2008).

Hirayama C, Ono H, Tamura Y, Nakamura M. C-prolinylquercetins from the yellow cocoon shell of the silkworm, Bombyx mori. Phytochemistry 67: 579-583 (2006).

Hirner AA, Seitz HU. Isoforms of chalcone synthase in Daucus carota L. and their differential expression in organs from the European wild carrot and in ultraviolet-A-irradiated cell cultures. Planta 210: 993-998 (2000).

Hirner AA, Veit S, Seitz HU. Regulation of anthocyanin biosynthesis in UV-A-irradiated cell cultures of carrot and in organs of intact carrot plants. Plant Sci. 161: 315-322 (2001).

Hirotani M, Kuroda R, Suzuki H, Yoshikawa T. Cloning and expression of UDP-glucose:flavonoid 7-O-glucosyltransferase from hairy root cultures of Scutellaria baicalensis. Planta 210: 1006-1013 (2000).

Hoang Anh NT, Van Sung T, Porzel A, Franke K, Wessjohann LA. Homoisoflavonoids from Ophiopogon japonicus Ker-Gawler. Phytochemistry 62: 1153-1158 (2003).

Hoballah ME, Gubitz T, Stuurman J, Broger L, Barone M, Mandel T, Dell'Olivo A, Arnold M, Kuhlemeier C. Single gene-mediated shift in pollinator attraction in Petunia. Plant Cell 19: 779-790 (2007).

Hoch WA, Singsaas EL, McCown BH. Resorption protection. Anthocyanins facilitate nutrient recovery in autumn by shielding leaves from potentially damaging light levels. Plant Physiol. 133: 1296-1305 (2003).

Hoecker U, Xu Y, Quail PH. SPA1: a new genetic locus involved in phytochrome A-specific signal transduction. Plant Cell 10: 19-33 (1998).

Hoffmann T, Kalinowski G, Schwab W. RNAi-induced silencing of gene expression in strawberry fruit (Fragaria x ananassa) by agroinfiltration: a rapid assay for gene function analysis. Plant J. 48: 818-826 (2006).

Hofmann RW, Campbell BD, Bloor SJ, Swinny EE, Markham KR, Ryan KG, Fountain DW. Responses to UV-B radiation in Trifolium repens L. - physiological links to plant productivity and water availability. Plant Cell Environ. 26: 603-612 (2003).

Hollick JB, Patterson GI, Coe EH Jr, Cone KC, Chandler VL. Allelic interactions heritably alter the activity of a metastable maize pl allele. Genetics 141: 709-719 (1995).

Holton TA. Modification of flower colour via manipulation of P450 gene expression in transgenic plants. Drug Metabol. Drug Interact. 12: 359-368 (1995).

Holton TA, Brugliera F, Lester DR, Tanaka Y, Hyland CD, Menting JG, Lu CY, Farcy E, Stevenson TW, Cornish EC. Cloning and expression of cytochrome P450 genes controlling flower colour. Nature 366: 276-279 (1993).

Holton TA, Cornish EC. Genetics and biochemistry of anthocyanin biosynthesis. Plant Cell 7: 1071-1083 (1995).

Horiuchi I, Prithiviraj B, Bais HP, Kimball BA, Vivanco JM. Soil nematodes mediate positive interactions between legume plants and rhizobium bacteria. Planta 222: 848-857 (2005).

Hormaetxe K, Becerril JM, Fleck I, Pinto M, Garcia-Plazaola JI. Functional role of red (retro)-carotenoids as passive light filters in the leaves of Buxus sempervirens L.: increased protection of photosynthetic tissues? J. Exp. Bot. 56: 2629-2636 (2005).

Hoshino A, Abe Y, Saito N, Inagaki Y, Iida S. The gene encoding flavanone 3-hydroxylase is expressed normally in the pale yellow flowers of the Japanese morning glory carrying the speckled mutation which produce neither flavonol nor anthocyanin but accumulate chalcone, aurone and flavanone. Plant Cell Physiol. 38: 970-974 (1997).

Hoshino A, Inagaki Y, Iida S. Structural analysis of Tpn1, a transposable element isolated from Japanese morning glory bearing variegated flowers. Mol. Gen. Genet. 247: 114-117 (1995).

Howles PA, Sewalt V, Paiva NL, Elkind Y, Bate NJ, Lamb C, Dixon RA. Overexpression of L-phenylalanine ammonia-lyase in transgenic tobacco plants reveals control points for flux into phenylpropanoid biosynthesis. Plant Physiol. 112: 1617-1624 (1996).

Hrazdina G, Wagner GJ. Metabolic pathways as enzyme complexes: evidence for the synthesis of phenylpropanoids and flavonoids on membrane associated enzyme complexes. Arch. Biochem. Biophys. 237: 88-100 (1985).

Hrazdina G, Weeden NF. Enzymatic control of anthocyanin expression in the flowers of pea (Pisum sativum) mutants. Biochem. Genet. 24: 309-317 (1986).

Hsieh K, Huang AH. Tapetosomes in Brassica tapetum accumulate endoplasmic reticulum-derived flavonoids and alkanes for delivery to the pollen surface. Plant Cell 19: 582-596 (2007).

Hu J, Anderson B, Wessler SR. Isolation and characterization of rice R genes: evidence for distinct evolutionary paths in rice and maize. Genetics 142: 1021-1031 (1996).

Hu J, Reddy VS, Wessler SR. The rice R gene family: two distinct subfamilies containing several miniature inverted-repeat transposable elements. Plant Mol. Biol. 42: 667-678 (2000).

Hu WJ, Kawaoka A, Tsai CJ, Lung J, Osakabe K, Ebinuma H, Chiang VL. Compartmentalized expression of two structurally and functionally distinct 4-coumarate:CoA ligase genes in aspen (Populus tremuloides). Proc. Natl. Acad. Sci. U.S.A. 95: 5407-5412 (1998).

Huang Z, Liang M, Peng J, Xing T, Wang X. Exogenous ammonium inhibits petal pigmentation and expansion in Gerbera hybrida. Physiol. Plant. 133: 254-265 (2008).

Hughes NM, Vogelmann TC, Smith WK. Optical effects of abaxial anthocyanin on absorption of red wavelengths by understorey species: revisiting the back-scatter hypothesis. J. Exp. Bot. 59: 3435-3442 (2008).

Huits HS, Gerats AG, Kreike MM, Mol JN, Koes RE. Genetic control of dihydroflavonol 4-reductase gene expression in Petunia hybrida. Plant J. 6: 295-310 (1994).

Husaineid SS, Kok RA, Schreuder ME, Hanumappa M, Cordonnier-Pratt MM, Pratt LH, van der Plas LH, van der Krol AR. Overexpression of homologous phytochrome genes in tomato: exploring the limits in photoperception. J. Exp. Bot. 58: 615-626 (2007).

Iannetta PP, Escobar NM, Ross HA, Souleyre EJ, Hancock RD, Witte CP, Davies HV. Identification, cloning and expression analysis of strawberry (Fragaria x ananassa) mitochondrial citrate synthase and mitochondrial malate dehydrogenase. Physiol. Plant. 121: 15-26 (2004).

Ibdah M, Krins A, Seidlitz HK, Heller W, Strack D, Vogt T. Spectral dependence of flavonol and betacyanin accumulation in Mesembryanthemum crystallinum under enhanced ultraviolet radiation. Plant Cell Environ. 25: 1145-1154 (2002).

Iijima Y, Nakamura Y, Ogata Y, Tanaka K, Sakurai N, Suda K, Suzuki T, Suzuki H, Okazaki K, Kitayama M, Kanaya S, Aoki K, Shibata D. Metabolite annotations based on the integration of mass spectral information. Plant J. 54: 949-962 (2008).

Ioset JR, Urbaniak B, Ndjoko-Ioset K, Wirth J, Martin F, Gruissem W, Hostettmann K, Sautter C. Flavonoid profiling among wild type and related GM wheat varieties. Plant Mol. Biol. 65: 645-654 (2007).

Irish EE, McMurray D. Rejuvenation by shoot apex culture recapitulates the developmental increase of methylation at the maize gene pl-blotched. Plant Mol. Biol. 60: 747-758 (2006).

Isayenkova J, Wray V, Nimtz M, Strack D, Vogt T. Cloning and functional characterisation of two regioselective flavonoid glucosyltransferases from Beta vulgaris. Phytochemistry 67: 1598-1612 (2006).

Ishihara A, Asada Y, Takahashi Y, Yabe N, Komeda Y, Nishioka T, Miyagawa H, Wakasa K. Metabolic changes in Arabidopsis thaliana expressing the feedback-resistant anthranilate synthase alpha subunit gene OASA1D. Phytochemistry 67: 2349-2362 (2006).

Jaakola L, Maatta K, Pirttila AM, Torronen R, Karenlampi S, Hohtola A. Expression of genes involved in anthocyanin biosynthesis in relation to anthocyanin, proanthocyanidin, and flavonol levels during bilberry fruit development. Plant Physiol. 130: 729-739 (2002).

Jaakola L, Maatta-Riihinen K, Karenlampi S, Hohtola A. Activation of flavonoid biosynthesis by solar radiation in bilberry (Vaccinium myrtillus L) leaves. Planta 218: 721-728 (2004).

Jackson D, Culianez-Macia F, Prescott AG, Roberts K, Martin C. Expression patterns of myb genes from Antirrhinum flowers. Plant Cell 3: 115-125 (1991).

Jackson JA, Jenkins GI. Extension-growth responses and expression of flavonoid biosynthesis genes in the Arabidopsis hy4 mutant. Planta 197: 233-239 (1995).

Jain A, Poling MD, Karthikeyan AS, Blakeslee JJ, Peer WA, Titapiwatanakun B, Murphy AS, Raghothama KG. Differential effects of sucrose and auxin on localized phosphate deficiency-induced modulation of different traits of root system architecture in Arabidopsis. Plant Physiol. 144: 232-247 (2007).

Jakoby MJ, Falkenhan D, Mader MT, Brininstool G, Wischnitzki E, Platz N, Hudson A, Hulskamp M, Larkin J, Schnittger A. Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. Plant Physiol. 148: 1583-1602 (2008).

Jassbi AR. Chemistry and biological activity of secondary metabolites in Euphorbia from Iran. Phytochemistry 67: 1977-1984 (2006).

Jayaram C, Peterson PA. Anthocyanin pigmentation and transposable elements in maize aleurone. Plant Breeding Reviews 8: 91-137 (1990).

Jez JM, Bowman ME, Dixon RA, Noel JP. Structure and mechanism of the evolutionarily unique plant enzyme chalcone isomerase. Nat. Struct. Biol. 7: 786-791 (2000).

Jiang C, Schommer CK, Kim SY, Suh DY. Cloning and characterization of chalcone synthase from the moss, Physcomitrella patens. Phytochemistry 67: 2531-2540 (2006).

Jiang CZ, Lu F, Imsabai W, Meir S, Reid MS. Silencing polygalacturonase expression inhibits tomato petiole abscission. J. Exp. Bot. 59: 973-979 (2008).

Johnson ET, Ryu S, Yi H, Shin B, Cheong H, Choi G. Alteration of a single amino acid changes the substrate specificity of dihydroflavonol 4-reductase. Plant J. 25: 325-333 (2001).

Johnson ET, Yi H, Shin B, Oh BJ, Cheong H, Choi G. Cymbidium hybrida dihydroflavonol 4-reductase does not efficiently reduce dihydrokaempferol to produce orange pelargonidin-type anthocyanins. Plant J. 19: 81-85 (1999).

Jones PR, Moller BL, Hoj PB. The UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase that catalyzes the last step in synthesis of the cyanogenic glucoside dhurrin in Sorghum bicolor. Isolation, cloning, heterologous expression, and substrate specificity. J. Biol. Chem. 274: 35483-35491 (1999).

Jorgensen K, Rasmussen AV, Morant M, Nielsen AH, Bjarnholt N, Zagrobelny M, Bak S, Moller BL. Metabolon formation and metabolic channeling in the biosynthesis of plant natural products. Curr. Opin. Plant Biol. 8: 280-291 (2005).

Joshi CP, Chiang VL. Conserved sequence motifs in plant S-adenosyl-L-methionine-dependent methyltransferases. Plant Mol. Biol. 37: 663-674 (1998).

Julkunen-Tiitto R, Haggman H, Aphalo PJ, Lavola A, Tegelberg R, Veteli T. Growth and defense in deciduous trees and shrubs under UV-B. Environ. Pollut. 137: 404-414 (2005).

Julsing MK, Koulman A, Woerdenbag HJ, Quax WJ, Kayser O. Combinatorial biosynthesis of medicinal plant secondary metabolites. Biomol. Eng. 23: 265-279 (2006).

Junghanns KT, Kneusel RE, Groger D, Matern U. Differential regulation and distribution of acridone synthase in Ruta graveolens. Phytochemistry 49: 403-411 (1998).

Juvvadi PR, Seshime Y, Kitamoto K. Genomics reveals traces of fungal phenylpropanoid-flavonoid metabolic pathway in the filamentous fungus Aspergillus oryzae. J. Microbiol. 43 :475-486 (2005).

Kakiuchi Y, Galis I, Tamogami S, Wabiko H. Reduction of polar auxin transport in tobacco by the tumorigenic Agrobacterium tumefaciens AK-6b gene. Planta 223: 237-247 (2006).

Kaltenbach M, Schroder G, Schmelzer E, Lutz V, Schroder J. Flavonoid hydroxylase from Catharanthus roseus: cDNA, heterologous expression, enzyme properties and cell-type specific expression in plants. Plant J. 19: 183-193 (1999).

Kamada-Nobusada T, Hayashi M, Fukazawa M, Sakakibara H, Nishimura M. A putative peroxisomal polyamine oxidase, AtPAO4, is involved in the polyamine catabolism in Arabidopsis thaliana. Plant Cell Physiol. 49: 1272-1282 (2008).

Kaneyuki T, Noda Y, Traber MG, Mori A, Packer L. Superoxide anion and hydroxyl radical scavenging activities of vegetable extracts measured using electron spin resonance. Biochem. Mol. Biol. Int. 47: 979-989 (1999).

Kao CY, Cocciolone SM, Vasil IK, McCarty DR. Localization and interaction of the cis-acting elements for abscisic acid, VIVIPAROUS1, and light activation of the C1 gene of maize. Plant Cell 8: 1171-1179 (1996).

Karamloo F, Wangorsch A, Kasahara H, Davin LB, Haustein D, Lewis NG, Vieths S. Phenylcoumaran benzylic ether and isoflavonoid reductases are a new class of cross-reactive allergens in birch pollen, fruits and vegetables. Eur. J. Biochem. 268: 5310-5320 (2001).

Katerere DR, Gray AI, Kennedy AR, Nash RJ, Waigh RD. Cyclobutanes from Combretum albopunctatum. Phytochemistry 65: 433-438 (2004).

Katsumoto Y, Fukuchi-Mizutani M, Fukui Y, Brugliera F, Holton TA, Karan M, Nakamura N, Yonekura-Sakakibara K, Togami J, Pigeaire A, Tao GQ, Nehra NS, Lu CY, Dyson BK, Tsuda S, Ashikari T, Kusumi T, Mason JG, Tanaka Y. Engineering of the rose flavonoid biosynthetic pathway successfully generated blue-hued flowers accumulating delphinidin. Plant Cell Physiol. 48: 1589-1600 (2007).

Keegstra K, Raikhel N. Plant glycosyltransferases. Curr. Opin. Plant Biol. 4: 219-224 (2001).

Keskitalo J, Bergquist G, Gardestrom P, Jansson S. A cellular timetable of autumn senescence. Plant Physiol. 139: 1635-1648 (2005).

Kim BG, Lee Y, Hur HG, Lim Y, Ahn JH. Flavonoid 3'-O-methyltransferase from rice: cDNA cloning, characterization and functional expression. Phytochemistry 67: 387-394 (2006).

Kim J, Yi H, Choi G, Shin B, Song PS, Choi G. Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction. Plant Cell 15: 2399-2407 (2003).

Kim JH, Lee YJ, Kim BG, Lim Y, Ahn JH. Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis. Mol. Cells 25: 312-316 (2008).

Kitada C, Gong Z, Tanaka Y, Yamazaki M, Saito K. Differential expression of two cytochrome P450s involved in the biosynthesis of flavones and anthocyanins in chemo-varietal forms of Perilla frutescens. Plant Cell Physiol. 42: 1338-1344 (2001).

Kitada C, Gong ZZ, Tanaka Y, Yamazaki M, Saito K. Differential expression of two cytochrome P450s involved in the biosynthesis of flavones and anthocyanins in chemo-varietal forms of Perilla frutescens. Plant Cell Physiol. 42: 1338-1344 (2001).

Kitamura S, Shikazono N, Tanaka A. TRANSPARENT TESTA 19 is involved in the accumulation of both anthocyanins and proanthocyanidins in Arabidopsis. Plant J. 37: 104-114 (2004).

Kliebenstein DJ, Lim JE, Landry LG, Last RL. Arabidopsis UVR8 regulates ultraviolet-B signal transduction and tolerance and contains sequence similarity to human regulator of chromatin condensation 1. Plant Physiol. 130: 234-243 (2002).

Ko JH, Kim JH, Jayanty SS, Howe GA, Han KH. Loss of function of COBRA, a determinant of oriented cell expansion, invokes cellular defence responses in Arabidopsis thaliana. J. Exp. Bot. 57: 2923-2936 (2006).

Kobayashi S, Asai T, Fujimoto Y, Kohshima S. Anti-herbivore structures of Paulownia tomentosa: morphology, distribution, chemical constituents and changes during shoot and leaf development. Ann. Bot. (Lond.) 101: 1035-1047 (2008).

Kobayashi S, Ishimaru M, Ding CK, Yakushiji H, Goto N. Comparison of UDP-glucose:flavonoid 3-O-glucosyltransferase (UFGT) gene sequences between white grapes (Vitis vinifera) and their sports with red skin. Plant Sci. 160: 543-550 (2001).

Kobayashi S, Ishimaru M, Hiraoka K, Honda C. Myb-related genes of the Kyoho grape (Vitis labruscana) regulate anthocyanin biosynthesis. Planta 215: 924-933 (2002).

Koes R, Verweij W, Quattrocchio F. Flavonoids: a colorful model for the regulation and evolution of biochemical pathways. Trends Plant Sci. 10: 236-242 (2005).

Koes RE, Van Blokland R, Quattrocchio F, Van Tunen AJ, Mol J. Chalcone synthase promoters in petunia are active in pigmented and unpigmented cell types. Plant Cell 2: 379-392 (1990).

Kohler U, Liaud MF, Mendel RR, Cerff R, Hehl R. The maize GapC4 promoter confers anaerobic reporter gene expression and shows homology to the maize anthocyanin regulatory locus C1. Plant Mol. Biol. 29: 1293-1298 (1995).

Kokoska L, Janovska D. Chemistry and pharmacology of Rhaponticum carthamoides: a review. Phytochemistry 70: 842-855 (2009).

Kolb CA, Kaser MA, Kopecky J, Zotz G, Riederer M, Pfundel EE. Effects of natural intensities of visible and ultraviolet radiation on epidermal ultraviolet screening and photosynthesis in grape leaves. Plant Physiol. 127: 863-875 (2001).

Kolb CA, Pfundel EE. Origins of non-linear and dissimilar relationships between epidermal UV absorbance and UV absorbance of extracted phenolics in leaves of grapevine and barley. Plant Cell Environ. 28: 580-590 (2005).

Kondo K, Kurihara M, Miyata N, Suzuki T, Toyoda M. Mechanistic studies of catechins as antioxidants against radical oxidation. Arch. Biochem. Biophys. 362: 79-86 (1999).

Koorbanally C, Sewjee S, Mulholland DA, Crouch NR, Dold A. Homoisoflavanones from Pseudoprospero firmifolium of the monotypic tribe Pseudoprospereae (Hyacinthaceae: Hyacinthoideae). Phytochemistry 68: 2753-2756 (2007).

Kostyuk VA, Kraemer T, Sies H, Schewe T. Myeloperoxidase/nitrite-mediated lipid peroxidation of low- density lipoprotein as modulated by flavonoids. FEBS Lett. 537: 146-150 (2003).

Koysomboon S, van Altena I, Kato S, Chantrapromma K. Antimycobacterial flavonoids from Derris indica. Phytochemistry 67: 1034-1040 (2006).

Krisa S, Teguo PW, Decendit A, Deffieux G, Vercauteren J, Merillon JM. Production of 13C-labelled anthocyanins by Vitis vinifera cell suspension cultures. Phytochemistry 51: 651-656 (1999).

Kristiansen KN, Rohde W. Structure of the Hordeum vulgare gene encoding dihydroflavonol-4-reductase and molecular analysis of ant18 mutants blocked in flavonoid synthesis. Mol. Gen. Genet. 230: 49-59 (1991).

Kroon J, Souer E, de Graaff A, Xue Y, Mol J, Koes R. Cloning and structural analysis of the anthocyanin pigmentation locus Rt of Petunia hybrida: characterization of insertion sequences in two mutant alleles. Plant J. 5: 69-80 (1994).

Kubasek WL, Ausubel FM, Shirley BW. A light-independent developmental mechanism potentiates flavonoid gene expression in Arabidopsis seedlings. Plant Mol. Biol. 37: 217-223 (1998).

Kubasek WL, Shirely BW, McKillop A, Goodman HM, Briggs W, Ausubel FM. Regulation of flavonoid biosynthetic genes in germinating Arabidopsis seedlings. Plant Cell 4: 1229-1236 (1992).

Kubo H, Peeters AJ, Aarts MG, Pereira A, Koornneef M. ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis. Plant Cell 11: 1217-1226 (1999).

Kucera B, Leubner-Metzger G, Wellmann E. Distinct ultraviolet-signaling pathways in bean leaves. DNA damage is associated with beta-1,3-glucanase gene induction, but not with flavonoid formation. Plant Physiol. 133: 1445-1452 (2003).

Kulheim C, Jansson S. What leads to reduced fitness in non-photochemical quenching mutants?. Physiol. Plant. 125: 202-211 (2005).

Kurosawa Y, Takahara H, Shiraiwa M. UDP-glucuronic acid:soyasapogenol glucuronosyltransferase involved in saponin biosynthesis in germinating soybean seeds. Planta 215: 620-629 (2002).

Kutchan TM. A role for intra- and intercellular translocation in natural product biosynthesis. Curr. Opin. Plant Biol. 8: 292-300 (2005).

Kyparissis A, Grammatikopoulos G, Manetas Y. Leaf morphological and physiological adjustments to the spectrally selective shade imposed by anthocyanins in Prunus cerasifera. Tree Physiol. 27: 849-857 (2007).

Kytridis VP, Manetas Y. Mesophyll versus epidermal anthocyanins as potential in vivo antioxidants: evidence linking the putative antioxidant role to the proximity of oxy-radical source. J. Exp. Bot. 57: 2203-2210 (2006).

Laby RJ, Kim D, Gibson SI. The ram1 mutant of Arabidopsis exhibits severely decreased beta-amylase activity. Plant Physiol. 127: 1798-1807 (2001).

Laby RJ, Kincaid MS, Kim D, Gibson SI. The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. Plant J. 23: 587-596 (2000).

Lacombe E, Hawkins S, Van Doorsselaere J, Piquemal J, Goffner D, Poeydomenge O, Boudet AM, Grima-Pettenati J. Cinnamoyl CoA reductase, the first committed enzyme of the lignin branch biosynthetic pathway: cloning, expression and phylogenetic relationships. Plant J. 11: 429-441 (1997).

Laitinen RA, Ainasoja M, Broholm SK, Teeri TH, Elomaa P. Identification of target genes for a MYB-type anthocyanin regulator in Gerbera hybrida. J. Exp. Bot. 59: 3691-3703 (2008).

Lam KC, Ibrahim RK, Behdad B, Dayanandan S. Structure, function, and evolution of plant O-methyltransferases. Genome 50: 1001-1013 (2007).

Landry LG, Chapple CC, Last RL. Arabidopsis mutants lacking phenolic sunscreens exhibit enhanced ultraviolet-B injury and oxidative damage. Plant Physiol. 109: 1159-1166 (1995).

Lanot A, Hodge D, Lim EK, Vaistij FE, Bowles DJ. Redirection of flux through the phenylpropanoid pathway by increased glucosylation of soluble intermediates. Planta 228: 609-616 (2008).

Lapcík O. Isoflavonoids in non-leguminous taxa: a rarity or a rule? Phytochemistry 68: 2909-2916 (2007).

Laplaze L, Gherbi H, Frutz T, Pawlowski K, Franche C, Macheix JJ, Auguy F, Bogusz D, Duhoux E. Flavan-containing cells delimit Frankia-infected compartments in Casuarina glauca nodules. Plant Physiol. 121: 113-122 (1999).

Larkin JC, Walker JD, Bolognesi-Winfield AC, Gray JC, Walker AR. Allele-specific interactions between ttg and gl1 during trichome development in Arabidopsis thaliana. Genetics 151: 1591-1604 (1999).

Larsen ES, Alfenito MR, Briggs WR, Walbot V. A carnation anthocyanin mutant is complemented by the glutathione S-transferases encoded by maize Bz2 and petunia An9. Plant Cell Rep. 21: 900-904 (2003).

Larson R, Bussard JB, Coe EH Jr. Gene-dependent flavonoid 3'-hydroxylation in maize. Biochem. Genet. 24: 615-624 (1986).

Laxmi A, Paul LK, Raychaudhuri A, Peters JL, Khurana JP. Arabidopsis cytokinin-resistant mutant, cnr1, displays altered auxin responses and sugar sensitivity. Plant Mol. Biol. 62: 409-425 (2006).

Lea US, Slimestad R, Smedvig P, Lillo C. Nitrogen deficiency enhances expression of specific MYB and bHLH transcription factors and accumulation of end products in the flavonoid pathway. Planta 225: 1245-1253 (2007).

Lee CJ, Lee JH, Seok JH, Hur GM, Park Js J, Bae S, Lim JH, Park YC. Effects of betaine, coumarin and flavonoids on mucin release from cultured hamster tracheal surface epithelial cells. Phytother. Res. 18: 301-305 (2004).

Leitner-Dagan Y, Ovadis M, Shklarman E, Elad Y, Rav David D, Vainstein A. Expression and functional analyses of the plastid lipid-associated protein CHRC suggest its role in chromoplastogenesis and stress. Plant Physiol. 142: 233-244 (2006).

Lejczak B, Boduszek B, Kafarski P, Forlani G, Wojtasek H, Wieczorek P. Mode of action of herbicidal derivatives of aminomethylenebisphosphonic acid. 1. Physiologic activity and inhibition of anthocyanin biosynthesis. J. Plant Growth Regul. 15: 109-113 (1996).

Leonard E, Yan Y, Fowler ZL, Li Z, Lim CG, Lim KH, Koffas MA. Strain improvement of recombinant Escherichia coli for efficient production of plant flavonoids. Mol. Pharm. 5: 257-265 (2008).

Leonard E, Yan Y, Koffas MA. Functional expression of a P450 flavonoid hydroxylase for the biosynthesis of plant-specific hydroxylated flavonols in Escherichia coli. Metab. Eng. 8: 172-181 (2006).

Leonova NO, Tytova LV, Tantsiurenko OV, Antypchuk AF. Glutamate dehydrogenase activity of Bradyrhizobium japonicum in the presence of phytoregulators. Mikrobiol. Z. 68: 20-26 (2006).

Lepiniec L, Debeaujon I, Routaboul JM, Baudry A, Pourcel L, Nesi N, Caboche M. Genetics and biochemistry of seed flavonoids. Annu. Rev. Plant Biol. 57: 405-430 (2006).

Lepisto A, Kangasjarvi S, Luomala EM, Brader G, Sipari N, Keranen M, Keinanen M, Rintamaki E. Chloroplast NADPH-thioredoxin reductase interacts with photoperiodic development in Arabidopsis. Plant Physiol. 149: 1261-1276 (2009).

Leser C, Treutter D. Effects of nitrogen supply on growth, contents of phenolic compounds and pathogen (scab) resistance of apple trees. Physiol. Plant. 123: 49-56 (2005).

Lesnick ML, Chandler VL. Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters. Plant Physiol. 117: 437-445 (1998).

Li FX, Jin ZP, Zhao DX, Cheng LQ, Fu CX, Ma F. Overexpression of the Saussurea medusa chalcone isomerase gene in S. involucrata hairy root cultures enhances their biosynthesis of apigenin. Phytochemistry 67: 553-560 (2006).

Li H, Flachowsky H, Fischer TC, Hanke MV, Forkmann G, Treutter D, Schwab W, Hoffmann T, Szankowski I. Maize Lc transcription factor enhances biosynthesis of anthocyanins, distinct proanthocyanidins and phenylpropanoids in apple (Malus domestica Borkh.). Planta 226: 1243-1254 (2007).

Li J, Ou-Lee TM, Raba R, Amundson RG, Last RL. Arabidopsis flavonoid mutants are hypersensitive to UV-B irradiation. Plant Cell 5: 171-179 (1993).

Li JB, Hashimoto F, Shimizu K, Sakata Y. Anthocyanins from red flowers of Camellia cultivar 'Dalicha' Phytochemistry 69: 3166-3171 (2008).

Li L, Li X, Shi C, Deng Z, Fu H, Proksch P, Lin W. Pongamone A-E, five flavonoids from the stems of a mangrove plant, Pongamia pinnata. Phytochemistry 67: 1347-1352 (2006).

Li L, Popko JL, Zhang XH, Osakabe K, Tsai CJ, Joshi CP, Chiang VL. A novel multifunctional O-methyltransferase implicated in a dual methylation pathway associated with lignin biosynthesis in loblolly pine. Proc. Natl. Acad. Sci. U.S.A. 94: 5461-5466 (1997).

Li N, Shao L, Zhang CF, Zhang M. Two new flavonoid alkaloids from Senecio argunensis. J. Asian Nat. Prod. Res. 10: 1143-1146 (2008).

Li P, Castagnoli S, Cheng L. Red 'Anjou' pear has a higher photoprotective capacity than green 'Anjou'. Physiol. Plant. 134: 486-498 (2008).

Li SM, Yang XW, Shen YH, Feng L, Wang YH, Zeng HW, Liu XH, Tian JM, Shi YN, Long CL, Zhang WD. Chemical constituents of Aeschynanthus bracteatus and their weak anti-inflammatory activities. Phytochemistry 69: 2200-2204 (2008).

Liakopoulos G, Nikolopoulos D, Klouvatou A, Vekkos KA, Manetas Y, Karabourniotis G. The photoprotective role of epidermal anthocyanins and surface pubescence in young leaves of grapevine (Vitis vinifera). Ann. Bot. (Lond.) 98: 257-265 (2006).

Liang XW, Dron M, Cramer CL, Dixon RA, Lamb CJ. Differential regulation of phenylalanine ammonia-lyase genes during plant development and by environmental cues. J. Biol. Chem. 264: 14486-14492 (1989).

Lillo C, Lea US, Ruoff P. Nutrient depletion as a key factor for manipulating gene expression and product formation in different branches of the flavonoid pathway. Plant Cell Environ. 31: 587-601 (2008).

Lin R, Wang H. Two homologous ATP-binding cassette transporter proteins, AtMDR1 and AtPGP1, regulate Arabidopsis photomorphogenesis and root development by mediating polar auxin transport. Plant Physiol. 138: 949-964 (2005).

Lin YZ, Chen HY, Kao R, Chang SP, Chang SJ, Lai EM. Proteomic analysis of rice defense response induced by probenazole. Phytochemistry 69: 715-728 (2008).

Lindoo SJ, Caldwell MM. Ultraviolet-B radiation-induced inhibition of leaf expansion and promotion of anthocyanin production: lack of involvement of the low irradiance phytochrome system. Plant Physiol. 61: 278-282 (1978).

Linn F, Heidmann I, Saedler H, Meyer P. Epigenetic changes in the expression of the maize A1 gene in Petunia hybrida: role of numbers of integrated gene copies and state of methylation. Mol. Gen. Genet. 222: 329-336 (1990).

Lister C, Jackson D, Martin C. Transposon-induced inversion in Antirrhinum modifies nivea gene expression to give a novel flower color pattern under the control of cycloidearadialis. Plant Cell 5: 1541-1553 (1993).

Liu CJ, Blount JW, Steele CL, Dixon RA. Bottlenecks for metabolic engineering of isoflavone glycoconjugates in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 99: 14578-14583 (2002).

Liu CJ, Dixon RA. Elicitor-induced association of isoflavone O-methyltransferase with endomembranes prevents the formation and 7-O-methylation of daidzein during isoflavonoid phytoalexin biosynthesis. Plant Cell 13: 2643-2658 (2001).

Liu CJ, Huhman D, Sumner LW, Dixon RA. Regiospecific hydroxylation of isoflavones by cytochrome p450 81E enzymes from Medicago truncatula. Plant J. 36: 471-484 (2003).

Liu R, Hu Y, Li J, Lin Z. Production of soybean isoflavone genistein in non-legume plants via genetically modified secondary metabolism pathway. Metab. Eng. 9: 1-7 (2007).

Liu Y, Alleman M, Wessler SR. A Ds insertion alters the nuclear localization of the maize transcriptional activator R. Proc. Natl. Acad. Sci. U.S.A. 93: 7816-7820 (1996).

Liu-Gitz L, Britz SJ, Wergin WP. Blue light inhibits stomatal development in soybean isolines containing kaempferol-3-O-2G-glycosyl-gentiobioside (K9), a unique flavonoid glycoside. Plant Cell Environ. 23: 883-891 (2000).

Lloyd AM, Walbot V, Davis RW. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Science 258: 1773-1775 (1992).

Lloyd JC, Zakhleniuk OV. Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3. J. Exp. Bot. 55: 1221-1230 (2004).

Lloyd JC, Zakhleniuk OV, Raines CA. Identification of mutants in phosphorus metabolism. Ann. Appl. Biol. 138: 111-115 (2001).

Lo Piero AR, Puglisi I, Petrone G. Gene characterization, analysis of expression and in vitro synthesis of dihydroflavonol 4-reductase from [Citrus sinensis (L.) Osbeck]. Phytochemistry 67: 684-695 (2006).

Lo SC, Nicholson RL. Reduction of light-induced anthocyanin accumulation in inoculated sorghum mesocotyls. Implications for a compensatory role in the defense response. Plant Physiol. 116: 979-989 (1998).

Logemann E, Tavernaro A, Schulz W, Somssich IE, Hahlbrock K. UV light selectively coinduces supply pathways from primary metabolism and flavonoid secondary product formation in parsley. Proc. Natl. Acad. Sci. U.S.A. 97: 1903-1907 (2000).

Lohmann A, Schottler MA, Brehelin C, Kessler F, Bock R, Cahoon EB, Dormann P. Deficiency in phylloquinone (vitamin K1) methylation affects prenyl quinone distribution, photosystem I abundance and anthocyanin accumulation in the arabidopsis AtmenG mutant. J. Biol. Chem. 281: 40461-40472 (2006).

Long M, Millar DJ, Kimura Y, Donovan G, Rees J, Fraser PD, Bramley PM, Bolwell GP. Metabolite profiling of carotenoid and phenolic pathways in mutant and transgenic lines of tomato: identification of a high antioxidant fruit line. Phytochemistry 67: 1750-1757 (2006).

Loyall L, Uchida K, Braun S, Furuya M, Frohnmeyer H. Glutathione and a UV light-induced glutathione S-transferase are involved in signaling to chalcone synthase in cell cultures. Plant Cell 12: 1939-1950 (2000).

Lozovaya VV, Lygin AV, Zernova OV, Ulanov AV, Li S, Hartman GL, Widholm JM. Modification of phenolic metabolism in soybean hairy roots through down regulation of chalcone synthase or isoflavone synthase. Planta 225: 665-679 (2007).

Lu YP, Li ZS, Drozdowicz YM, Hortensteiner S, Martinoia E, Rea PA. AtMRP2, an Arabidopsis ATP binding cassette transporter able to transport glutathione S-conjugates and chlorophyll catabolites. Functional comparisons with atmrp1 functional comparisons with AtMRP1. Plant Cell 10: 267-282 (1998).

Lu YP, Li ZS, Rea PA. AtMRP1 gene of Arabidopsis encodes a glutathione S-conjugate pump: isolation and functional definition of a plant ATP-binding cassette transporter gene. Proc. Natl. Acad. Sci. U.S.A. 94: 8243-8248 (1997).

Luccioni LG, Oliverio KA, Yanovsky MJ, Boccalandro HE, Casal JJ. Brassinosteroid mutants uncover fine tuning of phytochrome signaling. Plant Physiol. 128: 173-181 (2002).

Ludwig SR, Habera LF, Dellaporta SL, Wessler SR. Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A. 86: 7092-7096 (1989).

Lukacin R, Groning I, Schiltz E, Britsch L, Matern U. Purification of recombinant flavanone 3beta-hydroxylase from petunia hybrida and assignment of the primary site of proteolytic degradation. Arch. Biochem. Biophys. 375: 364-370 (2000).

Lunde C, Zygadlo A, Simonsen HT, Nielsen PL, Blennow A, Haldrup A. Sulfur starvation in rice: the effect on photosynthesis, carbohydrate metabolism, and oxidative stress protective pathways. Physiol. Plant. 134: 508-521 (2008).

Luo J, Nishiyama Y, Fuell C, Taguchi G, Elliott K, Hill L, Tanaka Y, Kitayama M, Yamazaki M, Bailey P, Parr A, Michael AJ, Saito K, Martin C. Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana. Plant J. 50: 678-695 (2007).

Macchiavelli RE, Brelles-Marino G. Nod factor-treated Medicago truncatula roots and seeds show an increased number of nodules when inoculated with a limiting population of Sinorhizobium meliloti. J. Exp. Bot. 55: 2635-2640 (2004).

Machado MB, Lopes LM. Tetraflavonoid and biflavonoids from Aristolochia ridicula. Phytochemistry 69: 3095-3102 (2008).

Mackova Z, Koblovska R, Lapcik O. Distribution of isoflavonoids in non-leguminous taxa - an update. Phytochemistry 67: 849-855 (2006).

Maeda H, Song W, Sage TL, Dellapenna D. Tocopherols play a crucial role in low-temperature adaptation and phloem loading in Arabidopsis. Plant Cell 18: 2710-2732 (2006).

Mahroug S, Courdavault V, Thiersault M, St-Pierre B, Burlat V. Epidermis is a pivotal site of at least four secondary metabolic pathways in Catharanthus roseus aerial organs. Planta 223: 1191-1200 (2006).

Manning K. Isolation of a set of ripening-related genes from strawberry: their identification and possible relationship to fruit quality traits. Planta 205: 622-631 (1998).

Manning WJ, V Tiedemann A. Climate change: potential effects of increased atmospheric carbon dioxide (CO2), ozone (O3), and ultraviolet-B (UV-B) radiation on plant diseases. Environ. Pollut. 88: 219-245 (1995).

Marder M, Viola H, Wasowski C, Fernandez S, Medina JH, Paladini AC. 6-Methylapigenin and hesperidin: new Valeriana flavonoids with activity on the CNS. Pharmacol. Biochem. Behav. 75: 537-545 (2003).

Mariani C, Braca A, Vitalini S, De Tommasi N, Visioli F, Fico G. Flavonoid characterization and in vitro antioxidant activity of Aconitum anthora L. (Ranunculaceae). Phytochemistry 69: 1220-1226 (2008).

Marin PD, Grayer RJ, Grujic-Jovanovic S, Kite GC, Veitch NC. Glycosides of tricetin methyl ethers as chemosystematic markers in Stachys subgenus Betonica. Phytochemistry 65: 1247-1253 (2004).

Marinova K, Kleinschmidt K, Weissenbock G, Klein M. Flavonoid biosynthesis in barley primary leaves requires the presence of the vacuole and controls the activity of vacuolar flavonoid transport. Plant Physiol. 144: 432-444 (2007).

Markham KR. Novel anthocyanins produced in petals of genetically transformed lisianthus. Phytochemistry 42: 1035-1038 (1996).

Markham KR, Ofman DJ. Lisianthus flavonoid pigments and factors influencing their expression in flower colour. Phytochemistry 34: 679-685 (1993).

Marles MA, Gruber MY, Scoles GJ, Muir AD. Pigmentation in the developing seed coat and seedling leaves of Brassica carinata is controlled at the dihydroflavonol reductase locus. Phytochemistry 62: 663-672 (2003).

Marrs KA. The functions and regulation of glutathione S-transferases in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 127-158 (1996).

Marrs KA, Alfenito MR, Lloyd AM, Walbot V. A glutathione S-transferase involved in vacuolar transfer encoded by the maize gene Bronze-2. Nature 375: 397-400 (1995).

Marrs KA, Walbot V. Expression and RNA splicing of the maize glutathione S-transferase Bronze2 gene is regulated by cadmium and other stresses. Plant Physiol. 113: 93-102 (1997).

Martens S, Mithofer A. Flavones and flavone synthases. Phytochemistry 66: 2399-2407 (2005).

Martens S, Teeri T, Forkmann G. Heterologous expression of dihydroflavonol 4-reductases from various plants. FEBS Lett. 531: 453-458 (2002).

Martin C, Prescott A, Mackay S, Bartlett J, Vrijlandt E. Control of anthocyanin biosynthesis in flowers of Antirrhinum majus. Plant J. 1: 37-49 (1991).

Martin T, Oswald O, Graham IA. Arabidopsis seedling growth, storage lipid mobilization, and photosynthetic gene expression are regulated by carbon:nitrogen availability. Plant Physiol. 128: 472-481 (2002).

Mathesius U, Schlaman HR, Spaink HP, Of Sautter C, Rolfe BG, Djordjevic MA. Auxin transport inhibition precedes root nodule formation in white clover roots and is regulated by flavonoids and derivatives of chitin oligosaccharides. Plant J. 14: 23-34 (1998).

Mathews H, Clendennen SK, Caldwell CG, Liu XL, Connors K, Matheis N, Schuster DK, Menasco DJ, Wagoner W, Lightner J, Wagner DR. Activation tagging in tomato identifies a transcriptional regulator of anthocyanin biosynthesis, modification, and transport. Plant Cell 15: 1689-1703 (2003).

Matsuda F, Yonekura-Sakakibara K, Niida R, Kuromori T, Shinozaki K, Saito K. MS/MS spectral tag (MS2T)-based annotation of non-targeted profile of plant secondary metabolites. Plant J. 57: 555-577 (2009).

Matsui K, Umemura Y, Ohme-Takagi M. AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis. Plant J. 55: 954-967 (2008).

Matsumoto N, Hirano T, Iwasaki T, Yamamoto N. Functional analysis and intracellular localization of rice cryptochromes. Plant Physiol. 133: 1494-1503 (2003).

Matus JT, Loyola R, Vega A, Pena-Neira A, Bordeu E, Arce-Johnson P, Alcalde JA. Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera. J. Exp. Bot. 60: 853-867 (2009).

Maurya R, Singh R, Deepak M, Handa SS, Yadav PP, Mishra PK. Constituents of Pterocarpus marsupium: an ayurvedic crude drug. Phytochemistry 65: 915-920 (2004).

Mayer R. Five biflavonoids from Calycopteris floribunda (Combretaceae). Phytochemistry 65: 593-601 (2004).

Mazza G. Anthocyanins in grapes and grape products. Crit. Rev. Food Sci. Nutr. 35: 341-371 (1995).

Mazza G, Miniati E. Anthocyanins in fruits, vegetables, and grains. CRC Press, Boca Raton, FL (1993).

McCormick S. Pigment synthesis in maize aleurone from precursors fed to anthocyanin mutants. Biochem. Genet. 16: 777-785 (1978).

McDougall GJ, Fyffe S, Dobson P, Stewart D. Anthocyanins from red cabbage - stability to simulated gastrointestinal digestion. Phytochemistry 68: 1285-1294 (2007).

McInnis S, Clemens S, Kermode AR. The ornamental variety, Japanese striped corn, contains high anthocyanin levels and PAL specific activity: establishing the potential for development of an oral therapeutic. Plant Cell Rep. 28: 503-515 (2009).

McKhann HI, Hirsch AM. Isolation of chalcone synthase and chalcone isomerase cDNAs from alfalfa (Medicago sativa L.): highest transcript levels occur in young roots and root tips. Plant Mol. Biol. 24: 767-777 (1994).

McLaughlin M, Walbot V. Cloning of a mutable bz2 allele of maize by transposon tagging and differential hybridization. Genetics 117: 771-776 (1987).

Mehrtens F, Kranz H, Bednarek P, Weisshaar B. The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis. Plant Physiol. 138: 1083-1096 (2005).

Mellway RD, Tran LT, Prouse MB, Campbell MM, Constabel CP. The wound-, pathogen-, and ultraviolet B-responsive MYB134 gene encodes an R2R3 MYB transcription factor that regulates proanthocyanidin synthesis in poplar. Plant Physiol. 150: 924-941 (2009).

Memelink J. The use of genetics to dissect plant secondary pathways. Curr. Opin. Plant Biol. 8: 230-235 (2005).

Memelink J, Menkw FL, van der Fits L, Kijne JW. Chapter 6. Transcriptional Regulators to Modify Secondary Metabolism. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 111-125 (2000).

Meng Y, Krzysiak AJ, Durako MJ, Kunzelman JI, Wright JL. Flavones and flavone glycosides from Halophila johnsonii. Phytochemistry 69: 2603-2608 (2008).

Merzlyak MN, Chivkunova OB, Solovchenko AE, Naqvi KR. Light absorption by anthocyanins in juvenile, stressed, and senescing leaves. J. Exp. Bot. 59: 3903-3911 (2008).

Merzlyak MN, Melo TB, Naqvi KR. Effect of anthocyanins, carotenoids, and flavonols on chlorophyll fluorescence excitation spectra in apple fruit: signature analysis, assessment, modelling, and relevance to photoprotection. J. Exp. Bot. 59: 349-359 (2008).

Messner B, Thulke O, Schaffner AR. Arabidopsis glucosyltransferases with activities toward both endogenous and xenobiotic substrates. Planta 217: 138-146 (2003).

Meyer K, Cusumano JC, Somerville C, Chapple CC. Ferulate-5-hydroxylase from Arabidopsis thaliana defines a new family of cytochrome P450-dependent monooxygenases. Proc. Natl. Acad. Sci. U.S.A. 93: 6869-6874 (1996).

Meyer P, Heidmann I, Forkmann G, Saedler H. A new petunia flower colour generated by transformation of a mutant with a maize gene. Nature 330: 677-678 (1987).

Middleton EM, Teramura AH. The role of flavonol glycosides and carotenoids in protecting soybean from ultraviolet-B damage. Plant Physiol. 103: 741-752 (1993).

Millar DJ, Long M, Donovan G, Fraser PD, Boudet AM, Danoun S, Bramley PM, Bolwell GP. Introduction of sense constructs of cinnamate 4-hydroxylase (CYP73A24) in transgenic tomato plants shows opposite effects on flux into stem lignin and fruit flavonoids. Phytochemistry 68: 1497-1509 (2007).

Miller G, Suzuki N, Rizhsky L, Hegie A, Koussevitzky S, Mittler R. Double mutants deficient in cytosolic and thylakoid ascorbate peroxidase reveal a complex mode of interaction between reactive oxygen species, plant development, and response to abiotic stresses. Plant Physiol. 144: 1777-1785 (2007).

Miller KD, Strommer J, Taylor LP. Conservation in divergent solanaceous species of the unique gene structure and enzyme activity of a gametophytically-expressed flavonol 3-O-galactosyltransferase. Plant Mol. Biol. 48: 233-242 (2002).

Miller KJ, Hadley JA, Gustine DL. Cyclic [beta]-1,6-1,3-glucans of Bradyrhizobium japonicum USDA 110 elicit isoflavonoid production in the soybean (Glycine max) host. Plant Physiol. 104: 917-923 (1994).

Mita S, Hirano H, Nakamura K. Negative regulation in the expression of a sugar-inducible gene in Arabidopsis thaliana. A recessive mutation causing enhanced expression of a gene for beta-amylase. Plant Physiol. 114: 575-582 (1997).

Mita S, Murano N, Akaike M, Nakamura K. Mutants of Arabidopsis thaliana with pleiotropic effects on the expression of the gene for beta-amylase and on the accumulation of anthocyanin that are inducible by sugars. Plant J. 11: 841-851 (1997).

Miura H, Kitamura Y, Ikenaga T, Mizobe K, Shimizu T, Nakamura M, Kato Y, Yamada T, Maitani T, Goda Y. Anthocyanin production of Glehnia littoralis callus cultures. Phytochemistry 48: 279-283 (1998).

Miyake K, Ito T, Senda M, Ishikawa R, Harada T, Niizeki M, Akada S. Isolation of a subfamily of genes for R2R3-MYB transcription factors showing up-regulated expression under nitrogen nutrient-limited conditions. Plant Mol. Biol. 53: 237-245 (2003).

Miziak P, Zon J, Amrhein N, Gancarz R. Inhibitors of phenylalanine ammonia-lyase: substituted derivatives of 2-aminoindane-2-phosphonic acid and 1-aminobenzylphosphonic acid. Phytochemistry 68: 407-415 (2007).

Moalem-Beno D, Tamari G, Leitner-Dagan Y, Borochov A, Weiss D. Sugar-dependent gibberellin-induced chalcone synthase gene expression in petunia corollas. Plant Physiol. 113: 419-424 (1997).

Moco S, Bino RJ, Vorst O, Verhoeven HA, de Groot J, van Beek TA, Vervoort J, de Vos CH. A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiol. 141: 1205-1218 (2006).

Moco S, Capanoglu E, Tikunov Y, Bino RJ, Boyacioglu D, Hall RD, Vervoort J, De Vos RC. Tissue specialization at the metabolite level is perceived during the development of tomato fruit. J. Exp. Bot. 58: 4131-4146 (2007).

Modolo LV, Blount JW, Achnine L, Naoumkina MA, Wang X, Dixon RA. A functional genomics approach to (iso)flavonoid glycosylation in the model legume Medicago truncatula. Plant Mol. Biol. 64: 499-518 (2007).

Modolo LV, Cunha FQ, Braga MR, Salgado I. Nitric oxide synthase-mediated phytoalexin accumulation in soybean cotyledons in response to the Diaporthe phaseolorum f. sp. meridionalis elicitor. Plant Physiol. 130: 1288-1297 (2002).

Mohn T, Plitzko I, Hamburger M. A comprehensive metabolite profiling of Isatis tinctoria leaf extracts. Phytochemistry 70: 924-934 (2009).

Mol J, Cornish E, Mason J, Koes R. Novel coloured flowers. Curr. Opin. Biotechnol. 10: 198-201 (1999).

Mol J, Grotewold E, Koes R. How genes paint flowers and seeds. Trends Plant Sci. 3: 212-217 (1998).

Momonoi K, Yoshida K, Mano S, Takahashi H, Nakamori C, Shoji K, Nitta A, Nishimura M. A vacuolar iron transporter in tulip, TgVit1, is responsible for blue coloration in petal cells through iron accumulation. Plant J. 59: 437-447 (2009).

Montgomery BL, Franklin KA, Terry MJ, Thomas B, Jackson SD, Crepeau MW, Lagarias JC. Biliverdin reductase-induced phytochrome chromophore deficiency in transgenic tobacco. Plant Physiol. 125: 266-277 (2001).

Montgomery BL, Yeh KC, Crepeau MW, Lagarias JC. Modification of distinct aspects of photomorphogenesis via targeted expression of mammalian biliverdin reductase in transgenic Arabidopsis plants. Plant Physiol. 121: 629-640 (1999).

Moreno-Risueno MA, Gonzalez N, Diaz I, Parcy F, Carbonero P, Vicente-Carbajosa J. FUSCA3 from barley unveils a common transcriptional regulation of seed-specific genes between cereals and Arabidopsis. Plant J. 53: 882-894 (2008).

Mori M, Kondo T, Toki K, Yoshida K. Structure of anthocyanin from the blue petals of Phacelia campanularia and its blue flower color development. Phytochemistry 67: 622-629 (2006).

Mori M, Kondo T, Yoshida K. Cyanosalvianin, a supramolecular blue metalloanthocyanin, from petals of Salvia uliginosa. Phytochemistry 69: 3151-3158 (2008).

Mori M, Yoshida K, Ishigaki Y, Matsunaga T, Nikaido O, Kameda K, Kondo T. UV-B protective effect of a polyacylated anthocyanin, HBA, in flower petals of the blue morning glory, Ipomoea tricolor cv. Heavenly Blue. Bioorg. Med. Chem. 13: 2015-2020 (2005).

Mori T, Sakurai M, Sakuta M. Effects of conditioned medium on activities of PAL, CHS, DAHP synthase (DS-Co and DS-Mn) and anthocyanin production in suspension cultures of Fragaria ananassa. Plant Sci. 160: 355-360 (2001).

Morita Y, Hoshino A, Kikuchi Y, Okuhara H, Ono E, Tanaka Y, Fukui Y, Saito N, Nitasaka E, Noguchi H, Iida S. Japanese morning glory dusky mutants displaying reddish-brown or purplish-gray flowers are deficient in a novel glycosylation enzyme for anthocyanin biosynthesis, UDP-glucose:anthocyanidin 3-O-glucoside-2''-O-glucosyltransferase, due to 4-bp insertions .. Plant J. 42: 353-363 (2005).

Morreel K, Goeminne G, Storme V, Sterck L, Ralph J, Coppieters W, Breyne P, Steenackers M, Georges M, Messens E, Boerjan W. Genetical metabolomics of flavonoid biosynthesis in Populus: a case study. Plant J. 47: 224-237 (2006).

Morris PF, Bone E, Tyler BM. Chemotropic and contact responses of Phytophthora sojae hyphae to soybean isoflavonoids and artificial substrates. Plant Physiol. 117: 1171-1178 (1998).

Moscovici S, Moalem-Beno D, Weiss D. Leaf-mediated light responses in petunia flowers. Plant Physiol. 110: 1275-1282 (1996).

Moyano E, Martinez-Garcia JF, Martin C. Apparent redundancy in myb gene function provides gearing for the control of flavonoid biosynthesis in antirrhinum flowers. Plant Cell 8: 1519-1532 (1996).

Moyano E, Portero-Robles I, Medina-Escobar N, Valpuesta V, Munoz-Blanco J, Caballero JL. A fruit-specific putative dihydroflavonol 4-reductase gene is differentially expressed in strawberry during the ripening process. Plant Physiol. 117: 711-716 (1998).

Mshvildadze V, Legault J, Lavoie S, Gauthier C, Pichette A. Anticancer diarylheptanoid glycosides from the inner bark of Betula papyrifera. Phytochemistry 68: 2531-2536 (2007).

Mueller LA, Goodman CD, Silady RA, Walbot V. AN9, a petunia glutathione S-transferase required for anthocyanin sequestration, is a flavonoid-binding protein. Plant Physiol. 123: 1561-1570 (2000).

Muir SR, Collins GJ, Robinson S, Hughes S, Bovy A, De Vos CHR, van Tunen AJ, Verhoeyen ME. Overexpression of petunia chalcone isomerase in tomato results in fruit containing increased levels of flavonols. Nat. Biotechnol. 19: 470-474 (2001).

Muller R, Nilsson L, Krintel C, Nielsen TH. Gene expression during recovery from phosphate starvation in roots and shoots of Arabidopsis thaliana. Physiol. Plant. 122: 233-243 (2004).

Munne-Bosch S. The role of alpha-tocopherol in plant stress tolerance. J. Plant Physiol. 162: 743-748 (2005).

Munne-Bosch S, Weiler EW, Alegre L, Muller M, Duchting P, Falk J. alpha-Tocopherol may influence cellular signaling by modulating jasmonic acid levels in plants. Planta 225: 681-691 (2007).

Murakami S, Takahara H, Shiraiwa M. Purification and characterization of three neutral extracellular isoperoxidases from rye leaves. Phytochemistry 68: 777-784 (2007).

Murata J, Roepke J, Gordon H, De Luca V. The leaf epidermome of Catharanthus roseus reveals its biochemical specialization. Plant Cell 20: 524-542 (2008).

Murphy A, Peer WA, Taiz L. Regulation of auxin transport by aminopeptidases and endogenous flavonoids. Planta 211: 315-324 (2000).

Mustilli AC, Fenzi F, Ciliento R, Alfano F, Bowler C. Phenotype of the tomato high pigment-2 mutant is caused by a mutation in the tomato homolog of DEETIOLATED1. Plant Cell 11: 145-157 (1999).

Mutanyatta J, Matapa BG, Shushu DD, Abegaz BM. Homoisoflavonoids and xanthones from the tubers of wild and in vitro regenerated Ledebouria graminifolia and cytotoxic activities of some of the homoisoflavonoids. Phytochemistry 62: 797-804 (2003).

Muzitano MF, Tinoco LW, Guette C, Kaiser CR, Rossi-Bergmann B, Costa SS. The antileishmanial activity assessment of unusual flavonoids from Kalanchoe pinnata. Phytochemistry 67: 2071-2077 (2006).

Nagashima S, Inagaki R, Kubo A, Hirotani M, Yoshikawa T. cDNA cloning and expression of isoflavonoid-specific glucosyltransferase from Glycyrrhiza echinata cell-suspension cultures. Planta 218: 456-459 (2004).

Naithani R, Huma LC, Holland LE, Shukla D, McCormick DL, Mehta RG, Moriarty RM. Antiviral activity of phytochemicals: a comprehensive review. Mini Rev. Med. Chem. 8: 1106-1133 (2008).

Nakajima J, Tanaka Y, Yamazaki M, Saito K. Reaction mechanism from leucoanthocyanidin to anthocyanidin 3-glucoside, a key reaction for coloring in anthocyanin biosynthesis. J. Biol. Chem. 276: 25797-25803 (2001).

Nakatsuka T, Haruta KS, Pitaksutheepong C, Abe Y, Kakizaki Y, Yamamoto K, Shimada N, Yamamura S, Nishihara M. Identification and characterization of R2R3-MYB and bHLH transcription factors regulating anthocyanin biosynthesis in gentian flowers. Plant Cell Physiol. 49: 1818-1829 (2008).

Nakatsuka T, Nishihara M, Mishiba K, Yamamura S. Two different mutations are involved in the formation of white-flowered gentian plants. Plant Sci. 169: 949-958 (2005).

Nakatsuka T, Sato K, Takahashi H, Yamamura S, Nishihara M. Cloning and characterization of the UDP-glucose:anthocyanin 5-O-glucosyltransferase gene from blue-flowered gentian. J. Exp. Bot. 59: 1241-1252 (2008).

Naoumkina MA, He X, Dixon RA. Elicitor-induced transcription factors for metabolic reprogramming of secondary metabolism in Medicago truncatula. BMC Plant Biol. 8: 132 (2008).

Napoli C, Lemieux C, Jorgensen R. Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans. Plant Cell 2: 279-289 (1990).

Narasimhan K, Basheer C, Bajic VB, Swarup S. Enhancement of plant-microbe interactions using a rhizosphere metabolomics-driven approach and its application in the removal of polychlorinated biphenyls. Plant Physiol. 132: 146-153 (2003).

Narvaez-Mastache JM, Novillo F, Delgado G. Antioxidant aryl-prenylcoumarin, flavan-3-ols and flavonoids from Eysenhardtia subcoriacea. Phytochemistry 69: 451-456 (2008).

Nash J, Luehrsen KR, Walbot V. Bronze-2 gene of maize: reconstruction of a wild-type allele and analysis of transcription and splicing. Plant Cell 2: 1039-1049 (1990).

Nawrot R, Kalinowski A, Gozdzicka-Jozefiak A. Proteomic analysis of Chelidonium majus milky sap using two-dimensional gel electrophoresis and tandem mass spectrometry. Phytochemistry 68: 1612-1622 (2007).

Neff MM, Chory J. Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development. Plant Physiol. 118: 27-35 (1998).

Neill SO, Gould KS, Kilmartin PA, Mitchell KA, Markham KR. Antioxidant activities of red versus green leaves in Elatostema rugosum. Plant Cell Environ. 25: 539-547 (2002).

Nesi N, Debeaujon I, Jond C, Stewart AJ, Jenkins GI, Caboche M, Lepiniec L. The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat. Plant Cell 14: 2463-2479 (2002).

Nesi N, Jond C, Debeaujon I, Caboche M, Lepiniec L. The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed. Plant Cell 13: 2099-2114 (2001).

Ngo Mbing J, Enguehard-Gueiffier C, Atchade AD, Allouchi H, Gangoue-Pieboji J, Mbafor JT, Tih RG, Pothier J, Pegnyemb DE, Gueiffier A. Two biflavonoids from Ouratea nigroviolacea. Phytochemistry 67: 2666-2670 (2006).

Nguyen AT, Fontaine J, Malonne H, Duez P. Homoisoflavanones from Disporopsis aspera. Phytochemistry 67: 2159-2163 (2006).

Nicotra AB, Hofmann M, Siebke K, Ball MC. Spatial patterning of pigmentation in evergreen leaves in response to freezing stress. Plant Cell Environ. 26: 1893-1904 (2003).

Niemi K, Julkunen-Tiitto R, Haggman H, Sarjala T. Suillus variegatus causes significant changes in the content of individual polyamines and flavonoids in Scots pine seedlings during mycorrhiza formation in vitro. J. Exp. Bot. 58: 391-401 (2007).

Nikiforova V, Freitag J, Kempa S, Adamik M, Hesse H, Hoefgen R. Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity. Plant J. 33: 633-650 (2003).

Nikiforova VJ, Daub CO, Hesse H, Willmitzer L, Hoefgen R. Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J. Exp. Bot. 56: 1887-1896 (2005).

Nilsson L, Muller R, Nielsen TH. Increased expression of the MYB-related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana. Plant Cell Environ. 30: 1499-1512 (2007).

Nishihara M, Nakatsuka T, Yamamura S. Flavonoid components and flower color change in transgenic tobacco plants by suppression of chalcone isomerase gene. FEBS Lett. 579: 6074-6078 (2005).

Noda K, Glover BJ, Linstead P, Martin C. Flower colour intensity depends on specialized cell shape controlled by a Myb-related transcription factor. Nature 369: 661-664 (1994).

Noda N, Kanno Y, Kato N, Kazuma K, Suzuki M. Regulation of gene expression involved in flavonol and anthocyanin biosynthesis during petal development in lisianthus (Eustoma grandiflorum). Physiol. Plant. 122: 305-313 (2004).

Noda Y, Kaneyuki T, Igarashi K, Mori A, Packer L. Antioxidant activity of nasunin, an anthocyanin in eggplant. Res. Commun. Mol. Pathol. Pharmacol. 102: 175-187 (1998).

Noguchi A, Fukui Y, Iuchi-Okada A, Kakutani S, Satake H, Iwashita T, Nakao M, Umezawa T, Ono E. Sequential glucosylation of a furofuran lignan, (+)-sesaminol, by Sesamum indicum UGT71A9 and UGT94D1 glucosyltransferases. Plant J. 54: 415-427 (2008).

Noguchi A, Horikawa M, Fukui Y, Fukuchi-Mizutani M, Iuchi-Okada A, Ishiguro M, Kiso Y, Nakayama T, Ono E. Local differentiation of sugar donor specificity of flavonoid glycosyltransferase in Lamiales. Plant Cell 21: 1556-1572 (2009).

Noh B, Spalding EP. Anion channels and the stimulation of anthocyanin accumulation by blue light in Arabidopsis seedlings. Plant Physiol. 116: 503-509 (1998).

Nookandeh A, Frank N, Steiner F, Ellinger R, Schneider B, Gerhauser C, Becker H. Xanthohumol metabolites in faeces of rats. Phytochemistry 65: 561-570 (2004).

Novak K, Chovanec P, Skrdleta V, Kropacova M, Lisa L, Nemcova M. Effect of exogenous flavonoids on nodulation of pea (Pisum sativum L.). J. Exp. Bot. 53: 1735-1745 (2002).

Novak K, Lisa L, Skrdleta V. Rhizobial nod gene-inducing activity in pea nodulation mutants: dissociation of nodulation and flavonoid response. Physiol. Plant. 120: 546-555 (2004).

Nozue M, Yamada K, Nakamura T, Kubo H, Kondo M, Nishimura M. Expression of a vacuolar protein (VP24) in anthocyanin-producing cells of sweet potato in suspension culture. Plant Physiol. 115: 1065-1072 (1997).

O'Callaghan KJ, Dixon RA, Cocking EC. Arabidopsis thaliana: a model for studies of colonization by non-pathogenic and plant-growth-promoting rhizobacteria. Aust. J. Plant Physiol. 28: 975-982 (2001).

O'Neill SD, Tong Y, Sporlein B, Forkmann G, Yoder JI. Molecular genetic analysis of chalcone synthase in Lycopersicon esculentum and an anthocyanin-deficient mutant. Mol. Gen. Genet. 224: 279-288 (1990).

Oguchi Y, Masada S, Kondo T, Terasaka K, Mizukami H. Purification and characterization of UDP-glucose:curcumin glucoside 1,6-glucosyltransferase from Catharanthus roseus cell suspension cultures. Plant Cell Physiol. 48: 1635-1643 (2007).

Oikawa A, Nakamura Y, Ogura T, Kimura A, Suzuki H, Sakurai N, Shinbo Y, Shibata D, Kanaya S, Ohta D. Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies. Plant Physiol. 142: 398-413 (2006).

Olschlager C, Regos I, Zeller FJ, Treutter D. Identification of galloylated propelargonidins and procyanidins in buckwheat grain and quantification of rutin and flavanols from homostylous hybrids originating from F. esculentum x F. homotropicum. Phytochemistry 69: 1389-1397 (2008).

Olsen KM, Slimestad R, Lea US, Brede C, Lovdal T, Ruoff P, Verheul M, Lillo C. Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies. Plant Cell Environ. 32: 286-299 (2009).

Olsen O, Wang X, von Wettstein D. Sodium azide mutagenesis: preferential generation of A.T-->G.C transitions in the barley Ant18 gene. Proc. Natl. Acad. Sci. U.S.A. 90: 8043-8047 (1993).

Ono E, Fukuchi-Mizutani M, Nakamura N, Fukui Y, Yonekura-Sakakibara K, Yamaguchi M, Nakayama T, Tanaka T, Kusumi T, Tanaka Y. Yellow flowers generated by expression of the aurone biosynthetic pathway. Proc. Natl. Acad. Sci. U.S.A. 103: 11075-11080 (2006).

Ono E, Hatayama M, Isono Y, Sato T, Watanabe R, Yonekura-Sakakibara K, Fukuchi-Mizutani M, Tanaka Y, Kusumi T, Nishino T, Nakayama T. Localization of a flavonoid biosynthetic polyphenol oxidase in vacuoles. Plant J. 45: 133-143 (2006).

Oravecz A, Baumann A, Mate Z, Brzezinska A, Molinier J, Oakeley EJ, Adam E, Schafer E, Nagy F, Ulm R. CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. Plant Cell 18: 1975-1990 (2006).

Ozeki Y, Sakano K, Komamine A, Tanaka Y, Noguchi H, Sankawa U, Suzuki T. Purification and some properties of chalcone synthase from a carrot suspension culture induced for anthocyanin synthesis and preparation of its specific antiserum. J. Biochem. (Tokyo) 98: 9-17 (1985).

Page JE, Towers GH. Anthocyanins protect light-sensitive thiarubrine phototoxins. Planta 215: 478-484 (2002).

Pairoba CF, Walbot V. Post-transcriptional regulation of expression of the Bronze2 gene of Zea mays L. Plant Mol. Biol. 53: 75-86 (2003).

Palapol Y, Ketsa S, Lin-Wang K, Ferguson IB, Allan AC. A MYB transcription factor regulates anthocyanin biosynthesis in mangosteen (Garcinia mangostana L.) fruit during ripening. Planta 229: 1323-1334 (2009).

Palumbo MJ, Putz FE, Talcott ST. Nitrogen fertilizer and gender effects on the secondary metabolism of yaupon, a caffeine-containing North American holly. Oecologia 151: 1-9 (2007).

Paolacci AR, D'Ovidio R, Marabottini R, Nali C, Lorenzini G, Abenavoli MR, Badiani M. Ozone induces a differential accumulation of phenyalanine ammonia-lyase, chalcone synthase and chalcone isomerase RNA transcripts in sensitive and resistant bean cultivars. Aust. J. Plant Physiol. 28: 425-428 (2001).

Paolocci F, Bovone T, Tosti N, Arcioni S, Damiani F. Light and an exogenous transcription factor qualitatively and quantitatively affect the biosynthetic pathway of condensed tannins in Lotus corniculatus leaves. J. Exp. Bot. 56: 1093-1103 (2005).

Park JS, Kim JB, Cho KJ, Cheon CI, Sung MK, Choung MG, Roh KH. Arabidopsis R2R3-MYB transcription factor AtMYB60 functions as a transcriptional repressor of anthocyanin biosynthesis in lettuce (Lactuca sativa). Plant Cell Rep. 27: 985-994 (2008).

Park KI, Choi JD, Hoshino A, Morita Y, Iida S. An intragenic tandem duplication in a transcriptional regulatory gene for anthocyanin biosynthesis confers pale-colored flowers and seeds with fine spots in Ipomoea tricolor. Plant J. 38: 840-849 (2004).

Park KI, Ishikawa N, Morita Y, Choi JD, Hoshino A, Iida S. A bHLH regulatory gene in the common morning glory, Ipomoea purpurea, controls anthocyanin biosynthesis in flowers, proanthocyanidin and phytomelanin pigmentation in seeds, and seed trichome formation. Plant J. 49: 641-654 (2007).

Park WJ, Schafer A, Prinsen E, van Onckelen H, Kang BG, Hertel R. Auxin-induced elongation of short maize coleoptile segments is supported by 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one. Planta 213: 92-100 (2001).

Patterson GI, Harris LJ, Walbot V, Chandler VL. Genetic analysis of B-Peru, a regulatory gene in maize. Genetics 127: 205-220 (1991).

Patterson GI, Thorpe CJ, Chandler VL. Paramutation, an allelic interaction, is associated with a stable and heritable reduction of transcription of the maize b regulatory gene. Genetics 135: 881-894 (1993).

Paz-Ares J, Ghosal D, Saedler H. Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J. 9: 315-321 (1990).

Pearse IS, Heath KD, Cheeseman JM. Biochemical and ecological characterization of two peroxidase isoenzymes from the mangrove, Rhizophora mangle. Plant Cell Environ. 28: 612-622 (2005).

Pedras MS, Zheng QA, Gadagi RS, Rimmer SR. Phytoalexins and polar metabolites from the oilseeds canola and rapeseed: differential metabolic responses to the biotroph Albugo candida and to abiotic stress. Phytochemistry 69: 894-910 (2008).

Peel GJ, Pang Y, Modolo LV, Dixon RA. The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago. Plant J. 59: 136-149 (2009).

Peer WA, Bandyopadhyay A, Blakeslee JJ, Makam SN, Chen RJ, Masson PH, Murphy AS. Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. Plant Cell 16: 1898-1911 (2004).

Peer WA, Brown DE, Tague BW, Muday GK, Taiz L, Murphy AS. Flavonoid accumulation patterns of transparent testa mutants of Arabidopsis. Plant Physiol. 126: 536-548 (2001).

Pelletier MK, Burbulis IE, Winkel-Shirley B. Disruption of specific flavonoid genes enhances the accumulation of flavonoid enzymes and end-products in Arabidopsis seedlings. Plant Mol. Biol. 40: 45-54 (1999).

Pelletier MK, Murrell JR, Shirley BW. Characterization of flavonol synthase and leucoanthocyanidin dioxygenase genes in Arabidopsis. Further evidence for differential regulation of "early" and "late" genes. Plant Physiol. 113: 1437-1445 (1997).

Pelletier MK, Shirley BW. Analysis of flavanone 3-hydroxylase in Arabidopsis seedlings. Coordinate regulation with chalcone synthase and chalcone isomerase. Plant Physiol. 111: 339-345 (1996).

Peng M, Bi YM, Zhu T, Rothstein SJ. Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. Plant Mol. Biol. 65: 775-797 (2007).

Peng M, Hudson D, Schofield A, Tsao R, Yang R, Gu H, Bi YM, Rothstein SJ. Adaptation of Arabidopsis to nitrogen limitation involves induction of anthocyanin synthesis which is controlled by the NLA gene. J. Exp. Bot. 59: 2933-2944 (2008).

Percy JD, Philip R, Vodkin LO. A defective seed coat pattern (Net) is correlated with the post-transcriptional abundance of soluble proline-rich cell wall proteins. Plant Mol. Biol. 40: 603-613 (1999).

Persans MW, Schuler MA. Differential induction of cytochrome P450-mediated triasulfuron metabolism by naphthalic anhydride and triasulfuron. Plant Physiol. 109: 1483-1490 (1995).

Petroni K, Cominelli E, Consonni G, Gusmaroli G, Gavazzi G, Tonelli C. The developmental expression of the maize regulatory gene Hopi determines germination-dependent anthocyanin accumulation. Genetics 155: 323-336 (2000).

Petrucco S, Bolchi A, Foroni C, Percudani R, Rossi GL, Ottonello S. A maize gene encoding an NADPH binding enzyme highly homologous to isoflavone reductases is activated in response to sulfur starvation. Plant Cell 8: 69-80 (1996).

Philbin CS, Schwartz SJ. Resolution of diastereomeric flavonoid (1S)-(-)-camphanic acid esters via reversed-phase HPLC. Phytochemistry 68: 1206-1211 (2007).

Phillips DA, Wery J, Joseph CM, Jones D, Teuber LR. Release of flavonoids and betaines from seeds of seven Medicago species. Crop Sci. 35: 805-808 (1995).

Phippen WB, Simon JE. Anthocyanin inheritance and instability in purple basil (Ocimum basilicum L.). J. Hered. 91: 289-296 (2000).

Piao HL, Lim JH, Kim SJ, Cheong GW, Hwang I. Constitutive over-expression of AtGSK1 induces NaCl stress responses in the absence of NaCl stress and results in enhanced NaCl tolerance in Arabidopsis. Plant J. 27: 305-314 (2001).

Piazza P, Procissi A, Jenkins GI, Tonelli C. Members of the c1/pl1 regulatory gene family mediate the response of maize aleurone and mesocotyl to different light qualities and cytokinins. Plant Physiol. 128: 1077-1086 (2002).

Pietrini F, Iannelli MA, Massacci A. Anthocyanin accumulation in the illuminated surface of maize leaves enhances protection from photo-inhibitory risks at low temperature, without further limitation to photosynthesis. Plant Cell Environ. 25: 1251-1259 (2002).

Pillai BV, Swarup S. Elucidation of the flavonoid catabolism pathway in Pseudomonas putida PML2 by comparative metabolic profiling. Appl. Environ. Microbiol. 68: 143-151 (2002).

Pilu R, Piazza P, Petroni K, Ronchi A, Martin C, Tonelli C. pl-bol3, a complex allele of the anthocyanin regulatory pl1 locus that arose in a naturally occurring maize population. Plant J. 36: 510-521 (2003).

Pinar Sahin F, Ezer N, Calis I I. Three acylated flavone glycosides from Sideritis ozturkii Aytac & Aksoy. Phytochemistry 65: 2095-2099 (2004).

Pislewska M, Bednarek P, Stobiecki M, Zielinska M, Wojtaszek P. Cell wall-associated isoflavonoids and ss-glucosidase activity in Lupinus albus plants responding to environmental stimuli. Plant Cell Environ. 25: 29-40 (2002).

Pollak PE, Vogt T, Mo Y, Taylor LP. Chalcone synthase and flavonol accumulation in stigmas and anthers of petunia hybrida. Plant Physiol. 102: 925-932 (1993).

Ponce MA, Scervino JM, Erra-Balsells R, Ocampo JA, Godeas AM. Flavonoids from shoots and roots of Trifolium repens (white clover) grown in presence or absence of the arbuscular mycorrhizal fungus Glomus intraradices. Phytochemistry 65: 1925-1930 (2004).

Pooma W, Gersos C, Grotewold E. Transposon insertions in the promoter of the Zea mays a1 gene differentially affect transcription by the myb factors P and C1. Genetics 161: 793-801 (2002).

Porter BW, Zhu YJ, Webb DT, Christopher DA. Novel thigmomorphogenetic responses in Carica papaya: touch decreases anthocyanin levels and stimulates petiole cork outgrowths. Ann. Bot. (Lond.) 103: 847-858 (2009).

Pourcel L, Routaboul JM, Cheynier V, Lepiniec L, Debeaujon I. Flavonoid oxidation in plants: from biochemical properties to physiological functions. Trends Plant Sci. 12: 29-36 (2007).

Pourcel L, Routaboul JM, Kerhoas L, Caboche M, Lepiniec L, Debeaujon I. TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat. Plant Cell 17: 2966-2980 (2005).

Prawat H, Mahidol C, Ruchirawat S, Prawat U, Tuntiwachwut-tikul P, Tooptakong U, Taylor WC, Pakawatchai C, Skeleton BW, White AH. Cyanogenic and non-cyanogenic glycosides from Manihot esculenta. Phytochemistry 40: 1167-1173 (1995).

Prescott AG, John P. Dioxygenases: molecular structure and role in plant metabolism. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 245-271 (1996).

Procissi A, Piazza P, Tonelli C. A maize r1 gene is regulated post-transcriptionally by differential splicing of its leader. Plant Mol. Biol. 49: 239-248 (2002).

Prols F, Meyer P. The methylation patterns of chromosomal integration regions influence gene activity of transferred DNA in Petunia hybrida. Plant J. 2: 465-475 (1992).

Pueppke SG, Bolanos-Vasquez MC, Werner D, Bec-Ferte MP, Prome JC, Krishnan HB. Release of flavonoids by the soybean cultivars McCall and Peking and their perception as signals by the nitrogen-fixing symbiont Sinorhizobium fredii. Plant Physiol. 117: 599-606 (1998).

Purugganan MD, Wessler SR. Molecular evolution of the plant R regulatory gene family. Genetics 138: 849-854 (1994).

Quattrocchio F, Verweij W, Kroon A, Spelt C, Mol J, Koes R. PH4 of petunia is an R2R3 MYB protein that activates vacuolar acidification through interactions with basic-helix-loop-helix transcription factors of the anthocyanin pathway. Plant Cell 18: 1274-1291 (2006).

Quattrocchio F, Wing J, van der Woude K, Souer E, de Vetten N, Mol J, Koes R. Molecular analysis of the anthocyanin2 gene of Petunia and its role in the evolution of flower color. Plant Cell 11: 1433-1444 (1999).

Quattrocchio F, Wing JF, Leppen H, Mol J, Koes RE. Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell 5: 1497-1512 (1993).

Quattrocchio F, Wing JF, van der Woude K, Mol JN, Koes R. Analysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J. 13: 475-488 (1998).

Radicella JP, Brown D, Tolar LA, Chandler VL. Allelic diversity of the maize B regulatory gene: different leader and promoter sequences of two B alleles determine distinct tissue specificities of anthocyanin production. Genes Dev. 6: 2152-2164 (1992).

Ralston L, Subramanian S, Matsuno M, Yu O. Partial reconstruction of flavonoid and isoflavonoid biosynthesis in yeast using soybean type I and type II chalcone isomerases. Plant Physiol. 137: 1375-1388 (2005).

Ramsay NA, Walker AR, Mooney M, Gray JC. Two basic-helix-loop-helix genes (MYC-146 and GL3) from Arabidopsis can activate anthocyanin biosynthesis in a white-flowered Matthiola incana mutant. Plant Mol. Biol. 52: 679-688 (2003).

Rao MV, Paliyath G, Ormrod DP. Ultraviolet-B- and ozone-induced biochemical changes in antioxidant enzymes of Arabidopsis thaliana. Plant Physiol. 110: 125-136 (1996).

Rausher MD, Miller RE, Tiffin P. Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway. Mol. Biol. Evol. 16: 266-274 (1999).

Ray H, Yu M, Auser P, Blahut-Beatty L, McKersie B, Bowley S, Westcott N, Coulman B, Lloyd A, Gruber MY. Expression of anthocyanins and proanthocyanidins after transformation of alfalfa with maize Lc. Plant Physiol. 132: 1448-1463 (2003).

Reddy AR, Scheffler B, Madhuri G, Srivastava MN, Kumar A, Sathyanarayanan PV, Nair S, Mohan M. Chalcone synthase in rice (Oryza sativa L.): detection of the CHS protein in seedlings and molecular mapping of the chs locus. Plant Mol. Biol. 32: 735-743 (1996).

Reddy MK, Reddy MV, Gunasekar D, Murthy MM, Caux C, Bodo B. A flavone and an unusual 23-carbon terpenoid from Andrographis paniculata. Phytochemistry 62: 1271-1275 (2003).

Reddy NP, Reddy BA, Gunasekar D, Blond A, Bodo B, Murthy MM. Flavonoids from Limnophila indica. Phytochemistry 68: 636-639 (2007).

Reddy VS, Goud KV, Sharma R, Reddy AR. Ultraviolet-B-responsive anthocyanin production in a rice cultivar is associated with a specific phase of phenylalanine ammonia lyase biosynthesis. Plant Physiol. 105: 1059-1066 (1994).

Reifenrath K, Muller C. Species-specific and leaf-age dependent effects of ultraviolet radiation on two Brassicaceae. Phytochemistry 68: 875-885 (2007).

Ren DM, Guo HF, Yu WT, Wang SQ, Ji M, Lou HX. Stereochemistry of flavonoidal alkaloids from Dracocephalum rupestre. Phytochemistry 69: 1425-1433 (2008).

Renard CM, Dupont N, Guillermin P. Concentrations and characteristics of procyanidins and other phenolics in apples during fruit growth. Phytochemistry 68: 1128-1138 (2007).

Reymond M, Svistoonoff S, Loudet O, Nussaume L, Desnos T. Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana. Plant Cell Environ. 29: 115-125 (2006).

Rice-Evans CA, Miller NJ, Bolwell PG, Bramley PM, Pridham JB. The relative antioxidant activities of plant-derived polyphenolic flavonoids. Free Radic. Res. 22: 375-383 (1995).

Riely BK, Ane JM, Penmetsa RV, Cook DR. Genetic and genomic analysis in model legumes bring Nod-factor signaling to center stage. Curr. Opin. Plant Biol. 7: 408-413 (2004).

Ringli C, Bigler L, Kuhn BM, Leiber RM, Diet A, Santelia D, Frey B, Pollmann S, Klein M. The modified flavonol glycosylation profile in the Arabidopsis rol1 mutants results in alterations in plant growth and cell shape formation. Plant Cell 20: 1470-1481 (2008).

Riviere C, Hong VN, Pieters L, Dejaegher B, Heyden YV, Van MC, Quetin-Leclercq J. Polyphenols isolated from antiradical extracts of Mallotus metcalfianus. Phytochemistry 70: 86-94 (2009).

Robbins MP, Paolocci F, Hughes JW, Turchetti V, Allison G, Arcioni S, Morris P, Damiani F. Sn, a maize bHLH gene, modulates anthocyanin and condensed tannin pathways in Lotus corniculatus. J. Exp. Bot. 54: 239-248 (2003).

Roesler KR, Shorrosh BS, Ohlrogge JB. Structure and expression of an Arabidopsis acetyl-coenzyme A carboxylase gene. Plant Physiol. 105: 611-617 (1994).

Ronchi A, Petroni K, Tonelli C. The reduced expression of endogenous duplications (REED) in the maize R gene family is mediated by DNA methylation. EMBO J. 14: 5318-5328 (1995).

Rosati C, Cadic A, Duron M, Ingouff M, Simoneau P. Molecular characterization of the anthocyanidin synthase gene in Forsythia x intermedia reveals organ-specific expression during flower development. Plant Sci. 149: 73-79 (1999).

Rosati C, Cadic A, Duron M, Renou JP, Simoneau P. Molecular cloning and expression analysis of dihydroflavonol 4-reductase gene in flower organs of Forsythia x intermedia. Plant Mol. Biol. 35: 303-311 (1997).

Rose A, Glassgen WE, Hopp W, Seitz HU. Purification and characterization of glycosyltransferases involved in anthocyanin biosynthesis in cell-suspension cultures of Daucus carota L. Planta 198: 397-403 (1996).

Ross HA, McDougall GJ, Stewart D. Antiproliferative activity is predominantly associated with ellagitannins in raspberry extracts. Phytochemistry 68: 218-228 (2007).

Roth BA, Goff SA, Klein TM, Fromm ME. C1- and R-dependent expression of the maize Bz1 gene requires sequences with homology to mammalian myb and myc binding sites. Plant Cell 3: 317-325 (1991).

Routaboul JM, Kerhoas L, Debeaujon I, Pourcel L, Caboche M, Einhorn J, Lepiniec L. Flavonoid diversity and biosynthesis in seed of Arabidopsis thaliana. Planta 224: 96-107 (2006).

Roychoudhury A, Basu S, Sarkar SN, Sengupta DN. Comparative physiological and molecular responses of a common aromatic indica rice cultivar to high salinity with non-aromatic indica rice cultivars. Plant Cell Rep. 27: 1395-1410 (2008).

Rozema J, Bjorn LO, Bornman JF, Gaberscik A, Hader DP, Trost T, Germ M, Klisch M, Groniger A, Sinha RP, Lebert M, He YY, Buffoni-Hall R, de Bakker NV, van de Staaij J, Meijkamp BB. The role of UV-B radiation in aquatic and terrestrial ecosystems--an experimental and functional analysis of the evolution of UV-absorbing compounds. J. Photochem. Photobiol. B. 66: 2-12 (2002).

Ryder TB, Hedrick SA, Bell JN, Liang XW, Clouse SD, Lamb CJ. Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris. Mol. Gen. Genet. 210: 219-233 (1987).

Sablowski RW, Moyano E, Culianez-Macia FA, Schuch W, Martin C, Bevan M. A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes. EMBO J. 13: 128-137 (1994).

Saga Kitamura RO, Romoff P, Young MC, Kato MJ, Lago JH. Chromenes from Peperomia serpens (Sw.) Loudon (Piperaceae). Phytochemistry 67: 2398-2402 (2006).

Sainz MB, Grotewold E, Chandler VL. Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins. Plant Cell 9: 611-625 (1997).

Saito K, Kobayashi M, Gong Z, Tanaka Y, Yamazaki M. Direct evidence for anthocyanidin synthase as a 2-oxoglutarate-dependent oxygenase: molecular cloning and functional expression of cDNA from a red forma of Perilla frutescens. Plant J. 17: 181-189 (1999).

Saito K, Yamazaki M. Biochemistry and molecular biology of the late-stage of biosynthesis of anthocyanin: lessons from Perilla frutescens as a model plant. New Phytol. 155: 9-23 (2002).

Saito N, Tatsuzawa F, Suenaga E, Toki K, Shinoda K, Shigihara A, Honda T. Tetra-acylated cyanidin 3-sophoroside-5-glucosides from the flowers of Iberis umbellata L. (Cruciferae). Phytochemistry 69: 3139-3150 (2008).

Saito N, Tatsuzawa F, Yoda K, Yokoi M, Kasahara K, Iida S, Shigihara A, Honda T. Acylated cyanidin glycosides in the violet-blue flowers of Ipomoea purpurea. Phytochemistry 40: 1283-1289 (1995).

Saito N, Tatsuzawa F, Yokoi M, Kasahara K, Iida S, Shigihara A, Honda T. Acylated pelargonidin glycosides in red-purple flowers of Ipomoea purpurea. Phytochemistry 43: 1365-1370 (1996).

Sakaguchi Y, Ozaki Y, Miyajima I, Yamaguchi M, Fukui Y, Iwasa K, Motoki S, Suzuki T, Okubo H. Major anthocyanins from purple asparagus (Asparagus officinalis). Phytochemistry 69: 1763-1766 (2008).

Salib JY, Michael HN. Cytotoxic phenylethanol glycosides from Psidium guaijava seeds. Phytochemistry 65: 2091-2093 (2004).

Samappito S, Page J, Schmidt J, De-Eknamkul W, Kutchan TM. Molecular characterization of root-specific chalcone synthases from Cassia alata. Planta 216: 64-71 (2002).

Sanchez-Calderon L, Lopez-Bucio J, Chacon-Lopez A, Gutierrez-Ortega A, Hernandez-Abreu E, Herrera-Estrella L. Characterization of low phosphorus insensitive mutants reveals a crosstalk between low phosphorus-induced determinate root development and the activation of genes involved in the adaptation of Arabidopsis to phosphorus deficiency. Plant Physiol. 140: 879-889 (2006).

Sasaki K, Takahashi T. A flavonoid from Brassica rapa flower as the UV-absorbing nectar guide. Phytochemistry 61: 339-343 (2002).

Saslowsky D, Winkel-Shirley B. Localization of flavonoid enzymes in Arabidopsis roots. Plant J. 27: 37-48 (2001).

Saslowsky DE, Dana CD, Winkel-Shirley B. An allelic series for the chalcone synthase locus in Arabidopsis. Gene 255: 127-138 (2000).

Sawada S, Suzuki H, Ichimaida F, Yamaguchi MA, Iwashita T, Fukui Y, Hemmi H, Nishino T, Nakayama T. UDP-glucuronic acid:anthocyanin glucuronosyltransferase from red daisy (Bellis perennis) flowers. Enzymology and phylogenetics of a novel glucuronosyltransferase involved in flower pigment biosynthesis. J. Biol. Chem. 280: 899-906 (2005).

Sawada Y, Kinoshita K, Akashi T, Aoki T, Ayabe S. Key amino acid residues required for aryl migration catalysed by the cytochrome P450 2-hydroxyisoflavanone synthase. Plant J. 31: 555-564 (2002).

Scarpari LM, Meinhardt LW, Mazzafera P, Pomella AW, Schiavinato MA, Cascardo JC, Pereira GA. Biochemical changes during the development of witches' broom: the most important disease of cocoa in Brazil caused by Crinipellis perniciosa. J. Exp. Bot. 56: 865-877 (2005).

Schalk M, Batard Y, Seyer A, Nedelkina S, Durst F, Werck-Reichhart D. Design of fluorescent substrates and potent inhibitors of CYP73As, P450s that catalyze 4-hydroxylation of cinnamic acid in higher plants. Biochemistry 36: 15253-15261 (1997).

Schiefelbein JW, Furtek DB, Dooner HK, Nelson OE Jr. Two mutations in a maize bronze-1 allele caused by transposable elements of the Ac-Ds family alter the quantity and quality of the gene product. Genetics 120: 767-777 (1988).

Schijlen EG, de Vos CH, Martens S, Jonker HH, Rosin FM, Molthoff JW, Tikunov YM, Angenent GC, van Tunen AJ, Bovy AG. RNA interference silencing of chalcone synthase, the first step in the flavonoid biosynthesis pathway, leads to parthenocarpic tomato fruits. Plant Physiol. 144: 1520-1530 (2007).

Schijlen EG, Ric de Vos CH, van Tunen AJ, Bovy AG. Modification of flavonoid biosynthesis in crop plants. Phytochemistry 65: 2631-2648 (2004).

Schliemann W, Schneider B, Wray V, Schmidt J, Nimtz M, Porzel A, Bohm H. Flavonols and an indole alkaloid skeleton bearing identical acylated glycosidic groups from yellow petals of Papaver nudicaule. Phytochemistry 67: 191-201 (2006).

Schmid J, Doerner PW, Clouse SD, Dixon RA, Lamb CJ. Developmental and environmental regulation of a bean chalcone synthase promoter in transgenic tobacco. Plant Cell 2: 619-631 (1990).

Schmitz-Hoerner R, Weissenbock G. Contribution of phenolic compounds to the UV-B screening capacity of developing barley primary leaves in relation to DNA damage and repair under elevated UV-B levels. Phytochemistry 64: 243-255 (2003).

Schoenbohm C, Martens S, Eder C, Forkmann G, Weisshaar B. Identification of the Arabidopsis thaliana flavonoid 3'-hydroxylase gene and functional expression of the encoded P450 enzyme. Biol. Chem. 381: 749-753 (2000).

Schroder G, Wehinger E, Lukacin R, Wellmann F, Seefelder W, Schwab W, Schroder J. Flavonoid methylation: a novel 4'-O-methyltransferase from Catharanthus roseus, and evidence that partially methylated flavanones are substrates of four different flavonoid dioxygenases. Phytochemistry 65: 1085-1094 (2004).

Schussler MD, Alexandersson E, Bienert GP, Kichey T, Laursen KH, Johanson U, Kjellbom P, Schjoerring JK, Jahn TP. The effects of loss of TIP1;1 and TIP1;2 aquaporins in Arabidopsis thaliana. Plant J. 56: 756-767 (2008).

Schuurink RC, Haring MA, Clark DG. Regulation of volatile benzenoid biosynthesis in petunia flowers. Trends Plant Sci. 11: 20-25 (2006).

Schwalm K, Aloni R, Langhans M, Heller W, Stich S, Ullrich CI. Flavonoid-related regulation of auxin accumulation in Agrobacterium tumefaciens-induced plant tumors. Planta 218: 163-178 (2003).

Schwinn K, Venail J, Shang Y, Mackay S, Alm V, Butelli E, Oyama R, Bailey P, Davies K, Martin C. A small family of MYB-regulatory genes controls floral pigmentation intensity and patterning in the genus Antirrhinum. Plant Cell 18: 831-851 (2006).

Seitz C, Ameres S, Forkmann G. Identification of the molecular basis for the functional difference between flavonoid 3'-hydroxylase and flavonoid 3',5'-hydroxylase. FEBS Lett. 581: 3429-3434 (2007).

Seitz C, Eder C, Deiml B, Kellner S, Martens S, Forkmann G. Cloning, functional identification and sequence analysis of flavonoid 3'-hydroxylase and flavonoid 3',5'-hydroxylase cDNAs reveals independent evolution of flavonoid 3',5'-hydroxylase in the Asteraceae family. Plant Mol. Biol. 61: 365-381 (2006).

Seitz C, Vitten M, Steinbach P, Hartl S, Hirsche J, Rathje W, Treutter D, Forkmann G. Redirection of anthocyanin synthesis in Osteospermum hybrida by a two-enzyme manipulation strategy. Phytochemistry 68: 824-833 (2007).

Selinger DA, Chandler VL. A mutation in the pale aleurone color1 gene identifies a novel regulator of the maize anthocyanin pathway. Plant Cell 11: 5-14 (1999).

Sengupta B, Banerjee A, Sengupta PK. Investigations on the binding and antioxidant properties of the plant flavonoid fisetin in model biomembranes. FEBS Lett. 570: 77-81 (2004).

Serna L, Martin C. Trichomes: different regulatory networks lead to convergent structures. Trends Plant Sci. 11: 274-280 (2006).

Seshime Y, Juvvadi PR, Fujii I, Kitamoto K. Genomic evidences for the existence of a phenylpropanoid metabolic pathway in Aspergillus oryzae. Biochem. Biophys. Res. Commun. 337: 747-751 (2005).

Sevenier R, van der Meer IM, Bino R, Koops AJ. Increased production of nutriments by genetically engineered crops. J. Am. Coll. Nutr. 21: 199S-204S (2002).

Seyoum A, Asres K, El-Fiky FK. Structure-radical scavenging activity relationships of flavonoids. Phytochemistry 67: 2058-2070 (2006).

Sgherri C, Stevanovic B, Navari-Izzo F. Role of phenolics in the antioxidative status of the resurrection plant Ramonda serbica during dehydration and rehydration. Physiol. Plant. 122: 478-485 (2004).

Shao H, He X, Achnine L, Blount JW, Dixon RA, Wang X. Crystal structures of a multifunctional triterpene/flavonoid glycosyltransferase from Medicago truncatula. Plant Cell 17: 3141-3154 (2005).

Shao L, Li Y, Pan A, Cheng Z, Chen M. Molecular cloning, sequencing, and expression in Escherichia coli of the chalcone synthase gene. Chin. J. Biotechnol. 11: 131-135 (1995).

Sharma SB, Dixon RA. Metabolic engineering of proanthocyanidins by ectopic expression of transcription factors in Arabidopsis thaliana. Plant J. 44: 62-75 (2005).

Shaw LJ, Morris P, Hooker JE. Perception and modification of plant flavonoid signals by rhizosphere microorganisms. Environ. Microbiol. 8: 1867-1880 (2006).

Shen P, Guo BL, Gong Y, Hong DY, Hong Y, Yong EL. Taxonomic, genetic, chemical and estrogenic characteristics of Epimedium species. Phytochemistry 68: 1448-1458 (2007).

Shibuya K, Yamada T, Suzuki T, Shimizu K, Ichimura K. InPSR26, a putative membrane protein, regulates programmed cell death during petal senescence in Ipomoea nil. Plant Physiol. 149: 816-824 (2009).

Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C. Functional characterization of key structural genes in rice flavonoid biosynthesis. Planta 228: 1043-1054 (2008).

Shimada A, Kimura Y. Influence of glyphosate on flower morphogenesis and pigmentation in Petunia hybrida. Z. Naturforsch. [C.] 61: 578-582 (2006).

Shimada N, Aoki T, Sato S, Nakamura Y, Tabata S, Ayabe S. A cluster of genes encodes the two types of chalcone isomerase involved in the biosynthesis of general flavonoids and legume-specific 5-deoxy(iso)flavonoids in Lotus japonicus. Plant Physiol. 131: 941-951 (2003).

Shimada N, Sasaki R, Sato S, Kaneko T, Tabata S, Aoki T, Ayabe S. A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genome. J. Exp. Bot. 56: 2573-2585 (2005).

Shimada S, Inoue YT, Sakuta M. Anthocyanidin synthase in non-anthocyanin-producing Caryophyllales species. Plant J. 44: 950-959 (2005).

Shimada Y, Nakano-Shimada R, Ohbayashi M, Okinaka Y, Kiyokawa S, Kikuchi Y. Expression of chimeric P450 genes encoding flavonoid-3', 5'-hydroxylase in transgenic tobacco and petunia plants. FEBS Lett. 461: 241-245 (1999).

Shimada Y, Ohbayashi M, Nakano-Shimada R, Okinaka Y, Kiyokawa S, Kikuchi Y. Genetic engineering of the anthocyanin biosynthetic pathway with flavonoid-3',5'-hydroxylase: specific switching of the pathway in petunia. Plant Cell Rep. 20: 456-462 (2001).

Shimamura M, Akashi T, Sakurai N, Suzuki H, Saito K, Shibata D, Ayabe S, Aoki T. 2-Hydroxyisoflavanone dehydratase is a critical determinant of isoflavone productivity in hairy root cultures of Lotus japonicus. Plant Cell Physiol. 48: 1652-1657 (2007).

Shin J, Park E, Choi G. PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis. Plant J. 49: 981-994 (2007).

Shiono M, Matsugaki N, Takeda K. Phytochemistry: structure of the blue cornflower pigment. Nature 436: 791 (2005).

Shirley BW, Kubasek WL, Storz G, Bruggemann E, Koornneef M, Ausubel FM, Goodman HM. Analysis of Arabidopsis mutants deficient in flavonoid biosynthesis. Plant J. 8: 659-671 (1995).

Shoji T, Winz R, Iwase T, Nakajima K, Yamada Y, Hashimoto T. Expression patterns of two tobacco isoflavone reductase-like genes and their possible roles in secondary metabolism in tobacco. Plant Mol. Biol. 50: 427-440 (2002).

Shorrosh BS, Roesler KR, Shintani D, van de Loo FJ, Ohlrogge JB. Structural analysis, plastid localization, and expression of the biotin carboxylase subunit of acetyl-coenzyme A carboxylase from tobacco. Plant Physiol. 108: 805-812 (1995).

Sidorenko L, Li X, Tagliani L, Bowen B, Peterson T. Characterization of the regulatory elements of the maize P-rr gene by transient expression assays. Plant Mol. Biol. 39: 11-19 (1999).

Simmons CR, Fridlender M, Navarro PA, Yalpani N. A maize defense-inducible gene is a major facilitator superfamily member related to bacterial multidrug resistance efflux antiporters. Plant Mol. Biol. 52: 433-446 (2003).

Singer T, Gierl A, Peterson PA. Three new dominant C1 suppressor alleles in Zea mays. Genet. Res. 71: 127-132 (1998).

Sircar D, Mitra A. Accumulation of p-hydroxybenzoic acid in hairy roots of Daucus carota 2: confirming biosynthetic steps through feeding of inhibitors and precursors. J. Plant Physiol. 166: 1370-1380 (2009).

Slavikova S, Ufaz S, Avin-Wittenberg T, Levanony H, Galili G. An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses. J. Exp. Bot. 59: 4029-4043 (2008).

Smith AP, Nourizadeh SD, Peer WA, Xu J, Bandyopadhyay A, Murphy AS, Goldsbrough PB. Arabidopsis AtGSTF2 is regulated by ethylene and auxin, and encodes a glutathione S-transferase that interacts with flavonoids. Plant J. 36: 433-442 (2003).

Soh MS, Hong SH, Hanzawa H, Furuya M, Nam HG. Genetic identification of FIN2, a far red light-specific signaling component of Arabidopsis thaliana. Plant J. 16: 411-419 (1998).

Solfanelli C, Poggi A, Loreti E, Alpi A, Perata P. Sucrose-specific induction of the anthocyanin biosynthetic pathway in Arabidopsis thaliana. Plant Physiol. 140: 637-646 (2006).

Solovchenko A, Schmitz-Eiberger M. Significance of skin flavonoids for UV-B-protection in apple fruits. J. Exp. Bot. 54: 1977-1984 (2003).

Sompornpailin K, Makita Y, Yamazaki M, Saito K. A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol. Biol. 50: 485-495 (2002).

Sonbol FM, Fornale S, Capellades M, Encina A, Tourino S, Torres JL, Rovira P, Ruel K, Puigdomenech P, Rigau J, Caparros-Ruiz D. The maize ZmMYB42 represses the phenylpropanoid pathway and affects the cell wall structure, composition and degradability in Arabidopsis thaliana. Plant Mol. Biol. 70: 283-296 (2009).

Sparvoli F, Martin C, Scienza A, Gavazzi G, Tonelli C. Cloning and molecular analysis of structural genes involved in flavonoid and stilbene biosynthesis in grape (Vitis vinifera L.). Plant Mol. Biol. 24: 743-755 (1994).

Spelt C, Quattrocchio F, Mol J, Koes R. ANTHOCYANIN1 of petunia controls pigment synthesis, vacuolar pH, and seed coat development by genetically distinct mechanisms. Plant Cell 14: 2121-2135 (2002).

Spelt C, Quattrocchio F, Mol JN, Koes R. anthocyanin1 of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes. Plant Cell 12: 1619-1632 (2000).

Spitaler R, Schlorhaufer PD, Ellmerer EP, Merfort I, Bortenschlager S, Stuppner H, Zidorn C. Altitudinal variation of secondary metabolite profiles in flowering heads of Arnica montana cv. ARBO. Phytochemistry 67: 409-417 (2006).

Spitzer B, Zvi MM, Ovadis M, Marhevka E, Barkai O, Edelbaum O, Marton I, Masci T, Alon M, Morin S, Rogachev I, Aharoni A, Vainstein A. Reverse genetics of floral scent: application of tobacco rattle virus-based gene silencing in Petunia. Plant Physiol. 145: 1241-1250 (2007).

Sreevidya V, Srinivasa Rao C, Sullia S, Ladha JK, Reddy PM. Metabolic engineering of rice with soybean isoflavone synthase for promoting nodulation gene expression in rhizobia. J. Exp. Bot. 57: 1957-1969 (2006).

Sritularak B, Likhitwitayawuid K. Flavonoids from the pods of Millettia erythrocalyx. Phytochemistry 67: 812-817 (2006).

Stapleton AE, Walbot V. Flavonoids can protect maize DNA from the induction of ultraviolet radiation damage. Plant Physiol. 105: 881-889 (1994).

Stevens JF, Page JE. Xanthohumol and related prenylflavonoids from hops and beer: to your good health! Phytochemistry 65: 1317-1330 (2004).

Stobiecki M. Application of mass spectrometry for identification and structural studies of flavonoid glycosides. Phytochemistry 54: 237-256 (2000).

Stobiecki M, Matysiak-Kata I, Franski R, Skala J, Szopa J. Monitoring changes in anthocyanin and steroid alkaloid glycoside content in lines of transgenic potato plants using liquid chromatography/mass spectrometry. Phytochemistry 62: 959-969 (2003).

Strack D, Vogt T, Schliemann W. Recent advances in betalain research. Phytochemistry 62: 247-269 (2003).

Stracke R, De Vos RC, Bartelniewoehner L, Ishihara H, Sagasser M, Martens S, Weisshaar B. Metabolomic and genetic analyses of flavonol synthesis in Arabidopsis thaliana support the in vivo involvement of leucoanthocyanidin dioxygenase. Planta 229: 427-445 (2009).

Stracke R, Ishihara H, Huep G, Barsch A, Mehrtens F, Niehaus K, Weisshaar B. Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling. Plant J. 50: 660-677 (2007).

Subramanian S, Hu X, Lu G, Odelland JT, Yu O. The promoters of two isoflavone synthase genes respond differentially to nodulation and defense signals in transgenic soybean roots. Plant Mol. Biol. 54: 623-639 (2004).

Subramanian S, Stacey G, Yu O. Distinct, crucial roles of flavonoids during legume nodulation. Trends Plant Sci. 12: 282-285 (2007).

Subramanian S, Stacey G, Yu O. Endogenous isoflavones are essential for the establishment of symbiosis between soybean and Bradyrhizobium japonicum. Plant J. 48: 261-273 (2006).

Sugiyama A, Shitan N, Yazaki K. Ininvolvement of a soybean ATP-binding cassette-type transporter in the secretion of genistein, a signal flavonoid in legume-rhizobium symbiosis. Plant Physiol. 144: 2000-2008 (2007).

Suita K, Kiryu T, Sawada M, Mitsui M, Nakagawa M, Kanamaru K, Yamagata H. Cyclic GMP acts as a common regulator for the transcriptional activation of the flavonoid biosynthetic pathway in soybean. Planta 229: 403-413 (2009).

Suzuki H, Nakayama T, Yonekura-Sakakibara K, Fukui Y, Nakamura N, Yamaguchi MA, Tanaka Y, Kusumi T, Nishino T. cDNA cloning, heterologous expressions, and functional characterization of malonyl-coenzyme A:anthocyanidin 3-O-glucoside-6"-O-malonyltransferase from Dahlia flowers. Plant Physiol. 130: 2142-2151 (2002).

Suzuki H, Reddy MS, Naoumkina M, Aziz N, May GD, Huhman DV, Sumner LW, Blount JW, Mendes P, Dixon RA. Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta 220: 696-707 (2005).

Suzuki H, Sawada S, Watanabe K, Nagae S, Yamaguchi MA, Nakayama T, Nishino T. Identification and characterization of a novel anthocyanin malonyltransferase from scarlet sage (Salvia splendens) flowers: an enzyme that is phylogenetically separated from other anthocyanin acyltransferases. Plant J. 38: 994-1003 (2004).

Suzuki T, Kim SJ, Yamauchi H, Takigawa S, Honda Y, Mukasa Y. Characterization of a flavonoid 3-O-glucosyltransferase and its activity during cotyledon growth in buckwheat (Fagopyrum esculentum). Plant Sci. 169: 943-948 (2005).

Sweeney MT, Thomson MJ, Pfeil BE, McCouch S. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. Plant Cell 18: 283-294 (2006).

Szankowski I, Flachowsky H, Li H, Halbwirth H, Treutter D, Regos I, Hanke MV, Stich K, Fischer TC. Shift in polyphenol profile and sublethal phenotype caused by silencing of anthocyanidin synthase in apple (Malus sp.). Planta 229: 681-692 (2009).

Taguchi G, Shitchi Y, Shirasawa S, Yamamoto H, Hayashida N. Molecular cloning, characterization, and downregulation of an acyltransferase that catalyzes the malonylation of flavonoid and naphthol glucosides in tobacco cells. Plant J. 42: 481-491 (2005).

Takeda K, Sato S, Kobayashi H, Kanaitsuka Y, Ueno M, Kinoshita T, Tazaki H, Fujimori T. The anthocyanin responsible for purplish blue flower colour of Aconitum chinense. Phytochemistry 36: 613-616 (1994).

Takos AM, Jaffe FW, Jacob SR, Bogs J, Robinson SP, Walker AR. Light induced expression of a MYB gene regulates anthocyanin biosynthesis in red apples. Plant Physiol. 142: 1216-1232 (2006).

Tamagnone L, Merida A, Parr A, Mackay S, Culianez-Macia FA, Roberts K, Martin C. The AmMYB308 and AmMYB330 transcription factors from Antirrhinum regulate phenylpropanoid and lignin biosynthesis in transgenic tobacco. Plant Cell 10: 135-154 (1998).

Tanaka A, Tano S, Chantes T, Yokota Y, Shikazono N, Watanabe H. A new Arabidopsis mutant induced by ion beams affects flavonoid synthesis with spotted pigmentation in testa. Genes Genet. Syst. 72: 141-148 (1997).

Tanaka Y, Fukui Y, Fukuchi-Mizutani M, Holton TA, Higgins E, Kusumi T. Molecular cloning and characterization of Rosa hybrida dihydroflavonol 4-reductase gene. Plant Cell Physiol. 36: 1023-1031 (1995).

Tanaka Y, Ohmiya A. Seeing is believing: engineering anthocyanin and carotenoid biosynthetic pathways. Curr. Opin. Biotechnol. 19: 190-197 (2008).

Tanaka Y, Sasaki N, Ohmiya A. Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids. Plant J. 54: 733-749 (2008).

Tanaka Y, Tsuda S, Kusumi T. Metabolic engineering to modify flower color. Plant Cell Physiol. 39: 1119-1126 (1998).

Tanaka Y, Yonekura K, Fukuchi-Mizutani M, Fukui Y, Fujiwara H, Ashikari T, Kusumi T. Molecular and biochemical characterization of three anthocyanin synthetic enzymes from Gentiana triflora. Plant Cell Physiol. 37: 711-716 (1996).

Taskova RM, Gotfredsen CH, Jensen SR. Chemotaxonomy of Veroniceae and its allies in the Plantaginaceae. Phytochemistry 67: 286-301 (2006).

Tatsuzawa F, Saito N, Mikanagi Y, Shinoda K, Toki K, Shigihara A, Honda T. An unusual acylated malvidin 3-glucoside from flowers of Impatiens textori Miq. (Balsaminaceae). Phytochemistry 70: 672-674 (2009).

Tatsuzawa F, Saito N, Toki K, Shinoda K, Shigihara A, Honda T. Triacylated cyanidin 3-(3X-glucosylsambubioside)-5-glucosides from the flowers of Malcolmia maritima. Phytochemistry 69: 1029-1036 (2008).

Tattini M, Guidi L, Morassi-Bonzi L, Pinelli P, Remorini D, Degl'innocenti E, Giordano C, Massai R, Agati G. On the role of flavonoids in the integrated mechanisms of response of Ligustrum vulgare and Phillyrea latifolia to high solar radiation. New Phytol. 167: 457-470 (2005).

Taulavuori E, Hellstrom EK, Taulavuori K, Laine K. Comparison of two methods used to analyse lipid peroxidation from Vaccinium myrtillus (L.) during snow removal, reacclimation and cold acclimation. J. Exp. Bot. 52: 2375-2380 (2001).

Taylor LP, Briggs WR. Genetic regulation and photocontrol of anthocyanin accumulation in maize seedlings. Plant Cell 2: 115-127 (1990).

Taylor LP, Grotewold E. Flavonoids as developmental regulators. Curr. Opin. Plant Biol. 8: 317-323 (2005).

Tebayashi S, Ishihara A, Iwamura H. Elicitor-induced changes in isoflavonoid metabolism in red clover roots. J. Exp. Bot. 52: 681-689 (2001).

Tegelberg R, Julkunen-Tiitto RJ, Aphalo PJ. Red: far-red light ratio and UV-B radiation: their effects on leaf phenolics and growth of silver birch seedlings. Plant Cell Environ. 27: 1005-1013 (2004).

Teklemariam TA, Blake TJ. Phenylalanine ammonia-lyase-induced freezing tolerance in jack pine (Pinus banksiana) seedlings treated with low, ambient levels of ultraviolet-B radiation. Physiol. Plant. 122: 244-253 (2004).

Teng S, Keurentjes J, Bentsink L, Koornneef M, Smeekens S. Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene. Plant Physiol. 139: 1840-1852 (2005).

Terahara N, Callebaut A, Ohba R, Nagata T, Ohnishi-Kameyama M, Suzuki M. Triacylated anthocyanins from Ajuga reptans flowers and cell cultures. Phytochemistry 42: 199-203 (1996).

Terahara N, Yamaguchi M, Honda T. Malonylated anthocyanins from bulbs of red onion, Allium cepa L. Biosci. Biotechnol. Biochem. 58: 1324-1325 (1994).

Terrier N, Glissant D, Grimplet J, Barrieu F, Abbal P, Couture C, Ageorges A, Atanassova R, Leon C, Renaudin JP, Dedaldechamp F, Romieu C, Delrot S, Hamdi S. Isogene specific oligo arrays reveal multifaceted changes in gene expression during grape berry (Vitis vinifera L.) development. Planta 222: 832-847 (2005).

Terrier N, Torregrosa L, Ageorges A, Vialet S, Verries C, Cheynier V, Romieu C. Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in grapevine and suggests additional targets in the pathway. Plant Physiol. 149: 1028-1041 (2009).

Teycheney PY, Tepfer M. Virus-specific spatial differences in the interference with silencing of the chs-A gene in non-transgenic petunia. J. Gen. Virol. 82: 1239-1243 (2001).

Thain SC, Murtas G, Lynn JR, McGrath RB, Millar AJ. The circadian clock that controls gene expression in Arabidopsis is tissue specific. Plant Physiol. 130: 102-110 (2002).

Thoison O, Sevenet T, Niemeyer HM, Russell GB. Insect antifeedant compounds from Nothofagus dombeyi and N. pumilio. Phytochemistry 65: 2173-2176 (2004).

Tian L, Blount JW, Dixon RA. Phenylpropanoid glycosyltransferases from osage orange (Maclura pomifera) fruit. FEBS Lett. 580: 6915-6920 (2006).

Tian L, Dixon RA. Engineering isoflavone metabolism with an artificial bifunctional enzyme. Planta 224: 496-507 (2006).

Ticconi CA, Delatorre CA, Abel S. Attenuation of phosphate starvation responses by phosphite in Arabidopsis. Plant Physiol. 127: 963-972 (2001).

Ticconi CA, Delatorre CA, Lahner B, Salt DE, Abel S. Arabidopsis pdr2 reveals a phosphate-sensitive checkpoint in root development. Plant J. 37: 801-814 (2004).

Tiffin P, Miller RE, Rausher MD. Control of expression patterns of anthocyanin structural genes by two loci in the common morning glory. Genes Genet. Syst. 73: 105-110 (1998).

Toda K, Yang D, Yamanaka N, Watanabe S, Harada K, Takahashi R. A single-base deletion in soybean flavonoid 3'-hydroxylase gene is associated with gray pubescence color. Plant Mol. Biol. 50: 187-196 (2002).

Todd JJ, Vodkin LO. Pigmented soybean (Glycine max) seed coats accumulate proanthocyanidins during development. Plant Physiol. 102: 663-670 (1993).

Toguri T, Umemoto N, Kobayashi O, Ohtani T. Activation of anthocyanin synthesis genes by white light in eggplant hypocotyl tissues, and identification of an inducible P-450 cDNA. Plant Mol. Biol. 23: 933-946 (1993).

Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K. Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J. 42: 218-235 (2005).

Toki K, Saito N, Irie Y, Tatsuzawa F, Shigihara A, Honda T. 7-O-Methylated anthocyanidin glycosides from Catharanthus roseus. Phytochemistry 69: 1215-1219 (2008).

Tomas-Barberan FA, Gil MI, Ferreres F, Rivera D, Oobon C, Tomas-Lorente F. Distribution of 8-hydroxyflavone glycosides and flavonoid aglycones in some Spanish Sideritis species. Biochem. Syst. Ecol. 21: 487-497 (1993).

Tonelli C, Consonni G, Dolfini SF, Dellaporta SL, Viotti A, Gavazzi G. Genetic and molecular analysis of Sn, a light-inducible, tissue specific regulatory gene in maize. Mol. Gen. Genet. 225: 401-410 (1991).

Torres CA, Andrews PK, Davies NM. Physiological and biochemical responses of fruit exocarp of tomato (Lycopersicon esculentum Mill.) mutants to natural photo-oxidative conditions. J. Exp. Bot. 57: 1933-1947 (2006).

Treutter D. Significance of flavonoids in plant resistance and enhancement of their biosynthesis. Plant Biol. (Stuttg.) 7: 581-591 (2005).

Trull MC, Deikman J. An Arabidopsis mutant missing one acid phosphatase isoform. Planta 206: 544-550 (1998).

Tsuda T, Shiga K, Ohshima K, Kawakishi S, Osawa T. Inhibition of lipid peroxidation and the active oxygen radical scavenging effect of anthocyanin pigments isolated from Phaseolus vulgaris L. Biochem. Pharmacol. 52: 1033-1039 (1996).

Tucker G. Nutritional enhancement of plants. Curr. Opin. Biotechnol. 14: 221-225 (2003).

Tuerck JA, Fromm ME. Elements of the maize A1 promoter required for transactivation by the anthocyanin B/C1 or phlobaphene P regulatory genes. Plant Cell 6: 1655-1663 (1994).

Tuteja JH, Clough SJ, Chan WC, Vodkin LO. Tissue-specific gene silencing mediated by a naturally occurring chalcone synthase gene cluster in Glycine max. Plant Cell 16: 819-835 (2004).

Ueyama Y, Suzuki K, Fukuchi-Mizutani M, Fukui Y, Miyazaki K, Ohkawa H, Kusumi T, Tanaka Y. Molecular and biochemical characterization of torenia flavonoid 3'-hydroxylase and flavone synthase II and modification of flower color by modulating the expression of these genes. Plant Sci. 163: 253-263 (2002).

Uimari A, Strommer J. Anthocyanin regulatory mutations in pea: effects on gene expression and complementation by R-like genes of maize. Mol. Gen. Genet. 257: 198-204 (1998).

Uimari A, Strommer J. Myb26: a MYB-like protein of pea flowers with affinity for promoters of phenylpropanoid genes. Plant J. 12: 1273-1284 (1997).

Uppalapati SR, Ayoubi P, Weng H, Palmer DA, Mitchell RE, Jones W, Bender CL. The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomato. Plant J. 42: 201-217 (2005).

Urbanczyk-Wochniak E, Sumner LW. MedicCyc: a biochemical pathway database for Medicago truncatula. Bioinformatics 23: 1418-1423 (2007).

Uriburu ML, De La Fuente JR, Palermo J, Gil RR, Sosa VE. Constituents of two Flourensia species. Phytochemistry 65: 2039-2043 (2004).

Uriburu ML, Gil RR, Sosa VE, de la Fuente JR. Prenylflavonoids from Flourensia fiebrigii. Phytochemistry 68: 1295-1299 (2007).

Vaknin H, Bar-Akiva A, Ovadia R, Nissim-Levi A, Forer I, Weiss D, Oren-Shamir M. Active anthocyanin degradation in Brunfelsia calycina (yesterday-today-tomorrow) flowers. Planta 222: 19-26 (2005).

Valkama E, Salminen JP, Koricheva J, Pihlaja K. Changes in leaf trichomes and epicuticular flavonoids during leaf development in three birch taxa. Ann. Bot. (Lond.) 94: 233-242 (2004).

van der Krol AR, Mur LA, Beld M, Mol JN, Stuitje AR. Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression. Plant Cell 2: 291-299 (1990).

van der Meer IM, Bovy AG, Bosch D. Plant-based raw material: improved food quality for better nutrition via plant genomics. Curr. Opin. Biotechnol. 12: 488-492 (2001).

van der Meer IM, Stam ME, van Tunen AJ, Mol JN, Stuitje AR. Antisense inhibition of flavonoid biosynthesis in petunia anthers results in male sterility. Plant Cell 4: 253-262 (1992).

van der Rest B, Danoun S, Boudet AM, Rochange SF. Down-regulation of cinnamoyl-CoA reductase in tomato (Solanum lycopersicum L.) induces dramatic changes in soluble phenolic pools. J. Exp. Bot. 57: 1399-1411 (2006).

van Houwelingen A, Souer E, Mol J, Koes R. Epigenetic interactions among three dTph1 transposons in two homologous chromosomes activate a new excision-repair mechanism in Petunia. Plant Cell 11: 1319-1336 (1999).

van Houwelingen A, Souer E, Spelt K, Kloos D, Mol J, Koes R. Analysis of flower pigmentation mutants generated by random transposon mutagenesis in Petunia hybrida. Plant J. 13: 39-50 (1998).

van Tunen AJ, Koes RE, Spelt CE, van der Krol AR, Stuitje AR, Mol JN. Cloning of the two chalcone flavanone isomerase genes from Petunia hybrida: coordinate, light-regulated and differential expression of flavonoid genes. EMBO J. 7: 1257-1263 (1988).

van Tunen AJ, Mur LA, Recourt K, Gerats AG, Mol JN. Regulation and manipulation of flavonoid gene expression in anthers of petunia: the molecular basis of the Po mutation. Plant Cell 3: 39-48 (1991).

Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, Gruissem W, Inze D, Van Breusegem F. Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol. 139: 806-821 (2005).

Veitch NC, Kite GC, Lewis GP. Flavonol pentaglycosides of Cordyla (Leguminosae: Papilionoideae: Swartzieae): distribution and taxonomic implications. Phytochemistry 69: 2329-2335 (2008).

Verhoeyen ME, Bovy A, Collins G, Muir S, Robinson S, de Vos CH, Colliver S. Increasing antioxidant levels in tomatoes through modification of the flavonoid biosynthetic pathway. J. Exp. Bot. 53: 2099-2106 (2002).

Veronese P, Narasimhan ML, Stevenson RA, Zhu JK, Weller SC, Subbarao KV, Bressan RA. Identification of a locus controlling Verticillium disease symptom response in Arabidopsis thaliana. Plant J. 35: 574-587 (2003).

Vincent D, Lapierre C, Pollet B, Cornic G, Negroni L, Zivy M. Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation. Plant Physiol. 137: 949-960 (2005).

Vogel JP, Schuerman P, Woeste K, Brandstatter I, Kieber JJ. Isolation and characterization of Arabidopsis mutants defective in the induction of ethylene biosynthesis by cytokinin. Genetics 149: 417-427 (1998).

Vogt T. Regiospecificity and kinetic properties of a plant natural product O-methyltransferase are determined by its N-terminal domain. FEBS Lett. 561: 159-162 (2004).

Vogt T. Substrate specificity and sequence analysis define a polyphyletic origin of betanidin 5- and 6-O-glucosyltransferase from Dorotheanthus bellidiformis. Planta 214: 492-495 (2002).

Vogt T, Grimm R, Strack D. Cloning and expression of a cDNA encoding betanidin 5-O-glucosyltransferase, a betanidin- and flavonoid-specific enzyme with high homology to inducible glucosyltransferases from the Solanaceae. Plant J. 19: 509-519 (1999).

Vogt T, Zimmermann E, Grimm R, Meyer M, Strack D. Are the characteristics of betanidin glucosyltransferases from cell-suspension cultures of Dorotheanthus bellidiformis indicative of their phylogenetic relationship with flavonoid glucosyltransferases? Planta 203: 349-361 (1997).

Vom Endt D, Kijne JW, Memelink J. Transcription factors controlling plant secondary metabolism: what regulates the regulators? Phytochemistry 61: 107-114 (2002).

Wade HK, Bibikova TN, Valentine WJ, Jenkins GI. Interactions within a network of phytochrome, cryptochrome and UV-B phototransduction pathways regulate chalcone synthase gene expression in Arabidopsis leaf tissue. Plant J. 25: 675-685 (2001).

Wade HK, Sohal AK, Jenkins GI. Arabidopsis ICX1 is a negative regulator of several pathways regulating flavonoid biosynthesis genes. Plant Physiol. 131: 707-715 (2003).

Wahid A, Ghazanfar A. Possible involvement of some secondary metabolites in salt tolerance of sugarcane. J. Plant Physiol. 163: 723-730 (2006).

Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Zeng L, Wanamaker SI, Mandal J, Xu J, Cui X, Close TJ. Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol. 139: 822-835 (2005).

Walker AR, Davison PA, Bolognesi-Winfield AC, James CM, Srinivasan N, Blundell TL, Esch JJ, Marks MD, Gray JC. The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein. Plant Cell 11: 1337-1350 (1999).

Walker AR, Lee E, Bogs J, McDavid DA, Thomas MR, Robinson SP. White grapes arose through the mutation of two similar and adjacent regulatory genes. Plant J. 49: 772-785 (2007).

Walker AR, Lee E, Robinson SP. Two new grape cultivars, bud sports of Cabernet Sauvignon bearing pale-coloured berries, are the result of deletion of two regulatory genes of the berry colour locus. Plant Mol. Biol. 62: 623-635 (2006).

Walker EL, Eggleston WB, Demopulos D, Kermicle J, Dellaporta SL. Insertions of a novel class of transposable elements with a strong target site preference at the r locus of maize. Genetics 146: 681-693 (1997).

Walker EL, Robbins TP, Bureau TE, Kermicle J, Dellaporta SL. Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complex. EMBO J. 14: 2350-2363 (1995).

Wang CS, Todd JJ, Vodkin LO. Chalcone synthase mRNA and activity are reduced in yellow soybean seed coats with dominant I alleles. Plant Physiol. 105: 739-748 (1994).

Wang G, Tian L, Aziz N, Broun P, Dai X, He J, King A, Zhao PX, Dixon RA. Terpene biosynthesis in glandular trichomes of hop (Humulus lupulus L.). Plant Physiol. 148: 1254-1266 (2008).

Wang GJ, Tsai TH, Lin LC. Prenylflavonol, acylated flavonol glycosides and related compounds from Epimedium sagittatum. Phytochemistry 68: 2455-2464 (2007).

Wang P, Li S, Ownby S, Zhang Z, Yuan W, Zhang W, Scott Beasley R. Ecdysteroids and a sucrose phenylpropanoid ester from Froelichia floridana. Phytochemistry 70: 430-436 (2009).

Wang X, Olsen O, Knudsen S. Expression of the dihydroflavonol reductase gene in an anthocyanin-free barley mutant. Hereditas 119: 67-75 (1993).

Wang Y, Xu K, Lin L, Pan Y, Zheng X. Geranyl flavonoids from the leaves of Artocarpus altilis. Phytochemistry 68: 1300-1306 (2007).

Warnasooriya SN, Montgomery BL. Detection of spatial-specific phytochrome responses using targeted expression of biliverdin reductase in Arabidopsis thaliana. Plant Physiol. 149: 424-433 (2009).

Wasson AP, Pellerone FI, Mathesius U. Silencing the flavonoid pathway in Medicago truncatula inhibits root nodule formation and prevents auxin transport regulation by rhizobia. Plant Cell 18: 1617-1629 (2006).

Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, van Zyl L, Egertsdotter U, Sederoff RR, Grene R. Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine. Plant Physiol. 133: 1702-1716 (2003).

Weiss D. Regulation of flower pigmentation and growth: multiple signaling pathways control anthocyanin synthesis in expanding petals. Physiol. Plant. 110: 152-157 (2000).

Weiss D, Van Der Luit A, Knegt E, Vermeer E, Mol J, Kooter JM. Identification of endogenous gibberellins in petunia flowers. Induction of anthocyanin biosynthetic gene expression and the antagonistic effect of abscisic acid. Plant Physiol. 107: 695-702 (1995).

Weiss D, van der Luit AH, Kroon JT, Mol JN, Kooter JM. The petunia homologue of the Antirrhinum majus candi and Zea mays A2 flavonoid genes; homology to flavanone 3-hydroxylase and ethylene-forming enzyme. Plant Mol. Biol. 22: 893-897 (1993).

Weisshaar B, Jenkins GI. Phenylpropanoid biosynthesis and its regulation. Curr. Opin. Plant Biol. 1: 251-257 (1998).

Weisskopf L, Abou-Mansour E, Fromin N, Tomasi N, Santelia D, Edelkott I, Neumann G, Aragno M, Tabacchi R, Martinoia E. White lupin has developed a complex strategy to limit microbial degradation of secreted citrate required for phosphate acquisition. Plant Cell Environ. 29: 919-927 (2006).

Wellmann E, Schneider-Ziebert U, Beggs CJ. UV-B inhibition of phytochrome-mediated anthocyanin formation in Sinapis alba L. cotyledons: action spectrum and the role of photoreactivation. Plant Physiol. 75: 997-1000 (1984).

Wellmann F, Matern U, Lukacin R. Significance of C-terminal sequence elements for Petunia flavanone 3beta-hydroxylase activity. FEBS Lett. 561: 149-154 (2004).

Weng JR, Chan SC, Lu YH, Lin HC, Ko HH, Lin CN. Antiplatelet prenylflavonoids from Artocarpus communis. Phytochemistry 67: 824-829 (2006).

Wetzel CM, Harmacek LD, Yuan LH, Wopereis JL, Chubb R, Turini P. Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.). J. Exp. Bot. 60: 1715-1727 (2009).

White CN, Rivin CJ. Gibberellins and seed development in maize. II. Gibberellin synthesis inhibition enhances abscisic acid signaling in cultured embryos. Plant Physiol. 122: 1089-1098 (2000).

Williams CE, Grotewold E. Differences between plant and animal Myb domains are fundamental for DNA binding activity, and chimeric Myb domains have novel DNA binding specificities. J. Biol. Chem. 272: 563-571 (1997).

Williams ME, Torabinejad J, Cohick E, Parker K, Drake EJ, Thompson JE, Hortter M, Dewald DB. Mutations in the Arabidopsis phosphoinositide phosphatase gene SAC9 lead to overaccumulation of PtdIns(4,5)P2 and constitutive expression of the stress-response pathway. Plant Physiol. 138: 686-700 (2005).

Winefield CS, Lewis DH, Swinny EE, Zhang HB, Arathoon HS, Fischer TC, Halbwirth H, Stich K, Gosch C, Forkmann G, Davies KM. Investigation of the biosynthesis of 3-deoxyanthocyanins in Sinningia cardinalis. Physiol. Plant. 124: 419-430 (2005).

Winkel-Shirley B. It takes a garden. How work on diverse plant species has contributed to an understanding of flavonoid metabolism. Plant Physiol. 127: 1399-1404 (2001).

Winkel-Shirley B. Biosynthesis of flavonoids and effects of stress. Curr. Opin. Plant Biol. 5: 218-223 (2002).

Winkel-Shirley B. Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 126: 485-493 (2001).

Winkel-Shirley B. Evidence for enzyme complexes in the phenylpropanoid and flavonoid pathways. Physiol. Plant. 107: 142-149 (1999).

Wisman E, Hartmann U, Sagasser M, Baumann E, Palme K, Hahlbrock K, Saedler H, Weisshaar B. Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. U.S.A. 95: 12432-12437 (1998).

Witte S, Moco S, Vervoort J, Matern U, Martens S. Recombinant expression and functional characterisation of regiospecific flavonoid glucosyltransferases from Hieracium pilosella L. Planta 229: 1135-1146 (2009).

Wollenweber E, Stevens JF, Dorr M, Rozefelds AC. Taxonomic significance of flavonoid variation in temperate species of Nothofagus. Phytochemistry 62: 1125-1131 (2003).

Wood KV, Bonham C, Hipskind J, Nicholson RL. Analysis of anthocyanins and 3-deoxyanthocyanidins by plasma desorption mass spectrometry. Phytochemistry 37: 557-560 (1994).

Wu XR, Chen Z, Shende A, Dooner HK, Folk WR. Visualizing bz1 missense suppression in Zea mays: an assay for monocot tRNA expression and utilization. Plant Mol. Biol. 61: 795-798 (2006).

Wuyts N, Lognay G, Swennen R, De Waele D. Nematode infection and reproduction in transgenic and mutant Arabidopsis and tobacco with an altered phenylpropanoid metabolism. J. Exp. Bot. 57: 2825-2835 (2006).

Xiang C, Werner BL, Christensen EM, Oliver DJ. The biological functions of glutathione revisited in Arabidopsis transgenic plants with altered glutathione levels. Plant Physiol. 126: 564-574 (2001).

Xiang W, Li RT, Wang ZY, Li SH, Zhao QS, Zhang HJ, Sun HD. ent-Kaurene diterpenoids from Isodon oresbius. Phytochemistry 65: 1173-1177 (2004).

Xie DY, Jackson LA, Cooper JD, Ferreira D, Paiva NL. Molecular and biochemical analysis of two cDNA clones encoding dihydroflavonol-4-reductase from Medicago truncatula. Plant Physiol. 134: 979-994 (2004).

Xie DY, Sharma SB, Paiva NL, Ferreira D, Dixon RA. Role of anthocyanidin reductase, encoded by BANYULS in plant flavonoid biosynthesis. Science 299: 396-399 (2003).

Xie DY, Sharma SB, Wright E, Wang ZY, Dixon RA. Metabolic engineering of proanthocyanidins through co-expression of anthocyanidin reductase and the PAP1 MYB transcription factor. Plant J. 45: 895-907 (2006).

Xu P, Rogers SJ, Roossinck MJ. Expression of antiapoptotic genes bcl-xL and ced-9 in tomato enhances tolerance to viral-induced necrosis and abiotic stress. Proc. Natl. Acad. Sci. U.S.A. 101: 15805-15810 (2004).

Xu W, Shioiri H, Kojima M, Nozue M. Primary structure and expression of a 24-kD vacuolar protein (VP24) precursor in anthocyanin-producing cells of sweet potato in suspension culture. Plant Physiol. 125: 447-455 (2001).

Xu YC, Leung SW, Yeung DK, Hu LH, Chen GH, Che CM, Man RY. Structure-activity relationships of flavonoids for vascular relaxation in porcine coronary artery. Phytochemistry 68: 1179-1188 (2007).

Yadav PP, Ahmad G, Maurya R. Furanoflavonoids from Pongamia pinnata fruits. Phytochemistry 65: 439-443 (2004).

Yamagishi K, Nagata N, Yee KM, Braybrook SA, Pelletier J, Fujioka S, Yoshida S, Fischer RL, Goldberg RB, Harada JJ. TANMEI/EMB2757 encodes a WD repeat protein required for embryo development in Arabidopsis. Plant Physiol. 139: 163-173 (2005).

Yamaguchi LF, Kato MJ, Di Mascio P. Biflavonoids from Araucaria angustifolia protect against DNA UV-induced damage. Phytochemistry 70: 615-620 (2009).

Yamamoto YY, Matsui M, Ang LH, Deng XW. Role of a COP1 interactive protein in mediating light-regulated gene expression in Arabidopsis. Plant Cell 10: 1083-1094 (1998).

Yamane T, Jeong ST, Goto-Yamamoto N, Koshita Y, Kobayashi S. Effects of temperature on anthocyanin biosynthesis in grape berry skins. Am. J. Enol. Vitic. 57: 54-59 (2006).

Yamazaki M, Gong Z, Fukuchi-Mizutani M, Fukui Y, Tanaka Y, Kusumi T, Saito K. Molecular cloning and biochemical characterization of a novel anthocyanin 5-O-glucosyltransferase by mRNA differential display for plant forms regarding anthocyanin. J. Biol. Chem. 274: 7405-7411 (1999).

Yamazaki M, Nakajima J, Yamanashi M, Sugiyama M, Makita Y, Springob K, Awazuhara M, Saito K. Metabolomics and differential gene expression in anthocyanin chemo-varietal forms of Perilla frutescens. Phytochemistry 62: 987-995 (2003).

Yamazaki M, Yamagishi E, Gong Z, Fukuchi-Mizutani M, Fukui Y, Tanaka Y, Kusumi T, Yamaguchi M, Saito K. Two flavonoid glucosyltransferases from Petunia hybrida: molecular cloning, biochemical properties and developmentally regulated expression. Plant Mol. Biol. 48: 401-411 (2002).

Yamazaki Y, Suh DY, Sitthithaworn W, Ishiguro K, Kobayashi Y, Shibuya M, Ebizuka Y, Sankawa U. Diverse chalcone synthase superfamily enzymes from the most primitive vascular plant, Psilotum nudum. Planta 214: 75-84 (2001).

Yang J, Park S, Kamdem DP, Keathley DE, Retzel E, Paule C, Kapur V, Han KH. Novel gene expression profiles define the metabolic and physiological processes characteristic of wood and its extractive formation in a hardwood tree species, Robinia pseudoacacia. Plant Mol. Biol. 52: 935-956 (2003).

Yang KY, Kim YM, Lee S, Song PS, Soh MS. Overexpression of a mutant basic helix-loop-helix protein HFR1, HFR1-deltaN105, activates a branch pathway of light signaling in Arabidopsis. Plant Physiol. 133: 1630-1642 (2003).

Yang S, Terachi T, Yamagishi H. Inhibition of chalcone synthase expression in anthers of Raphanus sativus with Ogura male sterile cytoplasm. Ann. Bot. (Lond.) 102: 483-489 (2008).

Yang Y, He F, Yu L, Chen X, Lei J, Ji J. Influence of drought on oxidative stress and flavonoid production in cell suspension culture of Glycyrrhiza inflata Batal. Z. Naturforsch. [C.] 62: 410-416 (2007).

Yang YQ, Yao Y, Xu G, Li CY. Growth and physiological responses to drought and elevated ultraviolet-B in two contrasting populations of Hippophae rhamnoides. Physiol. Plant. 124: 431-440 (2005).

Yanovsky MJ, Whitelam GC, Casal JJ. fhy3-1 retains inductive responses of phytochrome A. Plant Physiol. 123: 235-242 (2000).

Ye CL, Lu YH, Wei DZ. Flavonoids from Cleistocalyx operculatus. Phytochemistry 65: 445-447 (2004).

Yeskaliyeva B, Mesaik MA, Abbaskhan A, Kulsoom A, Burasheva GSh, Abilov ZhA, Choudhary MI, Atta-Ur-Rahman. Bioactive flavonoids and saponins from Climacoptera obtusifolia. Phytochemistry 67: 2392-2397 (2006).

Yonekura-Sakakibara K, Tanaka Y, Fukuchi-Mizutani M, Fujiwara H, Fukui Y, Ashikari T, Murakami Y, Yamaguchi M, Kusumi T. Molecular and biochemical characterization of a novel hydroxycinnamoyl-CoA: anthocyanin 3-O-glucoside-6"-O-acyltransferase from Perilla frutescens. Plant Cell Physiol. 41: 495-502 (2000).

Yonekura-Sakakibara K, Tohge T, Matsuda F, Nakabayashi R, Takayama H, Niida R, Watanabe-Takahashi A, Inoue E, Saito K. Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell 20: 2160-2176 (2008).

Yoshida K, Ito D, Shinkai Y, Kondo T. Change of color and components in sepals of chameleon hydrangea during maturation and senescence. Phytochemistry 69: 3159-3165 (2008).

Yoshida K, Iwasaka R, Kaneko T, Sato S, Tabata S, Sakuta M. Functional differentiation of Lotus japonicus TT2s, R2R3-MYB transcription factors comprising a multigene family. Plant Cell Physiol. 49: 157-169 (2008).

Yoshida K, Kitahara S, Ito D, Kondo T. Ferric ions involved in the flower color development of the Himalayan blue poppy, Meconopsis grandis. Phytochemistry 67: 992-998 (2006).

Yoshihara N, Fukuchi-Mizutani M, Okuhara H, Tanaka Y, Yabuya T. Molecular cloning and characterization of O-methyltransferases from the flower buds of Iris hollandica. J. Plant Physiol. 165: 415-422 (2008).

Yoshihara N, Imayama T, Fukuchi-Mizutani M, Okuhara H, Tanaka Y, Ino I, Yabuya T. cDNA cloning and characterization of UDP-glucose : anthocyanidin 3-O-glucosyltransferase in Iris hollandica. Plant Sci. 169: 496-501 (2005).

Yoshimura M, Ito H, Miyashita K, Hatano T, Taniguchi S, Amakura Y, Yoshida T. Flavonol glucuronides and C-glucosidic ellagitannins from Melaleuca squarrosa. Phytochemistry 69: 3062-3069 (2008).

Yu CK, Springob K, Schmidt J, Nicholson RL, Chu IK, Yip WK, Lo C. A stilbene synthase gene (SbSTS1) is involved in host and nonhost defense responses in sorghum. Plant Physiol. 138: 393-401 (2005).

Yu XH, Chen MH, Liu CJ. Nucleocytoplasmic-localized acyltransferases catalyze the malonylation of 7-O-glycosidic (iso)flavones in Medicago truncatula. Plant J. 55: 382-396 (2008).

Zakhleniuk OV, Raines CA, Lloyd JC. pho3: a phosphorus-deficient mutant of Arabidopsis thaliana (L.) Heynh.. Planta 212: 529-534 (2001).

Zeliou K, Manetas Y, Petropoulou Y. Transient winter leaf reddening in Cistus creticus characterizes weak (stress-sensitive) individuals, yet anthocyanins cannot alleviate the adverse effects on photosynthesis. J. Exp. Bot. 60: 3031-3042 (2009).

Zhang F, Peterson T. Comparisons of maize pericarp color1 alleles reveal paralogous gene recombination and an organ-specific enhancer region. Plant Cell 17: 903-914 (2005).

Zhang J, Subramanian S, Stacey G, Yu O. Flavones and flavonols play distinct critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti. Plant J. 57: 171-183 (2009).

Zhang L, Robbins MP, Carver TLW, Zeyen RJ. Induction of phenylpropanoid gene transcripts in oat attacked by Erysiphe graminis at 20 degrees C and 10 degrees C. Physiol. Mol. Plant Pathol. 51: 15-33 (1997).

Zhang P, Wang Y, Zhang J, Maddock S, Snook M, Peterson T. A maize QTL for silk maysin levels contains duplicated Myb-homologous genes which jointly regulate flavone biosynthesis. Plant Mol. Biol. 52: 1-15 (2003).

Zhang YC, Gong SF, Li QH, Sang Y, Yang HQ. Functional and signaling mechanism analysis of rice CRYPTOCHROME 1. Plant J. 46: 971-983 (2006).

Zhao P, Hamada C, Inoue K, Yamamoto H. Efficient production and capture of 8-prenylnaringenin and leachianone G-biosynthetic intermediates of sophoraflavanone G-by the addition of cork tissue to cell suspension cultures of Sophora flavescens. Phytochemistry 62: 1093-1099 (2003).

Zhao P, Iwamoto Y, Kouno I, Egami Y, Yamamoto H. Stimulating the production of homoisoflavonoids in cell suspension cultures of Caesalpinia pulcherrima using cork tissue. Phytochemistry 65: 2455-2461 (2004).

Zhou B, Li Y, Xu Z, Yan H, Homma S, Kawabata S. Ultraviolet A-specific induction of anthocyanin biosynthesis in the swollen hypocotyls of turnip (Brassica rapa). J. Exp. Bot. 58: 1771-1781 (2007).

Zhou LL, Zeng HN, Shi MZ, Xie DY. Development of tobacco callus cultures over expressing Arabidopsis PAP1/MYB75 transcription factor and characterization of anthocyanin biosynthesis. Planta 229: 37-51 (2008).

Zhou YC, Dieterle M, Buche C, Kretsch T. The negatively acting factors EID1 and SPA1 have distinct functions in phytochrome A-specific light signaling. Plant Physiol. 128: 1098-1108 (2002).

Zon J, Miziak P, Amrhein N, Gancarz R. Inhibitors of phenylalanine ammonia-lyase (PAL): synthesis and biological evaluation of 5-substituted 2-aminoindane-2-phosphonic acids. Chem. Biodivers. 2: 1187-1194 (2005).

Zuker A, Tzfira T, Ben-Meir H, Ovadis M, Shklarman E, Itzhaki H, Forkmann G, Martens S, Neta-Sharir I, Weiss D, Vainstein A. Modification of flower color and fragrance by antisense suppression of the flavanone 3-hydroxylase gene. Mol. Breed. 9: 33-41 (2002).

Number of references = 978

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