Agger T, Petersen JB, O'Connor SM, Murphy RL, Kelly JM, Nielsen J 2002 Physiological characterisation of recombinant Aspergillus nidulans strains with different creA genotypes expressing A. oryzae alpha-amylase. J. Biotechnol. 92: 279-285.

Aleksenko A, Liu W, Gojkovic Z, Nielsen J, Piskur J 1999 Aspergillus nidulans and the evolutionary origin of fungal dihydroorotases. Mol. Microbiol. 33: 599-611.

Atia KS, Ismail SA, El-Arnaouty MB, Dessouki AM 2003 Use of co-immobilized beta-amylase and pullulanase in reduction of saccharification time of starch and increase in maltose yield. Biotechnol. Prog. 19: 853-857.

Bandani AR 2005 Effect of plant a-amylase inhibitors on Sunn pest, Eurygaster integriceps Puton (Hemiptera: Scutelleridae), alpha-amylase activity. Commun. Agric. Appl. Biol. Sci. 70: 869-873.

Beatty MK, Rahman A, Cao H, Woodman W, Lee M, Myers AM, James MG 1999 Purification and molecular genetic characterization of ZPU1, a pullulanase-type starch-debranching enzyme from maize. Plant Physiol. 119: 255-266.

Beaujean A, Ducrocq-Assaf C, Sangwan RS, Lilius G, Bulow L, Sangwan-Norreel BS 2000 Engineering direct fructose production in processed potato tubers by expressing a bifunctional alpha-amylase/glucose isomerase gene complex. Biotechnol. Bioeng. 70: 9-16.

Beligni MV, Fath A, Bethke PC, Lamattina L, Jones RL 2002 Nitric oxide acts as an antioxidant and delays programmed cell death in barley aleurone layers. Plant Physiol. 129: 1642-1650.

Bethke PC, Hwang YS, Zhu T, Jones RL 2006 Global patterns of gene expression in the aleurone of wild-type and dwarf1 mutant rice. Plant Physiol. 140: 484-498.

Bethke PC, Lonsdale JE, Fath A, Jones RL 1999 Hormonally regulated programmed cell death in barley aleurone cells. Plant Cell 11: 1033-1046.

Brandazza A, Angeli S, Tegoni M, Cambillau C, Pelosi P 2004 Plant stress proteins of the thaumatin-like family discovered in animals. FEBS Lett. 572: 3-7.

Brusilow SW 2002 Hyperammonemic encephalopathy. Medicine (Baltimore) 81: 240-249.

Burton RA, Jenner H, Carrangis L, Fahy B, Fincher GB, Hylton C, Laurie DA, Parker M, Waite D, Van Wegen S, Verhoeven T, Denyer K 2002 Starch granule initiation and growth are altered in barley mutants that lack isoamylase activity. Plant J. 31: 97-112.

Burton RA, Zhang XQ, Hrmova M, Fincher GB 1999 A single limit dextrinase gene is expressed both in the developing endosperm and in germinated grains of barley. Plant Physiol. 119: 859-871.

Casaretto J, Ho TH 2003 The transcription factors HvABI5 and HvVP1 are required for the abscisic acid induction of gene expression in barley aleurone cells. Plant Cell 15: 271-284.

Castro AJ, Clement C 2007 Sucrose and starch catabolism in the anther of Lilium during its development: a comparative study among the anther wall, locular fluid and microspore/pollen fractions. Planta 225: 1573-1582.

Chandler PM, Marion-Poll A, Ellis M, Gubler F 2002 Mutants at the Slender1 locus of barley cv Himalaya. Molecular and physiological characterization. Plant Physiol. 129: 181-190.

Chandler PM, Robertson M 1999 Gibberellin dose-response curves and the characterization of dwarf mutants of barley. Plant Physiol. 120: 623-632.

Chang M, Wang B, Chen X, Wu R 1999 Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-c expression in rice. Plant Mol. Biol. 39: 105-115.

Chen MH, Huang LF, Li HM, Chen YR, Yu SM 2004 Signal peptide-dependent targeting of a rice {alpha}-amylase and cargo proteins to plastids and extracellular compartments of plant cells. Plant Physiol. 135: 1367-1377.

Chen PW, Chiang CM, Tseng TH, Yu SM 2006 Interaction between rice MYBGA and the gibberellin response element controls tissue-specific sugar sensitivity of alpha-amylase genes. Plant Cell 18: 2326-2340.

Clifford SC, Arndt SK, Popp M, Jones HG 2002 Mucilages and polysaccharides in Ziziphus species (Rhamnaceae): localization, composition and physiological roles during drought-stress. J. Exp. Bot. 53: 131-138.

Colleoni C, Dauvillee D, Mouille G, Buleon A, Gallant D, Bouchet B, Morell M, Samuel M, Delrue B, d'Hulst C, Bliard C, Nuzillard JM, Ball S 1999 Genetic and biochemical evidence for the involvement of alpha-1,4 glucanotransferases in amylopectin synthesis. Plant Physiol. 120: 993-1004.

Coruzzi GM, Zhou L 2001 Carbon and nitrogen sensing and signaling in plants: emerging Îmatrix effectsâ. Curr. Opin. Plant Biol. 4: 247-253.

daSilva PMFR, Eastmond PJ, Hill LM, Smith AM, Rawsthorne S 1997 Starch metabolism in developing embryos of oilseed rape. Planta 203: 480-487.

Davy A, Srensen MB, Svendsen I, Cameron-Mills V, Simpson DJ 2000 Prediction of protein cleavage sites by the barley cysteine endoproteases EP-A and EP-B based on the kinetics of synthetic peptide hydrolysis. Plant Physiol. 122: 137-146.

de la Fuente van Bentem S, Roitinger E, Anrather D, Csaszar E, Hirt H 2006 Phosphoproteomics as a tool to unravel plant regulatory mechanisms. Physiol. Plant. 126: 110-119.

Delatte T, Trevisan M, Parker ML, Zeeman SC 2005 Arabidopsis mutants Atisa1 and Atisa2 have identical phenotypes and lack the same multimeric isoamylase, which influences the branch point distribution of amylopectin during starch synthesis. Plant J. 41: 815-830.

Dinges JR, Colleoni C, James MG, Myers AM 2003 Mutational analysis of the pullulanase-type debranching enzyme of maize indicates multiple functions in starch metabolism. Plant Cell 15: 666-680.

Dodd AN, Griffiths H, Taybi T, Cushman JC, Borland AM 2003 Integrating diel starch metabolism with the circadian and environmental regulation of Crassulacean acid metabolism in Mesembryanthemum crystallinum. Planta 216: 789-797.

Doyle EA, Lane AM, Sides JM, Mudgett MB, Monroe JD 2007 An alpha-amylase (At4g25000) in Arabidopsis leaves is secreted and induced by biotic and abiotic stress. Plant Cell Environ. 30: 388-398.

Duan M, Sun SS 2005 Profiling the expression of genes controlling rice grain quality. Plant Mol. Biol. 59: 165-178.

Ellerstrom M, Reidt W, Ivanov R, Tiedemann J, Melzer M, Tewes A, Moritz T, Mock HP, Sitbon F, Rask L, Baumlein H 2005 Ectopic expression of EFFECTOR OF TRANSCRIPTION perturbs gibberellin-mediated plant developmental processes. Plant Mol. Biol. 59: 663-681.

Erkkila MJ, Leah R, Ahokas H, Cameron-Mills V 1998 Allele-dependent barley grain beta-amylase activity. Plant Physiol. 117: 679-685.

Finnie C, Melchior S, Roepstorff P, Svensson B 2002 Proteome analysis of grain filling and seed maturation in barley. Plant Physiol. 129: 1308-1319.

Franco OL, Rigden DJ, Melo FR, Grossi-De-Sa MF 2002 Plant alpha-amylase inhibitors and their interaction with insect alpha-amylases. Eur. J. Biochem. 269: 397-412.

Fridborg I, Kuusk S, Robertson M, Sundberg E 2001 The Arabidopsis protein SHI represses gibberellin responses in Arabidopsis and barley. Plant Physiol. 127: 937-948.

Fu X, Richards DE, Ait-Ali T, Hynes LW, Ougham H, Peng J, Harberd NP 2002 Gibberellin-mediated proteasome-dependent degradation of the barley DELLA protein SLN1 repressor. Plant Cell 14: 3191-3200.

Fujita N, Kubo A, Francisco PB Jr, Nakakita M, Harada K, Minaka N, Nakamura Y 1999 Purification, characterization, and cDNA structure of isoamylase from developing endosperm of rice. Planta 208: 283-293.

Furtado A, Henry R, Scott K, Meech S 2003 The promoter of the asi gene directs expression in the maternal tissues of the seed in transgenic barley. Plant Mol. Biol. 52: 787-799.

Fux C, Fussenegger M 2003 Toward higher order control modalities in mammalian cells-independent adjustment of two different gene activities. Biotechnol. Prog. 19: 109-120.

Gallie DR, Young TE 1994 The regulation of gene expression in transformed maize aleurone and endosperm protoplasts. Analysis of promoter activity, intron enhancement, and mRNA untranslated regions on expression. Plant Physiol. 106: 929-939.

Gana JA, Kalengamaliro NE, Cunningham SM, Volenec JJ 1998 Expression of beta-amylase from alfalfa taproots. Plant Physiol. 118: 1495-1506.

Geigenberger P, Hajirezaei M, Geiger M, Deiting U, Sonnewald U, Stitt M 1998 Overexpression of pyrophosphatase leads to increased sucrose degradation and starch synthesis, increased activities of enzymes for sucrose-starch interconversions, and increased levels of nucleotides in growing potato tubers. Planta 205: 428-437.

Genschel U, Abel G, Lorz H, Lutticke S 2002 The sugary-type isoamylase in wheat: tissue distribution and subcellular localisation. Planta 214: 813-820.

Ghiena C, Schulz M, Schnabl H 1993 Starch degradation and distribution of the starch-degrading enzymes in Vicia faba leaves. Diurnal oscillation of amylolytic activity and starch content in chloroplasts. Plant Physiol. 101: 73-79.

Gibson SI 2004 Sugar and phytohormone response pathways: navigating a signalling network. J. Exp. Bot. 55: 253-264.

Gocal GF, Sheldon CC, Gubler F, Moritz T, Bagnall DJ, MacMillan CP, Li SF, Parish RW, Dennis ES, Weigel D, King RW 2001 GAMYB-like genes, flowering, and gibberellin signaling in Arabidopsis. Plant Physiol. 127: 1682-1693.

Goud KV, Sharma R 1994 Retention of photoinduction of cytosolic enzymes in aurea mutant of tomato (Lycopersicon esculentum). Plant Physiol. 105: 643-650.

Graves LM, Switzer RL 1990 Aspartokinase II from Bacillus subtilis is degraded in response to nutrient limitation. J. Biol. Chem. 265: 14947-14955.

Grill E, Himmelbach A 1998 ABA signal transduction. Curr. Opin. Plant Biol. 1: 412-418.

Grosset J, Alary R, Gautier MF, Menossi M, Martinez-Izquierdo JA, Joudrier P 1997 Characterization of a barley gene coding for an alpha-amylase inhibitor subunit (CMd protein) and analysis of its promoter in transgenic tobacco plants and in maize kernels by microprojectile bombardment. Plant Mol. Biol. 34: 331-338.

Grossi de Sa MF, Mirkov TE, Ishimoto M, Colucci G, Bateman KS, Chrispeels MJ 1997 Molecular characterization of a bean alpha-amylase inhibitor that inhibits the alpha-amylase of the mexican bean weevil Zabrotes subfasciatus. Planta 203: 295-303.

Guan HP, Preiss J 1993 Differentiation of the properties of the branching isozymes from maize (Zea mays). Plant Physiol. 102: 1269-1273.

Gubler F, Chandler PM, White RG, Llewellyn DJ, Jacobsen JV 2002 Gibberellin signaling in barley aleurone cells. Control of SLN1 and GAMYB expression. Plant Physiol. 129: 191-200.

Halford NG, Paul MJ 2003 Carbon metabolite sensing and signalling. Plant Biotechnol. J. 1: 381-398.

Hamada S, Ito H, Ueno H, Takeda Y, Matsui H 2007 The N-terminal region of the starch-branching enzyme from Phaseolus vulgaris L. is essential for optimal catalysis and structural stability. Phytochemistry 68: 1367-1375.

Hanson J, Johannesson H, Engstrom P 2001 Sugar-dependent alterations in cotyledon and leaf development in transgenic plants expressing the HDZhdip gene ATHB13. Plant Mol. Biol. 45: 247-262.

Hausler RE, Schlieben NH, Nicolay P, Fischer K, Fischer KL, Flugge UI 2000 Control of carbon partitioning and photosynthesis by the triose phosphate/phosphate translocator in transgenic tobacco plants (Nicotiana tabacumL.). I. Comparative · Planta 210: 371-382.

Hausler RE, Schlieben NH, Schulz B, Flugge UI 1998 Compensation of decreased triose phosphate/phosphate translocator activity by accelerated starch turnover and glucose transport in transgenic tobacco. Planta 204: 366-376.

Hillmer S, Gilroy S, Jones RL 1993 Visualizing enzyme secretion from individual barley (Hordeum vulgare) aleurone protoplasts. Plant Physiol. 102: 279-286.

Ho SL, Chao YC, Tong WF, Yu SM 2001 Sugar coordinately and differentially regulates growth- and stress-related gene expression via a complex signal transduction network and multiple control mechanisms. Plant Physiol. 125: 877-890.

Hussain H, Mant A, Seale R, Zeeman S, Hinchliffe E, Edwards A, Hylton C, Bornemann S, Smith AM, Martin C, Bustos R 2003 Three isoforms of isoamylase contribute different catalytic properties for the debranching of potato glucans. Plant Cell 15: 133-149.

Hwang YS, Bethke PC, Gubler F, Jones RL 2003 cPrG-HCl a potential H+/Cl- symporter prevents acidification of storage vacuoles in aleurone cells and inhibits GA-dependent hydrolysis of storage protein and phytate. Plant J. 35: 154-163.

Hwang YS, Karrer EE, Thomas BR, Chen L, Rodriguez RL 1998 Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation. Plant Mol. Biol. 36: 331-341.

Hwang YS, Thomas BR, Rodriguez RL 1999 Differential expression of rice alpha-amylase genes during seedling development under anoxia. Plant Mol. Biol. 40: 911-920.

Ishimoto M, Chrispeels MJ 1996 Protective mechanism of the Mexican bean weevil against high levels of alpha-amylase inhibitor in the common bean. Plant Physiol. 111: 393-401.

Jones HD, Smith SJ, Desikan R, Plakidou-Dymock S, Lovegrove A, Hooley R 1998 Heterotrimeric G proteins are implicated in gibberellin induction of a-amylase gene expression in wild oat aleurone. Plant Cell 10: 245-254.

Jung SH, Lee JY, Lee DH 2003 Use of SAGE technology to reveal changes in gene expression in Arabidopsis leaves undergoing cold stress. Plant Mol. Biol. 52: 553-567.

Kaneko M, Inukai Y, Ueguchi-Tanaka M, Itoh H, Izawa T, Kobayashi Y, Hattori T, Miyao A, Hirochika H, Ashikari M, Matsuoka M 2004 Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development. Plant Cell 16: 33-44.

Kaneko M, Itoh H, Ueguchi-Tanaka M, Ashikari M, Matsuoka M 2002 The alpha-amylase induction in endosperm during rice seed germination is caused by gibberellin synthesized in epithelium. Plant Physiol. 128: 1264-1270.

Kaplan F, Guy CL 2004 {beta}-Amylase induction and the protective role of maltose during temperature shock. Plant Physiol. 135: 1674-1684.

Kaplan F, Guy CL 2005 RNA interference of Arabidopsis beta-amylase8 prevents maltose accumulation upon cold shock and increases sensitivity of PSII photochemical efficiency to freezing stress. Plant J. 44: 730-743.

Kaplan F, Sung DY, Guy CL 2006 Roles of beta-amylase and starch breakdown during temperatures stress. Physiol. Plant. 126: 120-128.

Kawagoe Y, Kubo A, Satoh H, Takaiwa F, Nakamura Y 2005 Roles of isoamylase and ADP-glucose pyrophosphorylase in starch granule synthesis in rice endosperm. Plant J. 42: 164-174.

King RW, Junttila O, Mander LN, Beck EJ 2004 Gibberellin structure and function: biological activity and competitive inhibition of gibberellin 2- and 3-oxidases. Physiol. Plant. 120: 287-297.

Kitahata N, Nakano T, Kuchitsu K, Yoshida S, Asami T 2005 Biotin-labeled abscisic acid as a probe for investigating abscisic acid binding sites on plasma membranes of barley aleurone protoplasts. Bioorg. Med. Chem. 13: 3351-3358.

Koger JB, Howell RG, Kelly M, Jones EE 1994 Purification and properties of porcine liver ornithine transcarbamylase. Arch. Biochem. Biophys. 309: 293-299.

Kong BW, Kim JI, Kim MJ, Kim JC 2003 Porcine pancreatic alpha-amylase hydrolysis of native starch granules as a function of granule surface area. Biotechnol. Prog. 19: 1162-1166.

Kubo A, Fujita N, Harada K, Matsuda T, Satoh H, Nakamura Y 1999 The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm. Plant Physiol. 121: 399-410.

Kubo A, Rahman S, Utsumi Y, Li Z, Mukai Y, Yamamoto M, Ugaki M, Harada K, Satoh H, Konik-Rose C, Morell M, Nakamura Y 2005 Complementation of sugary-1 phenotype in rice endosperm with the wheat isoamylase1 gene supports a direct role for isoamylase1 in amylopectin biosynthesis. Plant Physiol. 137: 43-56.

Kumar S, Satyanarayana T 2003 Purification and kinetics of a raw starch-hydrolyzing, thermostable, and neutral glucoamylase of the thermophilic mold Thermomucor indicae-seudaticae. Biotechnol. Prog. 19: 936-944.

Laby RJ, Kim D, Gibson SI 2001 The ram1 mutant of Arabidopsis exhibits severely decreased beta-amylase activity. Plant Physiol. 127: 1798-1807.

Laurie S, McKibbin RS, Halford NG 2003 Antisense SNF1-related (SnRK1) protein kinase gene represses transient activity of an alpha-amylase (alpha-Amy2) gene promoter in cultured wheat embryos. J. Exp. Bot. 54: 739-747.

Leborgne-Castel N, Jelitto-Van Dooren EP, Crofts AJ, Denecke J 1999 Overexpression of BiP in tobacco alleviates endoplasmic reticulum stress. Plant Cell 11: 459-470.

Lee JY, Lee DH 2003 Use of serial analysis of gene expression technology to reveal changes in gene expression in Arabidopsis pollen undergoing cold stress. Plant Physiol. 132: 517-529.

Li CY, Weiss D, Goldschmidt EE 2003 Effects of carbohydrate starvation on gene expression in citrus root. Planta 217: 11-20.

Li TH, Li SH 2005 Leaf responses of micropropagated apple plants to water stress: nonstructural carbohydrate composition and regulatory role of metabolic enzymes. Tree Physiol. 25: 495-504.

Liu YJ, Cheng CS, Lai SM, Hsu MP, Chen CS, Lyu PC 2006 Solution structure of the plant defensin VrD1 from mung bean and its possible role in insecticidal activity against bruchids. Proteins 63: 777-786.

Lloyd JR, Kossmann J, Ritte G 2005 Leaf starch degradation comes out of the shadows. Trends Plant Sci. 10: 130-137.

Loreti E, Alpi A, Perata P 2000 Glucose and disaccharide-sensing mechanisms modulate the expression of alpha-amylase in barley embryos. Plant Physiol. 123: 939-948.

Loreti E, Matsukura C, Gubler F, Alpi A, Yamaguchi J, Perata P 2000 Glucose repression of alpha-amylase in barley embryos is independent of GAMYB transcription. Plant Mol. Biol. 44: 85-90.

Loreti E, Yamaguchi J, Alpi A, Perata P 2003 Sugar modulation of alpha-amylase genes under anoxia. Ann. Bot. (Lond.) 91: 143-148.

Maathuis FJ 2006 cGMP modulates gene transcription and cation transport in Arabidopsis roots. Plant J. 45: 700-711.

Macedo ML, Garcia VA, Freire MG, Richardson M 2007 Characterization of a Kunitz trypsin inhibitor with a single disulfide bridge from seeds of Inga laurina (SW.) Willd. Phytochemistry 68: 1104-1111.

Maeda K, Finnie C, OStergaard O, Svensson B 2003 Identification, cloning and characterization of two thioredoxin h isoforms, HvTrxh1 and HvTrxh2, from the barley seed proteome. Eur. J. Biochem. 270: 2633-2643.

Maeo K, Tomiya T, Hayashi K, Akaike M, Morikami A, Ishiguro S, Nakamura K 2001 Sugar-responsible elements in the promoter of a gene for beta-amylase of sweet potato. Plant Mol. Biol. 46: 627-637.

Majoul T, Bancel E, Triboi E, Ben Hamida J, Branlard G 2004 Proteomic analysis of the effect of heat stress on hexaploid wheat grain: characterization of heat-responsive proteins from non-prolamins fraction. Proteomics 4: 505-513.

Malehorn DE, Borgmeyer JR, Smith CE, Shah DM 1994 Characterization and expression of an antifungal zeamatin-like protein (Zlp) gene from Zea mays. Plant Physiol. 106: 1471-1481.

Mena M, Cejudo FJ, Isabel-Lamoneda I, Carbonero P 2002 A role for the DOF transcription factor BPBF in the regulation of gibberellin-responsive genes in barley aleurone. Plant Physiol. 130: 111-119.

Miskell JA, Parmenter G, Eaton-Rye JJ 2002 Decreased Hill reaction rates and slow turnover of transitory starch in the obligate shade plant Panax quinquefolius L. (American ginseng). Planta 215: 969-979.

Mita S, Hirano H, Nakamura K 1997 Negative regulation in the expression of a sugar-inducible gene in Arabidopsis thaliana. A recessive mutation causing enhanced expression of a gene for beta-amylase. Plant Physiol. 114: 575-582.

Mita S, Murano N, Akaike M, Nakamura K 1997 Mutants of Arabidopsis thaliana with pleiotropic effects on the expression of the gene for beta-amylase and on the accumulation of anthocyanin that are inducible by sugars. Plant J. 11: 841-851.

Mita S, Suzuki-Fujii K, Nakamura K 1995 Sugar-inducible expression of a gene for beta-amylase in Arabidopsis thaliana. Plant Physiol. 107: 895-904.

Mitsui T, Yamaguchi J, Akazawa T 1996 Physicochemical and serological characterization of rice alpha-amylase isoforms and identification of their corresponding genes. Plant Physiol. 110: 1395-1404.

Mrva K, Wallwork M, Mares DJ 2006 alpha-Amylase and programmed cell death in aleurone of ripening wheat grains. J. Exp. Bot. 57: 877-885.

Muller C, McIntyre M, Hansen K, Nielsen J 2002 Metabolic engineering of the morphology of Aspergillus oryzae by altering chitin synthesis. Appl. Environ. Microbiol. 68: 1827-1836.

Muller R, Nilsson L, Nielsen LK, Nielsen TH 2005 Interaction between phosphate starvation signalling and hexokinase-independent sugar sensing in Arabidopsis leaves. Physiol. Plant. 124: 81-90.

Murata N, Los DA 2006 Histidine kinase Hik33 is an important participant in cold-signal transduction in cyanobacteria. Physiol. Plant. 126: 17-27.

Nakajima K 1991 Dimethyl-beta-propiothetin, new potent resistive-agent against stress-induced gastric ulcers in rats. J. Nutr. Sci. Vitaminol. (Tokyo) 37: 229-238.

Nakamura Y, Umemoto T, Ogata N, Kuboki Y, Yano M, Sasaki T 1996 Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: purification, cDNA and chromosomal localization of the gene. Planta 199: 209-218.

Nakayama A, Park S, Zheng-Jun X, Nakajima M, Yamaguchi I 2002 Immunohistochemistry of active gibberellins and gibberellin-inducible alpha-amylase in developing seeds of morning glory. Plant Physiol. 129: 1045-1053.

Nishi A, Nakamura Y, Tanaka N, Satoh H 2001 Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm. Plant Physiol. 127: 459-472.

Noquet C, Avice JC, Ourry A, Volenec JJ, Cunningham SM, Boucaud J 2001 Effects of environmental factors and endogenous signals on N uptake, N partitioning and taproot vegetative storage protein accumulation in Medicago sativa. Aust. J. Plant Physiol. 28: 279-287.

Nuutila AM, Ritala A, Skadsen RW, Mannonen L, Kauppinen V 1999 Expression of fungal thermotolerant endo-1,4-beta-glucanase in transgenic barley seeds during germination. Plant Mol. Biol. 41: 777-783.

Pandey R, Agarwal RM, Jeevaratnam K, Sharma GL 2004 Osmotic stress-induced alterations in rice (Oryza sativa L.) and recovery on stress release. Plant Growth Regul. 42: 79-87.

Pedersen H, Carlsen M, Nielsen J 1999 Identification of enzymes and quantification of metabolic fluxes in the wild type and in a recombinant Aspergillus oryzae strain. Appl. Environ. Microbiol. 65: 11-19.

Pedersen H, Christensen B, Hjort C, Nielsen J 2000 Construction and characterization of an oxalic acid nonproducing strain of Aspergillus niger. Metab. Eng. 2: 34-41.

Pimpl P, Hanton SL, Taylor JP, Pinto-DaSilva LL, Denecke J 2003 The GTPase ARF1p controls the sequence-specific vacuolar sorting route to the lytic vacuole. Plant Cell 15: 1242-1256.

Posewitz MC, Smolinski SL, Kanakagiri S, Melis A, Seibert M, Ghirardi ML 2004 Hydrogen photoproduction is attenuated by disruption of an isoamylase gene in Chlamydomonas reinhardtii. Plant Cell 16: 2151-2163.

Rahman A, Wong Ks, Jane Jl, Myers AM, James MG 1998 Characterization of SU1 isoamylase, a determinant of storage starch structure in maize. Plant Physiol. 117: 425-435.

Ramon M, Rolland F, Thevelein JM, Van Dijck P, Leyman B 2007 ABI4 mediates the effects of exogenous trehalose on Arabidopsis growth and starch breakdown. Plant Mol. Biol. 63: 195-206.

Rinne PL, Kaikuranta PL, van der Plas LH, van der Schoot C 1999 Dehydrins in cold-acclimated apices of birch (Betula pubescens Ehrh.): production, localization and potential role in rescuing enzyme function during dehydration. Planta 209: 377-388.

Ritchie S, Gilroy S 2000 Abscisic acid stimulation of phospholipase D in the barley aleurone is G-protein-mediated and localized to the plasma membrane. Plant Physiol. 124: 693-702.

Ritchie S, McCubbin A, Ambrose G, Kao Th, Gilroy S 1999 The sensitivity of barley aleurone tissue to gibberellin is heterogeneous and may be spatially determined. Plant Physiol. 120: 361-370.

Ritte G, Scharf A, Eckermann N, Haebel S, Steup M 2004 Phosphorylation of transitory starch is increased during degradation. Plant Physiol. 135: 2068-2077.

Robert X, Haser R, Mori H, Svensson B, Aghajari N 2005 Oligosaccharide binding to barley alpha-amylase 1. J. Biol. Chem. 280: 32968-32978.

Robertson M 2004 Two transcription factors are negative regulators of gibberellin response in the HvSPY-signaling pathway in barley aleurone. Plant Physiol. 136: 2747-2761.

Robertson M, Swain SM, Chandler PM, Olszewski NE 1998 Identification of a negative regulator of gibberellin action, HvSPY, in barley. Plant Cell 10: 995-1007.

Rogers JC, Lanahan MB, Rogers SW 1994 The cis-acting gibberellin response complex in high pI alpha-amylase gene promoters. Requirement of a coupling element for high-level transcription. Plant Physiol. 105: 151-158.

Rogers SW, Rogers JC 1999 Cloning and characterization of a gibberellin-induced RNase expressed in barley aleurone cells. Plant Physiol. 119: 1457-1464.

Rubio-Somoza I, Martinez M, Abraham Z, Diaz I, Carbonero P 2006 Ternary complex formation between HvMYBS3 and other factors involved in transcriptional control in barley seeds. Plant J. 47: 269-281.

Rubio-Somoza I, Martinez M, Diaz I, Carbonero P 2006 HvMCB1, a R1MYB transcription factor from barley with antagonistic regulatory functions during seed development and germination. Plant J. 45: 17-30.

Saha BC, Nakamura LK 2003 Production of mannitol and lactic acid by fermentation with Lactobacillus intermedius NRRL B-3693. Biotechnol. Bioeng. 82: 864-871.

Sanchez-Hernandez C, Martinez-Gallardo N, Guerrero-Rangel A, Valdes-Rodriguez S, Delano-Frier J 2004 Trypsin and alpha-amylase inhibitors are differentially induced in leaves of amaranth (Amaranthus hypochondriacus) in response to biotic and abiotic stress. Physiol. Plant. 122: 254-264.

Santerre Henriksen AL, Even S, Muller C, Punt PJ, van den Hondel CA, Nielsen J 1999 Study of the glucoamylase promoter in Aspergillus niger using green fluorescent protein. Microbiology 145: 729-734.

Scaglia F, Carter S, O'Brien WE, Lee B 2004 Effect of alternative pathway therapy on branched chain amino acid metabolism in urea cycle disorder patients. Mol. Genet. Metab. 81: S79-S85.

Scheidig A, Frohlich A, Schulze S, Lloyd JR, Kossmann J 2002 Downregulation of a chloroplast-targeted beta-amylase leads to a starch-excess phenotype in leaves. Plant J. 30: 581-591.

Schluter U, Kopke D, Altmann T, Mussig C 2002 Analysis of carbohydrate metabolism of CPD antisense plants and the brassinosteroid-deficient cbb1 mutant. Plant Cell Environ. 25: 783-791.

Schmidt K, Marx A, de Graaf AA, Wiechert W, Sahm H, Nielsen J, Villadsen J 1998 13C tracer experiments and metabolite balancing for metabolic flux analysis: comparing two approaches. Biotechnol. Bioeng. 58: 254-257.

Schmidt K, Norregaard LC, Pedersen B, Meissner A, Duus JO, Nielsen JO, Villadsen J 1999 Quantification of intracellular metabolic fluxes from fractional enrichment and 13C-13C coupling constraints on the isotopomer distribution in labeled biomass components. Metab. Eng. 1: 166-179.

Shen Q, Gomez-Cadenas A, Zhang P, Walker-Simmons MK, Sheen J, Ho TH 2001 Dissection of abscisic acid signal transduction pathways in barley aleurone layers. Plant Mol. Biol. 47: 437-448.

Shewmaker CK, Boyer CD, Wiesenborn DP, Thompson DB, Boersig MR, Oakes JV, Stalker DM 1994 Expression of Escherichia coli glycogen synthase in the tubers of transgenic potatoes (Solanum tuberosum) results in a highly branched starch. Plant Physiol. 104: 1159-1166.

Shi D, Morizono H, Aoyagi M, Tuchman M, Allewell NM 2000 Crystal structure of human ornithine transcarbamylase complexed with carbamoyl phosphate and L-norvaline at 1.9 A resolution. Proteins 39: 271-277.

Shi D, Morizono H, Yu X, Roth L, Caldovic L, Allewell NM, Malamy MH, Tuchman M 2000 Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria. J. Biol. Chem. 280: 14366-14369 (2005 ).

Skadsen RW 1993 Aleurones from a barley with low [alpha]-amylase activity become highly responsive to gibberellin when detached from the starchy endosperm. Plant Physiol. 102: 195-203.

Smith AM, Zeeman SC, Smith SM 2005 Starch degradation. Annu. Rev. Plant Biol. 56: 73-98.

Soriano R, Bautista LF, Martinez M, Aracil J 2003 Use of a diffusion model for mono- and bicomponent anion-exchange of two isoenzymes of glucoamylase from Aspergillus niger in a fixed bed. Biotechnol. Prog. 19: 1283-1291.

Sousa-Majer MJ, Turner NC, Hardie DC, Morton RL, Lamont B, Higgins TJ 2004 Response to water deficit and high temperature of transgenic peas (Pisum sativum L.) containing a seed-specific alpha-amylase inhibitor and the subsequent effects on pea weevil (Bruchus pisorum L.) survival. J. Exp. Bot. 55: 497-505.

Sparla F, Costa A, Lo Schiavo F, Pupillo P, Trost P 2006 Redox regulation of a novel plastid-targeted beta-amylase of Arabidopsis. Plant Physiol. 141: 840-850.

Srivenugopal KS, Adiga PR 1981 Enzymic conversion of agmatine to putrescine in Lathyrus sativus seedlings. Purification and properties of a multifunctional enzyme (putrescine synthase). J. Biol. Chem. 256: 9532-9541.

Stahl Y, Coates S, Bryce JH, Morris PC 2004 Antisense downregulation of the barley limit dextrinase inhibitor modulates starch granule size distribution, starch composition and amylopectin structure. Plant J. 39: 599-611.

Stebbins JW, Xu W, Kantrowitz ER 1989 Three residues involved in binding and catalysis in the carbamyl phosphate binding site of Escherichia coli aspartate transcarbamylase. Biochemistry 28: 2592-2600.

Sun C, Sathish P, Ahlandsberg S, Jansson C 1998 The two genes encoding starch-branching enzymes IIa and IIb are differentially expressed in barley. Plant Physiol. 118: 37-49.

Sun C, Sathish P, Ahlandsberg S, Jansson C 1999 Analyses of isoamylase gene activity in wild-type barley indicate its involvement in starch synthesis. Plant Mol. Biol. 40: 431-443.

Sun K, Camardella L, Di Prisco G, Herve G 1998 Properties of aspartate transcarbamylase from TAD1, a psychrophilic bacterial strain isolated from Antarctica. FEMS Microbiol. Lett. 164: 375-382.

Sutoh K, Yamauchi D 2003 Two cis-acting elements necessary and sufficient for gibberellin-upregulated proteinase expression in rice seeds. Plant J. 34: 635-645.

Suzuki N, Mittler R 2006 Reactive oxygen species and temperature stresses: a delicate balance between signaling and destruction. Physiol. Plant. 126: 45-51.

Teles RC, de Souza EM, Calderon Lde A, de Freitas SM 2004 Purification and pH stability characterization of a chymotrypsin inhibitor from Schizolobium parahyba seeds. Phytochemistry 65: 793-799.

Thomas A, Hinsen K, Field MJ, Perahia D 1999 Tertiary and quaternary conformational changes in aspartate transcarbamylase: a normal mode study. Proteins 34: 96-112.

Toyofuku K, Loreti E, Vernieri P, Alpi A, Perata P, Yamaguchi J 2000 Glucose modulates the abscisic acid-inducible Rab16A gene in cereal embryos. Plant Mol. Biol. 42: 451-460.

Uchiyama K, Shioya S 1999 Modeling and optimization of a-amylase production in a recombinant yeast fed-batch culture taking into account of the cell cycle population distribution. J. Biotechnol. 71: 133-141.

Uemura M, Tominaga Y, Nakagawara C, Shigematsu S, Minami A, Kawamura Y 2006 Responses of the plasma membrane to low temperatures. Physiol. Plant. 126: 81-89.

Uno-Okamura K, Soga K, Wakabayashi K, Kamisaka S, Hoson T 2004 Purification and properties of apoplastic amylase from oat (Avena sativa) seedlings. Physiol. Plant. 121: 117-123.

Utsumi Y, Nakamura Y 2006 Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm. Planta 225: 75-87.

Vikso-Nielsen A, Blennow A, Hamborg Nielsen T, Lindberg Moller B 1998 Phosphorylated alpha(1-->4)glucans as substrate for potato starch-branching enzyme I. Plant Physiol. 117: 869-875.

Waghorn JJ, del Pozo T, Acevedo EA, Cardemil LA 2003 The role of two isoenzymes of alpha-amylase of Araucaria araucana (Araucariaceae) on the digestion of starch granules during germination. J. Exp. Bot. 54: 901-911.

Wakabayashi Y 1998 Tissue-selective expression of enzymes of arginine synthesis. Curr. Opin. Clin. Nutr. Metab. Care 1: 335-339.

Wang Q, Monroe J, Sjolund RD 1995 Identification and characterization of a phloem-specific beta-amylase. Plant Physiol. 109: 743-750.

Wang SM, Lue WL, Wu SY, Huang HW, Chen J 1997 Characterization of a maize beta-amylase cDNA clone and its expression during seed germination. Plant Physiol. 113: 403-409.

Wattebled F, Dong Y, Dumez S, Delvalle D, Planchot V, Berbezy P, Vyas D, Colonna P, Chatterjee M, Ball S, D'Hulst C 2005 Mutants of Arabidopsis lacking a chloroplastic isoamylase accumulate phytoglycogen and an abnormal form of amylopectin. Plant Physiol. 138: 184-195.

Wei H, Dhanaraj AL, Rowland LJ, Fu Y, Krebs SL, Arora R 2005 Comparative analysis of expressed sequence tags from cold-acclimated and non-acclimated leaves of Rhododendron catawbiense Michx. Planta 221: 406-416.

Weise SE, Kim KS, Stewart RP, Sharkey TD 2005 beta-Maltose is the metabolically active anomer of maltose during transitory starch degradation. Plant Physiol. 137: 756-761.

Weyman PD, Pan Z, Feng Q, Gilchrist DG, Bostock RM 2006 A circadian rhythm-regulated tomato gene is induced by arachidonic acid and Phythophthora infestans infection. Plant Physiol. 140: 235-248.

Wingler A, Fritzius T, Wiemken A, Boller T, Aeschbacher RA 2000 Trehalose induces the ADP-glucose pyrophosphorylase gene, ApL3, and starch synthesis in Arabidopsis. Plant Physiol. 124: 105-114.

Wischmann B, Hamborg Nielsen T, Lindberg Moller B 1999 In vitro biosynthesis of phosphorylated starch in intact potato amyloplasts. Plant Physiol. 119: 455-462.

Woodger FJ, Gubler F, Pogson BJ, Jacobsen JV 2003 A Mak-like kinase is a repressor of GAMYB in barley aleurone. Plant J. 33: 707-717.

Xie Z, Zhang ZL, Hanzlik S, Cook E, Shen QJ 2007 Salicylic acid inhibits gibberellin-induced alpha-amylase expression and seed germination via a pathway involving an abscisic-acid-inducible WRKY gene. Plant Mol. Biol. 64: 293-303.

Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ 2006 Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J. 46: 231-242.

Yamada T, Moriyama R, Hattori K, Ishimoto M 2005 Isolation of two alpha-araylase inhibitor genes of tepary bean (Phaseolus acutifolius A. Gray) and their functional characterization in genetically engineered azuki bean. Plant Sci. 169: 502-511.

Yamakawa H, Hirose T, Kuroda M, Yamaguchi T 2007 Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Plant Physiol. 144: 258-277.

Yamauchi D, Zentella R, Ho D 2002 Molecular analysis of the barley (Hordeum vulgare L.) gene encoding the protein kinase PKABA1 capable of suppressing gibberellin action in aleurone layers. Planta 215: 319-326.

Yanagisawa H 2001 Agmatine deiminase from maize shoots: purification and properties. Phytochemistry 56: 643-647.

Yang J, Zhang J, Wang Z, Zhu Q 2001 Activities of starch hydrolytic enzymes and sucrose-phosphate synthase in the stems of rice subjected to water stress during grain filling. J. Exp. Bot. 52: 2169-2179.

Yoine M, Ohto MA, Onai K, Mita S, Nakamura K 2006 The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant J. 47: 49-62.

Yu TS, Zeeman SC, Thorneycroft D, Fulton DC, Dunstan H, Lue WL, Hegemann B, Tung SY, Umemoto T, Chapple A, Tsai DL, Wang SM, Smith AM, Chen J, Smith SM 2005 alpha-Amylase is not required for breakdown of transitory starch in Arabidopsis leaves. J. Biol. Chem. 280: 9773-9779.

Zeeman SC, Ap Rees T 1999 Changes in carbohydrate metabolism and assimilate export in starch-excess mutants of Arabidopsis. Plant Cell Environ. 22: 1445-1453.

Zeeman SC, Northrop F, Smith AM, Rees T 1998 A starch-accumulating mutant of Arabidopsis thaliana deficient in a chloroplastic starch-hydrolysing enzyme. Plant J. 15: 357-365.

Zeeman SC, Umemoto T, Lue WL, Au-Yeung P, Martin C, Smith AM, Chen J 1998 A mutant of Arabidopsis lacking a chloroplastic isoamylase accumulates both starch and phytoglycogen. Plant Cell 10: 1699-1712.

Zentella R, Yamauchi D, Ho THD 2002 Molecular dissection of the gibberellin/abscisic acid signaling pathways by transiently expressed RNA interference in barley aleurone cells. Plant Cell 14: 2289-2301.

Zhang H, Shen WB, Zhang W, Xu LL 2005 A rapid response of beta-amylase to nitric oxide but not gibberellin in wheat seeds during the early stage of germination. Planta 220: 708-716.

Zhang Z, Scharer JM, Moo-Young M 1997 Mathematical model for aerobic culture of a recombinant yeast. Bioprocess Engineering 17: 235-240.

Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ 2004 A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol. 134: 1500-1513.

Zhu ZP, Hylton CM, Rossner U, Smith AM 1998 Characterization of starch-debranching enzymes in pea embryos. Plant Physiol. 118: 581-590.

Number of references = 193