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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, ammonia transport

Abd-El Baki GK, Siefritz F, Man H-M, Weiner H, Kaldenhoff R, Kaiser WM 2000 Nitrate reductase in Zea mays L. under salinity. Plant Cell Environ. 23: 515-521.

Albrecht J, Norenberg MD 2006 Glutamine: a Trojan horse in ammonia neurotoxicity. Hepatology 44: 788-794.

Alloing G, Travers I, Sagot B, Le Rudulier D, Dupont L 2006 Proline betaine uptake in Sinorhizobium meliloti: characterization of Prb, an Opp-like ABC transporter regulated by both proline betaine and salinity stress. J. Bacteriol. 188: 6308-6317.

Amarasinghe BH, de Bruxelles GL, Braddon M, Onyeocha I, Forde BG, Udvardi MK 1998 Regulation of GmNRT2 expression and nitrate transport activity in roots of soybean (Glycine max). Planta 206: 44-52.

Andrade SL, Dickmanns A, Ficner R, Einsle O 2005 Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus. Proc. Natl. Acad. Sci. U.S.A. 102: 14994-14999.

Anthoni U, Christophersen C, Hougaard L, Nielsen PH 1991 Quaternay ammonium compounds in the biosphere - an example of a versatile adaptive strategy. Comp. Biochem. Physiol. [B] 99: 1-18.

Arcondeguy T, Huez I, Tillard P, Gangneux C, de Billy F, Gojon A, Truchet G, Kahn D 1997 The Rhizobium meliloti PII protein, which controls bacterial nitrogen metabolism, affects alfalfa nodule development. Genes Dev. 11: 1194-1206.

Austgen TR, Chen MK, Moore W, Souba WW 1991 Endotoxin and renal glutamine metabolism. Arch. Surg. 126: 23-27.

Avila C, Suarez M, Gomez-Maldonado J, Canovas F 2001 Spatial and temporal expression of two cytosolic glutamine synthetase genes in Scots pine: functional implications on nitrogen metabolism during early stages of conifer development. Plant J. 25: 93-102.

Bailly J, Debaud JC, Verner MC, Plassard C, Chalot M, Marmeisse R, Fraissinet-Tachet L 2007 How does a symbiotic fungus modulate expression of its host-plant nitrite reductase? New Phytol. 175: 155-165.

Barabas NK, Omarov RT, Erdei L, Lips SH 2000 Distribution of the Mo-enzymes aldehyde oxidase, xanthine dehydrogenase and nitrate reductase in maize (Zea mays L.) nodal roots as affected by nitrogen and salinity. Plant Sci. 155: 49-58.

Barragan I, Marcos I, Borrego S, Antinolo G 2005 Mutation screening of three candidate genes, ELOVL5, SMAP1 and GLULD1 in autosomal recessive retinitis pigmentosa. Int. J. Mol. Med. 16: 1163-1167.

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Becker D, Stanke R, Fendrik I, Frommer WB, Vanderleyden J, Kaiser WM, Hedrich R 2002 Expression of the NH(4)(+)-transporter gene LEAMT1;2 is induced in tomato roots upon association with N(2)-fixing bacteria. Planta 215: 424-429.

Becker TW, Carrayol E, Hirel B 2000 Glutamine synthetase and glutamate dehydrogenase isoforms in maize leaves: localization, relative proportion and their role in ammonium assimilation or nitrogen transport. Planta 211: 800-806.

Beitz E, Wu B, Holm LM, Schultz JE, Zeuthen T 2006 Point mutations in the aromatic/arginine region in aquaporin 1 allow passage of urea, glycerol, ammonia, and protons. Proc. Natl. Acad. Sci. U.S.A. 103: 269-274.

Betteridge PR, Ayling PD 1976 The regulation of glutamine transport and glutamine synthetase in Salmonella typhimurium. J. Gen. Microbiol. 96: 324-334.

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Bhattacharya J, Singh AK, Rai AN 2002 Isolation and characterization of a chlorate-resistant mutant (Clo- R) of the symbiotic cyanobacterium Nostoc ANTH: heterocyst formation and N(2)-fixation in the presence of nitrate, and evidence for separate nitrate and nitrite transport systems. Curr. Microbiol. 45: 99-104.

Bijlsma RJ, Lambers H 2000 A dynamic whole-plant model of integrated metabolism of nitrogen and carbon. 2. Balanced growth driven by C fluxes and regulated by signals from C and N substrate. Plant & Soil 220: 71-87.

Bijlsma RJ, Lambers H, Kooijman SALM 2000 A dynamic whole-plant model of integrated metabolism of nitrogen and carbon. 1. Comparative ecological implications of ammonium-nitrate interactions. Plant & Soil 220: 49-69.

Binda C, Bossi RT, Wakatsuki S, Arzt S, Coda A, Curti B, Vanoni MA, Mattevi A 2000 Cross-talk and ammonia channeling between active centers in the unexpected domain arrangement of glutamate synthase. Structure Fold. Des. 8: 1299-1308.

Blum V, Hollander-Czytko H, Voeste D 1997 The Closed Equilibrated Biological Aquatic System: general concept and aspects of botanical research. Planta 203 Suppl.: 201S-208S.

Bobbink R, Heil GW, Raessen MBAG 1992 Atmospheric deposition and canopy exchange processes in heathland ecosystems. Environ. Pollut. 75: 29-37.

Bonarius HP, Ozemre A, Timmerarends B, Skrabal P, Tramper J, Schmid G, Heinzle E 2001 Metabolic-flux analysis of continuously cultured hybridoma cells using (13)CO(2) mass spectrometry in combination with (13)C-lactate nuclear magnetic resonance spectroscopy and metabolite balancing. Biotechnol. Bioeng. 74: 528-538.

Breitkreuz KE, Shelp BJ, Fischer WN, Schwacke R, Rentsch D 1999 Identification and characterization of GABA, proline and quaternary ammonium compound transporters from Arabidopsis thaliana. FEBS Lett. 450: 280-284.

Britto DT, Kronzucker HJ 2001 Can unidirectional influx be measured in higher plants? A mathematical approach using parameters from efflux analysis. New Phytol. 150: 37-47.

Britto DT, Kronzucker HJ 2002 NH4+ toxicity in higher plants: a critical review. J. Plant Physiol. 159: 567-584.

Britto DT, Kronzucker HJ 2005 Nitrogen acquisition, PEP carboxylase, and cellular pH homeostasis: new views on old paradigms. Plant Cell Environ. 28: 1396-1409.

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Brugiere N, Dubois F, Masclaux C, Sangwan RS, Hirel B 2000 Immunolocalization of glutamine synthetase in senescing tobacco (Nicotiana tabacum L.) leaves suggests that ammonia assimilation is progressively shifted to the mesophyll cytosol. Planta 211: 519-527.

Camacho-Cristobal JJ, Gonzalez-Fontes A 2007 Boron deficiency decreases plasmalemma H+-ATPase expression and nitrate uptake, and promotes ammonium assimilation into asparagine in tobacco roots. Planta 226: 443-451.

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Cerezo M, Tillard P, Gojon A, Primo-Millo E, Garcia-Agustin P 2001 Characterization and regulation of ammonium transport systems in Citrus plants. Planta 214: 97-105.

Chaffei C, Pageau K, Suzuki A, Gouia H, Ghorbel MH, Masclaux-Daubresse C 2004 Cadmium toxicity induced changes in nitrogen management in Lycopersicon esculentum leading to a metabolic safeguard through an amino acid storage strategy. Plant Cell Physiol. 45: 1681-1693.

Chalot M, Blaudez D, Brun A 2006 Ammonia: a candidate for nitrogen transfer at the mycorrhizal interface. Trends Plant Sci. 11: 263-266.

Chen M, McClure JW 2000 Altered lignin composition in phenylalanine ammonia-lyase-inhibited radish seedlings: implications for seed-derived sinapoyl esters as lignin precursors. Phytochemistry 53: 365-370.

Chen P, Harcum SW 2006 Effects of elevated ammonium on glycosylation gene expression in CHO cells. Metab. Eng. 8: 123-132.

Chen TH, Murata N 2002 Enhancement of tolerance of abiotic stress by metabolic engineering of betaines and other compatible solutes. Curr. Opin. Plant Biol. 5: 250-257.

Chen ZH, Walker RP, Tecsi LI, Lea PJ, Leegood RC 2004 Phosphoenolpyruvate carboxykinase in cucumber plants is increased both by ammonium and by acidification, and is present in the phloem. Planta 219: 48-58.

Christie A, Butler M 1999 The adaptation of bhk cells to a non-ammoniagenic glutamate-based culture medium. Biotechnol. Bioeng. 64: 298-309.

Clark MB, Mills HA, Robacker CD, Latimer JG 2003 Influence of nitrate: ammonium ratios on growth and elemental concentration in two azalea cultivars. J. Plant Nutr. 26: 2503-2520.

Clegg S, Yu F, Griffiths L, Cole JA 2002 The roles of the polytopic membrane proteins NarK, NarU and NirC in Escherichia coli K-12: two nitrate and three nitrite transporters. Mol. Microbiol. 44: 143-155.

Coddington A 1976 Biochemical studies on the nit mutants of Neurospora crassa. Mol. Gen. Genet. 145: 195-206.

Coelho-Sampaio T, Ferreira ST, Castro Junior EJ, Vieyra A 1994 Betaine counteracts urea-induced conformational changes and uncoupling of the human erythrocyte Ca2+ pump. Eur. J. Biochem. 221: 1103-1110.

Colombo JP 1987 Urea cycle disorders, hyperammonemia and neurotransmitter changes. Enzyme 38: 214-219.

Connelly HM, Pelletier DA, Lu TY, Lankford PK, Hettich RL 2006 Characterization of pII family (GlnK1, GlnK2, and GlnB) protein uridylylation in response to nitrogen availability for Rhodopseudomonas palustris. Anal. Biochem. 357: 93-104.

Correa Garcia S, Bermudez Moretti M, Ramos E, Batlle A 1997 Carbon and nitrogen sources regulate delta-aminolevulinic acid and gamma-aminobutyric acid transport in Saccharomyces cerevisiae. Int. J. Biochem. Cell Biol. 29: 1097-1101.

Courchesne WE, Magasanik B 1983 Ammonia regulation of amino acid permeases in Saccharomyces cerevisiae. Mol. Cell Biol. 3: 672-683.

Cousins AB, Bloom AJ 2003 Influence of elevated CO2 and nitrogen nutrition on photosynthesis and nitrate photo-assimilation in maize (Zea mays L.). Plant Cell Environ. 26: 1525-1530.

Coutts G, Thomas G, Blakey D, Merrick M 2002 Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB. EMBO J. 21: 536-545.

Curthoys NP 2001 Role of mitochondrial glutaminase in rat renal glutamine metabolism. J. Nutr. 131 Suppl.: 2491S-2495S.

D'Apuzzo E, Rogato A, Simon-Rosin U, El Alaoui H, Barbulova A, Betti M, Dimou M, Katinakis P, Marquez A, Marini AM, Udvardi MK, Chiurazzi M 2004 Characterization of three functional high-affinity ammonium transporters in Lotus japonicus with differential transcriptional regulation and spatial expression. Plant Physiol. 134: 1763-1774.

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de Zamaroczy M 1998 Structural homologues P(II) and P(Z) of Azospirillum brasilense provide intracellular signalling for selective regulation of various nitrogen-dependent functions. Mol. Microbiol. 29: 449-463.

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Dichio B, Xiloyannis C, Sofo A, Montanaro G 2005 Osmotic regulation in leaves and roots of olive trees during a water deficit and rewatering. Tree Physiol. 26: 179-185.

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Javelle A, Morel M, Rodriguez-Pastrana BR, Botton B, Andre B, Marini AM, Brun A, Chalot M 2003 Molecular characterization, function and regulation of ammonium transporters (Amt) and ammonium-metabolizing enzymes (GS, NADP-GDH) in the ectomycorrhizal fungus Hebeloma cylindrosporum. Mol. Microbiol. 47: 411-430.

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Number of references = 336

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