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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
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References
HORT640 - Metabolic Plant Physiology

References, aldolase

Abell LM, Schloss JV 1991 Oxygenase side reactions of acetolactate synthase and other carbanion-forming enzymes. Biochemistry 30: 7883-7887.

Akhtar M, El-Obeid HA, Jordan PM 1975 Mechanistic, inhibitory and stereochemical studies on cytoplasmic and mitochondrial serine transhydroxymethylases. Biochem. J. 145: 159-168.

Albrecht G, Mustroph A, Fox TC 2004 Sugar and fructan accumulation during metabolic adjustment between respiration and fermentation under low oxygen conditions in wheat roots. Physiol. Plant. 120: 93-105.

Ali M, Rellos P, Cox TM 1998 Hereditary fructose intolerance. J. Med. Genet. 35: 353-365.

Alkharouf NW, Klink VP, Chouikha IB, Beard HS, Macdonald MH, Meyer S, Knap HT, Khan R, Matthews BF 2006 Timecourse microarray analyses reveal global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode). Planta 224: 838-852.

Altintas MM, Eddy CK, Zhang M, McMillan JD, Kompala DS 2006 Kinetic modeling to optimize pentose fermentation in Zymomonas mobilis. Biotechnol. Bioeng. 94: 273-295.

Anderson LE, Carol AA 2005 Enzyme co-localization in the pea leaf cytosol: 3-P-glycerate kinase, glyceraldehyde-3-P dehydrogenase, triose-P isomerase and aldolase. Plant Sci. 169: 620-628.

Anderson LE, Goldhaber-Gordon IM, Li D, Tang XY, Xiang M, Prakash N 1995 Enzyme-enzyme interaction in the chloroplast: glyceraldehyde-3-phosphate dehydrogenase, triose phosphate isomerase and aldolase. Planta 196: 245-255.

Anderson LE, Wang X, Gibbons JT 1995 Three enzymes of carbon metabolism or their antigenic analogs in pea leaf nuclei. Plant Physiol. 108: 659-667.

Andrews DL, MacAlpine DM, Johnson JR, Kelley PM, Cobb BG, Drew MC 1994 Differential induction of mRNAs for the glycolytic and ethanolic fermentative pathways by hypoxia and anoxia in maize seedlings. Plant Physiol. 106: 1575-1582.

Angeles Castillejo M, Amiour N, Dumas-Gaudot E, Rubiales D, Jorrin JV 2004 A proteomic approach to studying plant response to crenate broomrape (Orobanche crenata) in pea (Pisum sativum). Phytochemistry 65: 1817-1828.

Azama K, Abe S, Sugimoto H, Davies E 2003 Lysine-containing proteins in maize endosperm: a major contribution from cytoskeleton-associated carbohydrate-metabolizing enzymes. Planta 217: 628-638.

Bakker BM, Michels PAM, Opperdoes FR, Westerhoff HV 1997 Glycolysis in bloodstream form Trypanosoma brucei can be understood in terms of the kinetics of the glycolytic enzymes. J. Biol. Chem. 272: 3207-3215.

Bakker BM, Westerhoff HV, Opperdoes FR, Michels PA 2000 Metabolic control analysis of glycolysis in trypanosomes as an approach to improve selectivity and effectiveness of drugs. Mol. Biochem. Parasitol. 106: 1-10.

Bardey V, Vallet C, Robas N, Charpentier B, Thouvenot B, Mougin A, Hajnsdorf E, Regnier P, Springer M, Branlant C 2005 Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli. Mol. Microbiol. 57: 1265-1287.

Bendt AK, Burkovski A, Schaffer S, Bott M, Farwick M, Hermann T 2003 Towards a phosphoproteome map of Corynebacterium glutamicum. Proteomics 3: 1637-1646.

Breuer M, Hauer B 2003 Carbon-carbon coupling in biotransformation. Curr. Opin. Biotechnol. 14: 570-576.

Broeckling CD, Huhman DV, Farag MA, Smith JT, May GD, Mendes P, Dixon RA, Sumner LW 2005 Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. J. Exp. Bot. 56: 323-336.

Caillau M, Paul Quick W 2005 New insights into plant transaldolase. Plant J. 43: 1-16.

Chen L, Spiliotis ET, Roberts MF 1998 Biosynthesis of di-myo-inositol-1,1'-phosphate, a novel osmolyte in hyperthermophilic archaea. J. Bacteriol. 180: 3785-3792.

Christensen B, Nielsen J 2000 Metabolic network analysis of Penicillium chrysogenum using 13C-labeled glucose. Biotechnol. Bioeng. 68: 652-659.

Chung YL, Rider LG, Bell JD, Summers RM, Zemel LS, Rennebohm RM, Passo MH, Hicks J, Miller FW, Scott DL; Juvenile Dermatomyositis Disease Activity Collaborative Study Group 2005 Muscle metabolites, detected in urine by proton spectroscopy, correlate with disease damage in juvenile idiopathic inflammatory myopathies. Arthritis Rheum. 53: 565-570.

Contestabile R, Paiardini A, Pascarella S, di Salvo ML, D'Aguanno S, Bossa F 2001 L-Threonine aldolase, serine hydroxymethyltransferase and fungal alanine racemase. A subgroup of strictly related enzymes specialized for different functions. Eur. J. Biochem. 268: 6508-6525.

de Graaf AA, Striegel K, Wittig RM, Laufer B, Schmitz G, Wiechert W, Sprenger GA, Sahm H 1999 Metabolic state of Zymomonas mobilis in glucose-, fructose-, and xylose-fed continuous cultures as analysed by 13C- and 31P-NMR spectroscopy. Arch. Microbiol. 171: 371-385.

Dennis ES, Gerlach WL, Walker JC, Lavin M, Peacock WJ 1988 Anaerobically regulated aldolase gene of maize. A chimaeric origin? J. Mol. Biol. 202: 759-767.

Dieuaide-Noubhani M, Raffard G, Canioni P, Pradet A, Raymond P 1995 Quantification of compartmented metabolic fluxes in maize root tips using isotope distribution from 13C- or 14C-labeled glucose. J. Biol. Chem. 270: 13147-13159.

Eicks M, Maurino V, Knappe S, Flugge UI, Fischer K 2002 The plastidic pentose phosphate translocator represents a link between the cytosolic and the plastidic pentose phosphate pathways in plants. Plant Physiol. 128: 512-522.

Eppler T, Postma P, Schutz A, Volker U, Boos W 2002 Glycerol-3-phosphate-induced catabolite repression in Escherichia coli. J. Bacteriol. 184: 3044-3052.

Famiani F, Walker RP, Tecsi L, Chen ZH, Proietti P, Leegood RC 2000 An immunohistochemical study of the compartmentation of metabolism during the development of grape (Vitis vinifera L.) berries. J. Exp. Bot. 51: 675-683.

Follstad BD, Stephanopoulos G 1998 Effect of reversible reactions on isotope label redistribution--analysis of the pentose phosphate pathway. Eur. J. Biochem. 252: 360-371.

Fridlyand LE, Backhausen JE, Scheibe R 1999 Homeostatic regulation upon changes of enzyme activities in the Calvin cycle as an example for general mechanisms of flux control. What can we expect from transgenic plants? Photosynth. Res. 61: 227-239.

Fukao T, Kennedy RA, Yamasue Y, Rumpho ME 2003 Genetic and biochemical analysis of anaerobically-induced enzymes during seed germination of Echinochloa crus-galli varieties tolerant and intolerant of anoxia. J. Exp. Bot. 54: 1421-1429.

Geiger M, Haake V, Ludewig F, Sonnewald U, Stitt M 1999 The nitrate and ammonium nitrate supply have a major influence on the response of photosynthesis, carbon metabolism, nitrogen metabolism and growth to elevated carbon dioxide in tobacco. Plant Cell Environ. 22: 1177-1199.

Giacomelli L, Rudella A, van Wijk KJ 2006 High light response of the thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol. 141: 685-701.

Giege P, Heazlewood JL, Roessner-Tunali U, Millar AH, Fernie AR, Leaver CJ, Sweetlove LJ 2003 Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Plant Cell 15: 2140-2151.

Givan CV 1999 Evolving concepts in plant glycolysis: two centuries of progress. Biol. Rev. Camb. Phil. Soc. 74: 277-309.

Gleixner G, Danier HJ, Werner RA, Schmidt HL 1993 Correlations between the 13C content of primary and secondary plant products in different cell compartments and that in decomposing Basidiomycetes. Plant Physiol. 102: 1287-1290.

Gombert AK, Moreira dos Santos M, Christensen B, Nielsen J 2001 Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression. J. Bacteriol. 183: 1441-1451.

Gomes RA, Miranda HV, Silva MS, Graca G, Coelho AV, Ferreira AE, Cordeiro C, Freire AP 2006 Yeast protein glycation in vivo by methylglyoxal. FEBS J. 273: 5273-5287.

Goyer A, Illarionova V, Roje S, Fischer M, Bacher A, Hanson AD 2004 Folate biosynthesis in higher plants. cDNA cloning, heterologous expression, and characterization of dihydroneopterin aldolases. Plant Physiol. 135: 103-111.

Haake V, Zrenner R, Sonnewald U, Stitt M 1998 A moderate decrease of plastid aldolase activity inhibits photosynthesis, alters the levels of sugars and starch, and inhibits growth of potato plants. Plant J. 14: 147-157.

Hammer VA, Rogers QR, Freedland RA 1996 Threonine is catabolized by L-threonine 3-dehydrogenase and threonine dehydratase in hepatocytes from domestic cats (Felis domestica). J. Nutr. 126: 2218-2226.

Hixon M, Sinerius G, Schneider A, Walter C, Fessner WD, Schloss JV 1996 Quo vadis photorespiration: a tale of two aldolases. FEBS Lett. 392: 281-284.

Holtgrawe D, Scholz A, Altmann B, Scheibe R 2005 Cytoskeleton-associated, carbohydrate-metabolizing enzymes in maize identified by yeast two-hybrid screening. Physiol. Plant. 125: 141-156.

Hong SH, Park SJ, Moon SY, Park JP, Lee SY 2003 In silico prediction and validation of the importance of the Entner-Doudoroff pathway in poly(3-hydroxybutyrate) production by metabolically engineered Escherichia coli. Biotechnol. Bioeng. 83: 854-863.

Hurry V, Strand A, Furbank R, Stitt M 2000 The role of inorganic phosphate in the development of freezing tolerance and the acclimatization of photosynthesis to low temperature is revealed by the pho mutants of Arabidopsis thaliana. Plant J. 24: 383-396.

Hutchings D, Rawsthorne S, Emes MJ 2005 Fatty acid synthesis and the oxidative pentose phosphate pathway in developing embryos of oilseed rape (Brassica napus L.). J. Exp. Bot. 56: 577-585.

Jander G, Norris SR, Joshi V, Fraga M, Rugg A, Yu S, Li L, Last RL 2004 Application of a high-throughput HPLC-MS/MS assay to Arabidopsis mutant screening; evidence that threonine aldolase plays a role in seed nutritional quality. Plant J. 39: 465-475.

Jannaschk D, Burgos M, Centerlles JJ, Ovadi J, Cascante M 1999 Application of metabolic control analysis to the study of toxic effects of copper in muscle glycolysis. FEBS Lett. 445: 144-148.

Jung JH, Yun J, Seo YH, Park CM 2005 Characterization of an Arabidopsis gene that mediates cytokinin signaling in shoot apical meristem development. Mol. Cells 19: 342-349.

Kleijn RJ, van Winden WA, van Gulik WM, Heijnen JJ 2005 Revisiting the 13C-label distribution of the non-oxidative branch of the pentose phosphate pathway based upon kinetic and genetic evidence. FEBS J. 272: 4970-4982.

Konishi H, Kitano H, Komatsu S 2005 Identification of rice root proteins regulated by gibberellin using proteome analysis. Plant Cell Environ. 28: 328-339.

Konishi H, Yamane H, Maeshima M, Komatsu S 2004 Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling. Plant Mol. Biol. 56: 839-848.

Kromer JO, Sorgenfrei O, Klopprogge K, Heinzle E, Wittmann C 2004 In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome. J. Bacteriol. 186: 1769-1784.

Kvassmann J, Pettersson G, Ryde-Pettersson U 1988 Mechanism of glyceraldehyde-3-phosphate transfer from aldolase to glyceraldehyde-3-phosphate dehydrogenase. Eur. J. Biochem. 172: 427-431.

Lamble HJ, Milburn CC, Taylor GL, Hough DW, Danson MJ 2004 Gluconate dehydratase from the promiscuous Entner-Doudoroff pathway in Sulfolobus solfataricus. FEBS Lett. 576: 133-136.

Lamble HJ, Theodossis A, Milburn CC, Taylor GL, Bull SD, Hough DW, Danson MJ 2005 Promiscuity in the part-phosphorylative Entner-Doudoroff pathway of the archaeon Sulfolobus solfataricus. FEBS Lett. 579: 6865-6869.

Lawrence MC, Barbosa JA, Smith BJ, Hall NE, Pilling PA, Ooi HC, Marcuccio SM 1997 Structure and mechanism of a sub-family of enzymes related to N-acetylneuraminate lyase. J. Mol. Biol. 266: 381-399.

Lee CS, Salcedo E, Wang Q, Wang P, Sims PF, Hyde JE 2001 Characterization of three genes encoding enzymes of the folate biosynthetic pathway in Plasmodium falciparum. Parasitology 122: 1-13.

Liu JQ, Nagata S, Dairi T, Misono H, Shimizu S, Yamada H 1997 The GLY1 gene of Saccharomyces cerevisiae encodes a low-specific L-threonine aldolase that catalyzes cleavage of L-allo-threonine and L-threonine to glycine. Eur. J. Biochem. 245: 289-293.

Liu JQ, Odani M, Dairi T, Itoh N, Shimizu S, Yamada H 1999 A new route to L-threo-3-[4-(methylthio)phenylserine], a key intermediate for the synthesis of antibiotics: recombinant low-specificity D-threonine aldolase-catalyzed stereospecific resolution. Appl. Microbiol. Biotechnol. 51: 586-591.

Maaheimo H, Fiaux J, Cakar ZP, Bailey JE, Sauer U, Szyperski T 2001 Central carbon metabolism of Saccharomyces cerevisiae explored by biosynthetic fractional C-13 labeling of common amino acids. Eur. J. Biochem. 268: 2464-2479.

Martin F, Ramstedt M, Soderhall K 1987 Carbon and nitrogen metabolism in ectomycorrhizal fungi and ectomycorrhizas. Biochimie 69: 569-581.

Matt P, Krapp A, Haake V, Mock HP, Stitt M 2002 Decreased Rubisco activity leads to dramatic changes of nitrate metabolism, amino acid metabolism and the levels of phenylpropanoids and nicotine in tobacco antisense RBCS transformants. Plant J. 30: 663-677.

McNeil JB, Flynn J, Tsao N, Monschau N, Stahmann K, Haynes RH, McIntosh EM, Pearlman RE 2000 Glycine metabolism in Candida albicans: characterization of the serine hydroxymethyltransferase (SHM1, SHM2) and threonine aldolase (GLY1) genes. Yeast 16: 167-175.

Michelis R, Gepstein S 2000 Identification and characterization of a heat-induced isoform of aldolase in oat chloroplast. Plant Mol. Biol. 44: 487-498.

Monschau N, Stahmann KP, Sahm H, McNeil JB, Bognar AL 1997 Identification of Saccharomyces cerevisiae GLY1 as a threonine aldolase: a key enzyme in glycine biosynthesis. FEMS Microbiol. Lett. 150: 55-60.

Mujer CV, Rumpho ME, Lin JJ, Kennedy RA 1993 Constitutive and inducible aerobic and anaerobic stress proteins in the Echinochloa complex and rice. Plant Physiol. 101: 217-226.

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Ogawa H, Gomi T, Fujioka M 2000 Serine hydroxymethyltransferase and threonine aldolase: are they identical? Int. J. Biochem. Cell Biol. 32: 289-301.

Paul M, Pellny T, Goddijn O 2001 Enhancing photosynthesis with sugar signals. Trends Plant Sci. 6: 197-200.

Paul MJ, Driscoll SP, Andralojc PJ, Knight JS, Gray JC, Lawlor DW 2000 Decrease of phosphoribulokinase activity by antisense RNA in transgenic tobacco: definition of the light environment under which phosphoribulokinase is not in large excess. Planta 211: 112-119.

Rey P, Cuine S, Eymery F, Garin J, Court M, Jacquot JP, Rouhier N, Broin M 2005 Analysis of the proteins targeted by CDSP32, a plastidic thioredoxin participating in oxidative stress responses. Plant J. 41: 31-42.

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Schaaff-Gerstenschlager I, Zimmermann FK 1993 Pentose-phosphate pathway in Saccharomyces cerevisiae: analysis of deletion mutants for transketolase, transaldolase, and glucose 6-phosphate dehydrogenase. Curr. Genet. 24: 373-376.

Schrader MC, Eskey CJ, Simplaceanu V, Ho C 1993 A carbon-13 nuclear magnetic resonance investigation of the metabolic fluxes associated with glucose metabolism in human erythrocytes. Biochim. Biophys. Acta 1182: 162-178.

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Schwender J, Ohlrogge JB, Shachar-Hill Y 2003 A flux model of glycolysis and the oxidative pentosephosphate pathway in developing Brassica napus embryos. J. Biol. Chem. 278: 29442-29453.

Selivanov VA, Meshalkina LE, Solovjeva ON, Kuchel PW, Ramos-Montoya A, Kochetov GA, Lee PW, Cascante M 2005 Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells. Bioinformatics 21: 3558-3564.

Sprenger GA 1995 Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12. Arch. Microbiol. 164: 324-330.

Sriram G, Fulton DB, Iyer VV, Peterson JM, Zhou R, Westgate ME, Spalding MH, Shanks JV 2004 Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthetically directed fractional 13C labeling, two-dimensional [13C, 1H] nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiol. 136: 3043-3057.

Suss KH, Prokhorenko I, Adler K 1995 In situ association of Calvin cycle enzymes, ribulose-1,5-bisphosphate carboxylase/oxygenase activase, ferredoxin-NADP+ reductase, and nitrite reductase with thylakoid and pyrenoid membranes of Chlamydomonas reinhardtii chloroplasts · Plant Physiol. 107: 1387-1397.

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Van Winden WA, Van Gulik WM, Schipper D, Verheijen PJ, Krabben P, Vinke JL, Heijnen JJ 2003 Metabolic flux and metabolic network analysis of Penicillium chrysogenum using 2D [13C, 1H] COSY NMR measurements and cumulative bondomer simulation. Biotechnol. Bioeng. 83: 75-92.

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Whittaker A, Martinelli T, Bochicchio A, Vazzana C, Farrant J 2004 Comparison of sucrose metabolism during the rehydration of desiccation-tolerant and desiccation-sensitve leaf material of Sporobolus stapfianus. Physiol. Plant. 122: 11-20.

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Number of references = 98

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