Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D 2006 A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48.

Able AJ, Guest DI, Sutherland MW 1998 Use of a new tetrazolium-based assay to study the production of superoxide radicals by tobacco cell cultures challenged with avirulent zoospores of Phytophthora parasitica var nicotianae. Plant Physiol. 117: 491-499.

Able AJ, Guest DI, Sutherland MW 2000 Hydrogen peroxide yields during the incompatible interaction of tobacco suspension cells inoculated with Phytophthora nicotianae. Plant Physiol. 124: 899-910.

Abuqamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T 2006 Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J. 48: 28-44.

Achebach S, Tran QH, Vlamis-Gardikas A, Mullner M, Holmgren A, Unden G 2004 Stimulation of Fe-S cluster insertion into apoFNR by Escherichia coli glutaredoxins 1, 2 and 3 in vitro. FEBS Lett. 565: 203-206.

Ahlfors R, Macioszek V, Rudd J, Brosche M, Schlichting R, Scheel D, Kangasjarvi J 2004 Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure. Plant J. 40: 512-522.

Ahn CS, Lee JH, Reum Hwang A, Kim WT, Pai HS 2006 Prohibitin is involved in mitochondrial biogenesis in plants. Plant J. 46: 658-667.

Aktas H, Karni L, Chang DC, Turhan E, Bar-Tal A, Aloni B 2005 The suppression of salinity-associated oxygen radicals production, in pepper (Capsicum annuum) fruit, by manganese, zinc and calcium in relation to its sensitivity to blossom-end rot. Physiol. Plant. 123: 67-74.

Ali R, Ma W, Lemtiri-Chlieh F, Tsaltas D, Leng Q, von Bodman S, Berkowitz GA 2007 Death don't have no mercy and neither does calcium: Arabidopsis CYCLIC NUCLEOTIDE GATED CHANNEL2 and innate immunity. Plant Cell 19: 1081-1095.

Allen RD, Webb RP, Schake SA 1997 Use of transgenic plants to study antioxidant defenses. Free Radic. Biol. Med. 23: 473-479.

Alves E, Velini ED, Trindade ML, Cataneo AC, Marino CL, Mori ES, Guerrini IA, Furtado EL, Wilcken CF 2005 Eucalyptus ESTs related to genes for oxidative stress. J. Environ. Sci. Health B. 40: 151-157.

Amrani L, Primus J, Glatigny A, Arcangeli L, Scazzocchio C, Finnerty V 2000 Comparison of the sequences of the Aspergillus nidulans hxB and Drosophila melanogaster ma-l genes with nifS from Azotobacter vinelandii suggests a mechanism for the insertion of the terminal sulphur atom in the molybdopterin cofactor. Mol. Microbiol. 38: 114-125.

Andersson MX, Kourtchenko O, Dangl JL, Mackey D, Ellerstrom M 2006 Phospholipase-dependent signalling during the AvrRpm1- and AvrRpt2-induced disease resistance responses in Arabidopsis thaliana. Plant J. 47: 947-959.

Andreou AZ, Vanko M, Bezakova L, Feussner I 2008 Properties of a mini 9R-lipoxygenase from Nostoc sp. PCC 7120 and its mutant forms. Phytochemistry 69: 1832-1837.

Anthony RG, Khan S, Costa J, Pais MS, Bogre L 2006 The Arabidopsis protein kinase PTI1-2 is activated by convergent phosphatidic acid and oxidative stress signaling pathways downstream of PDK1 and OXI1. J. Biol. Chem. 281: 37536-37546.

Antunes MS, Ha SB, Tewari-Singh N, Morey KJ, Trofka AM, Kugrens P, Deyholos M, Medford JI 2006 A synthetic de-greening gene circuit provides a reporting system that is remotely detectable and has a re-set capacity. Plant Biotechnol. J. 4: 605-622.

Apel K, Hirt H 2004 Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu. Rev. Plant Biol. 55: 373-399.

Aposhian HV, Zakharyan RA, Avram MD, Kopplin MJ, Wollenberg ML 2003 Oxidation and detoxification of trivalent arsenic species. Toxicol. Appl. Pharmacol. 193: 1-8.

Aro EM, Suorsa M, Rokka A, Allahverdiyeva Y, Paakkarinen V, Saleem A, Battchikova N, Rintamaki E 2005 Dynamics of photosystem II: a proteomic approach to thylakoid protein complexes. J. Exp. Bot. 56: 347-356.

Arora A, Sairam RK, Srivastava GC 2002 Oxidative stress and antioxidative system in plants. Curr. Sci. 82: 1227-1238.

Arreguin de Lorencez M, Kappeli O 1987 Regulation of gluconeogenic enzymes during the cell cycle of Saccharomyces cerevisiae growing in a chemostat. J. Gen. Microbiol. 133: 2517-2522.

Asada K 1999 The water-water cycle in chloroplasts: scavenging of active oxygens and dissipation of excess photons. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 601-639.

Asada K 2006 Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiol. 141: 391-396.

Ashley MK, Grant M, Grabov A 2006 Plant responses to potassium deficiencies: a role for potassium transport proteins. J. Exp. Bot. 57: 425-436.

Ashtamker C, Kiss V, Sagi M, Davydov O, Fluhr R 2007 Diverse subcellular locations of cryptogein-induced reactive oxygen species production in tobacco Bright Yellow-2 cells. Plant Physiol. 143: 1817-1826.

Attallah CV, Welchen E, Pujol C, Bonnard G, Gonzalez DH 2007 Characterization of Arabidopsis thaliana genes encoding functional homologues of the yeast metal chaperone Cox19p, involved in cytochrome c oxidase biogenesis. Plant Mol. Biol. 65: 343-355.

Avila MA, Corrales FJ, Ruiz F, Sanchez-Gongora E, Mingorance J, Carretero MV, Mato IM 1998 Specific interaction of methionine adenosyltransferase with free radicals. Biofactors 8: 27-32.

Avsian-Kretchmer O, Eshdat Y, Gueta-Dahan Y, Ben-Hayyim G 1999 Regulation of stress-induced phospholipid hydroperoxide glutathione peroxidase expression in citrus. Planta 209: 469-477.

Azevedo H, Lino-Neto T, Tavares RM 2008 The necrotroph Botrytis cinerea induces a non-host type II resistance mechanism in Pinus pinaster suspension-cultured cells. Plant Cell Physiol. 49: 386-395.

Babu BN, Brown OR 1995 Quantitative effects of redox-cycling chemicals on the oxidant-sensitive enzyme dihydroxy-acid dehydratase. Microbios. 82: 157-170.

Badawi GH, Kawano N, Yamauchi Y, Shimada E, Sasaki R, Kubo A, Tanaka K 2004 Over-expression of ascorbate peroxidase in tobacco chloroplasts enhances the tolerance to salt stress and water deficit. Physiol. Plant. 121: 231-238.

Bae H, Kim MS, Sicher RC, Bae HJ, Bailey BA 2006 Necrosis- and ethylene-inducing peptide from Fusarium oxysporum induces a complex cascade of transcripts associated with signal transduction and cell death in Arabidopsis. Plant Physiol. 141: 1056-1067.

Baek D, Nam J, Koo YD, Kim DH, Lee J, Jeong JC, Kwak SS, Chung WS, Lim CO, Bahk JD, Hong JC, Lee SY, Kawai-Yamada M, Uchimiya H, Yun DJ 2004 Bax-induced cell death of Arabidopsis is meditated through reactive oxygen-dependent and -independent processes. Plant Mol. Biol. 56: 15-27.

Baier M, Kandlbinder A, Golldack D, Dietz KJ 2005 Oxidative stress and ozone: perception, signalling and response. Plant Cell Environ. 28: 1012-1020.

Bailey-Serres J, Mittler R 2006 The roles of reactive oxygen species in plant cells. Plant Physiol. 141: 311.

Bais HP, Vepachedu R, Gilroy S, Callaway RM, Vivanco JM 2003 Allelopathy and exotic plant invasion: from molecules and genes to species interactions. Science 301: 1377-1380.

Bakan B, Hamberg M, Perrocheau L, Maume D, Rogniaux H, Tranquet O, Rondeau C, Blein JP, Ponchet M, Marion D 2006 Specific adduction of plant lipid transfer protein by an allene oxide generated by 9-lipoxygenase and allene oxide synthase. J. Biol. Chem. 281: 38981-38988.

Baker CJ, Orlandi EW, Mock NM 1993 Harpin, an elicitor of the hypersensitive response in tobacco caused by Erwinia amylovora, elicits active oxygen production in suspension cells. Plant Physiol. 102: 1341-1344.

Balandin T, Castresana C 2002 AtCOX17, an Arabidopsis homolog of the yeast copper chaperone COX17. Plant Physiol. 129: 1852-1857.

Balsinde J, Winstead MV, Dennis EA 2002 Phospholipase A(2) regulation of arachidonic acid mobilization. FEBS Lett. 531: 2-6.

Banu MN, Hoque MA, Watanabe-Sugimoto M, Matsuoka K, Nakamura Y, Shimoishi Y, Murata Y 2008 Proline and glycinebetaine induce antioxidant defense gene expression and suppress cell death in cultured tobacco cells under salt stress. J. Plant Physiol. May 7 [Epub ahead of print].

Barjaktarovic Z, Nordheim A, Lamkemeyer T, Fladerer C, Madlung J, Hampp R 2007 Time-course of changes in amounts of specific proteins upon exposure to hyper-g, 2-D clinorotation, and 3-D random positioning of Arabidopsis cell cultures. J. Exp. Bot. 58: 4357-4363.

Barka EA 2001 Protective enzymes against reactive oxygen species during ripening of tomato (Lycopersicon esculentum) fruits in response to low amounts of UV-C. Aust. J. Plant Physiol. 28: 785-791.

Barlow JN, Zhang Z, John P, Baldwin JE, Schofield CJ 1997 Inactivation of 1-aminocyclopropane-1-carboxylate oxidase involves oxidative modifications. Biochemistry 36: 3563-3569.

Baroli I, Do AD, Yamane T, Niyogi KK 2003 Zeaxanthin accumulation in the absence of a functional xanthophyll cycle protects Chlamydomonas reinhardtii from photooxidative stress. Plant Cell 15: 992-1008.

Barra L, Pica N, Gouffi K, Walker GC, Blanco C, Trautwetter A 2003 Glucose 6-phosphate dehydrogenase is required for sucrose and trehalose to be efficient osmoprotectants in Sinorhizobium meliloti. FEMS Microbiol. Lett. 229: 183-188.

Barth C, Conklin PL 2003 The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae. Plant J. 35: 206-218.

Bartoli CG, Gomez F, Martinez DE, Guiamet JJ 2004 Mitochondria are the main target for oxidative damage in leaves of wheat (Triticum aestivum L.). J. Exp. Bot. 55: 1663-1669.

Baurain D, Dinant M, Coosemans N, Matagne RF 2003 Regulation of the alternative oxidase Aox1 gene in Chlamydomonas reinhardtii. Role of the nitrogen source on the expression of a reporter gene under the control of the Aox1 promoter. Plant Physiol. 131: 1418-1430.

Bechtold U, Karpinski S, Mullineaux PM 2005 The influence of the light environment and photosynthesis on oxidative signalling responses in plant-biotrophic pathogen interactions. Plant Cell Environ. 28: 1046-1055.

Bechtold U, Richard O, Zamboni A, Gapper C, Geisler M, Pogson B, Karpinski S, Mullineaux PM 2008 Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. J. Exp. Bot. 59: 121-133.

Beckett RP, Minibayeva FV, Luthje S, Bottger M 2004 Reactive oxygen species metabolism in desiccation-stressed thalli of the liverwort Dumortiera hirsuta. Physiol. Plant. 122: 3-10.

Beckett RP, Minibayeva FV, Vylegzhanina NN, Tolpysheva T 2003 High rates of extracellular superoxide production by lichens in the suborder Peltigerineae correlate with indices of high metabolic activity. Plant Cell Environ. 26: 1827-1837.

Beckman KB, Ames BN 1998 The free radical theory of aging matures. Physiol. Rev. 78: 547-581.

Beers EP, McDowell JM 2001 Regulation and execution of programmed cell death in response to pathogens, stress and developmental cues. Curr. Opin. Plant Biol. 4: 561-567.

Beffagna N, Lutzu I 2007 Inhibition of catalase activity as an early response of Arabidopsis thaliana cultured cells to the phytotoxin fusicoccin. J. Exp. Bot. 58: 4183-4194.

Beligni MV, Fath A, Bethke PC, Lamattina L, Jones RL 2002 Nitric oxide acts as an antioxidant and delays programmed cell death in barley aleurone layers. Plant Physiol. 129: 1642-1650.

Beligni MV, Lamattina L 2002 Nitric oxide interferes with plant photo-oxidative stress by detoxifying reactive oxygen species. Plant Cell Environ. 25: 737-748.

Ben-Amor M, Flores B, Latche A, Bouzayen M, Pech JC, Fomojaro F 1999 Inhibition of ethylene biosynthesis by antisense ACC oxidase RNA prevents chilling injury in Charentais cantaloupe melons. Plant Cell Environ. 22: 1579-1586.

Bennett R, Donald A, Dawson G, Hick A, Wallsgrove R 1993 Aldoxime-forming microsomal enzyme systems involved in the biosynthesis of glucosinolates in oilseed rape (Brassica napus) leaves. Plant Physiol. 102: 1307-1312.

Bennett RN, Hick AJ, Dawson GW, Wallsgrove RM 1995 Glucosinolate biosynthesis. Further characterization of the aldoxime-forming microsomal monooxygenases in oilseed rape leaves. Plant Physiol. 109: 299-305.

Benveniste I, Bronner R, Wang Y, Compagnon V, Michler P, Schreiber L, Salaun JP, Durst F, Pinot F 2005 CYP94A1, a plant cytochrome P450-catalyzing fatty acid omega-hydroxylase, is selectively induced by chemical stress in Vicia sativa seedlings. Planta 221: 881-890.

Benzie IF 2003 Evolution of dietary antioxidants. Comp. Biochem. Physiol. A. Mol. Integr. Physiol. 136: 113-126.

Bergaust L, Shapleigh J, Frostegard A, Bakken L 2008 Transcription and activities of NO(x) reductases in Agrobacterium tumefaciens: the influence of nitrate, nitrite and oxygen availability. Environ. Microbiol. Feb 24 [Epub ahead of print].

Bergman M, Perelman A, Dubinsky Z, Grossman S 2003 Scavenging of reactive oxygen species by a novel glucurinated flavonoid antioxidant isolated and purified from spinach. Phytochemistry 62: 753-762.

Bernal M, Roncel M, Ortega JM, Picorel R, Yruela I 2004 Copper effect on cytochrome b of photosystem II under photoinhibitory conditions. Physiol. Plant. 120: 686-694.

Berrios-Rivera SJ, Bennett GN, San KY 2002 Metabolic engineering of Escherichia coli: increase of NADH availability by overexpressing an NAD(+)-dependent formate dehydrogenase. Metab. Eng. 4: 217-229.

Bertoldi M, Dominici P, Moore PS, Maras B, Voltattorni CB 1998 Reaction of dopa decarboxylase with alpha-methyldopa leads to an oxidative deamination producing 3,4-dihydroxyphenylacetone, an active site directed affinity label. Biochemistry 37: 6552-6561.

Bestwick CS, Brown IR, Bennett MH, Mansfield JW 1997 Localization of hydrogen peroxide accumulation during the hypersensitive reaction of lettuce cells to Pseudomonas syringae pv phaseolicola. Plant Cell 9: 209-221.

Bestwick CS, Brown IR, Mansfield JW 1998 Localized changes in peroxidase activity accompany hydrogen peroxide generation during the development of a nonhost hypersensitive reaction in lettuce. Plant Physiol. 118: 1067-1078.

Biemelt S, Keetman U, Mock H-P, Grimm B 2000 Expression and activity of isoenzymes of superoxide dismutase in wheat roots in response to hypoxia and anoxia. Plant Cell Environ. 23: 135-144.

Bienert GP, Moller AL, Kristiansen KA, Schulz A, Moller IM, Schjoerring JK, Jahn TP 2007 Specific aquaporins facilitate the diffusion of hydrogen peroxide across membranes. J. Biol. Chem. 282: 1183-1192.

Bienert GP, Schjoerring JK, Jahn TP 2006 Membrane transport of hydrogen peroxide. Biochim. Biophys. Acta 1758: 994-1003.

Billett EE, Wallace W, Smith H 1978 A specific and reversible macromolecular inhibitor of phenylalanine ammonia-lyase and cinnamic acid-4-hydroxylase in gherkins. Biochim. Biophys. Acta 524: 219-230.

Bischof K, Krabs G, Wiencke C, Hanelt D 2002 Solar ultraviolet radiation affects the activity of ribulose-1,5-bisphosphate carboxylase-oxygenase and the composition of photosynthetic and xanthophyll cycle pigments in the intertidal green alga Ulva lactuca L. Planta 215: 502-509.

Bishop GR, Zhu Z, Whitehead TL, Hicks RP, Davidson VL 1998 Identification of reaction products and intermediates of aromatic-amine dehydrogenase by 15N and 13C NMR. Biochem. J. 330: 1159-1163.

Bjorn LO, Widell S, Wang T 2002 Evolution of UV-B regulation and protection in plants. Adv. Space Res. 30: 1557-1562.

Blee KA, Jupe SC, Richard G, Zimmerlin A, Davies DR, Bolwell GP 2001 Molecular identification and expression of the peroxidase responsible for the oxidative burst in French bean (Phaseolus vulgaris L.) and related members of the gene family. Plant Mol. Biol. 47: 607-620.

Blokhina O, Virolainen E, Fagerstedt KV 2003 Antioxidants, oxidative damage and oxygen deprivation stress: a review. Ann. Bot. (Lond.) 91: 179-194.

Boissier F, Bardou F, Guillet V, Uttenweiler-Joseph S, Daffe M, Quemard A, Mourey L 2006 Further insight into S-adenosylmethionine-dependent methyltransferases: structural characterization of Hma, an enzyme essential for the biosynthesis of oxygenated mycolic acids in Mycobacterium tuberculosis. J. Biol. Chem. 281: 4434-4445.

Bokoch GM, Knaus UG 2003 NADPH oxidases: not just for leukocytes anymore! Trends Biochem. Sci. 28: 502-508.

Bolwell GP 1999 Role of active oxygen species and NO in plant defence responses. Curr. Opin. Plant Biol. 2: 287-294.

Bolwell GP, Bindschedler LV, Blee KA, Butt VS, Davies DR, Gardner SL, Gerrish C, Minibayeva F 2002 The apoplastic oxidative burst in response to biotic stress in plants: a three-component system. J. Exp. Bot. 53: 1367-1376.

Bolwell GP, Butt VS, Davies DR, Zimmerlin A 1995 The origin of the oxidative burst in plants. Free Radic. Res. 23: 517-532.

Borland A, Elliott S, Patterson S, Taybi T, Cushman J, Pater B, Barnes J 2006 Are the metabolic components of Crassulacean acid metabolism up-regulated in response to an increase in oxidative burden? J. Exp. Bot. 57: 319-328.

Borsani O, Valpuesta V, Botella MA 2001 Evidence for a role of salicylic acid in the oxidative damage generated by NaCl and osmotic stress in Arabidopsis seedlings. Plant Physiol. 126: 1024-1030.

Bouche N, Fait A, Bouchez D, Moller SG, Fromm H 2003 Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants. Proc. Natl. Acad. Sci. U.S.A. 100: 6843-6848.

Boudart G, Charpentier M, Lafitte C, Martinez Y, Jauneau A, Gaulin E, Esquerre-Tugaye MT, Dumas B 2003 Elicitor activity of a fungal endopolygalacturonase in tobacco requires a functional catalytic site and cell wall localization. Plant Physiol. 131: 93-101.

Boulanger MJ, Murphy ME 2001 Alternate substrate binding modes to two mutant (D98N and H255N) forms of nitrite reductase from Alcaligenes faecalis S-6: structural model of a transient catalytic intermediate. Biochemistry 40: 9132-9141.

Bouranis DL, Chorianopoulou SN, Kollias C, Maniou P, Protonotarios VE, Siyiannis VF, Hawkesford MJ 2006 Dynamics of aerenchyma distribution in the cortex of sulfate-deprived adventitious roots of maize. Ann. Bot. (Lond.) 97: 695-704.

Bouranis DL, Chorianopoulou SN, Siyiannis VF, Protonotarios VE, Hawkesford MJ 2003 Aerenchyma formation in roots of maize during sulphate starvation. Planta 217: 382-391.

Bourque S, Lemoine R, Sequeira-Legrand A, Fayolle L, Delrot S, Pugin A 2002 The elicitor cryptogein blocks glucose transport in tobacco cells. Plant Physiol. 130: 2177-2187.

Boursiac Y, Boudet J, Postaire O, Luu DT, Tournaire-Roux C, Maurel C 2008 Stimulus-induced down-regulation of root water transport involves reactive oxygen species-activated cell signalling and plasma membrane intrinsic protein internalization. Plant J. Jun 20 [Epub ahead of print].

Bozzo GG, Raghothama KG, Plaxton WC 2002 Purification and characterization of two secreted purple acid phosphatase isozymes from phosphate-starved tomato (Lycopersicon esculentum) cell cultures. Eur. J. Biochem. 269: 6278-6286.

Bradford KJ, Benech-Arnold RL, Come D, Corbineau F 2008 Quantifying the sensitivity of barley seed germination to oxygen, abscisic acid, and gibberellin using a population-based threshold model. J. Exp. Bot. 59: 335-347.

Braidot E, Petrussa E, Micolini S, Tubaro F, Vianello A, Macri F 2004 Biochemical and immunochemical evidences for the presence of lipoxygenase in plant mitochondria. J. Exp. Bot. 55: 1655-1662.

Branden CI, Lindqvist Y, Schneider G 1991 Protein engineering of Rubisco. Acta Crystallogr. B. 47: 824-835.

Brinker AM, Ma J, Lipsky PE, Raskin I 2007 Medicinal chemistry and pharmacology of genus Tripterygium (Celastraceae). Phytochemistry 68: 732-766.

Brown OR, Smyk-Randall E, Draczynska-Lusiak B, Fee JA 1995 Dihydroxy-acid dehydratase, a [4Fe-4S] cluster-containing enzyme in Escherichia coli: effects of intracellular superoxide dismutase on its inactivation by oxidant stress. Arch. Biochem. Biophys. 319: 10-22.

Brux C, Ben-David A, Shallom-Shezifi D, Leon M, Niefind K, Shoham G, Shoham Y, Schomburg D 2006 The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues. J. Mol. Biol. 359: 97-109.

Brychkova G, Alikulov Z, Fluhr R, Sagi M 2008 A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant. Plant J. 54: 496-509.

Buchanan BB, Balmer Y 2005 Redox regulation: a broadening horizon. Annu. Rev. Plant Biol. 56: 187-220.

Buchanan CD, Lim S, Salzman RA, Kagiampakis I, Morishige DT, Weers BD, Klein RR, Pratt LH, Cordonnier-Pratt MM, Klein PE, Mullet JE 2005 Sorghum bicolor's transcriptome response to dehydration, high salinity and ABA. Plant Mol. Biol. 58: 699-720.

Bunik VI 2003 2-Oxo acid dehydrogenase complexes in redox regulation. Eur. J. Biochem. 270: 1036-1042.

Bunik VI, Sievers C 2002 Inactivation of the 2-oxo acid dehydrogenase complexes upon generation of intrinsic radical species. Eur. J. Biochem. 269: 5004-5015.

Bunkelmann JR, Trelease RN 1996 Ascorbate peroxidase. A prominent membrane protein in oilseed glyoxysomes. Plant Physiol. 110: 589-598.

Burman JD, Harris RL, Hauton KA, Lawson DM, Sawers RG 2004 The iron-sulfur cluster in the L-serine dehydratase TdcG from Escherichia coli is required for enzyme activity. FEBS Lett. 576: 442-444.

Burritt DJ, Larkindale J, Hurd CL 2002 Antioxidant metabolism in the intertidal red seaweed Stictosiphonia arbuscula following desiccation. Planta 215: 829-838.

Busi MV, Maliandi MV, Valdez H, Clemente M, Zabaleta EJ, Araya A, Gomez-Casati DF 2006 Deficiency of Arabidopsis thaliana frataxin alters activity of mitochondrial Fe-S proteins and induces oxidative stress. Plant J. 48: 873-882.

Butterfield DA, Koppal T, Howard B, Subramaniam R, Hall N, Hensley K, Yatin S, Allen K, Aksenov M, Aksenova M, Carney J 1998 Structural and functional changes in proteins induced by free radical-mediated oxidative stress and protective action of the antioxidants N-tert-butyl-alpha-phenylnitrone and vitamin E. Ann. N.Y. Acad. Sci. 854: 448-462.

Cabane M, Pireaux JC, Leger E, Weber E, Dizengremel P, Pollet B, Lapierre C 2004 Condensed lignins are synthesized in poplar leaves exposed to ozone. Plant Physiol. 134: 586-594.

Cafaro V, Scognamiglio R, Viggiani A, Izzo V, Passaro I, Notomista E, Piaz FD, Amoresano A, Casbarra A, Pucci P, Di Donato A 2002 Expression and purification of the recombinant subunits of toluene/o-xylene monooxygenase and reconstitution of the active complex. Eur. J. Biochem. 269: 5689-5699.

Caldwell CR 1993 Ultraviolet-induced photodegradation of cucumber (Cucumis sativus L.) microsomal and soluble protein tryptophanyl residues in vitro. Plant Physiol. 101: 947-953.

Calik P, Calik G, Taka S, Ozdamar TH 1999 Metabolic flux analysis for serine alkaline protease fermentation by Bacillus licheniformis in a defined medium: effects of the oxygen transfer rate. Biotechnol. Bioeng. 64: 151-167.

Canfield DE, Thamdrup B, Fleischer S 1998 Isotope fractionation and sulfur metabolism by pure and enrichment cultures of elemental sulfur-disproportionating bacteria. Limnol. Oceanogr. 43: 253-264.

Cardenas L, Martinez A, Sanchez F, Quinto C 2008 Fast transient and specific intracellular ROS changes in living root hair cells responding to Nod factors (NFs). Plant J. Jul 31 [Epub ahead of print].

Cardenas L, McKenna ST, Kunkel JG, Hepler PK 2006 NAD(P)H oscillates in pollen tubes and is correlated with tip-growth. Plant Physiol. 142: 1460-1468.

Cardol P, Gloire G, Havaux M, Remacle C, Matagne R, Franck F 2003 Photosynthesis and state transitions in mitochondrial mutants of Chlamydomonas reinhardtii affected in respiration. Plant Physiol. 133: 2010-2020.

Casano LM, Gomez LD, Lascano HR, Gonzalez CA, Trippi VS 1997 Inactivation and degradation of CuZn-SOD by active oxygen species in wheat chloroplasts exposed to photooxidative stress. Plant Cell Physiol. 38: 433-440.

Causevic A, Gentil MV, Delaunay A, El-Soud WA, Garcia Z, Pannetier C, Brignolas F, Hagege D, Maury S 2006 Relationship between DNA methylation and histone acetylation levels, cell redox and cell differentiation states in sugarbeet lines. Planta 224: 812-827.

Cavas L, Yurdakoc K 2005 A comparative study: assessment of the antioxidant system in the invasive green alga Caulerpa racemosa and some macrophytes from the Mediterranean. J. Exp. Mar. Biol. Ecol. 321: 35-41.

Cazale AC, Rouet-Mayer MA, Barbier-Brygoo H, Mathieu Y, Lauriere C 1998 Oxidative burst and hypoosmotic stress in tobacco cell suspensions. Plant Physiol. 116: 659-669.

Cecchini G 2003 Function and structure of complex II of the respiratory chain. Annu. Rev. Biochem. 72: 77-109.

Celik A, Cullis PM, Sutcliffe MJ, Sangar R, Raven EL 2001 Engineering the active site of ascorbate peroxidase. Eur. J. Biochem. 268: 78-85.

Centola F, Rinaldo S, Brunori M, Cutruzzola F 2006 Critical role of His369 in the reactivity of Pseudomonas aeruginosa cytochrome cd1 nitrite reductase with oxygen. FEBS J. 273: 4495-4503.

Cervilla LM, Blasco B, Ríos JJ, Romero L, Ruiz JM 2007 Oxidative stress and antioxidants in tomato (Solanum lycopersicum) plants subjected to boron toxicity. Ann. Bot. (Lond.) 100: 747-756.

Cha MK, Kim HK, Kim IH 1995 Thioredoxin-linked "thiol peroxidase" from periplasmic space of Escherichia coli. J. Biol. Chem. 270: 28635-28641.

Chai MF, Wei PC, Chen QJ, An R, Chen J, Yang S, Wang XC 2006 NADK3, a novel cytoplasmic source of NADPH, is required under conditions of oxidative stress and modulates abscisic acid responses in Arabidopsis. Plant J. 47: 665-674.

Chang CC, Ball L, Fryer MJ, Baker NR, Karpinski S, Mullineaux PM 2004 Induction of ASCORBATE PEROXIDASE 2 expression in wounded Arabidopsis leaves does not involve known wound-signalling pathways but is associated with changes in photosynthesis. Plant J. 38: 499-511.

Chang CY, Argo CK, Al-Osaimi AM, Caldwell SH 2006 Therapy of NAFLD: antioxidants and cytoprotective agents. J. Clin. Gastroenterol. 40: S51-S60.

Charlton WL, Matsui K, Johnson B, Graham IA, Ohme-Takagi M, Baker A 2005 Salt-induced expression of peroxisome-associated genes requires components of the ethylene, jasmonate and abscisic acid signalling pathways. Plant Cell Environ. 28: 513-524.

Chen C, Dickman MB 2005 Proline suppresses apoptosis in the fungal pathogen Colletotrichum trifolii. Proc. Natl. Acad. Sci. U.S.A. 102: 3459-3464.

Chen HP, He M, Huang QR, Liu D, Huang M 2007 Sasanquasaponin protects rat cardiomyocytes against oxidative stress induced by anoxia-reoxygenation injury. Eur. J. Pharmacol. 575: 21-27.

Chen TH, Murata N 2002 Enhancement of tolerance of abiotic stress by metabolic engineering of betaines and other compatible solutes. Curr. Opin. Plant Biol. 5: 250-257.

Chen WP, Li PH, Chen THH 2000 Glycinebetaine increases chilling tolerance and reduces chilling-induced lipid peroxidation in Zea mays L. Plant Cell Environ. 23: 609-618.

Chen Z, Gallie DR 2006 Dehydroascorbate reductase affects leaf growth, development, and function. Plant Physiol. 142: 775-787.

Chen Z, Silva H, Klessig DF 1993 Active oxygen species in the induction of plant systemic acquired resistance by salicylic acid. Science 262: 1883-1886.

Chinnusamy V, Zhu J, Zhu JK 2006 Gene regulation during cold acclimation in plants. Physiol. Plant. 126: 52-61.

Chipman D, Barak Z, Schloss JV 1998 Biosynthesis of 2-aceto-2-hydroxy acids: acetolactate synthases and acetohydroxyacid synthases. Biochim. Biophys. Acta 1385: 401-419.

Choi SM, Jeong SW, Jeong WJ, Kwon SY, Chow WS, Park YI 2002 Chloroplast Cu/Zn-superoxide dismutase is a highly sensitive site in cucumber leaves chilled in the light. Planta 216: 315-324.

Chong J, Baltz R, Schmitt C, Beffa R, Fritig B, Saindrenan P 2002 Downregulation of a pathogen-responsive tobacco UDP-Glc:phenylpropanoid glucosyltransferase reduces scopoletin glucoside accumulation, enhances oxidative stress, and weakens virus resistance. Plant Cell 14: 1093-1107.

Christinet L, Burdet FX, Zaiko M, Hinz U, Zryd JP 2004 Characterization and functional identification of a novel plant 4,5-extradiol dioxygenase involved in betalain pigment biosynthesis in Portulaca grandiflora. Plant Physiol. 134: 265-274.

Chung JS, Zhu JK, Bressan RA, Hasegawa PM, Shi H 2008 Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. Plant J. 53: 554-565.

Chung LY, Yap KF, Goh SH, Mustafa MR, Imiyabir Z 2008 Muscarinic receptor binding activity of polyoxygenated flavones from Melicope subunifoliolata. Phytochemistry 69: 1548-1554.

Ciapaite J, Bakker SJ, Diamant M, van Eikenhorst G, Heine RJ, Westerhoff HV, Krab K 2006 Metabolic control of mitochondrial properties by adenine nucleotide translocator determines palmitoyl-CoA effects. FEBS J. 273: 5288-5302.

Clarke A, Desikan R, Hurst RD, Hancock JT, Neill SJ 2000 NO way back: nitric oxide and programmed cell death in Arabidopsis thaliana suspension cultures. Plant J. 24: 667-677.

Clegg MR, Maberly SC, Jones RI 2004 Chemosensory behavioural response of freshwater phytoplanktonic flagellates. Plant Cell Environ. 27: 123-135.

Clerkx EJ, Vries HB, Ruys GJ, Groot SP, Koornneef M 2003 Characterization of green seed, an enhancer of abi3-1 in Arabidopsis that affects seed longevity. Plant Physiol. 132: 1077-1084.

Clerkx EJM, Blankestijn-De Vries H, Ruys GJ, Groot SPC, Koornneef M 2004 Genetic differences in seed longevity of various Arabidopsis mutants. Physiol. Plant. 121: 448-461.

Coego A, Ramirez V, Ellul P, Mayda E, Vera P 2005 The H2O2-regulated Ep5C gene encodes a peroxidase required for bacterial speck susceptibility in tomato. Plant J. 42: 283-293.

Coelho SM, Taylor AR, Ryan KP, Sousa-Pinto I, Brown MT, Brownlee C 2002 Spatiotemporal patterning of reactive oxygen production and Ca(2+) wave propagation in Fucus rhizoid cells. Plant Cell 14: 2369-2381.

Coffeen WC, Wolpert TJ 2004 Purification and characterization of serine proteases that exhibit caspase-like activity and are associated with programmed cell death in Avena sativa. Plant Cell 16: 857-873.

Cohen I, Knopf JA, Irihimovitch V, Shapira M 2005 A proposed mechanism for the inhibitory effects of oxidative stress on Rubisco assembly and its subunit expression. Plant Physiol. 137: 738-746.

Cohen R, Jensen KA, Houtman CJ, Hammel KE 2002 Significant levels of extracellular reactive oxygen species produced by brown rot basidiomycetes on cellulose. FEBS Lett. 531: 483-488.

Coker JS, Vian A, Davies E 2005 Identification, accumulation, and functional prediction of novel tomato transcripts systemically upregulated after fire damage. Physiol. Plant. 124: 311-322.

Colebatch G, Kloska S, Trevaskis B, Freund S, Altmann T, Udvardi MK 2002 Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays. Mol. Plant Microbe Interact. 15: 411-420.

Conklin PL 2001 Recent advances in the role and biosynthesis of ascorbic acid in plants. Plant Cell Environ. 24: 383-394.

Conklin PL, Barth C 2004 Ascorbic acid, a familiar small molecule intertwined in the response of plants to ozone, pathogens, and the onset of senescence. Plant Cell Environ. 27: 959-970.

Contour-Ansel D, Torres-Franklin ML, Cruz DE Carvalho MH, D'Arcy-Lameta A, Zuily-Fodil Y 2006 Glutathione reductase in leaves of cowpea: cloning of two cDNAs, expression and enzymatic activity under progressive drought stress, desiccation and abscisic acid treatment. Ann. Bot. (Lond.) 98: 1279-1287.

Cooper CE, Patel RP, Brookes PS, Darley-Usmar VM 2002 Nanotransducers in cellular redox signaling: modification of thiols by reactive oxygen and nitrogen species. Trends Biochem. Sci. 27: 489-492.

Costet L, Dorey S, Fritig B, Kauffmann S 2002 A pharmacological approach to test the diffusible signal activity of reactive oxygen intermediates in elicitor-treated tobacco leaves. Plant Cell Physiol. 43: 91-98.

Couee I, Sulmon C, Gouesbet G, El Amrani A 2006 Involvement of soluble sugars in reactive oxygen species balance and responses to oxidative stress in plants. J. Exp. Bot. 57: 449-459.

Coupe SA, Sinclair BK, Watson LM, Heyes JA, Eason JR 2003 Identification of dehydration-responsive cysteine proteases during post-harvest senescence of broccoli florets. J. Exp. Bot. 54: 1045-1056.

Crack JC, Le Brun NE, Thomson AJ, Green J, Jervis AJ 2008 Reactions of nitric oxide and oxygen with the regulator of fumarate and nitrate reduction, a global transcriptional regulator, during anaerobic growth of Escherichia coli. Methods Enzymol. 437: 191-209.

Cramer GR, Ergul A, Grimplet J, Tillett RL, Tattersall EA, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D, Schlauch KA, Schooley DA, Cushman JC 2007 Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Funct. Integr. Genomics 7: 111-134.

Cramer WA, Soriano GM, Ponomarev M, Huang D, Zhang H, Martinez SE, Smith JL 1996 Some new structural aspects and old controversies concerning the cytochrome b(6)f complex of oxygenic photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 477-508.

Crossman LC, Moir JW, Enticknap JJ, Richardson DJ, Spiro S 1997 Heterologous expression of heterotrophic nitrification genes. Microbiology 143: 3775-3783.

Cuin TA, Shabala S 2007 Compatible solutes reduce ROS-induced potassium efflux in Arabidopsis roots. Plant Cell Environ. 30: 875-885.

Cutler AJ, Krochko JE 1999 Formation and breakdown of ABA. Trends Plant Sci. 4: 472-478.

D'Arcy-Lameta A, Ferrari-Iliou R, Contour-Ansel D, Pham-Thi AT, Zuily-Fodil Y 2006 Isolation and characterization of four ascorbate peroxidase cDNAs responsive to water deficit in cowpea leaves. Ann. Bot. (Lond.) 97: 133-140.

D'Haese D, Vandermeiren K, Asard H, Horemans N 2005 Other factors than apoplastic ascorbate contribute to the differential ozone tolerance of two clones of Trifolium repens L.. Plant Cell Environ. 28: 623-632.

Dall'Osto L, Cazzaniga S, North H, Marion-Poll A, Bassi R 2007 The Arabidopsis aba4-1 mutant reveals a specific function for neoxanthin in protection against photooxidative stress. Plant Cell 19: 1048-1064.

Danon A, Coll NS, Apel K 2006 Cryptochrome-1-dependent execution of programmed cell death induced by singlet oxygen in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 103: 17036-17041.

Danon A, Miersch O, Felix G, Camp RG, Apel K 2005 Concurrent activation of cell death-regulating signaling pathways by singlet oxygen in Arabidopsis thaliana. Plant J. 41: 68-80.

Das S, DeMason DA, Ehlers JD, Close TJ, Roberts PA 2008 Histological characterization of root-knot nematode resistance in cowpea and its relation to reactive oxygen species modulation. J. Exp. Bot. 59: 1305-1313.

Dat JF, Inze D, Van Breusegem F 2001 Catalase-deficient tobacco plants: tools for in planta studies on the role of hydrogen peroxide. Redox Rep. 6: 37-42.

Datta SK 2002 Recent developments in transgenics for abiotic stress tolerance in rice. JIRCAS Working Report No.23, "Genetic Engineering of Crop Plants for Abiotic Stress" (Iwanaga M, ed.) p. 43-53.

Davidson SE, Swain SM, Reid JB 2005 Regulation of the early GA biosynthesis pathway in pea. Planta 222: 1010-1019.

Davison PA, Hunter CN, Horton P 2002 Overexpression of beta-carotene hydroxylase enhances stress tolerance in Arabidopsis. Nature 418: 203-206.

Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R 2005 Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 17: 268-281.

Davletova S, Schlauch K, Coutu J, Mittler R 2005 The zinc-finger protein zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 139: 847-856.

Davoine C, Falletti O, Douki T, Iacazio G, Ennar N, Montillet JL, Triantaphylides C 2006 Adducts of oxylipin electrophiles to glutathione reflect a 13 specificity of the downstream lipoxygenase pathway in the tobacco hypersensitive response. Plant Physiol. 140: 1484-1493.

Daxberger A, Nemak A, Mithofer A, Fliegmann J, Ligterink W, Hirt H, Ebel J 2007 Activation of members of a MAPK module in beta-glucan elicitor-mediated non-host resistance of soybean. Planta 225: 1559-1571.

Dayakar BV, Lin HJ, Chen CH, Ger MJ, Lee BH, Pai CH, Chow D, Huang HE, Hwang SY, Chung MC, Feng TY 2003 Ferredoxin from sweet pepper (Capsicum annuum L.) intensifying harpin(pss)-mediated hypersensitive response shows an enhanced production of active oxygen species (AOS). Plant Mol. Biol. 51: 913-924.

Dayan FE, Duke SO, Sauldubois A, Singh N, McCurdy C, Cantrell C 2007 p-Hydroxyphenylpyruvate dioxygenase is a herbicidal target site for beta-triketones from Leptospermum scoparium. Phytochemistry 68: 2004-2014.

Dayan FE, Watson SB, Nanayakkara NP 2007 Biosynthesis of lipid resorcinols and benzoquinones in isolated secretory plant root hairs. J. Exp. Bot. 58: 3263-3272.

De Block M, Verduyn C, De Brouwer D, Cornelissen M 2005 Poly(ADP-ribose) polymerase in plants affects energy homeostasis, cell death and stress tolerance. Plant J. 41: 95-106.

De Carolis E, De Luca V 1993 Purification, characterization, and kinetic analysis of a 2-oxoglutarate-dependent dioxygenase involved in vindoline biosynthesis from Catharanthus roseus. J. Biol. Chem. 268: 5504-5511.

De Gara L, de Pinto MC, Moliterni VM, D'Egidio MG 2003 Redox regulation and storage processes during maturation in kernels of Triticum durum. J. Exp. Bot. 54: 249-258.

De Luca V, St Pierre B 2000 The cell and developmental biology of alkaloid biosynthesis. Trends Plant Sci. 5: 168-173.

de Pinto MC, Paradiso A, Leonetti P, De Gara L 2006 Hydrogen peroxide, nitric oxide and cytosolic ascorbate peroxidase at the crossroad between defence and cell death. Plant J. 48: 784-795.

De Pinto MC, Tommasi F, De Gara L 2002 Changes in the antioxidant systems as part of the signaling pathway responsible for the programmed cell death activated by nitric oxide and reactive oxygen species in tobacco bright-yellow 2 cells. Plant Physiol. 130: 698-708.

del Rio LA, Corpas FJ, Sandalio LM, Palma JM, Barroso JB 2003 Plant peroxisomes, reactive oxygen metabolism and nitric oxide. IUBMB Life 55: 71-81.

del Rio LA, Corpas FJ, Sandalio LM, Palma JM, Gomez M, Barroso JB 2002 Reactive oxygen species, antioxidant systems and nitric oxide in peroxisomes. J. Exp. Bot. 53: 1255-1272.

del Rio LA, Sandalio LM, Corpas FJ, Palma JM, Barroso JB 2006 Reactive oxygen species and reactive nitrogen species in peroxisomes. Production, scavenging, and role in cell signaling. Plant Physiol. 141: 330-335.

Delledonne M, Xia Y, Dixon RA, Lamb C 1998 Nitric oxide functions as a signal in plant disease resistance. Nature 394: 585-588.

Demidchik V, Davenport RJ, Tester M 2002 Nonselective cation channels in plants. Annu. Rev. Plant Biol. 53: 67-107.

Denby KJ, Jason LJ, Murray SL, Last RL 2005 ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways. Plant J. 41: 673-684.

Dent RM, Haglund CM, Chin BL, Kobayashi MC, Niyogi KK 2005 Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii. Plant Physiol. 137: 545-556.

Desikan R, A -H -Mackerness S, Hancock JT, Neill SJ 2001 Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol. 127: 159-72.

Desikan R, Cheung MK, Bright J, Henson D, Hancock JT, Neill SJ 2004 ABA, hydrogen peroxide and nitric oxide signalling in stomatal guard cells. J. Exp. Bot. 55: 205-212.

Desikan R, Hancock JT, Coffey MJ, Neill SJ 1996 Generation of active oxygen in elicited cells of Arabidopsis thaliana is mediated by a NADPH oxidase-like enzyme. FEBS Lett. 382: 213-217.

Desikan R, Reynolds A, Hancock JT, Neill SJ 1998 Harpin and hydrogen peroxide both initiate programmed cell death but have differential effects on defence gene expression in Arabidopsis suspension cultures. Biochem. J. 330: 115-20.

Deuschle K, Funck D, Forlani G, Stransky H, Biehl A, Leister D, van der Graaff E, Kunze R, Frommer WB 2004 The role of [delta]1-pyrroline-5-carboxylate dehydrogenase in proline degradation. Plant Cell 16: 3413-3425.

Deuschle K, Funck D, Hellmann H, Daschner K, Binder S, Frommer WB 2001 A nuclear gene encoding mitochondrial delta-pyrroline-5-carboxylate dehydrogenase and its potential role in protection from proline toxicity. Plant J. 27: 345-356.

Devienne KF, Calgaro-Helena AF, Dorta DJ, Prado IM, Raddi MS, Vilegas W, Uyemura SA, Santos AC, Curti C 2007 Antioxidant activity of isocoumarins isolated from Paepalanthus bromelioides on mitochondria. Phytochemistry 68: 1075-1080.

Dharajiya N, Boldogh I, Cardenas V, Sur S 2008 Role of pollen NAD(P)H oxidase in allergic inflammation. Curr. Opin. Allergy Clin. Immunol. 8: 57-62.

Dhondt S, Gouzerh G, Muller A, Legrand M, Heitz T 2002 Spatio-temporal expression of patatin-like lipid acyl hydrolases and accumulation of jasmonates in elicitor-treated tobacco leaves are not affected by endogenous levels of salicylic acid. Plant J. 32: 749-762.

Diaz-Vivancos P, Clemente-Moreno MJ, Rubio M, Olmos E, Garcia JA, Martinez-Gomez P, Hernandez JA 2008 Alteration in the chloroplastic metabolism leads to ROS accumulation in pea plants in response to plum pox virus. J. Exp. Bot. 59: 2147-2160.

Diekmann S, Weston J, Anders E, Boland W, Schonecker B, Hettmann T, von Langen J, Erhardt S, Mauksch M, Brauer M, Beckmann C, Rost M, Sperling P, Heinz E 2002 Metal-mediated reactions modeled after nature. J. Biotechnol. 90: 73-94.

Dietz KJ, Jacob S, Oelze ML, Laxa M, Tognetti V, de Miranda SM, Baier M, Finkemeier I 2006 The function of peroxiredoxins in plant organelle redox metabolism. J. Exp. Bot. 57: 1697-1709.

Ding J, Sun Y, Xiao CL, Shi K, Zhou YH, Yu JQ 2007 Physiological basis of different allelopathic reactions of cucumber and figleaf gourd plants to cinnamic acid. J. Exp. Bot. 58: 3765-3773.

Divari S, Valetti F, Caposio P, Pessione E, Cavaletto M, Griva E, Gribaudo G, Gilardi G, Giunta C 2003 The oxygenase component of phenol hydroxylase from Acinetobacter radioresistens S13. Eur. J. Biochem. 270: 2244-2253.

Dixit R, Cyr R 2003 Cell damage and reactive oxygen species production induced by fluorescence microscopy: effect on mitosis and guidelines for non-invasive fluorescence microscopy. Plant J. 36: 280-290.

Djajanegara I, Finnegan PM, Mathieu C, McCabe T, Whelan J, Day DA 2002 Regulation of alternative oxidase gene expression in soybean. Plant Mol. Biol. 50: 735-742.

Dmitrieva NI, Burg MB 2007 High NaCl promotes cellular senescence. Cell Cycle 6: 3108-3113.

Donald SP, Sun XY, Hu CA, Yu J, Mei JM, Valle D, Phang JM 2001 Proline oxidase, encoded by p53-induced gene-6, catalyzes the generation of proline-dependent reactive oxygen species. Cancer Res. 61: 1810-1815.

Dong KK, Damaghi N, Kibitel J, Canning MT, Smiles KA, Yarosh DB 2007 A comparison of the relative antioxidant potency of L-ergothioneine and idebenone. J. Cosmet. Dermatol. 6: 183-188.

Dordas C, Hasinoff BB, Rivoal J, Hill RD 2004 Class-1 hemoglobins, nitrate and NO levels in anoxic maize cell-suspension cultures. Planta 219: 66-72.

Dotterl S, Fussel U, Jurgens A, Aas G 2005 1,4-Dimethoxybenzene, a floral scent compound in willows that attracts an oligolectic bee. J. Chem. Ecol. 31: 2993-2998.

Douce R, Neuburger M 1999 Biochemical dissection of photorespiration. Curr. Opin. Plant Biol. 2: 214-222.

Downie AB, Dirk LM, Xu Q, Drake J, Zhang D, Dutt M, Butterfield A, Geneve RR, Corum JW 3rd, Lindstrom KG, Snyder JC 2004 A physical, enzymatic, and genetic characterization of perturbations in the seeds of the brownseed tomato mutants. J. Exp. Bot. 55: 961-973.

Downie AB, Zhang D, Dirk LM, Thacker RR, Pfeiffer JA, Drake JL, Levy AA, Butterfield DA, Buxton JW, Snyder JC 2003 Communication between the maternal testa and the embryo and/or endosperm affect testa attributes in tomato. Plant Physiol. 133: 145-160.

Doyle DA, Cabral JM, Pfuetzner RA, Kuo A, Gulbis JM, Cohen SL, Chait BT, MacKinnon R 1998 The structure of the potassium channel: molecular basis of K+ conduction and selectivity. Science 280: 69-77.

Draczynska-Lusiak B, Brown OR 1994 Asparagine synthetase: an oxidant-sensitive enzyme in Escherichia coli. Microbios 77: 141-152.

Drake J, Kanski J, Varadarajan S, Tsoras M, Butterfield DA 2002 Elevation of brain glutathione by gamma-glutamylcysteine ethyl ester protects against peroxynitrite-induced oxidative stress. J. Neurosci. Res. 68: 776-784.

Drew DP, Lunde C, Lahnstein J, Fincher GB 2007 Heterologous expression of cDNAs encoding monodehydroascorbate reductases from the moss, Physcomitrella patens and characterization of the expressed enzymes. Planta 225: 945-954.

Drincovich MF, Casati P, Andreo CS, Chessin SJ, Franceschi VR, Edwards GE, Ku MS 1998 Evolution of C4 photosynthesis in Flaveria species. Isoforms of NADP-malic enzyme. Plant Physiol. 117: 733-744.

Du L, Halkier BA 1996 Isolation of a microsomal enzyme system involved in glucosinolate biosynthesis from seedlings of Tropaeolum majus L. Plant Physiol. 111: 831-837.

Dubbs WE, Grimes HD 2000 Specific lipoxygenase isoforms accumulate in distinct regions of soybean pod walls and mark a unique cell layer. Plant Physiol. 123: 1269-1280.

Durner J, Gailus V, Boger P 1994 The oxygenase reaction of acetolactate synthase detected by chemiluminescence. FEBS Lett. 354: 71-73.

Durrant WE, Rowland O, Piedras P, Hammond-Kosack KE, Jones JD 2000 cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell 12: 963-977.

Dyer JM, Chapital DC, Kuan JC, Mullen RT, Turner C, McKeon TA, Pepperman AB 2002 Molecular analysis of a bifunctional fatty acid conjugase/desaturase from tung. Implications for the evolution of plant fatty acid diversity. Plant Physiol. 130: 2027-2038.

Eckardt NA, Snyder GW, Portis AR Jr, Orgen WL 1997 Growth and photosynthesis under high and low irradiance of Arabidopsis thaliana antisense mutants with reduced ribulose-1,5-bisphosphate carboxylase/oxygenase activase content. Plant Physiol. 113: 575-586.

Eichelmann H, Laisk A 1999 Ribulose-1,5-bisphosphate carboxylase/oxygenase content, assimilatory charge, and mesophyll conductance in leaves. Plant Physiol. 119: 179-190.

Einset J, Winge P, Bones AM, Connolly EL 2008 The FRO2 ferric reductase is required for glycine betaine's effect on chilling tolerance in Arabidopsis root. Physiol. Plant. May 30 [Epub ahead of print].

Else MA, Taylor JM, Atkinson CJ 2006 Anti-transpirant activity in xylem sap from flooded tomato (Lycopersicon esculentum Mill.) plants is not due to pH-mediated redistributions of root- or shoot-sourced ABA. J. Exp. Bot. 57: 3349-3357.

Emborg TJ, Walker JM, Noh B, Vierstra RD 2006 Multiple heme oxygenase family members contribute to the biosynthesis of the phytochrome chromophore in Arabidopsis. Plant Physiol. 140: 856-868.

Ensign SA, Allen JR 2003 Aliphatic epoxide carboxylation. Annu. Rev. Biochem. 72: 55-76.

Ettinger WF, Clear AM, Fanning KJ, Peck ML 1999 Identification of a Ca2+/H+ antiport in the plant chloroplast thylakoid membrane. Plant Physiol. 119: 1379-1386.

Evans NH, McAinsh MR, Hetherington AM, Knight MR 2005 ROS perception in Arabidopsis thaliana: the ozone-induced calcium response. Plant J. 41: 615-626.

Everard JD, Franceschi VR, Loescher WH 1993 Mannose-6-phosphate reductase, a key enzyme in photoassimilate partitioning, is abundant and located in the cytosol of photosynthetically active cells of celery (Apium graveolens L.) source leaves. Plant Physiol. 102: 345-356.

F'guyer S, Afaq F, Mukhtar H 2003 Photochemoprevention of skin cancer by botanical agents. Photodermatol. Photoimmunol. Photomed. 19: 56-72.

Fabisiak JP, Tyurin VA, Tyurina YY, Borisenko GG, Korotaeva A, Pitt BR, Lazo JS, Kagan VE 1999 Redox regulation of copper-metallothionein. Arch. Biochem. Biophys. 363: 171-181.

Fahey JW, Zhang Y, Talalay P 1997 Broccoli sprouts: an exceptionally rich source of inducers of enzymes that protect against chemical carcinogens. Proc. Natl. Acad. Sci. U.S.A. 94: 10367-10372.

Fait A, Yellin A, Fromm H 2005 GABA shunt deficiencies and accumulation of reactive oxygen intermediates: insight from Arabidopsis mutants. FEBS Lett. 579: 415-420.

Fan F, Gadda G 2005 Oxygen- and temperature-dependent kinetic isotope effects in choline oxidase: correlating reversible hydride transfer with environmentally enhanced tunneling. J. Am. Chem. Soc. 127: 17954-17961.

Fang J, Chai C, Qian Q, Li C, Tang J, Sun L, Huang Z, Guo X, Sun C, Liu M, Zhang Y, Lu Q, Wang Y, Lu C, Han B, Chen F, Cheng Z, Chu C 2008 Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. Plant J. 54: 177-189.

Farag MA, Fokar M, Abd H, Zhang H, Allen RD, Pare PW 2005 (Z)-3-Hexenol induces defense genes and downstream metabolites in maize. Planta 220: 900-909.

Farage PK, McKee IF, Long SP 1998 Does a low nitrogen supply necessarily lead to acclimation of photosynthesis to elevated CO2? Plant Physiol. 118: 573-580.

Farmer EE, Almeras E, Krishnamurthy V 2003 Jasmonates and related oxylipins in plant responses to pathogenesis and herbivory. Curr. Opin. Plant Biol. 6: 372-378.

Farrant JM, Vander Willigen C, Loffell DA, Bartsch S, Whittaker A 2003 An investigation into the role of light during desiccation of three angiosperm resurrection plants. Plant Cell Environ. 26: 1275-1286.

Fath A, Bethke P, Beligni V, Jones R 2002 Active oxygen and cell death in cereal aleurone cells. J. Exp. Bot. 53: 1273-1282.

Fauteux F, Chain F, Belzile F, Menzies JG, Belanger RR 2006 The protective role of silicon in the Arabidopsis-powdery mildew pathosystem. Proc. Natl. Acad. Sci. U.S.A. 103: 17554-17559.

Feijo JA, Costa SS, Prado AM, Becker JD, Certal AC 2004 Signalling by tips. Curr. Opin. Plant Biol. 7: 589-598.

Fellbrich G, Romanski A, Varet A, Blume B, Brunner F, Engelhardt S, Felix G, Kemmerling B, Krzymowska M, Nurnberger T 2002 NPP1, a Phytophthora-associated trigger of plant defense in parsley and Arabidopsis. Plant J. 32: 375-390.

Feller U, Anders I, Mae T 2008 Rubiscolytics: fate of Rubisco after its enzymatic function in a cell is terminated. J. Exp. Bot. 59: 1615-1624.

Fernandez-Checa JC, Kaplowitz N, Garcia-Ruiz C, Colell A 1998 Mitochondrial glutathione: importance and transport. Semin. Liver Dis. 18: 389-401.

Fernandez-Irigoyen J, Santamaria M, Sanchez-Quiles V, Latasa MU, Santamaría E, Munoz J, Sanchez Del Pino MM, Valero ML, Prieto J, Avila MA, Corrales FJ 2008 Redox regulation of methylthioadenosine phosphorylase in liver cells: molecular mechanism and functional implications. Biochem. J. 411: 457-465.

Fetzner S 2000 Enzymes involved in the aerobic bacterial degradation of N-heteroaromatic compounds: molybdenum hydroxylases and ring-opening 2,4-dioxygenases. Naturwissenschaften 87: 59-69.

Filkowski J, Kovalchuk O, Kovalchuk I 2004 Genome stability of vtc1, tt4, and tt5 Arabidopsis thaliana mutants impaired in protection against oxidative stress. Plant J. 38: 60-69.

Fiorani F, Umbach AL, Siedow JN 2005 The alternative oxidase of plant mitochondria is involved in the acclimation of shoot growth at low temperature. A study of Arabidopsis AOX1a transgenic plants. Plant Physiol. 139: 1795-1805.

Fiscus EL, Booker FL, Burkey KO 2005 Crop responses to ozone: uptake, modes of action, carbon assimilation and partitioning. Plant Cell Environ. 28: 997-1011.

Flachmann R, Zhu G, Jensen RG, Bohnert HJ 1997 Mutations in the small subunit of ribulose-1,5-bisphosphate carboxylase/ oxygenase increase the formation of the misfire product xylulose-1,5-bisphosphate. Plant Physiol. 114: 131-136.

Flint DH, Smyk-Randall E, Tuminello JF, Draczynska-Lusiak B, Brown OR 1993 The inactivation of dihydroxy-acid dehydratase in Escherichia coli treated with hyperbaric oxygen occurs because of the destruction of its Fe-S cluster, but the enzyme remains in the cell in a form that can be reactivated. J. Biol. Chem. 268: 25547-25552.

Flors C, Fryer MJ, Waring J, Reeder B, Bechtold U, Mullineaux PM, Nonell S, Wilson MT, Baker NR 2006 Imaging the production of singlet oxygen in vivo using a new fluorescent sensor, Singlet Oxygen Sensor Green(R). J. Exp. Bot. 57: 1725-1734.

Forlani G 2002 Differential expression of 5-enol-pyruvyl-shikimate-3-phosphate synthase isoforms in elicitor-treated, cultured maize cells. Funct. Plant Biol. 29: 1483-1490.

Forquer I, Covian R, Bowman MK, Trumpower B, Kramer DM 2006 Similar transition states mediate the Q-cycle and superoxide production by the cytochrome bc1 complex. J. Biol. Chem. 281: 38459-38465.

Fos M, Nuez F, Garcia-Martinez JL 2000 The gene pat-2, which induces natural parthenocarpy, alters the gibberellin content in unpollinated tomato ovaries. Plant Physiol. 122: 471-480.

Foyer CH, Noctor G 2005 Oxidant and antioxidant signalling in plants: a re-evaluation of the concept of oxidative stress in a physiological context. Plant Cell Environ. 28: 1056-1071.

Fritze IM, Linden L, Freigang J, Auerbach G, Huber R, Steinbacher S 2004 The crystal structures of Zea mays and Arabidopsis 4-hydroxyphenylpyruvate dioxygenase. Plant Physiol. 134: 1388-1400.

Fryer MJ, Andrews JR, Oxborough K, Blowers DA, Baker NR 1998 Relationship between CO2 assimilation, photosynthetic electron transport, and active O2 metabolism in leaves of maize in the field during periods of low temperature. Plant Physiol. 116: 571-580.

Fryer MJ, Ball L, Oxborough K, Karpinski S, Mullineaux PM, Baker NR 2003 Control of Ascorbate Peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organisation of Arabidopsis leaves. Plant J. 33: 691-705.

Fujibe T, Saji H, Arakawa K, Yabe N, Takeuchi Y, Yamamoto KT 2004 A methyl viologen-resistant mutant of Arabidopsis, which is allelic to ozone-sensitive rcd1, is tolerant to supplemental ultraviolet-B irradiation. Plant Physiol. 134: 275-285.

Fujs S, Gazdag Z, Poljsak B, Stibilj V, Milacic R, Pesti M, Raspor P, Batic M 2005 The oxidative stress response of the yeast Candida intermedia to copper, zinc, and selenium exposure. J. Basic Microbiol. 45: 125-135.

Gadda G, Powell NL, Menon P 2004 The trimethylammonium headgroup of choline is a major determinant for substrate binding and specificity in choline oxidase. Arch. Biochem. Biophys. 430: 264-273.

Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, Shulaev V, Apel K, Inze D, Mittler R, Van Breusegem F 2006 Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141: 436-445.

Galbiati M, Simoni L, Pavesi G, Cominelli E, Francia P, Vavasseur A, Nelson T, Bevan M, Tonelli C 2008 Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells. Plant J. 53: 750-762.

Gallardo K, Le Signor C, Vandekerckhove J, Thompson RD, Burstin J 2003 Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation. Plant Physiol. 133: 664-682.

Galpaz N, Ronen G, Khalfa Z, Zamir D, Hirschberg J 2006 A chromoplast-specific carotenoid biosynthesis pathway is revealed by cloning of the tomato white-flower locus. Plant Cell 18: 1947-1960.

Gao D, Tawa R, Masaki H, Okano Y, Sakurai H 1998 Protective effects of baicalein against cell damage by reactive oxygen species. Chem. Pharm. Bull. (Tokyo) 46: 1383-1387.

Gapper C, Dolan L 2006 Control of plant development by reactive oxygen species. Plant Physiol. 141: 341-345.

Garbayo I, Leon R, Vigara J, Vilchez C 2002 Inhibition of nitrate consumption by nitrite in entrapped Chlamydomonas reinhardtii cells. Bioresour. Technol. 81: 207-215.

Garnczarska M, Bednarski W 2004 Effect of a short-term hypoxic treatment followed by re-aeration on free radicals level and antioxidative enzymes in lupine roots. Plant Physiol. Biochem. 42: 233-240.

Garnier L, Simon-Plas F, Thuleau P, Agnel JP, Blein JP, Ranjeva R, Montillet JL 2006 Cadmium affects tobacco cells by a series of three waves of reactive oxygen species that contribute to cytotoxicity. Plant Cell Environ. 29: 1956-1969.

Garreton V, Carpinelli J, Jordana X, Holuigue L 2002 The as-1 promoter element is an oxidative stress-responsive element and salicylic acid activates it via oxidative species. Plant Physiol. 130: 1516-1526.

Gayen K, Venkatesh KV 2006 Analysis of optimal phenotypic space using elementary modes as applied to Corynebacterium glutamicum. BMC Bioinformatics 7: 445.

Gebhardt YH, Witte S, Steuber H, Matern U, Martens S 2007 Evolution of flavone synthase I from parsley flavanone 3beta-hydroxylase by site-directed mutagenesis. Plant Physiol. 144: 1442-1454.

Geigenberger P, Fernie AR, Gibon Y, Christ M, Stitt M 2000 Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Biol. Chem. 381: 723-740.

Geigenberger P, Stitt M, Fernie AR 2004 Metabolic control analysis and regulation of the conversion of sucrose to starch in growing potato tubers. Plant Cell Environ. 27: 655-673.

Geisler M, Kleczkowski LA, Karpinski S 2006 A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis. Plant J. 45: 384-398.

Gerber IB, Zeidler D, Durner J, Dubery IA 2004 Early perception responses of Nicotiana tabacum cells in response to lipopolysaccharides from Burkholderia cepacia. Planta 218: 647-657.

Ghanem M, Gadda G 2005 On the catalytic role of the conserved active site residue His466 of choline oxidase. Biochemistry 44: 893-904.

Giddings G, Allison G, Brooks D, Carter A 2000 Transgenic plants as factories for biopharmaceuticals. Nat. Biotechnol. 18: 1151-1155.

Gill HS, Eisenberg D 2001 The crystal structure of phosphinothricin in the active site of glutamine synthetase illuminates the mechanism of enzymatic inhibition. Biochemistry 40: 1903-1912.

Gilliland A, Singh DP, Hayward JM, Moore CA, Murphy AM, York CJ, Slator J, Carr JP 2003 Genetic modification of alternative respiration has differential effects on antimycin A-induced versus salicylic acid-induced resistance to tobacco mosaic virus. Plant Physiol. 132: 1518-1528.

Ginsburg S, Schellenberg M, Matile P 1994 Cleavage of chlorophyll-porphyrin. Requirement for reduced ferredoxin and oxygen. Plant Physiol. 105: 545-554.

Giordano CV, Galatro A, Puntarulo S, Ballare CL 2004 The inhibitory effects of UV-B radiation (280-315 nm) on Gunnera magellanica growth correlate with increased DNA damage but not with oxidative damage to lipids. Plant Cell Environ. 27: 1415-1423.

Giordano M, Beardall J, Raven JA 2005 CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu. Rev. Plant Biol. 56: 99-131.

Giuffre A, Forte E, Brunori M, Sarti P 2005 Nitric oxide, cytochrome c oxidase and myoglobin: competition and reaction pathways. FEBS Lett. 579: 2528-2532.

Go EK, Jung KJ, Kim JM, Lim H, Lim HK, Yu BP, Chung HY 2007 Betaine modulates age-related NF-kappaB by thiol-enhancing action. Biol. Pharm. Bull. 30: 2244-2249.

Golding AJ, Johnson GN 2003 Down-regulation of linear and activation of cyclic electron transport during drought. Planta 218: 107-114.

Golisz A, Sugano M, Fujii Y 2008 Microarray expression profiling of Arabidopsis thaliana L. in response to allelochemicals identified in buckwheat. J. Exp. Bot. 59: 3099-3109.

Gomez Ros LV, Paradiso A, Gabaldon C, Pedreno MA, de Gara L, Ros Barcelo A 2006 Two distinct cell sources of H2O2 in the lignifying Zinnia elegans cell culture system. Protoplasma 227: 175-183.

Gomez-Casanovas N, Blanc-Betes E, Gonzalez-Meler MA, Azcon-Bieto J 2007 Changes in respiratory mitochondrial machinery and cytochrome and alternative pathway activities in response to energy demand underlie the acclimation of respiration to elevated CO2 in the invasive Opuntia ficus-indica. Plant Physiol. 145: 49-61.

Gong HJ, Zhu XY, Chen KM, Wang SM, Zhang CL 2005 Silicon alleviates oxidative damage of wheat plants in pots under drought. Plant Sci. 169: 313-321.

Gonzalez JC, Peariso K, Penner-Hahn JE, Matthews RG 1996 Cobalamin-independent methionine synthase from Escherichia coli: a zinc metalloenzyme. Biochemistry 35: 12228-12234.

Gonzalez-Meler MA, Ribas-Carbo M, Giles L, Siedow JN 1999 The effect of growth and measurement temperature on the activity of the alternative respiratory pathway. Plant Physiol. 120: 765-772.

Gorg B, Bidmon HJ, Keitel V, Foster N, Goerlich R, Schliess F, Haussinger D 2006 Inflammatory cytokines induce protein tyrosine nitration in rat astrocytes. Arch. Biochem. Biophys. 449: 104-114.

Goslings D, Meskauskiene R, Kim C, Lee KP, Nater M, Apel K 2004 Concurrent interactions of heme and FLU with Glu tRNA reductase (HEMA1), the target of metabolic feedback inhibition of tetrapyrrole biosynthesis, in dark- and light-grown Arabidopsis plants. Plant J. 40: 957-967.

Gould KS 2004 Nature's Swiss army knife: the diverse protective roles of anthocyanins in leaves. J. Biomed. Biotechnol. 2004: 314-320.

Gould KS, Lamotte O, Klinguer A, Pugin A, Wendehenne D 2003 Nitric oxide production in tobacco leaf cells: a generalized stress response?. Plant Cell Environ. 26: 1851-1862.

Gould KS, McKelvie J, Markham KR 2002 Do anthocyanins function as antioxidants in leaves? Imaging of H2O2 in red and green leaves after mechanical injury. Plant Cell Environ. 25: 1261-1269.

Goyer A, Haslekas C, Miginiac-Maslow M, Klein U, Le Marechal P, Jacquot JP, Decottignies P 2002 Isolation and characterization of a thioredoxin-dependent peroxidase from Chlamydomonas reinhardtii. Eur. J. Biochem. 269: 272-282.

Grace SC, Logan BA 2000 Energy dissipation and radical scavenging by the plant phenylpropanoid pathway. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 355: 1499-1510.

Graham CM, Ehrenshaft M, Hausner G, Reid DM 2004 A highly conserved gene for vitamin B biosynthesis may have consequences for stress and hormone responses in plants. Physiol. Plant. 121: 8-14.

Grant JJ, Loake GJ 2000 Role of reactive oxygen intermediates and cognate redox signaling in disease resistance. Plant Physiol. 124: 21-30.

Grant JJ, Yun BW, Loake GJ 2000 Oxidative burst and cognate redox signalling reported by luciferase imaging: identification of a signal network that functions independently of ethylene, SA and Me-JA but is dependent on MAPKK activity. Plant J. 24: 569-582.

Green R, Fluhr R 1995 UV-B-induced PR-1 accumulation is mediated by active oxygen species. Plant Cell 7: 203-212.

Grossman A, Takahashi H 2001 Macronutrient utilization by photosynthetic eukaryotes and the fabric of interactions. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 163-210.

Groten K, Vanacker H, Dutilleul C, Bastian F, Bernard S, Carzaniga R, Foyer CH 2005 The roles of redox processes in pea nodule development and senescence. Plant Cell Environ. 28: 1293-1304.

Gueta-Dahan Y, Yaniv Z, Zilinskas BA, Ben-Hayyim G 1997 Salt and oxidative stress: similar and specific responses and their relation to salt tolerance in citrus. Planta 203: 460-469.

Guo FQ, Crawford NM 2005 Arabidopsis nitric oxide synthase1 is targeted to mitochondria and protects against oxidative damage and dark-induced senescence. Plant Cell 17: 3436-3450.

Guo Z, Nakagawara S, Sumitani K, Ohta Y 1993 Effect of intracellular glutathione level on the production of 6-methoxymellein in cultured carrot (Daucus carota) cells. Plant Physiol. 102: 45-51.

Guo ZJ, Lamb C, Dixon RA 1998 Potentiation of the oxidative burst and isoflavonoid phytoalexin accumulation by serine protease inhibitors. Plant Physiol. 118: 1487-1494.

Gupta AS, Webb RP, Holaday AS, Allen RD 1993 Overexpression of superoxide dismutase protects plants from oxidative stress. Induction of ascorbate peroxidase in superoxide dismutase-overexpressing plants. Plant Physiol. 103: 1067-1073.

Guy JE, Abreu IA, Moche M, Lindqvist Y, Whittle E, Shanklin J 2006 A single mutation in the castor {Delta}9-18:0-desaturase changes reaction partitioning from desaturation to oxidase chemistry. Proc. Natl. Acad. Sci. U.S.A. 103: 17220-17224.

Haenzelmann P, Hernandez HL, Menzel C, Garcia-Serres R, Huynh BH, Johnson MK, Mendel RR, Schindelin H 2004 Characterization of MOCS1A, an oxygen-sensitive iron-sulfur protein involved in human molybdenum cofactor biosynthesis. J. Biol. Chem. 279: 34721-34732.

Hajduch M, Ganapathy A, Stein JW, Thelen JJ 2005 A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Plant Physiol. 137: 1397-1419.

Hakemian AS, Rosenzweig AC 2007 The biochemistry of methane oxidation. Annu. Rev. Biochem. 76: 223-241.

Halitschke R, Ziegler J, Keinanen M, Baldwin IT 2004 Silencing of hydroperoxide lyase and allene oxide synthase reveals substrate and defense signaling crosstalk in Nicotiana attenuata. Plant J. 40: 35-46.

Halliwell B 2003 Oxidative stress in cell culture: an under-appreciated problem?. FEBS Lett. 540: 3-6.

Halterman DA, Martin GB 1997 Signal recognition and transduction involved in plant disease resistance. Essays Biochem. 32: 87-99.

Hamelet J, Seltzer V, Petit E, Noll C, Andreau K, Delabar JM, Janel N 2008 Cystathionine beta synthase deficiency induces catalase-mediated hydrogen peroxide detoxification in mice liver. Biochim. Biophys. Acta 1782: 482-488.

Han T, Kang SH, Park JS, Lee HK, Brown MT 2008 Physiological responses of Ulva pertusa and U. armoricana to copper exposure. Aquat. Toxicol. 86: 176-184.

Han YH, Kim HS, Kim JM, Kim SK, Yu DY, Moon EY 2005 Inhibitory role of peroxiredoxin II (Prx II) on cellular senescence. FEBS Lett. 579: 4897-4902.

Hancock J, Desikan R, Harrison J, Bright J, Hooley R, Neill S 2006 Doing the unexpected: proteins involved in hydrogen peroxide perception. J. Exp. Bot. 57: 1711-1718.

Hansen CH, Du L, Naur P, Olsen CE, Axelsen KB, Hick AJ, Pickett JA, Halkier BA 2001 CYP83b1 is the oxime-metabolizing enzyme in the glucosinolate pathway in Arabidopsis. J. Biol. Chem. 276: 24790-24796.

Hanson TE, Tabita FR 2001 A ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress. Proc. Natl. Acad. Sci. U.S.A. 98: 4397-4402.

Harborne NR, Griffiths L, Busby SJ, Cole JA 1992 Transcriptional control, translation and function of the products of the five open reading frames of the Escherichia coli nir operon. Mol. Microbiol. 6: 2805-2813.

Harding SA, Oh SH, Roberts DM 1997 Transgenic tobacco expressing a foreign calmodulin gene shows an enhanced production of active oxygen species. EMBO J. 16: 1137-1144.

Harding SA, Roberts DM 1998 Incompatible pathogen infection results in enhanced reactive oxygen and cell death responses in transgenic tobacco expressing a hyperactive mutant calmodulin. Planta 206: 253-258.

Harpel MR, Larimer FW, Hartman FC 2002 Multifaceted roles of Lys166 of ribulose-bisphosphate carboxylase/oxygenase as discerned by product analysis and chemical rescue of site-directed mutants. Biochemistry 41: 1390-1397.

Haslekas C, Stacy RA, Nygaard V, Culianez-Macia FA, Aalen RB 1998 The expression of a peroxiredoxin antioxidant gene, AtPer1, in Arabidopsis thaliana is seed-specific and related to dormancy. Plant Mol. Biol. 36: 833-845.

Haslekas C, Viken MK, Grini PE, Nygaard V, Nordgard SH, Meza TJ, Aalen RB 2003 Seed 1-cysteine peroxiredoxin antioxidants are not involved in dormancy, but contribute to inhibition of germination during stress. Plant Physiol. 133: 1148-1157.

Hauser BA, Sun K, Oppenheimer DG, Sage TL 2006 Changes in mitochondrial membrane potential and accumulation of reactive oxygen species precede ultrastructural changes during ovule abortion. Planta 223: 492-499.

Hausler RE, Hirsch HJ, Kreuzaler F, Peterhansel C 2002 Overexpression of C4-cycle enzymes in transgenic C3 plants: a biotechnological approach to improve C3 photosynthesis. J. Exp. Bot. 53: 591-607.

Havaux M, Guedeney G, Hagemann M, Yeremenko N, Matthijs HC, Jeanjean R. 2005 The chlorophyll-binding protein IsiA is inducible by high light and protects the cyanobacterium Synechocystis PCC6803 from photooxidative stress. FEBS Lett. 579: 2289-2293.

Heath MC 2000 Hypersensitive response-related death. Plant Mol. Biol. 44: 321-334.

Heber U, Lange OL, Shuvalov VA 2006 Conservation and dissipation of light energy as complementary processes: homoiohydric and poikilohydric autotrophs. J. Exp. Bot. 57: 1211-1223.

Heese A, Ludwig AA, Jones JD 2005 Rapid phosphorylation of a syntaxin during the Avr9/Cf-9-race-specific signaling pathway. Plant Physiol. 138: 2406-2416.

Hendgen-Cotta UB, Merx MW, Shiva S, Schmitz J, Becher S, Klare JP, Steinhoff HJ, Goedecke A, Schrader J, Gladwin MT, Kelm M, Rassaf T 2008 Nitrite reductase activity of myoglobin regulates respiration and cellular viability in myocardial ischemia-reperfusion injury. Proc. Natl. Acad. Sci. U.S.A 105: 10256-10261.

Hensley K, Floyd RA 2002 Reactive oxygen species and protein oxidation in aging: A look back, a look ahead. Arch. Biochem. Biophys. 397: 377-383.

Herouart D, Van Montagu M, Inze D 1994 Developmental and environmental regulation of the Nicotiana plumbaginifolia cytosolic Cu/Zn-superoxide dismutase promoter in transgenic tobacco. Plant Physiol. 104: 873-880.

Herrero A, Flores E, Guerrero MG 1984 Regulation of the nitrate reductase level in Anacystis nidulans: activity decay under nitrogen stress. Arch. Biochem. Biophys. 234: 454-459.

Hertz L 2004 Intercellular metabolic compartmentation in the brain: past, present and future. Neurochem. Int. 45: 285-296.

Hideg E, Nagy T, Oberschall A, Dudits D, Vass I 2003 Detoxification function of aldose/aldehyde reductase during drought and ultraviolet-B (280-320 nm) stresses. Plant Cell Environ. 26: 513-522.

Hidema J, Kumagai T 2006 Sensitivity of rice to ultraviolet-B radiation. Ann. Bot. (Lond.) 97: 933-942.

Hildebrandt U, Regvar M, Bothe H 2007 Arbuscular mycorrhiza and heavy metal tolerance. Phytochemistry 68: 139-146.

Himelblau E, Mira H, Lin SJ, Culotta VC, Penarrubia L, Amasino RM 1998 Identification of a functional homolog of the yeast copper homeostasis gene ATX1 from Arabidopsis. Plant Physiol. 117: 1227-1234.

Hirasawa K, Amano T, Shioi Y 2004 Lipid-binding form is a key conformation to induce a programmed cell death initiated in tobacco BY-2 cells by a proteinaceous elicitor of cryptogein. Physiol. Plant. 121: 196-203.

Hirayama S, Ueda R, Sugata K 1996 Evaluation of active oxygen effect on photosynthesis of Chlorella vulgaris. Free Radic. Res. 25: 247-254.

Hoffmann EK, Pedersen SF 2006 Sensors and signal transduction pathways in vertebrate cell volume regulation. Contrib. Nephrol. 152: 54-104.

Hofgen R, Kreft O, Willmitzer L, Hesse H 2001 Manipulation of thiol contents in plants. Amino Acids 20: 291-299.

Hong CY, Hsu YT, Tsai YC, Kao CH 2007 Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl. J. Exp. Bot. 58: 3273-3283.

Hong JK, Yun BW, Kang JG, Raja MU, Kwon E, Sorhagen K, Chu C, Wang Y, Loake GJ 2008 Nitric oxide function and signalling in plant disease resistance. J. Exp. Bot. 59: 147-154.

Horemans N, Raeymaekers T, Van Beek K, Nowocin A, Blust R, Broos K, Cuypers A, Vangronsveld J, Guisez Y 2007 Dehydroascorbate uptake is impaired in the early response of Arabidopsis plant cell cultures to cadmium. J. Exp. Bot. 58: 4307-4317.

Horsburgh MJ, Wharton SJ, Karavolos M, Foster SJ 2002 Manganese: elemental defence for a life with oxygen. Trends Microbiol. 10: 496-501.

Hortensteiner S, Feller U 2002 Nitrogen metabolism and remobilization during senescence. J. Exp. Bot. 53: 927-937.

Howe GA, Schilmiller AL 2002 Oxylipin metabolism in response to stress. Curr. Opin. Plant Biol. 5: 230-236.

Hsu YT, Kao CH 2004 Cadmium toxicity is reduced by nitric oxide in rice leaves. Plant Growth Regul. 42: 227-238.

Huang X, Von Rad U, Durner J 2002 Nitric oxide induces transcriptional activation of the nitric oxide-tolerant alternative oxidase in Arabidopsis suspension cells. Planta 215: 914-923.

Huckelhoven R, Kogel KH 2003 Reactive oxygen intermediates in plant-microbe interactions: Who is who in powdery mildew resistance? Planta 216: 891-902.

Hurth MA, Suh SJ, Kretzschmar T, Geis T, Bregante M, Gambale F, Martinoia E, Neuhaus HE 2005 Impaired pH homeostasis in Arabidopsis lacking the vacuolar dicarboxylate transporter and analysis of carboxylic acid transport across the tonoplast. Plant Physiol. 137: 901-910.

Iba K 2002 Acclimative response to temperature stress in higher plants: approaches of gene engineering for temperature tolerance. Annu. Rev. Plant Biol. 53: 225-245.

Iigusa H, Yoshida Y, Hasunuma K 2005 Oxygen and hydrogen peroxide enhance light-induced carotenoid synthesis in Neurospora crassa. FEBS Lett. 579: 4012-4016.

Iijima R, Takahashi H, Namme R, Ikegami S, Yamazaki M 2004 Novel biological function of sialic acid (N-acetylneuraminic acid) as a hydrogen peroxide scavenger. FEBS Lett. 561: 163-166.

Imai K, Suzuki Y, Mae T, Makino A 2008 Changes in the synthesis of Rubisco in rice leaves in relation to senescence and N influx. Ann. Bot. (Lond.) 101: 135-144.

Imsande J 1999 Iron-sulfur clusters: Formation, perturbation, and physiological functions. Plant Physiol. Biochem. 37: 87-97.

Inatomi K, Slaughter JC 1975 Glutamate decarboxylase from barley embryos and roots. General properties and the occurrence of three enzymic forms. Biochem. J. 147: 479-484.

Ingle RA, Smith JA, Sweetlove LJ 2005 Responses to nickel in the proteome of the hyperaccumulator plant Alyssum lesbiacum. Biometals 18: 627-641.

Irihimovitch V, Shapira M 2000 Glutathione redox potential modulated by reactive oxygen species regulates translation of Rubisco large subunit in the chloroplast. J. Biol. Chem. 275: 16289-16295.

Ishida H, Anzawa D, Kokubun N, Makino A, Mae T 2002 Direct evidence for non-enzymatic fragmentation of chloroplastic glutamine synthetase by a reactive oxygen species. Plant Cell Environ. 25: 625-631.

Ishida H, Nishimori Y, Sugisawa M, Makino A, Mae T 1997 The large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is fragmented into 37-kDa and 16-kDa polypeptides by active oxygen in the lysates of chloroplasts from primary leaves of wheat. Plant Cell Physiol. 38: 471-479.

Ishikawa T, Morimoto Y, Madhusudhan R, Sawa Y, Shibata H, Yabuta Y, Nishizawa A, Shigeoka S 2005 Acclimation to diverse environmental stresses caused by a suppression of cytosolic ascorbate peroxidase in tobacco BY-2 cells. Plant Cell Physiol. 46: 1264-1271.

Israelsson M, Mellerowicz E, Chono M, Gullberg J, Moritz T 2004 Cloning and overproduction of gibberellin 3-oxidase in hybrid aspen trees. Effects on gibberellin homeostasis and development. Plant Physiol. 135: 221-230.

Ito S, Ihara T, Tamura H, Tanaka S, Ikeda T, Kajihara H, Dissanayake C, Abdel-Motaal FF, El-Sayed MA 2007 alpha-Tomatine, the major saponin in tomato, induces programmed cell death mediated by reactive oxygen species in the fungal pathogen Fusarium oxysporum. FEBS Lett. 581: 3217-3222.

Ivlev AA 2002 Carbon isotope (13C/12C) effect of photorespiration in photosynthetic organisms. Evidence for existence, probable mechanism. Biofizika 47: 55-70.

Ivleva NB, Shestakov SV, Pakrasi HB 2000 The carboxyl-terminal extension of the precursor D1 protein of photosystem II is required for optimal photosynthetic performance of the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol. 124: 1403-1412.

Jabs T, Dietrich RA, Dangl JL 1996 Initiation of runaway cell death in an Arabidopsis mutant by extracellular superoxide. Science 273: 1853-1856.

Jain V, Kaiser W, Huber SC 2008 Cytokinin inhibits the proteasome-mediated degradation of carbonylated proteins in Arabidopsis leaves. Plant Cell Physiol. 49: 843-852.

Jalloul A, Montillet JL, Assigbetse K, Agnel JP, Delannoy E, Triantaphylides C, Daniel JF, Marmey P, Geiger JP, Nicole M 2002 Lipid peroxidation in cotton: Xanthomonas interactions and the role of lipoxygenases during the hypersensitive reaction. Plant J. 32: 1-12.

Jambunathan N, Mahalingam R 2006 Analysis of Arabidopsis growth factor gene 1 (GFG1) encoding a nudix hydrolase during oxidative signaling. Planta 224: 1-11.

Janssen M, Tramper J, Mur LR, Wijffels RH 2003 Enclosed outdoor photobioreactors: Light regime, photosynthetic efficiency, scale-up, and future prospects. Biotechnol. Bioeng. 81: 193-210.

Janzik I, Preiskowski S, Kneifel H 2005 Ozone has dramatic effects on the regulation of the prechorismate pathway in tobacco (Nicotiana tabacum L. cv. Bel W3). Planta 223: 20-27.

Jennings DB, Daub ME, Pharr DM, Williamson JD 2002 Constitutive expression of a celery mannitol dehydrogenase in tobacco enhances resistance to the mannitol-secreting fungal pathogen Alternaria alternata. Plant J. 32: 41-49.

Jennings DB, Ehrenshaft M, Pharr DM, Williamson JD 1998 Roles for mannitol and mannitol dehydrogenase in active oxygen-mediated plant defense. Proc. Natl. Acad. Sci. U.S.A. 95: 15129-15133.

Jhon DY, Kim K, Byun SM 1991 The sites of cleavage on Escherichia coli glutamine synthetase by dithiothreitol, Fe(III) and O2. Biofactors 3: 121-125.

Jiang J, Holm RH 2005 Reaction systems related to dissimilatory nitrate reductase: nitrate reduction mediated by bis(dithiolene)tungsten complexes. Inorg. Chem. 44: 1068-1072.

Jiang M, Zhang J 2002 Water stress-induced abscisic acid accumulation triggers the increased generation of reactive oxygen species and up-regulates the activities of antioxidant enzymes in maize leaves. J. Exp. Bot. 53: 2401-2410.

Jiang M, Zhang J 2002 Involvement of plasma-membrane NADPH oxidase in abscisic acid- and water stress-induced antioxidant defense in leaves of maize seedlings. Planta 215: 1022-1030.

Jiang M, Zhang J 2003 Cross-talk between calcium and reactive oxygen species originated from NADPH oxidase in abscisic acid-induced antioxidant defence in leaves of maize seedlings. Plant Cell Environ. 26: 929-939.

Jiang Y, Yang B, Harris NS, Deyholos MK 2007 Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J. Exp. Bot. 58: 3591-3607.

Jimenez C, Pick U 1993 Differential reactivity of [beta]-carotene isomers from Dunaliella bardawil toward oxygen radicals. Plant Physiol. 101: 385-390.

Jimenez-Lopez JM, Carrasco MP, Segovia JL, Marco C 2002 Hexadecylphosphocholine inhibits phosphatidylcholine biosynthesis and the proliferation of HepG2 cells. Eur. J. Biochem. 269: 4649-4655.

Jin SH, Hong J, Li XQ, Jiang DA 2006 Antisense inhibition of Rubisco activase increases Rubisco content and alters the proportion of Rubisco activase in stroma and thylakoids in chloroplasts of rice leaves. Ann. Bot. (Lond.) 97: 739-744.

Job C, Rajjou L, Lovigny Y, Belghazi M, Job D 2005 Patterns of protein oxidation in Arabidopsis seeds and during germination. Plant Physiol. 138: 790-802.

Johnson KS, Felton GW 2001 Plant phenolics as dietary antioxidants for herbivorous insects: A test with genetically modified tobacco. J. Chem. Ecol. 27: 2579-2597.

Jones MA, Raymond MJ, Yang Z, Smirnoff N 2007 NADPH oxidase-dependent reactive oxygen species formation required for root hair growth depends on ROP GTPase. J. Exp. Bot. 58: 1261-1270.

Jongebloed U, Szederkenyi J, Hartig K, Schobert C, Komor E 2004 Sequence of morphological and physiological events during natural ageing and senescence of a castor bean leaf: sieve tube occlusion and carbohydrate back-up precede chlorophyll degradation. Physiol. Plant. 120: 338-346.

Joo JH, Bae YS, Lee JS 2001 Role of auxin-induced reactive oxygen species in root gravitropism. Plant Physiol. 126: 1055-1060.

Joo JH, Wang S, Chen JG, Jones AM, Fedoroff NV 2005 Different signaling and cell death roles of heterotrimeric G protein {alpha} and {beta} subunits in the Arabidopsis oxidative stress response to ozone. Plant Cell 17: 957-970.

Joo JH, Yoo HJ, Hwang I, Lee JS, Nam KH, Bae YS 2005 Auxin-induced reactive oxygen species production requires the activation of phosphatidylinositol 3-kinase. FEBS Lett. 579: 1243-1248.

Jung S, Lee HJ, Lee Y, Kang K, Kim YS, Grimm B, Back K 2008 Toxic tetrapyrrole accumulation in protoporphyrinogen IX oxidase-overexpressing transgenic rice plants. Plant Mol. Biol. 67: 535-546.

Jung U, Zheng X, Yoon SO, Chung AS 2001 Se-methylselenocysteine induces apoptosis mediated by reactive oxygen species in HL-60 cells. Free Radic. Biol. Med. 31: 479-489.

Kacperska A 2004 Sensor types in signal transduction pathways in plant cells responding to abiotic stressors: do they depend on stress intensity?. Physiol. Plant. 122: 159-168.

Kadota Y, Watanabe T, Fujii S, Higashi K, Sano T, Nagata T, Hasezawa S, Kuchitsu K 2004 Crosstalk between elicitor-induced cell death and cell cycle regulation in tobacco BY-2 cells. Plant J. 40: 131-142.

Kalbina I, Strid A 2006 The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent gene expression in Arabidopsis. Plant Cell Environ. 29: 1783-1793.

Kamps A, Achebach S, Fedtke I, Unden G, Gotz F 2004 Staphylococcal NreB: an O2-sensing histidine protein kinase with an O-2- labile iron-sulphur cluster of the FNR type. Mol. Microbiol. 52: 713-723.

Kanevski I, Maliga P, Rhoades DF, Gutteridge S 1999 Plastome engineering of ribulose-1,5-bisphosphate carboxylase/oxygenase in tobacco to form a sunflower large subunit and tobacco small subunit hybrid. Plant Physiol. 119: 133-142.

Kangasjarvi J, Jaspers P, Kollist H 2005 Signalling and cell death in ozone-exposed plants. Plant Cell Environ. 28: 1021-1036.

Kanwischer M, Porfirova S, Bergmuller E, Dormann P 2005 Alterations in tocopherol cyclase activity in transgenic and mutant plants of Arabidopsis affect tocopherol content, tocopherol composition, and oxidative stress. Plant Physiol. 137: 713-723.

Kariola T, Brader G, Li J, Palva ET 2005 Chlorophyllase 1, a damage control enzyme, affects the balance between defense pathways in plants. Plant Cell 17: 282-294.

Karpinski S, Gabrys H, Mateo A, Karpinska B, Mullineaux PM 2003 Light perception in plant disease defence signalling. Curr. Opin. Plant Biol. 6: 390-396.

Kast P, Asif-Ullah M, Jiang N, Hilvert D 1996 Exploring the active site of chorismate mutase by combinatorial mutagenesis and selection: the importance of electrostatic catalysis. Proc. Natl. Acad. Sci. U.S.A. 93: 5043-5048.

Katsuhara M, Otsuka T, Ezaki B 2005 Salt stress-induced lipid peroxidation is reduced by glutathione S-transferase, but this reduction of lipid peroxides is not enough for a recovery of root growth in Arabidopsis. Plant Sci. 169: 369-373.

Kawai-Yamada M, Ohori Y, Uchimiya H 2004 Dissection of Arabidopsis Bax inhibitor-1 suppressing Bax-, hydrogen peroxide-, and salicylic acid-induced cell death. Plant Cell 16: 21-32.

Kawano T 2003 Roles of the reactive oxygen species-generating peroxidase reactions in plant defense and growth induction. Plant Cell Rep. 21: 829-837.

Keitel C, Adams MA, Holst T, Matzarakis A, Mayer H, Rennenberg H, Gessler A 2003 Carbon and oxygen isotope composition of organic compounds in the phloem sap provides a short-term measure for stomatal conductance of European beech (Fagus sylvatica L.). Plant Cell Environ. 26: 1157-1168.

Kengen SW, van der Oost J, de Vos WM 2003 Molecular characterization of H2O2-forming NADH oxidases from Archaeoglobus fulgidus. Eur. J. Biochem. 270: 2885-2894.

Khanday FA, Saha M, Bhat PJ 2002 Molecular characterization of MRG19 of Saccharomyces cerevisiae. Implication in the regulation of galactose and nonfermentable carbon source utilization. Eur. J. Biochem. 269: 5840-5850.

Kharade SV, Mittal N, Das SP, Sinha P, Roy N 2005 Mrg19 depletion increases S. cerevisiae lifespan by augmenting ROS defence. FEBS Lett. 579: 6809-6813.

Kiba A, Takata O, Ohnishi K, Hikichi Y 2006 Comparative analysis of induction pattern of programmed cell death and defense-related responses during hypersensitive cell death and development of bacterial necrotic leaf spots in eggplant. Planta 224: 981-994.

Kieffer F, Simon-Plas F, Maume BF, Blein JP 1997 Tobacco cells contain a protein, immunologically related to the neutrophil small G protein Rac2 and involved in elicitor-induced oxidative burst. FEBS Lett. 403: 149-153.

Kim DS, Lee IS, Jang CS, Kang SY, Park IS, Song HS, Seo YW 2005 High amino acid accumulating 5-methyltryptophan-resistant rice mutants may include an increased antioxidative response system. Physiol. Plant. 123: 302-313.

Kim JH, Kim SJ, Cho SH, Chow WS, Lee CH 2005 Photosystem I acceptor side limitation is a prerequisite for the reversible decrease in the maximum extent of P700 oxidation after short-term chilling in the light in four plant species with different chilling sensitivities. Physiol. Plant. 123: 100-107.

Kim K, Rhee SG, Stadtman ER 1985 Nonenzymatic cleavage of proteins by reactive oxygen species generated by dithiothreitol and iron. J. Biol. Chem. 260: 15394-15397.

Kim RH, Lee SM, Park JW 1998 Enhancement by copper, zinc superoxide dismutase of DNA damage and mutagenicity with hydrogen peroxide. Biochem. Mol. Biol. Int. 45: 635-642.

Kim SG, Kim ST, Kang SY, Wang Y, Kim W, Kang KY 2008 Proteomic analysis of reactive oxygen species (ROS)-related proteins in rice roots. Plant Cell Rep. 27: 363-375.

Kim SY, Sivaguru M, Stacey G 2006 Extracellular ATP in plants. Visualization, localization and analysis of physiological significance in growth and signaling. Plant Physiol. 142: 984-992.

Kisker C, Schindelin H, Rees DC 1997 Molybdenum-cofactor-containing enzymes: structure and mechanism. Annu. Rev. Biochem. 66: 233-267.

Klarzynski O, Plesse B, Joubert JM, Yvin JC, Kopp M, Kloareg B, Fritig B 2000 Linear beta-1,3 glucans are elicitors of defense responses in tobacco. Plant Physiol. 124: 1027-1038.

Kliebenstein DJ, Monde RA, Last RL 1998 Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. Plant Physiol. 118: 637-650.

Klusener B, Young JJ, Murata Y, Allen GJ, Mori IC, Hugouvieux V, Schroeder JI 2002 Convergence of calcium signaling pathways of pathogenic elicitors and abscisic acid in Arabidopsis guard cells. Plant Physiol. 130: 2152-2163.

Knapp MJ, Klinman JP 2002 Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics. Eur. J. Biochem. 269: 3113-3121.

Knappe J, Sawers G 1990 A radical-chemical route to acetyl-CoA: the anaerobically induced pyruvate formate-lyase system of Escherichia coli. FEMS Microbiol. Rev. 6: 383-398.

Kobayashi M, Kawakita K, Maeshima M, Doke N, Yoshioka H 2006 Subcellular localization of Strboh proteins and NADPH-dependent O2(-)-generating activity in potato tuber tissues. J. Exp. Bot. 57: 1373-1379.

Kobayashi M, Ohura I, Kawakita K, Yokota N, Fujiwara M, Shimamoto K, Doke N, Yoshioka H 2007 Calcium-dependent protein kinases regulate the production of reactive oxygen species by potato NADPH oxidase. Plant Cell 19: 1065-1080.

Kobayashi N, Dellapenna D 2008 Tocopherol metabolism, oxidation and recycling under high light stress in Arabidopsis. Plant J. Apr 30 [Epub ahead of print].

Kobayashi Y, Furuta Y, Ohno T, Hara T, Koyama H 2005 Quantitative trait loci controlling aluminium tolerance in two accessions of Arabidopsis thaliana (Landsberg erecta and Cape Verde Islands). Plant Cell Environ. 28: 1516-1524.

Kochhar S, Kochhar VK 2005 Expression of antioxidant enzymes and heat shock proteins in relation to combined stress of cadmium and heat in Vigna mungo seedlings. Plant Sci. 168: 921-929.

Kogan AKh, Grachev SV, Eliseeva SV, Bolevich S 1997 Carbon dioxide--a universal inhibitor of the generation of active oxygen forms by cells. Izv. Akad. Nauk. Ser. Biol. 1997: 204-217.

Kondo K, Kurihara M, Miyata N, Suzuki T, Toyoda M 1999 Mechanistic studies of catechins as antioxidants against radical oxidation. Arch. Biochem. Biophys. 362: 79-86.

Konishi K, Ohta T, Oinuma K, Hashimoto Y, Kitagawa T, Kobayashi M 2006 Discovery of a reaction intermediate of aliphatic aldoxime dehydratase involving heme as an active center. Proc. Natl. Acad. Sci. U.S.A. 103: 564-568.

Kotak S, Larkindale J, Lee U, von Koskull-Döring P, Vierling E, Scharf KD 2007 Complexity of the heat stress response in plants. Curr. Opin. Plant Biol. 10: 310-316.

Kovalchuk I, Filkowski J, Smith K, Kovalchuk O 2003 Reactive oxygen species stimulate homologous recombination in plants. Plant Cell Environ. 26: 1531-1539.

Kowaltowski AJ, Costa AD, Vercesi AE 1998 Activation of the potato plant uncoupling mitochondrial protein inhibits reactive oxygen species generation by the respiratory chain. FEBS Lett. 425: 213-216.

Kozlowska-Szerenos B, Bialuk I, Maleszewski S 2004 Enhancement of photosynthetic O2 evolution in Chlorella vulgaris under high light and increased CO2 concentration as a sign of acclimation to phosphate deficiency. Plant Physiol. Biochem. 42: 403-409.

Krantz M, Nordlander B, Valadi H, Johansson M, Gustafsson L, Hohmann S 2004 Anaerobicity prepares Saccharomyces cerevisiae cells for faster adaptation to osmotic shock. Eukaryot. Cell 3: 1381-1390.

Krause M, Durner J 2004 Harpin inactivates mitochondria in Arabidopsis suspension cells. Mol. Plant-Microbe Interact. 17: 131-139.

Kreuzer-Martin HW, Ehleringer JR, Hegg EL 2005 Oxygen isotopes indicate most intracellular water in log-phase Escherichia coli is derived from metabolism. Proc. Natl. Acad. Sci. U. S. A. 102: 17337-17341.

Krieger-Liszkay A 2005 Singlet oxygen production in photosynthesis. J. Exp. Bot. 56: 337-346.

Krishnan N, Dickman MB, Becker DF 2008 Proline modulates the intracellular redox environment and protects mammalian cells against oxidative stress. Free Radic. Biol. Med. 44: 671-681.

Kupper FC, Gaquerel E, Boneberg EM, Morath S, Salaun JP, Potin P 2006 Early events in the perception of lipopolysaccharides in the brown alga Laminaria digitata include an oxidative burst and activation of fatty acid oxidation cascades. J. Exp. Bot. 57: 1991-1999.

Kupper FC, Kloareg B, Guern J, Potin P 2001 Oligoguluronates elicit an oxidative burst in the brown algal kelp Laminaria digitata. Plant Physiol. 125: 278-291.

Kusnierczyk A, Winge P, Jørstad TS, Troczynska J, Rossiter JT, Bones AM 2008 Towards global understanding of plant defence against aphids - timing and dynamics of early Arabidopsis defence responses to cabbage aphid (Brevicoryne brassicae) attack. Plant Cell Environ. 31: 1097-1115.

Kuzniak E, Sklodowska M 2005 Fungal pathogen-induced changes in the antioxidant systems of leaf peroxisomes from infected tomato plants. Planta 222: 192-200.

Kwak JM, Nguyen V, Schroeder JI 2006 The role of reactive oxygen species in hormonal responses. Plant Physiol. 141: 323-329.

Kwon SJ, Kwon SI, Bae MS, Cho EJ, Park OK 2007 Role of the methionine sulfoxide reductase MsrB3 in cold acclimation in Arabidopsis. Plant Cell Physiol. 48: 1713-1723.

Kwon SY, Jeong YJ, Lee HS, Kim JS, Cho KY, Allen RD, Kwak SS 2002 Enhanced tolerances of transgenic tobacco plants expressing both superoxide dismutase and ascorbate peroxidase in chloroplasts against methyl viologen-mediated oxidative stress. Plant Cell Environ. 25: 873-882.

Laisk A, Eichelmann H, Oja V, Rasulov B, Padu E, Bichele I, Pettai H, Kull O 2005 Adjustment of leaf photosynthesis to shade in a natural canopy: rate parameters. Plant Cell Environ. 28: 375-388.

Laisk A, Sumberg A 1994 Partitioning of the leaf CO2 exchange into components using CO2 exchange and fluorescence measurements. Plant Physiol. 106: 689-695.

Lake JA, Woodward FI, Quick WP 2002 Long-distance CO2 signalling in plants. J. Exp. Bot. 53: 183-193.

Laloi C, Apel K, Danon A 2004 Reactive oxygen signalling: the latest news. Curr. Opin. Plant Biol. 7: 323-328.

Laloraya MM, Chandra-kuntal K, Kumar GP, Laloraya M 1999 Active oxygen species in blue light mediated signal transduction in coleoptile tips. Biochem. Biophys. Res. Commun. 256: 293-298.

Lam E, del Pozo O 2000 Caspase-like protease involvement in the control of plant cell death. Plant Mol. Biol. 44: 417-428.

Lam E, Pontier D, del Pozo O 1999 Die and let live - programmed cell death in plants. Curr. Opin. Plant Biol. 2: 502-507.

Lamb HK, van den Hombergh JP, Newton GH, Moore JD, Roberts CF, Hawkins AR 1992 Differential flux through the quinate and shikimate pathways. Implications for the channelling hypothesis. Biochem. J. 284: 181-187.

Landini S, Graham MY, Graham TL 2003 Lactofen induces isoflavone accumulation and glyceollin elicitation competency in soybean. Phytochemistry 62: 865-874.

Lanfranco L, Novero M, Bonfante P 2005 The mycorrhizal fungus Gigaspora margarita possesses a CuZn superoxide dismutase that is up-regulated during symbiosis with legume hosts. Plant Physiol. 137: 1319-1330.

Lantin S, O'Brien M, Matton DP 1999 Pollination, wounding and jasmonate treatments induce the expression of a developmentally regulated pistil dioxygenase at a distance, in the ovary, in the wild potato Solanum chacoense Bitt. Plant Mol. Biol. 41: 371-386.

Larkindale J, Hall JD, Knight MR, Vierling E 2005 Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance. Plant Physiol. 138: 882-897.

Lascano HR, Antonicelli GE, Luna CM, Melchiorre MN, Gomez LD, Racca RW, Trippi VS, Casano LM 2001 Antioxidant system response of different wheat cultivars under drought: field and in vitro studies. Aust. J. Plant Physiol. 28: 1095-1102.

Laus MN, Soccio M, Trono D, Cattivelli L, Pastore D 2008 Plant inner membrane anion channel (PIMAC) function in plant mitochondria. Plant Cell Physiol. 49: 1039-1055.

Ledford HK, Niyogi KK 2005 Singlet oxygen and photo-oxidative stress management in plants and algae. Plant Cell Environ. 28: 1037-1045.

Lee BH, Lee H, Xiong L, Zhu JK 2002 A mitochondrial complex I defect impairs cold-regulated nuclear gene expression. Plant Cell 14: 1235-1251.

Lee CB, Hayashi H, Moon BY 1997 Stabilization by glycinebetaine of photosynthetic oxygen evolution by thylakoid membranes from Synechococcus PCC7002. Mol. Cells 7: 296-299.

Lee J, Shim D, Song WY, Hwang I, Lee Y 2004 Arabidopsis metallothioneins 2a and 3 enhance resistance to cadmium when expressed in Vicia faba guard cells. Plant Mol. Biol. 54: 805-815.

Lee K, Berthiaume F, Stephanopoulos GN, Yarmush ML 2003 Induction of a hypermetabolic state in cultured hepatocytes by glucagon and H2O2. Metab. Eng. 5: 221-229.

Lee MY, Shin KH, Kim YK, Suh JY, Gu YY, Kim MR, Hur YS, Son O, Kim JS, Song E, Lee MS, Nam KH, Hwang KH, Sung MK, Kim HJ, Chun JY, Park M, Ahn TI, Hong CB, Lee SH, Park HJ, Park JS, Verma DP, Cheon CI 2005 Induction of thioredoxin is required for nodule development to reduce reactive oxygen species levels in soybean roots. Plant Physiol. 139: 1881-1889.

Lee S, Choi H, Suh S, Doo IS, Oh KY, Jeong Choi E, Schroeder Taylor AT, Low PS, Lee Y 1999 Oligogalacturonic acid and chitosan reduce stomatal aperture by inducing the evolution of reactive oxygen species from guard cells of tomato and Commelina communis. Plant Physiol. 121: 147-152.

Lee SB, Bae IH, Bae YS, Um HD 2006 Link between mitochondria and NADPH oxidase 1 isozyme for the sustained production of reactive oxygen species and cell death. J. Biol. Chem. 281: 36228-36235.

Lee YS, Park SC, Goldberg AL, Chung CH 1988 Protease So from Escherichia coli preferentially degrades oxidatively damaged glutamine synthetase. J. Biol. Chem. 263: 6643-6646.

Lee YY, Shearer N, Spiro S 2006 Transcription factor NNR from Paracoccus denitrificans is a sensor of both nitric oxide and oxygen: isolation of nnr* alleles encoding effector-independent proteins and evidence for a haem-based sensing mechanism. Microbiology 152: 1461-14670.

Leegood RC 2008 Roles of the bundle sheath cells in leaves of C3 plants. J. Exp. Bot. 59: 1663-1673.

Leitner M, Kaiser R, Rasmussen MO, Driguez H, Boland W, Mithofer A 2008 Microbial oligosaccharides differentially induce volatiles and signalling components in Medicago truncatula. Phytochemistry 69: 2029-2040.

Leonard S, Gannett PM, Rojanasakul Y, Schwegler-Berry D, Castranova V, Vallyathan V, Shi X 1998 Cobalt-mediated generation of reactive oxygen species and its possible mechanism. J. Inorg. Biochem. 70: 239-244.

Leopoldini M, Russo N, Toscano M, Dulak M, Wesolowski TA 2006 Mechanism of nitrate reduction by Desulfovibrio desulfuricans nitrate reductase. A theoretical investigation. Chemistry 12: 2532-2541.

Leshem Y, Melamed-Book N, Cagnac O, Ronen G, Nishri Y, Solomon M, Cohen G, Levine A 2006 Suppression of Arabidopsis vesicle-SNARE expression inhibited fusion of H2O2-containing vesicles with tonoplast and increased salt tolerance. Proc. Natl. Acad. Sci. U.S.A. 103: 18008-18013.

Leshem Y, Seri L, Levine A 2007 Induction of phosphatidylinositol 3-kinase-mediated endocytosis by salt stress leads to intracellular production of reactive oxygen species and salt tolerance. Plant J. 51: 185-197.

Leu E, Krieger-Liszkay A, Goussias C, Gross EM 2002 Polyphenolic allelochemicals from the aquatic angiosperm Myriophyllum spicatum inhibit photosystem II. Plant Physiol. 130: 2011-2018.

Levine RL 1983 Oxidative modification of glutamine synthetase. I. Inactivation is due to loss of one histidine residue. J. Biol. Chem. 258: 11823-11827.

Levine RL 2002 Carbonyl modified proteins in cellular regulation, aging, and disease. Free Radic. Biol. Med. 32: 790-796.

Li CZ, Jiao J, Wang GX 2004 The important roles of reactive oxygen species in the relationship between ethylene and polyamines in leaves of spring wheat seedlings under root osmotic stress. Plant Sci. 166: 303-315.

Li F, Wu X, Tsang E, Cutler AJ 2005 Transcriptional profiling of imbibed Brassica napus seed. Genomics 86: 718-730.

Li Y, Huang J, Sandmann G, Chen F 2008 Glucose sensing and the mitochondrial alternative pathway are involved in the regulation of astaxanthin biosynthesis in the dark-grown Chlorella zofingiensis (Chlorophyceae). Planta Jul 3 [Epub ahead of print].

Lin YP, Hsu FL, Chen CS, Chern JW, Lee MH 2007 Constituents from the Formosan apple reduce tyrosinase activity in human epidermal melanocytes. Phytochemistry 68: 1189-1199.

Lindahl M, Spetea C, Hundal T, Oppenheim AB, Adam Z, Andersson B 2000 The thylakoid FtsH protease plays a role in the light-induced turnover of the photosystem II D1 protein. Plant Cell 12: 419-432.

Lindqvist Y, Branden CI 1989 The active site of spinach glycolate oxidase. J. Biol. Chem. 264: 3624-3628.

Liszkay A, van der Zalm E, Schopfer P 2004 Production of reactive oxygen intermediates (O2., H2O2, and .OH) by maize roots and their role in wall loosening and elongation growth. Plant Physiol. 136: 3114-3123.

Liu F, Schnable PS 2002 Functional specialization of maize mitochondrial aldehyde dehydrogenases. Plant Physiol. 130: 1657-1674.

Liu HH, Liu J, Fan SL, Song MZ, Han XL, Liu F, Shen FF 2008 Molecular cloning and characterization of a salinity stress-induced gene encoding DEAD-box helicase from the halophyte Apocynum venetum. J. Exp. Bot. 59: 633-644.

Liu Y, Ren D, Pike S, Pallardy S, Gassmann W, Zhang S 2007 Chloroplast-generated reactive oxygen species are involved in hypersensitive response-like cell death mediated by a mitogen-activated protein kinase cascade. Plant J. 51: 941-954.

Lochman J, Mikes V 2006 Ergosterol treatment leads to the expression of a specific set of defence-related genes in tobacco. Plant Mol. Biol. 62: 43-51.

Lochner K, Doring O, Bottger M 2003 Phylloquinone, what can we learn from plants? Biofactors 18: 73-78.

Logan DC 2006 The mitochondrial compartment. J. Exp. Bot. 57: 1225-1243.

Logan DC 2007 The mitochondrial compartment. J. Exp. Bot. 58: 1225-1243.

Lohar DP, Sharopova N, Endre G, Penuela S, Samac D, Town C, Silverstein KA, Vandenbosch KA 2006 Transcript analysis of early nodulation events in Medicago truncatula. Plant Physiol. 140: 221-234.

Lopes-Lutz D, Alviano DS, Alviano CS, Kolodziejczyk PP 2008 Screening of chemical composition, antimicrobial and antioxidant activities of Artemisia essential oils. Phytochemistry 69: 1732-1738.

Loreto F, Velikova V 2001 Isoprene produced by leaves protects the photosynthetic apparatus against ozone damage, quenches ozone products, and reduces lipid peroxidation of cellular membranes. Plant Physiol. 127: 1781-1787.

Loros JJ, Dunlap JC, Larrondo LF, Shi M, Belden WJ, Gooch VD, Chen CH, Baker CL, Mehra A, Colot HV, Schwerdtfeger C, Lambreghts R, Collopy PD, Gamsby JJ, Hong CI 2007 Circadian output, input, and intracellular oscillators: insights into the circadian systems of single cells. Cold Spring Harb. Symp. Quant. Biol. 72: 201-214.

Love AJ, Yun BW, Laval V, Loake GJ, Milner JJ 2005 Cauliflower mosaic virus, a compatible pathogen of Arabidopsis, engages three distinct defense-signaling pathways and activates rapid systemic generation of reactive oxygen species. Plant Physiol. 139: 935-948.

Ludwig AA, Saitoh H, Felix G, Freymark G, Miersch O, Wasternack C, Boller T, Jones JD, Romeis T 2005 Ethylene-mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants. Proc. Natl. Acad. Sci. U.S.A. 102: 10736-10741.

Ludwig M, von Caemmerer S, Dean Price G, Badger MR, Furbank RT 1998 Expression of tobacco carbonic anhydrase in the C4 dicot flaveria bidentis leads to increased leakiness of the bundle sheath and a defective CO2-concentrating mechanism. Plant Physiol. 117: 1071-1081.

Lukacin R, Groning I, Schiltz E, Britsch L, Matern U 2000 Purification of recombinant flavanone 3beta-hydroxylase from petunia hybrida and assignment of the primary site of proteolytic degradation. Arch. Biochem. Biophys. 375: 364-370.

Lukat P, Rudolf M, Stach P, Messerschmidt A, Kroneck PM, Simon J, Einsle O 2008 Binding and reduction of sulfite by cytochrome c nitrite reductase. Biochemistry 47: 2080-2086.

Luna CM, Casano LM, Trippi VS 2000 Inhibition of wheat nitrate reductase activity by zinc. Biol. Plant. 43: 257-262.

Lunde C, Baumann U, Shirley NJ, Drew DP, Fincher GB 2006 Gene structure and expression pattern analysis of three monodehydroascorbate reductase (Mdhar) genes in Physcomitrella patens: implications for the evolution of the MDHAR family in plants. Plant Mol. Biol. 60: 259-275.

Luu DT, Maurel C 2005 Aquaporins in a challenging environment: molecular gears for adjusting plant water status. Plant Cell Environ. 28: 85-96.

Maass A, Scholz J, Moser A 2003 Modeled ligand-protein complexes elucidate the origin of substrate specificity and provide insight into catalytic mechanisms of phenylalanine hydroxylase and tyrosine hydroxylase. Eur. J. Biochem. 270: 1065-1075.

Mackerness SAH, Surplus SL, Blake P, John CF, Buchanan-Wollaston V, Jordan BR, Thomas B 1999 Ultraviolet-B-induced stress and changes in gene expression in Arabidopsis thaliana: role of signalling pathways controlled by jasmonic acid, ethylene and reactive oxygen species. Plant Cell Environ. 22: 1413-1423.

MacPherson IS, Murphy ME 2007 Type-2 copper-containing enzymes. Cell. Mol. Life Sci. 64: 2887-2899.

Maechler P, Carobbio S, Rubi B 2006 In beta-cells, mitochondria integrate and generate metabolic signals controlling insulin secretion. Int. J. Biochem. Cell. Biol. 38: 696-709.

Maeda H, Sakuragi Y, Bryant DA, Dellapenna D 2005 Tocopherols protect Synechocystis sp. strain PCC 6803 from lipid peroxidation. Plant Physiol. 138: 1422-1435.

Magneschi L, Perata P 2008 Rice germination and seedling growth in the absence of oxygen. Ann. Bot. (Lond.) Jul 25 [Epub ahead of print].

Mahler H, Wuennenberg P, Linder M, Przybyla D, Zoerb C, Landgraf F, Forreiter C 2007 Singlet oxygen affects the activity of the thylakoid ATP synthase and has a strong impact on its gamma subunit. Planta 225: 1073-1083.

Maksimenko AV, Golubykh VL, Tischenko EG 2003 Catalase and chondroitin sulfate derivatives against thrombotic effect induced by reactive oxygen species in a rat artery. Metab. Eng. 5: 177-182.

Malakar D, Dey A, Basu A, Ghosh AK 2008 Antiapoptotic role of S-adenosyl-L-methionine against hydrochloric acid induced cell death in Saccharomyces cerevisiae. Biochim. Biophys. Acta 1780: 937-947.

Mancuso S, Marras AM 2003 Different pathways of the oxygen supply in the sapwood of young Olea europaea trees. Planta 216: 1028-1033.

Manners JM, Penninckx IA, Vermaere K, Kazan K, Brown RL, Morgan A, Maclean DJ, Curtis MD, Cammue BP, Broekaert WF 1998 The promoter of the plant defensin gene PDF1.2 from Arabidopsis is systemically activated by fungal pathogens and responds to methyl jasmonate but not to salicylic acid. Plant Mol. Biol. 38: 1071-1080.

Marino D, Gonzalez EM, Arrese-Igor C 2006 Drought effects on carbon and nitrogen metabolism of pea nodules can be mimicked by paraquat: evidence for the occurrence of two regulation pathways under oxidative stresses. J. Exp. Bot. 57: 665-673.

Marino D, Gonzalez EM, Frendo P, Puppo A, Arrese-Igor C 2007 NADPH recycling systems in oxidative stressed pea nodules: a key role for the NADP(+)-dependent isocitrate dehydrogenase. Planta 225: 413-421.

Marre MT, Amicucci E, Zingarelli L, Albergoni F, Marre E 1998 The respiratory burst and electrolyte leakage induced by sulfhydryl blockers in Egeria densa leaves are associated with H2O2 production and are dependent on Ca2+ influx. Plant Physiol. 118: 1379-1387.

Marsch-Martinez N, Greco R, Van Arkel G, Herrera-Estrella L, Pereira A 2002 Activation tagging using the en-I maize transposon system in Arabidopsis. Plant Physiol. 129: 1544-1556.

Martin G, Haehnel W, Boger P 1997 Oxidative inactivation of glutamine synthetase from the cyanobacterium Anabaena variabilis. J. Bacteriol. 179: 730-734.

Martinez C, Baccou JC, Bresson E, Baissac Y, Daniel JF, Jalloul A, Montillet JL, Geiger JP, Assigbetse K, Nicole M 2000 Salicylic acid mediated by the oxidative burst is a key molecule in local and systemic responses of cotton challenged by an avirulent race of Xanthomonas campestris pv. malvacearum. Plant Physiol. 122: 757-766.

Maruyama-Nakashita A, Inoue E, Watanabe-Takahashi A, Yamaya T, Takahashi H 2003 Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways. Plant Physiol. 132: 597-605.

Marx C, Wong JH, Buchanan BB 2003 Thioredoxin and germinating barley: targets and protein redox changes. Planta 216: 454-460.

Masuda D, Ishida M, Yamaguchi K, Yamaguchi I, Kimura M, Nishiuchi T 2007 Phytotoxic effects of trichothecenes on the growth and morphology of Arabidopsis thaliana. J. Exp. Bot. 58: 1617-1626.

Matityahu I, Kachan L, Bar Ilan I, Amir R 2006 Transgenic tobacco plants overexpressing the Met25 gene of Saccharomyces cerevisiae exhibit enhanced levels of cysteine and glutathione and increased tolerance to oxidative stress. Amino Acids 30: 185-194.

Matsunaga I, Sumimoto T, Ayata M, Ogura H 2002 Functional modulation of a peroxygenase cytochrome P450: novel insight into the mechanisms of peroxygenase and peroxidase enzymes. FEBS Lett. 528: 90-94.

Matthews PD, Luo R, Wurtzel ET 2003 Maize phytoene desaturase and {zeta}-carotene desaturase catalyse a poly-Z desaturation pathway: implications for genetic engineering of carotenoid content among cereal crops. J. Exp. Bot. 54: 2215-2230.

Maxwell DP, Wang Y, McIntosh L 1999 The alternative oxidase lowers mitochondrial reactive oxygen production in plant cells. Proc. Natl. Acad. Sci. U.S.A. 96: 8271-8276.

Mazel A, Leshem Y, Tiwari BS, Levine A 2004 Induction of salt and osmotic stress tolerance by overexpression of an intracellular vesicle trafficking protein AtRab7 (AtRabG3e). Plant Physiol. 134: 118-128.

McDonald AE, Amirsadeghi S, Vanlerberghe GC 2003 Prokaryotic orthologues of mitochondrial alternative oxidase and plastid terminal oxidase. Plant Mol. Biol. 53: 865-876.

McDonald AE, Amirsadeghi S, Vanlerberghe GC 2003 Prokaryotic orthologues of mitochondrial alternative oxidase and plastid terminal oxidase. Plant Mol.Biol. 53: 865-876.

McGinn PJ, Price GD, Badger MR 2004 High light enhances the expression of low-CO2-inducible transcripts involved in the CO2-concentrating mechanism in Synechocystis sp PCC6803. Plant Cell Environ. 27: 615-626.

Mendel RR, Bittner F 2006 Cell biology of molybdenum. Biochim. Biophys. Acta 1763: 621-635.

Mengiste T, Chen X, Salmeron J, Dietrich R 2003 The BOTRYTIS SUSCEPTIBLE1 gene encodes an R2R3MYB transcription factor protein that is required for biotic and abiotic stress responses in Arabidopsis. Plant Cell 15: 2551-2565.

Menone ML, Pesce SF, Díaz MP, Moreno VJ, Wunderlin DA 2008 Endosulfan induces oxidative stress and changes on detoxication enzymes in the aquatic macrophyte Myriophyllum quitense. Phytochemistry 69: 1150-1157.

Mercke P, Kappers IF, Verstappen FW, Vorst O, Dicke M, Bouwmeester HJ 2004 Combined transcript and metabolite analysis reveals genes involved in spider mite induced volatile formation in cucumber plants. Plant Physiol. 135: 2012-2024.

Merquiol E, Pneuli L, Cohen M, Simovitch M, Rachmilevitch S, Goloubinoff P, Kaplan A, Mittler R 2002 Seasonal and diurnal variations in gene expression in the desert legume Retama raetam. Plant Cell Environ. 25: 1627-1638.

Meyer C, Lea US, Provan F, Kaiser WM, Lillo C 2005 Is nitrate reductase a major player in the plant NO (nitric oxide) game? Photosynth. Res. 83: 181-189.

Michel KP, Pistorius EK 2004 Adaptation of the photosynthetic electron transport chain in cyanobacteria to iron deficiency: The function of IdiA and IsiA. Physiol. Plant. 120: 36-50.

Miles GP, Samuel MA, Ellis BE 2002 Suramin inhibits oxidant signalling in tobacco suspension-cultured cells. Plant Cell Environ. 25: 521-527.

Miller G, Shulaev V, Mittler R 2008 Reactive oxygen signaling and abiotic stress. Physiol. Plant. 133: 481-489.

Miller G, Suzuki N, Rizhsky L, Hegie A, Koussevitzky S, Mittler R 2007 Double mutants deficient in cytosolic and thylakoid ascorbate peroxidase reveal a complex mode of interaction between reactive oxygen species, plant development, and response to abiotic stresses. Plant Physiol. 144: 1777-1785.

Milton SL, Prentice HM 2007 Beyond anoxia: the physiology of metabolic downregulation and recovery in the anoxia-tolerant turtle. Comp. Biochem. Physiol. A. Mol. Integr. Physiol. 147: 277-290.

Mino M, Maekawa K, Ogawa K, Yamagishi H, Inoue M 2002 Cell death processes during expression of hybrid lethality in interspecific F(1) hybrid between Nicotiana gossei Domin and Nicotiana tabacum. Plant Physiol. 130: 1776-1787.

Mir G, Domenech J, Huguet G, Guo WJ, Goldsbrough P, Atrian S, Molinas M 2004 A plant type 2 metallothionein (MT) from cork tissue responds to oxidative stress. J. Exp. Bot. 55: 2483-2493.

Mirica LM, Klinman JP 2008 The nature of O2 activation by the ethylene-forming enzyme 1-aminocyclopropane-1-carboxylic acid oxidase. Proc. Natl. Acad. Sci. U.S.A. 105: 1814-1819.

Mishina TE, Zeier J 2007 Pathogen-associated molecular pattern recognition rather than development of tissue necrosis contributes to bacterial induction of systemic acquired resistance in Arabidopsis. Plant J. 50: 500-513.

Mishra NP, Mishra RK, Singhal GS 1993 Changes in the activities of anti-oxidant enzymes during exposure of intact wheat leaves to strong visible light at different temperatures in the presence of protein synthesis inhibitors. Plant Physiol. 102: 903-910.

Miskell JA, Parmenter G, Eaton-Rye JJ 2002 Decreased Hill reaction rates and slow turnover of transitory starch in the obligate shade plant Panax quinquefolius L. (American ginseng). Planta 215: 969-979.

Misra HS, Khairnar NP, Barik A, Indira Priyadarsini K, Mohan H, Apte SK 2004 Pyrroloquinoline-quinone: a reactive oxygen species scavenger in bacteria. FEBS Lett. 578: 26-30.

Mita G, Fasano P, De Domenico S, Perrone G, Epifani F, Iannacone R, Casey R, Santino A 2007 9-Lipoxygenase metabolism is involved in the almond/Aspergillus carbonarius interaction. J. Exp. Bot. 58: 1803-1811.

Mitchum MG, Yamaguchi S, Hanada A, Kuwahara A, Yoshioka Y, Kato T, Tabata S, Kamiya Y, Sun TP 2006 Distinct and overlapping roles of two gibberellin 3-oxidases in Arabidopsis development. Plant J. 45: 804-818.

Mithofer A, Schulze B, Boland W 2004 Biotic and heavy metal stress response in plants: evidence for common signals. FEBS Lett. 566: 1-5.

Mittler R, Feng X, Cohen M 1998 Post-transcriptional suppression of cytosolic ascorbate peroxidase expression during pathogen-induced programmed cell death in tobacco. Plant Cell 10: 461-473.

Mittler R, Vanderauwera S, Gollery M, Van Breusegem F 2004 Reactive oxygen gene network of plants. Trends Plant Sci. 9: 490-498.

Mittova V, Tal M, Volokita M, Guy M 2003 Up-regulation of the leaf mitochondrial and peroxisomal antioxidative systems in response to salt-induced oxidative stress in the wild salt-tolerant tomato species Lycopersicon pennellii. Plant Cell Environ. 26: 845-856.

Mittova V, Theodoulou FL, Kiddle G, Volokita M, Tal M, Foyer CH, Guy M 2004 Comparison of mitochondrial ascorbate peroxidase in the cultivated tomato, Lycopersicon esculentum, and its wild, salt-tolerant relative, L-pennellii - a role for matrix isoforms in protection against oxidative damage. Plant Cell Environ. 27: 237-250.

Mizuno M, Kamei M, Tsuchida H 1998 Ascorbate peroxidase and catalase cooperate for protection against hydrogen peroxide generated in potato tubers during low-temperature storage. Biochem. Mol. Biol. Int. 44: 717-726.

Mlejnek P, Dolezel P, Prochazka S 2003 Intracellular phosphorylation of benzyladenosine is related to apoptosis induction in tobacco BY-2 cells. Plant Cell Environ. 26: 1723-1735.

Molina-Heredia FP, Houee-Levin C, Berthomieu C, Touati D, Tremey E, Favaudon V, Adam V, Niviere V 2006 Detoxification of superoxide without production of H2O2: antioxidant activity of superoxide reductase complexed with ferrocyanide. Proc. Natl. Acad. Sci. U.S.A. 103: 14750-14755.

Moller IM 2001 Plant mitochondra and oxidative stress: electron transport, NADPH turnover, and metabolism of reactive oxygen species. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 561-591.

Moller IM, Jensen PE, Hansson A 2007 Oxidative modifications to cellular components in plants. Annu. Rev. Plant Biol. 58: 459-481.

Moller IM, Kristensen BK 2004 Protein oxidation in plant mitochondria as a stress indicator. Photochem. Photobiol. Sci. 3: 730-735.

Montillet JL, Cacas JL, Garnier L, Montane MH, Douki T, Bessoule JJ, Polkowska-Kowalczyk L, Maciejewska U, Agnel JP, Vial A, Triantaphylides C 2004 The upstream oxylipin profile of Arabidopsis thaliana: a tool to scan for oxidative stresses. Plant J. 40: 439-451.

Montillet JL, Chamnongpol S, Rusterucci C, Dat J, van de Cotte B, Agnel JP, Battesti C, Inze D, Van Breusegem F, Triantaphylides C 2005 Fatty acid hydroperoxides and H2O2 in the execution of hypersensitive cell death in tobacco leaves. Plant Physiol. 138: 1516-1526.

Moons A 2003 Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots. FEBS Lett. 553: 427-432.

Moradi F, Ismail AM 2007 Responses of photosynthesis, chlorophyll fluorescence and ROS-scavenging systems to salt stress during seedling and reproductive stages in rice. Ann. Bot. (Lond.) 99: 1161-1173.

Morard P, Lacoste L, Silvestre J 2004 Effect of oxygen deficiency on mineral nutrition of excised tomato roots. J. Plant Nutr. 27: 613-626.

Moreau VH, Castilho RF, Ferreira ST, Carvalho-Alves PC 1998 Oxidative damage to sarcoplasmic reticulum Ca2+-ATPase at submicromolar iron concentrations: evidence for metal-catalyzed oxidation. Free Radic. Biol. Med. 25: 554-560.

Morel J, Fromentin J, Blein JP, Simon-Plas F, Elmayan T 2004 Rac regulation of NtrbohD, the oxidase responsible for the oxidative burst in elicited tobacco cell. Plant J. 37: 282-293.

Morell MK, Paul K, O'Shea NJ, Kane HJ, Andrews TJ 1994 Mutations of an active site threonyl residue promote beta elimination and other side reactions of the enediol intermediate of the ribulose-bisphosphate carboxylase reaction. J. Biol. Chem. 269: 8091-8098.

Morell MK, Wilkin JM, Kane HJ, Andrews TJ 1997 Side reactions catalyzed by ribulose-bisphosphate carboxylase in the presence and absence of small subunits. J. Biol. Chem. 272: 5445-5451.

Moreno JI, Martin R, Castresana C 2005 Arabidopsis SHMT1, a serine hydroxymethyltransferase that functions in the photorespiratory pathway influences resistance to biotic and abiotic stress. Plant J. 41: 451-463.

Morgan JA, Rhodes D 2002 Mathematical modeling of plant metabolic pathways. Metab. Eng. 4: 80-89.

Morgan PE, Dean RT, Davies MJ 2002 Inhibition of glyceraldehyde-3-phosphate dehydrogenase by peptide and protein peroxides generated by singlet oxygen attack. Eur. J. Biochem. 269: 1916-1925.

Mori IC, Pinontoan R, Kawano T, Muto S 2001 Involvement of superoxide generation in salicylic acid-induced stomatal closure in Vicia faba. Plant Cell Physiol. 42: 1383-1388.

Mori IC, Schroeder JI 2004 Reactive oxygen species activation of plant Ca2+ channels. A signaling mechanism in polar growth, hormone transduction, stress signaling, and hypothetically mechanotransduction. Plant Physiol. 135: 702-708.

Morikawa H, Takahashi M, Sakamoto A, Matsubara T, Arimura G, Kawamura Y, Fukunaga K, Fujita K, Sakurai N, Hirata T, Ide H, Nonoyama N, Suzuki H 2004 Formation of unidentified nitrogen in plants: an implication for a novel nitrogen metabolism. Planta 219: 14-22.

Mortimer JC, Laohavisit A, Macpherson N, Webb A, Brownlee C, Battey NH, Davies JM 2008 Annexins: multifunctional components of growth and adaptation. J. Exp. Bot. 59: 533-544.

Moura JJ, Brondino CD, Trincao J, Romao MJ 2004 Mo and W bis-MGD enzymes: nitrate reductases and formate dehydrogenases. J. Biol. Inorg. Chem. 9: 791-799.

Mueller LA, Hinz U, Uze M, Sautter C, Zryd JP 1997 Biochemical complementation of the betalain biosynthetic pathway in Portulaca grandiflora by a fungal 3,4- dihydroxyphenylalanine dioxygenase. Planta 203: 260-263.

Mueller MJ, Mene-Saffrane L, Grun C, Karg K, Farmer EE 2006 Oxylipin analysis methods. Plant J. 45: 472-489.

Mullen RT, Lisenbee CS, Miernyk JA, Trelease RN 1999 Peroxisomal membrane ascorbate peroxidase is sorted to a membranous network that resembles a subdomain of the endoplasmic reticulum. Plant Cell 11: 2167-2186.

Mullineaux P, Karpinski S 2002 Signal transduction in response to excess light: getting out of the chloroplast. Curr. Opin. Plant Biol. 5: 43-48.

Munne-Bosch S 2005 The role of alpha-tocopherol in plant stress tolerance. J. Plant Physiol. 162: 743-748.

Munne-Bosch S, Alegre L 2002 Interplay between ascorbic acid and lipophilic antioxidant defences in chloroplasts of water-stressed Arabidopsis plants. FEBS Lett. 524: 145-148.

Munoz IG, Moran JF, Becana M, Montoya G 2005 The crystal structure of an eukaryotic iron superoxide dismutase suggests intersubunit cooperation during catalysis. Protein Sci. 14: 387-394.

Mur LA, Kenton P, Atzorn R, Miersch O, Wasternack C 2006 The outcomes of concentration-specific interactions between salicylate and jasmonate signaling include synergy, antagonism, and oxidative stress leading to cell death. Plant Physiol. 140: 249-262.

Mur LA, Kenton P, Lloyd AJ, Ougham H, Prats E 2008 The hypersensitive response; the centenary is upon us but how much do we know? J. Exp. Bot. 59: 501-520.

Muraoka H, Tang Y, Terashima I, Koizumi H, Washitani I 2000 Contributions of diffusional limitation, photoinhibition and photorespiration to midday depression of photosynthesis in Arisaema heterophyllum in natural high light. Plant Cell Environ. 23: 235-250.

Murata Y, Pei ZM, Mori IC, Schroeder J 2001 Abscisic acid activation of plasma membrane Ca(2+) channels in guard cells requires cytosolic NAD(P)H and is differentially disrupted upstream and downstream of reactive oxygen species production in abi1-1 and abi2-1 protein phosphatase 2C mutants. Plant Cell 13: 2513-2523.

Murgia I, Tarantino D, Vannini C, Bracale M, Carravieri S, Soave C 2004 Arabidopsis thaliana plants overexpressing thylakoidal ascorbate peroxidase show increased resistance to Paraquat-induced photooxidative stress and to nitric oxide-induced cell death. Plant J. 38: 940-953.

Murphy AM, Chivasa S, Singh DP, Carr JP 1999 Salicylic acid-induced resistance to viruses and other pathogens: a parting of the ways? Trends Plant Sci. 4: 155-160.

Murphy ME, Turley S, Kukimoto M, Nishiyama M, Horinouchi S, Sasaki H, Tanokura M, Adman ET 1995 Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc. Biochemistry 34: 12107-12117.

Murphy TM 2005 What is base excision repair good for? knockout mutants for FPG and OGG glycosylase genes in Arabidopsis. Physiol. Plant. 123: 227-232.

Murphy TM, Vu H, Nguyen T 1998 The superoxide synthases of rose cells. Comparison of assays. Plant Physiol. 117: 1301-1305.

Murugasu-Oei B, Tay A, Dick T 1999 Upregulation of stress response genes and abc transporters in anaerobic stationary-phase Mycobacterium smegmatis. Mol. Gen. Genet. 262: 677-682.

Mustilli AC, Merlot S, Vavasseur A, Fenzi F, Giraudat J 2002 Arabidopsis OST1 protein kinase mediates the regulation of stomatal aperture by abscisic acid and acts upstream of reactive oxygen species production. Plant Cell 14: 3089-3099.

Mylona PV, Polidoros AN, Scandalios JG 2007 Antioxidant gene responses to ROS-generating xenobiotics in developing and germinated scutella of maize. J. Exp. Bot. 58: 1301-1312.

Nagai S, Koide M, Takahashi S, Kikuta A, Aono M, Sasaki-Sekimoto Y, Ohta H, Takamiya K, Masuda T 2007 Induction of isoforms of tetrapyrrole biosynthetic enzymes, AtHEMA2 and AtFC1, under stress conditions and their physiological functions in Arabidopsis. Plant Physiol. 144: 1039-1051.

Nagata T, Todoriki S, Hayashi T, Shibata Y, Mori M, Kanegae H, Kikuchi S 1999 Gamma-radiation induces leaf trichome formation in Arabidopsis. Plant Physiol. 120: 113-120.

Nair RB, Xia Q, Kartha CJ, Kurylo E, Hirji RN, Datla R, Selvaraj G 2002 Arabidopsis CYP98A3 mediating aromatic 3-hydroxylation. Developmental regulation of the gene, and expression in yeast. Plant Physiol. 130: 210-220.

Natarajan V, Scribner WM, Al-Hassani M, Vepa S 1998 Reactive oxygen species signaling through regulation of protein tyrosine phosphorylation in endothelial cells. Environ. Health Perspect. 106: 1205-1212.

Neeli R, Girvan HM, Lawrence A, Warren MJ, Leys D, Scrutton NS, Munro AW 2005 The dimeric form of flavocytochrome P450 BM3 is catalytically functional as a fatty acid hydroxylase. FEBS Lett. 579: 5582-5588.

Neill SO, Gould KS, Kilmartin PA, Mitchell KA, Markham KR 2002 Antioxidant activities of red versus green leaves in Elatostema rugosum. Plant Cell Environ. 25: 539-547.

Nibau C, Wu HM, Cheung AY 2006 RAC/ROP GTPases: 'hubs' for signal integration and diversification in plants. Trends Plant Sci. 11: 309-315.

Nielsen HD, Brown MT, Brownlee C 2003 Cellular responses of developing Fucus serratus embryos exposed to elevated concentrations of Cu2+. Plant Cell Environ. 26: 1737-1747.

Niemi G, Wardrop D, Brooks R, Anderson S, Brady V, Paerl H, Rakocinski C, Brouwer M, Levinson B, McDonald M 2004 Rationale for a new generation of indicators for coastal waters. Environ. Health Perspect. 112: 979-986.

Nishikawa F, Kato M, Hyodo H, Ikoma Y, Sugiura M, Yano M 2003 Ascorbate metabolism in harvested broccoli. J. Exp. Bot. 54: 2439-2448.

Noctor G, Dutilleul C, De Paepe R, Foyer CH 2004 Use of mitochondrial electron transport mutants to evaluate the effects of redox state on photosynthesis, stress tolerance and the integration of carbon/nitrogen metabolism. J. Exp. Bot. 55: 49-57.

Noctor G, Foyer CH 1998 Ascorbate and glutathione: keeping active oxygen under control. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 249-279.

Noctor G, Veljovic-Jovanovic S, Driscoll S, Novitskaya L, Foyer CH 2002 Drought and oxidative load in the leaves of C3 plants: a predominant role for photorespiration? Ann. Bot. (Lond.) 89: 841-850.

Noguchi K, Go CS, Terashima I, Ueda S, Yoshinari T 2001 Activities of the cyanide-resistant respiratory pathway in leaves of sun and shade species. Aust. J. Plant Physiol. 28: 27-35.

Noguchi K, Taylor NL, Millar AH, Lambers H, Day DA 2005 Response of mitochondria to light intensity in the leaves of sun and shade species. Plant Cell Environ. 28: 760-771.

Noji M, Saito M, Nakamura M, Aono M, Saji H, Saito K 2001 Cysteine synthase overexpression in tobacco confers tolerance to sulfur-containing environmental pollutants. Plant Physiol. 126: 973-980.

Nomura M, Takagi H 2004 Role of the yeast acetyltransferase Mpr1 in oxidative stress: regulation of oxygen reactive species caused by a toxic proline catabolism intermediate. Proc. Natl. Acad. Sci. U.S.A. 101: 12616-12621.

Nordlund S, Kanemoto RH, Murrell SA, Ludden PW 1985 Properties and regulation of glutamine synthetase from Rhodospirillum rubrum. J. Bacteriol. 161: 13-17.

Noventa-Jordao MA, Couto RM, Goldman MHS, Aguirre J, Iyer S, Caplan A, Terenzi HF, Goldman GH 1999 Catalase activity is necessary for heat-shock recovery in Aspergillus nidulans germlings. Microbiology 145: 3229-3234.

Nuccio ML, Rhodes D, McNeil SD, Hanson AD 1999 Metabolic engineering of plants for osmotic stress resistance. Curr. Opin. Plant Biol. 2: 128-134.

Nuccio ML, Russell BL, Nolte KD, Rathinasabapathi B, Gage DA, Hanson AD 1998 The endogenous choline supply limits glycine betaine synthesis in transgenic tobacco expressing choline monooxygenase. Plant J. 16: 487-496.

Nuhse TS, Bottrill AR, Jones AM, Peck SC 2007 Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Plant J. 51: 931-940.

Nurnberger T, Wirtz W, Nennstiel D, Hahlbrock K, Jabs T, Zimmermann S, Scheel D 1997 Signal perception and intracellular signal transduction in plant pathogen defense. J. Recept. Signal Transduct. Res. 17: 127-136.

Oberschall A, Deak M, Torok K, Sass L, Vass I, Kovacs I, Feher A, Dudits D, Horvath GV 2000 A novel aldose/aldehyde reductase protects transgenic plants against lipid peroxidation under chemical and drought stresses. Plant J. 24: 437-446.

Oda K, Ogura T, Appelman EH, Yoshikawa S 2004 The intrinsic stability of the second intermediate following the dioxygen-bound form in the O2 reduction by cytochrome c oxidase. FEBS Lett. 570: 161-165.

Oh JE, Hong SW, Lee Y, Koh EJ, Kim K, Seo YW, Chung N, Jeong M, Jang CS, Lee B, Kim KH, Lee H 2005 Modulation of gene expressions and enzyme activities of methionine sulfoxide reductases by cold, ABA or high salt treatments in Arabidopsis. Plant Sci. 169: 1030-1036.

Oh SH, Park YS, Yang MS 1999 Transgenic tobacco plants expressing a mutant VU-4 calmodulin have altered nicotinamide co-enzyme levels and hydrogen peroxide levels. J. Biochem. Mol. Biol. 32: 1-5.

Ohnishi T, Nomura T, Watanabe B, Ohta D, Yokota T, Miyagawa H, Sakata K, Mizutani M 2006 Tomato cytochrome P450 CYP734A7 functions in brassinosteroid catabolism. Phytochemistry 67: 1895-1906.

Okano Y, Mizohata E, Xie Y, Matsumura H, Sugawara H, Inoue T, Yokota A, Kai Y 2002 X-ray structure of Galdieria Rubisco complexed with one sulfate ion per active site. FEBS Lett. 527: 33-36.

Okinaka Y, Yang CH, Perna NT, Keen NT 2002 Microarray profiling of Erwinia chrysanthemi 3937 genes that are regulated during plant infection. Mol. Plant Microbe Interact. 15: 619-629.

Olano C, Lombo F, Mendez C, Salas JA 2008 Improving production of bioactive secondary metabolites in actinomycetes by metabolic engineering. Metab Eng. Jul 15 [Epub ahead of print].

Olsen LF, Hauser MJ, Kummer U 2003 Mechanism of protection of peroxidase activity by oscillatory dynamics. Eur. J. Biochem. 270: 2796-2804.

op den Camp RG, Przybyla D, Ochsenbein C, Laloi C, Kim C, Danon A, Wagner D, Hideg E, Gobel C, Feussner I, Nater M, Apel K 2003 Rapid induction of distinct stress responses after the release of singlet oxygen in Arabidopsis. Plant Cell 15: 2320-2332.

Oracz K, Bouteau Hel-M, Farrant JM, Cooper K, Belghazi M, Job C, Job D, Corbineau F, Bailly C 2007 ROS production and protein oxidation as a novel mechanism for seed dormancy alleviation. Plant J. 50: 452-465.

Orozco-Cardenas ML, Narvaez-Vasquez J, Ryan CA 2001 Hydrogen peroxide acts as a second messenger for the induction of defense genes in tomato plants in response to wounding, systemin, and methyl jasmonate. Plant Cell 13: 179-191.

Orvar BL, McPherson J, Ellis BE 1997 Pre-activating wounding response in tobacco prior to high-level ozone exposure prevents necrotic injury. Plant J. 11: 203-212.

Ottow EA, Brinker M, Teichmann T, Fritz E, Kaiser W, Brosche M, Kangasjarvi J, Jiang X, Polle A 2005 Populus euphratica displays apoplastic sodium accumulation, osmotic adjustment by decreases in calcium and soluble carbohydrates, and develops leaf succulence under salt stress. Plant Physiol. 139: 1762-1772.

Ouziad F, Hildebrandt U, Schmelzer E, Bothe H 2005 Differential gene expressions in arbuscular mycorrhizal-colonized tomato grown under heavy metal stress. J. Plant Physiol. 162: 634-649.

Overmyer K, Brosche M, Kangasjarvi J 2003 Reactive oxygen species and hormonal control of cell death. Trends Plant Sci. 8: 335-342.

Overmyer K, Kollist H, Tuominen H, Betz C, Langebartels C, Wingsle G, Kangasjarvi S, Brader G, Mullineaux P, Kangasjarvi J 2008 Complex phenotypic profiles leading to ozone sensitivity in Arabidopsis thaliana mutants. Plant Cell Environ. Jun 3 [Epub ahead of print].

Overton TW, Griffiths L, Patel MD, Hobman JL, Penn CW, Cole JA, Constantinidou C 2006 Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL and NarP during anaerobic growth of Escherichia coli: new insights into microbial physiology. Biochem. Soc. Trans. 34: 104-107.

Pageau K, Reisdorf-Cren M, Morot-Gaudry JF, Masclaux-Daubresse C 2006 The two senescence-related markers, GS1 (cytosolic glutamine synthetase) and GDH (glutamate dehydrogenase), involved in nitrogen mobilization, are differentially regulated during pathogen attack and by stress hormones and reactive oxygen species … J. Exp. Bot. 57: 547-557.

Pakrasi HB, Diner BA, Williams J, Arntzen CJ 1989 Deletion mutagenesis of the cytochrome b559 protein inactivates the reaction center of photosystem II. Plant Cell 1: 591-597.

Palatnik JF, Valle EM, Federico ML, Gomez LD, Melchiorre MN, Paleo AD, Carrillo N, Acevedo A 2002 Status of antioxidant metabolites and enzymes in a catalase-deficient mutant of barley (Hordeum vulgare L.). Plant Sci. 162: 363-371.

Palmieri MC, Sell S, Huang X, Scherf M, Werner T, Durner J, Lindermayr C 2008 Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: a bioinformatics approach. J. Exp. Bot. 59: 177-186.

Pang CH, Zhang SJ, Gong ZZ, Wang BS 2005 NaCl treatment markedly enhances H2O2-scavenging system in leaves of halophyte Suaeda salsa. Physiol. Plant. 125: 490-499.

Pantopoulos K, Hentze MW 1995 Rapid responses to oxidative stress mediated by iron regulatory protein. EMBO J. 14: 2917-2924.

Papadakis AK, Roubelakis-Angelakis KA 1999 The generation of active oxygen species differs in tobacco and grapevine mesophyll protoplasts. Plant Physiol. 121: 197-206.

Papadakis AK, Siminis CI, Roubelakis-Angelakis KA 2001 Reduced activity of antioxidant machinery is correlated with suppression of totipotency in plant protoplasts. Plant Physiol. 126: 434-444.

Parida AK, Das AB 2005 Salt tolerance and salinity effects on plants: a review. Ecotoxicol. Environ. Saf. 60: 324-349.

Park J, Gu Y, Lee Y, Yang Z, Lee Y 2004 Phosphatidic acid induces leaf cell death in Arabidopsis by activating the Rho-related small G protein GTPase-mediated pathway of reactive oxygen species generation. Plant Physiol. 134: 129-136.

Park JH, Halitschke R, Kim HB, Baldwin IT, Feldmann KA, Feyereisen R 2002 A knock-out mutation in allene oxide synthase results in male sterility and defective wound signal transduction in Arabidopsis due to a block in jasmonic acid biosynthesis. Plant J. 31: 1-12.

Park KY, Jung JY, Park J, Hwang JU, Kim YW, Hwang I, Lee Y 2003 A role for phosphatidylinositol 3-phosphate in abscisic acid-induced reactive oxygen species generation in guard cells. Plant Physiol. 132: 92-98.

Park LC, Zhang H, Sheu KF, Calingasan NY, Kristal BS, Lindsay JG, Gibson GE 1999 Metabolic impairment induces oxidative stress, compromises inflammatory responses, and inactivates a key mitochondrial enzyme in microglia. J. Neurochem. 72: 1948-1958.

Parsons HL, Yip JY, Vanlerberghe GC 1999 Increased respiratory restriction during phosphate-limited growth in transgenic tobacco cells lacking alternative oxidase. Plant Physiol. 121: 1309-1320.

Parvanova D, Ivanov S, Konstantinova T, Karanov E, Atanassov A, Tsvetkov T, Alexieva V, Djilianov D 2004 Transgenic tobacco plants accumulating osmolytes show reduced oxidative damage under freezing stress. Plant Physiol. Biochem. 42: 57-63.

Passardi F, Penel C, Dunand C 2004 Performing the paradoxical: how plant peroxidases modify the cell wall. Trends Plant Sci. 9: 534-540.

Pastenes C, Pimentel P, Lillo J 2005 Leaf movements and photoinhibition in relation to water stress in field-grown beans. J. Exp. Bot. 56: 425-433.

Pasternak C, Haberzettl K, Klug G 1999 Thioredoxin is involved in oxygen-regulated formation of the photosynthetic apparatus of Rhodobacter sphaeroides. J. Bacteriol. 181: 100-106.

Pasternak T, Potters G, Caubergs R, Jansen MA 2005 Complementary interactions between oxidative stress and auxins control plant growth responses at plant, organ, and cellular level. J. Exp. Bot. 56: 1991-2001.

Pastore D, Trono D, Laus MN, Di Fonzo N, Flagella Z 2007 Possible plant mitochondria involvement in cell adaptation to drought stress. A case study: durum wheat mitochondria. J. Exp. Bot. 58: 195-210.

Pastore D, Trono D, Laus MN, Di Fonzo N, Passarella S 2001 Alternative oxidase in durum wheat mitochondria. Activation by pyruvate, hydroxypyruvate and glyoxylate and physiological role. Plant Cell Physiol. 42: 1373-1382.

Patriarca EJ, Tate R, Iaccarino M 2002 Key role of bacterial NH4+ metabolism in Rhizobium-plant symbiosis. Microbiol. Mol. Biol. Rev. 66: 203-223.

Pauw B, van Duijn B, Kijne JW, Memelink J 2004 Activation of the oxidative burst by yeast elicitor in Catharanthus roseus cells occurs independently of the activation of genes involved in alkaloid biosynthesis. Plant Mol. Biol. 55: 797-805.

Pavelic D, Arpagaus S, Rawyler A, Brandle R 2000 Impact of post-anoxia stress on membrane lipids of anoxia-pretreated potato cells. A re-appraisal. Plant Physiol. 124: 1285-1292.

Pearce FG, Andrews TJ 2003 The relationship between side reactions and slow inhibition of ribulose-bisphosphate carboxylase revealed by a loop 6 mutant of the tobacco enzyme. J. Biol. Chem. 278: 32526-32536.

Pekker I, Tel-Or E, Mittler R 2002 Reactive oxygen intermediates and glutathione regulate the expression of cytosolic ascorbate peroxidase during iron-mediated oxidative stress in bean. Plant Mol. Biol. 49: 429-438.

Peleg-Grossman S, Volpin H, Levine A 2007 Root hair curling and Rhizobium infection in Medicago truncatula are mediated by phosphatidylinositide-regulated endocytosis and reactive oxygen species. J. Exp. Bot. 58: 1637-1649.

Pellinen RI, Korhonen MS, Tauriainen AA, Palva ET, Kangasjarvi J 2002 Hydrogen peroxide activates cell death and defense gene expression in birch. Plant Physiol. 130: 549-560.

Pennazio S 2003 Photosynthesis: a short history of some modern experimental approaches. Riv. Biol. 96: 73-86.

Penuelas J, Munne-Bosch S 2005 Isoprenoids: an evolutionary pool for photoprotection. Trends Plant Sci. 10: 166-169.

Perez-Gilabert M, Veldink GA, Vliegenthart JF 1996 Protection by different agents against inactivation of lipoxygenase by hydrogen peroxide. Lipids 31: 1245-1250.

Pesaresi P, Masiero S, Eubel H, Braun HP, Bhushan S, Glaser E, Salamini F, Leister D 2006 Nuclear photosynthetic gene expression is synergistically modulated by rates of protein synthesis in chloroplasts and mitochondria. Plant Cell 18: 970-091.

Peskin AV 1996 Nuclear DNA damage during NAD(P)H oxidation by membrane redox chains. Free Radic. Biol. Med. 20: 313-318.

Petrenko IuM, Vladimirov IuA 1998 A new property of aspirin and other salicylates. Their capacity for radical generation at the expense of chelating-oxidizing action on iron cations. Eksp. Klin. Farmakol. 61: 44-50.

Pfannschmidt T, Bräutigam K, Wagner R, Dietzel L, Schröter Y, Steiner S, Nykytenko A 2008 Potential regulation of gene expression in photosynthetic cells by redox and energy state: approaches towards better understanding. Ann. Bot. (Lond.) May 20 [Epub ahead of print].

Phillips AL, Ward DA, Uknes S, Appleford NE, Lange T, Huttly AK, Gaskin P, Graebe JE, Hedden P 1995 Isolation and expression of three gibberellin 20-oxidase cDNA clones from Arabidopsis. Plant Physiol. 108: 1049-1057.

Piffanelli P, Devoto A, Schulze-Lefert P 1999 Defence signalling pathways in cereals. Curr. Opin. Plant Biol. 2: 295-300.

Pitzschke A, Hirt H 2006 Mitogen-activated protein kinases and reactive oxygen species signaling in plants. Plant Physiol. 141: 351-356.

Pohnert G 2002 Phospholipase A(2) activity triggers the wound-activated chemical defense in the diatom Thalassiosira rotula. Plant Physiol. 129: 103-111.

Polle A 2001 Dissecting the superoxide dismutase-ascorbate-glutathione-pathway in chloroplasts by metabolic modeling. Computer simulations as a step towards flux analysis. Plant Physiol. 126: 445-462.

Poschl G, Stickel F, Wang XD, Seitz HK 2004 Alcohol and cancer: genetic and nutritional aspects. Proc. Nutr. Soc. 63: 65-71.

Potikha TS, Collins CC, Johnson DI, Delmer DP, Levine A 1999 The involvement of hydrogen peroxide in the differentiation of secondary walls in cotton fibers. Plant Physiol. 119: 849-858.

Pourahmad J, Rabiei M, Jokar F, O'brien PJ 2005 A comparison of hepatocyte cytotoxic mechanisms for chromate and arsenite. Toxicology 206: 449-460.

Price GD, Evans JR, von Caemmerer S, Yu JW, Badger MR 1995 Specific reduction of chloroplast glyceraldehyde-3-phosphate dehydrogenase activity by antisense RNA reduces CO2 assimilation via a reduction in ribulose bisphosphate regeneration in transgenic tobacco plants. Planta 195: 369-378.

Prochazkova D, Sairam RK, Srivastava GC, Singh DV 2001 Oxidative stress and antioxidant activity as the basis of senescence in maize leaves. Plant Sci. 161: 765-771.

Pruzinska A, Tanner G, Aubry S, Anders I, Moser S, Muller T, Ongania KH, Krautler B, Youn JY, Liljegren SJ, Hortensteiner S 2005 Chlorophyll breakdown in senescent Arabidopsis leaves. Characterization of chlorophyll catabolites and of chlorophyll catabolic enzymes involved in the degreening reaction. Plant Physiol. 139: 52-63.

Pylypenko O, Schlichting I 2004 Structural aspects of ligand binding to and electron transfer in bacterial and fungal P450s. Annu. Rev. Biochem. 73: 991-1018.

Qiu BS, Liu JY 2004 Utilization of inorganic carbon in the edible cyanobacterium Ge-Xian-Mi (Nostoc) and its role in alleviating photo-inhibition. Plant Cell Environ. 27: 1447-1458.

Raboni S, Bettati S, Mozzarelli A 2005 Identification of the geometric requirements for allosteric communication between the alpha- and beta-subunits of tryptophan synthase. J. Biol. Chem. 280: 13450-13456.

Raghavendra AS, Yin ZH, Heber U 1993 Liight-dependent pH changes in leaves of C4 plants. Comparison of the pH response to carbon dioxide and oxygen with that of C3 plants. Planta 189: 278-287.

Rainwater DT, Gossett DR, Millhollon EP, Hanna HY, Banks SW, Lucas MC 1996 The relationship between yield and the antioxidant defense system in tomatoes grown under heat stress. Free Radic. Res. 25: 421-435.

Ramachandra Reddy A, Chaitanya KV, Vivekanandan M 2004 Drought-induced responses of photosynthesis and antioxidant metabolism in higher plants. J. Plant Physiol. 161: 1189-1202.

Rao MV, Davis KR 1999 Ozone-induced cell death occurs via two distinct mechanisms in Arabidopsis: the role of salicylic acid. Plant J. 17: 603-614.

Ratkevicius N, Correa JA, Moenne A 2003 Copper accumulation, synthesis of ascorbate and activation of ascorbate peroxidase in Enteromorpha compressa (L.) Grev. (Chlorophyta) from heavy metal-enriched environments in northern Chile. Plant Cell Environ. 26: 1599-1608.

Rawyler A, Arpagaus S, Braendle R 2002 Impact of oxygen stress and energy availability on membrane stability of plant cells. Ann. Bot. (Lond.) 90: 499-507.

Razem FA, Bernards MA 2003 Reactive oxygen species production in association with suberization: evidence for an NADPH-dependent oxidase. J. Exp. Bot. 54: 935-941.

Rea G, de Pinto MC, Tavazza R, Biondi S, Gobbi V, Ferrante P, De Gara L, Federico R, Angelini R, Tavladoraki P 2004 Ectopic expression of maize polyamine oxidase and pea copper amine oxidase in the cell wall of tobacco plants. Plant Physiol. 134: 1414-1426.

Reilly K, Bernal D, Cortes DF, Gomez-Vasquez R, Tohme J, Beeching JR 2007 Towards identifying the full set of genes expressed during cassava post-harvest physiological deterioration. Plant Mol. Biol. 64: 187-203.

Reilly K, Gomez-Vasquez R, Buschmann H, Tohme J, Beeching JR 2004 Oxidative stress responses during cassava post-harvest physiological deterioration. Plant Mol. Biol. 56: 625-641.

Reilly K, Gomez-Vasquez R, Buschmann H, Tohme J, Beeching JR 2003 Oxidative stress responses during cassava post-harvest physiological deterioration. Plant Mol. Biol. 53: 669-685.

Reinhart F, Achebach S, Koch T, Unden G 2008 Reduced apo-fumarate nitrate reductase regulator (apoFNR) as the major form of FNR in aerobically growing Escherichia coli. J. Bacteriol. 190: 879-886.

Renard-Merlier D, Randoux B, Nowak E, Farcy F, Durand R, Reignault P 2007 Iodus 40, salicylic acid, heptanoyl salicylic acid and trehalose exhibit different efficacies and defence targets during a wheat/powdery mildew interaction. Phytochemistry 68: 1156-1164.

Renew S, Heyno E, Schopfer P, Liszkay A 2005 Sensitive detection and localization of hydroxyl radical production in cucumber roots and Arabidopsis seedlings by spin trapping electron paramagnetic resonance spectroscopy. Plant J. 44: 342-347.

Rentel MC, Knight MR 2004 Oxidative stress-induced calcium signaling in Arabidopsis. Plant Physiol. 135: 1471-1479.

Requena ME, Egea-Gilabert C, Candela ME 2005 Nitric oxide generation during the interaction with Phytophthora capsici of two Capsicum annuum varieties showing different degrees of sensitivity. Physiol. Plant. 124: 50-60.

Reumann S 2000 The structural properties of plant peroxisomes and their metabolic significance. Biol. Chem. 381: 639-648.

Rhee HJ, Kim EJ, Lee JK 2007 Physiological polyamines: simple primordial stress molecules. J. Cell. Mol. Med. 11: 685-703.

Rhoads DM, Umbach AL, Subbaiah CC, Siedow JN 2006 Mitochondrial reactive oxygen species. Contribution to oxidative stress and interorganellar signaling. Plant Physiol. 141: 357-366.

Rhodes D, Nadolska-Orczyk A 2001 Plant stress physiology. ENCYCLOPEDIA OF LIFE SCIENCES Nature Publishing Group www.els.net.

Ribeiro AS, Souza MO, Scofano HM, Creczynski-Pasa TB, Mignaco JA 2007 Inhibition of spinach chloroplast F0F1 by an Fe2+/ascorbate/H2O2 system. Plant Physiol. Biochem. 45: 750-756.

Rinaldi C, Kohler A, Frey P, Duchaussoy F, Ningre N, Couloux A, Wincker P, Le Thiec D, Fluch S, Martin F, Duplessis S 2007 Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina. Plant Physiol. 144: 347-366.

Ro DK, Ehlting J, Douglas CJ 2002 Cloning, functional expression, and subcellular localization of multiple NADPH-cytochrome P450 reductases from hybrid poplar. Plant Physiol. 130: 1837-1851.

Ro DK, Mah N, Ellis BE, Douglas CJ 2001 Functional characterization and subcellular localization of poplar (Populus trichocarpa x Populus deltoides) cinnamate 4-hydroxylase. Plant Physiol. 126: 317-329.

Robson CA, Vanlerberghe GC 2002 Transgenic plant cells lacking mitochondrial alternative oxidase have increased susceptibility to mitochondria-dependent and -independent pathways of programmed cell death. Plant Physiol. 129: 1908-1920.

Rodriguez AA, Cordoba AR, Ortega L, Taleisnik E 2004 Decreased reactive oxygen species concentration in the elongation zone contributes to the reduction in maize leaf growth under salinity. J. Exp. Bot. 55: 1383-1390.

Rodriguez AA, Grunberg KA, Taleisnik EL 2002 Reactive oxygen species in the elongation zone of maize leaves are necessary for leaf extension. Plant Physiol. 129: 1627-1632.

Rodriguez Milla MA, Maurer A, Rodriguez Huete A, Gustafson JP 2003 Glutathione peroxidase genes in Arabidopsis are ubiquitous and regulated by abiotic stresses through diverse signaling pathways. Plant J. 36: 602-615.

Rodriguez-Serrano M, Romero-Puertas MC, Zabalza A, Corpas FJ, Gomez M, Del Rio LA, Sandalio LM 2006 Cadmium effect on oxidative metabolism of pea (Pisum sativum L.) roots. Imaging of reactive oxygen species and nitric oxide accumulation in vivo. Plant Cell Environ. 29: 1532-1544.

Rolletschek H, Weber H, Borisjuk L 2003 Energy status and its control on embryogenesis of legumes. Embryo photosynthesis contributes to oxygen supply and is coupled to biosynthetic fluxes. Plant Physiol. 132: 1196-1206.

Romeis T, Piedras P, Jones JD 2000 Resistance gene-dependent activation of a calcium-dependent protein kinase in the plant defense response. Plant Cell 12: 803-816.

Romeis T, Piedras P, Zhang S, Klessig DF, Hirt H, Jones JD 1999 Rapid Avr9- and Cf-9 -dependent activation of MAP kinases in tobacco cell cultures and leaves: convergence of resistance gene, elicitor, wound, and salicylate responses. Plant Cell 11: 273-287.

Romero HM, Berlett BS, Jensen PJ, Pell EJ, Tien M 2004 Investigations into the role of the plastidial peptide methionine sulfoxide reductase in response to oxidative stress in Arabidopsis. Plant Physiol. 136: 3784-3794.

Romero-Puertas MC, McCarthy I, Gomez M, Sandalio LM, Corpas FJ, Del Rio LA, Palma JM 2004 Reactive oxygen species-mediated enzymatic systems involved in the oxidative action of 2,4-dichlorophenoxyacetic acid. Plant Cell Environ. 27: 1135-1148.

Romero-Puertas MC, Palma JM, Gomez M, Del Rio LA, Sandalio LM 2002 Cadmium causes the oxidative modification of proteins in pea plants. Plant Cell Environ. 25: 677-686.

Romero-Puertas MC, Rodriguez-Serrano M, Corpas FJ, Gomez M, Del Rio LA, Sandalio LM 2004 Cadmium-induced subcellular accumulation of O-2(.-) and H2O2 in pea leaves. Plant Cell Environ. 27: 1122-1134.

Rother D, Poppe L, Viergutz S, Langer B, Retey J 2001 Characterization of the active site of histidine ammonia-lyase from Pseudomonas putida. Eur. J. Biochem. 268: 6011-6019.

Rouet MA, Mathieu Y, Barbier-Brygoo H, Lauriere C 2006 Characterization of active oxygen-producing proteins in response to hypo-osmolarity in tobacco and Arabidopsis cell suspensions: identification of a cell wall peroxidase. J. Exp. Bot. 57: 1323-1332.

Rubinstein B 2000 Regulation of cell death in flower petals. Plant Mol. Biol. 44: 303-318.

Rudrappa T, Quinn WJ, Stanley-Wall NR, Bais HP 2007 A degradation product of the salicylic acid pathway triggers oxidative stress resulting in down-regulation of Bacillus subtilis biofilm formation on Arabidopsis thaliana roots. Planta 226: 283-297.

Rungsrisuriyachai K, Gadda G 2008 On the role of histidine 351 in the reaction of alcohol oxidation catalyzed by choline oxidase. Biochemistry 47: 6762-6769.

Rutschow H, Ytterberg AJ, Friso G, Nilsson R, van Wijk KJ 2008 Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis thaliana. Plant Physiol. Jul 16 [Epub ahead of print].

Ruzsa SM, Mylona P, Scandalios JG 1999 Differential response of antioxidant genes in maize leaves exposed to ozone. Redox Rep. 4: 95-103.

Saffert A, Hartmann-Schreier J, Schon A, Schreier P 2000 A dual function alpha-dioxygenase-peroxidase and NAD(+) oxidoreductase active enzyme from germinating pea rationalizing alpha-oxidation of fatty acids in plants. Plant Physiol. 123: 1545-1552.

Sage RF 2002 Variation in the k(cat) of Rubisco in C3 and C4 plants and some implications for photosynthetic performance at high and low temperature. J. Exp. Bot. 53: 609-620.

Sagi M, Davydov O, Orazova S, Yesbergenova Z, Ophir R, Stratmann JW, Fluhr R 2004 Plant respiratory burst oxidase homologs impinge on wound responsiveness and development in Lycopersicon esculentum. Plant Cell 16: 616-628.

Sagi M, Fluhr R 2001 Superoxide production by plant homologues of the gp91(phox) NADPH oxidase. Modulation of activity by calcium and by tobacco mosaic virus infection. Plant Physiol. 126: 1281-1290.

Sagi M, Fluhr R 2006 Production of reactive oxygen species by plant NADPH oxidases. Plant Physiol. 141: 336-340.

Saha SK, Uma L, Subramanian G 2003 Nitrogen stress induced changes in the marine cyanobacterium Oscillatoria willei BDU 130511. FEMS Microbiol. Ecol. 45: 263-272.

Sairam RK, Rao KV, Srivastava GC 2002 Differential response of wheat genotypes to long term salinity stress in relation to oxidative stress, antioxidant activity and osmolyte concentration. Plant Sci. 163: 1037-1046.

Sairam RK, Singh DV, Srivastava GC 2003 Changes in activities of antioxidant enzymes in sunflower leaves of different ages. Biol. Plant. 47: 61-66.

Sairam RK, Srivastava GC 2001 Water stress tolerance of wheat (Triticum aestivum L.): Variations in hydrogen peroxide accumulation and antioxidant activity in tolerant and susceptible genotypes. J. Agron. Crop Sci. 186: 63-70.

Sairam RK, Srivastava GC 2000 Induction of oxidative stress and antioxidant activity by hydrogen peroxide treatment in tolerant and susceptible wheat genotypes. Biol. Plant. 43: 381-386.

Sairam RK, Tyagi A 2004 Physiology and molecular biology of salinity stress tolerance in plants. Curr. Sci. 86: 407-421.

Saito N, Munemasa S, Nakamura Y, Shimoishi Y, Mori IC, Murata Y 2008 Roles of RCN1, regulatory A subunit of protein phosphatase 2A, in methyl jasmonate signaling and signal crosstalk between methyl jasmonate and abscisic acid. Plant Cell Physiol. Jul 22 [Epub ahead of print].

Sakamoto H, Matsuda O, Iba K 2008 ITN1, a novel gene encoding an ankyrin-repeat protein affects the ABA-mediated production of reactive oxygen species and is involved in salt stress tolerance in Arabidopsis thaliana. Plant J. Jul 9 [Epub ahead of print].

Sakamoto M, Munemura I, Tomita R, Kobayashi K 2008 Involvement of hydrogen peroxide in leaf abscission signaling, revealed by analysis with an in vitro abscission system in Capsicum plants. Plant J. Jun 28 [Epub ahead of print].

Sakamoto T, Bryant DA 1999 Nitrate transport and not photoinhibition limits growth of the freshwater cyanobacterium Synechococcus species PCC 6301 at low temperature. Plant Physiol. 119: 785-94.

Sakata T, Yokoi Y 2002 Analysis of the O-2 dependency in leaf-level photosynthesis of two Reynoutria japonica populations growing at different altitudes. Plant Cell Environ. 25: 65-74.

Saltveit ME, Choi YJ, Tomas-Barberan FA 2005 Involvement of components of the phospholipid-signaling pathway in wound-induced phenylpropanoid metabolism in lettuce (Lactuca sativa) leaf tissue. Physiol. Plant. 125: 345-355.

Salvador A 2000 Synergism analysis of biochemical systems. II. Tensor formulation and treatment of stoichiometric constraints. Math. Biosci. 163: 131-158.

Salvucci ME, Crafts-Brandner SJ 2004 Inhibition of photosynthesis by heat stress: the activation state of Rubisco as a limiting factor in photosynthesis. Physiol. Plant. 120: 179-186.

Salvucci ME, Van De Loo FJ, Stecher D 2003 Two isoforms of Rubisco activase in cotton, the products of separate genes not alternative splicing. Planta 216: 736-744.

Samaj J, Baluska F, Menzel D 2004 New signalling molecules regulating root hair tip growth. Trends Plant Sci. 9: 217-220.

Samuel MA, Ellis BE 2002 Double jeopardy: both overexpression and suppression of a redox-activated plant mitogen-activated protein kinase render tobacco plants ozone sensitive. Plant Cell 14: 2059-2069.

Samuel MA, Hall H, Krzymowska M, Drzewiecka K, Hennig J, Ellis BE 2005 SIPK signaling controls multiple components of harpin-induced cell death in tobacco. Plant J. 42: 406-416.

Sandermann H Jr 2004 Molecular ecotoxicology of plants. Trends Plant Sci. 9: 406-413.

Sanmartin M, Pateraki I, Chatzopoulou F, Kanellis AK 2007 Differential expression of the ascorbate oxidase multigene family during fruit development and in response to stress. Planta 225: 873-885.

Santillan M 2003 Allometric scaling law in a simple oxygen exchanging network: possible implications on the biological allometric scaling laws. J. Theor. Biol. 223: 249-257.

Sarath G, Hou G, Baird LM, Mitchell RB 2007 Reactive oxygen species, ABA and nitric oxide interactions on the germination of warm-season C4-grasses. Planta 226: 697-708.

Sawers G, Watson G 1998 A glycyl radical solution: oxygen-dependent interconversion of pyruvate formate-lyase. Mol. Microbiol. 29: 945-54.

Schachtman DP, Shin R 2007 Nutrient sensing and signaling: NPKS. Annu. Rev. Plant Biol. 58: 47-69.

Schaper M, Gergely S, Lykkesfeldt J, Zbaren J, Leib SL, Tauber MG, Christen S 2002 Cerebral vasculature is the major target of oxidative protein alterations in bacterial meningitis. J. Neuropathol. Exp. Neurol. 61: 605-613.

Scharte J, SchonH, Weis E 2005 Photosynthesis and carbohydrate metabolism in tobacco leaves during an incompatible interaction with Phytophthora nicotianae. Plant Cell Environ. 28: 1421-1435.

Schittko U, Hermsmeier D, Baldwin IT 2001 Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. II. Accumulation of plant mRNAs in response to insect-derived cues. Plant Physiol. 125: 701-710.

Schliess F, Gorg B, Haussinger D 2006 Pathogenetic interplay between osmotic and oxidative stress: the hepatic encephalopathy paradigm. Biol. Chem. 387: 1363-1370.

Schlogelhofer P, Garzon M, Kerzendorfer C, Nizhynska V, Bachmair A 2006 Expression of the ubiquitin variant ubR48 decreases proteolytic activity in Arabidopsis and induces cell death. Planta 223: 684-697.

Schmidt M, Grief J, Feierabend J 2006 Mode of translational activation of the catalase (cat1) mRNA of rye leaves (Secale cereale L.) and its control through blue light and reactive oxygen. Planta 223: 835-846.

Schoch G, Goepfert S, Morant M, Hehn A, Meyer D, Ullmann P, Werck-Reichhart D 2001 CYP98A3 from Arabidopsis thaliana is a 3'-hydroxylase of phenolic esters, a missing link in the phenylpropanoid pathway. J. Biol. Chem. 276: 36566-36574.

Schomburg FM, Bizzell CM, Lee DJ, Zeevaart JA, Amasino RM 2003 Overexpression of a novel class of gibberellin 2-oxidases decreases gibberellin levels and creates dwarf plants. Plant Cell 15: 151-163.

Schoolnik GK 2002 Microarray analysis of bacterial pathogenicity. Adv. Microb. Physiol. 46: 1-45.

Schopfer P, Liszkay A, Bechtold M, Frahry G, Wagner A 2002 Evidence that hydroxyl radicals mediate auxin-induced extension growth. Planta 214: 821-828.

Schottler MA, Kirchhoff H, Weis E 2004 The role of plastocyanin in the adjustment of the photosynthetic electron transport to the carbon metabolism in tobacco. Plant Physiol. 136: 4265-4274.

Schroder G, Wehinger E, Lukacin R, Wellmann F, Seefelder W, Schwab W, Schroder J 2004 Flavonoid methylation: a novel 4'-O-methyltransferase from Catharanthus roseus, and evidence that partially methylated flavanones are substrates of four different flavonoid dioxygenases. Phytochemistry 65: 1085-1094.

Schultheiss H, Dechert C, Kogel KH, Huckelhoven R 2003 Functional analysis of barley RAC/ROP G-protein family members in susceptibility to the powdery mildew fungus. Plant J. 36: 589-601.

Schutzendubel A, Polle A 2002 Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization. J. Exp. Bot. 53: 1351-1365.

Seko Y, Imura N 1997 Active oxygen generation as a possible mechanism of selenium toxicity. Biomed. Environ. Sci. 10: 333-339.

Selote DS, Khanna-Chopra R 2004 Drought-induced spikelet sterility is associated with an inefficient antioxidant defence in rice panicles. Physiol. Plant. 121: 462-471.

Shalata A, Neumann PM 2001 Exogenous ascorbic acid (vitamin C) increases resistance to salt stress and reduces lipid peroxidation. J. Exp. Bot. 52: 2207-2211.

Shanklin J, Cahoon EB 1998 Desaturation and related modifications of fatty acids. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 611-641.

Shanmuganathan A, Avery SV, Willetts SA, Houghton JE 2004 Copper-induced oxidative stress in Saccharomyces cerevisiae targets enzymes of the glycolytic pathway. FEBS Lett. 556: 253-259.

Shao HB, Chu LY, Lu ZH, Kang CM 2007 Primary antioxidant free radical scavenging and redox signaling pathways in higher plant cells. Int. J. Biol. Sci. 4: 8-14.

Shao HB, Chu LY, Shao MA, Jaleel CA, Hong-Mei M 2008 Higher plant antioxidants and redox signaling under environmental stresses. C. R. Biol. 331: 433-441.

Shao N, Krieger-Liszkay A, Schroda M, Beck CF 2007 A reporter system for the individual detection of hydrogen peroxide and singlet oxygen: its use for the assay of reactive oxygen species produced in vivo. Plant J. 50: 475-487.

Shapiro AD, Zhang C 2001 The role of NDR1 in avirulence gene-directed signaling and control of programmed cell death in Arabidopsis. Plant Physiol. 127: 1089-1101.

Sharkey TD 2005 Effects of moderate heat stress on photosynthesis: importance of thylakoid reactions, rubisco deactivation, reactive oxygen species, and thermotolerance provided by isoprene. Plant Cell Environ. 28: 269-277.

Sharkey TD, Wiberley AE, Donohue AR 2008 Isoprene emission from plants: why and how. Ann. Bot. (Lond.) 101: 5-18.

Sharma YK, Leon J, Raskin I, Davis KR 1996 Ozone-induced responses in Arabidopsis thaliana: the role of salicylic acid in the accumulation of defense-related transcripts and induced resistance. Proc. Natl. Acad. Sci. U.S.A. 93: 5099-6104.

Shaw AC, Christiansen G, Roepstorff P, Birkelund S 2000 Genetic differences in the Chlamydia trachomatis tryptophan synthase alpha-subunit can explain variations in serovar pathogenesis. Microbes Infect. 2: 581-592.

Shaw SL, Long SR 2003 Nod factor inhibition of reactive oxygen efflux in a host legume. Plant Physiol. 132: 2196-2204.

Shen W, Wei Y, Dauk M, Tan Y, Taylor DC, Selvaraj G, Zou J 2006 Involvement of a glycerol-3-phosphate dehydrogenase in modulating the NADH/NAD+ ratio provides evidence of a mitochondrial glycerol-3-phosphate shuttle in Arabidopsis. Plant Cell 18: 422-441.

Shi D, Morizono H, Aoyagi M, Tuchman M, Allewell NM 2000 Crystal structure of human ornithine transcarbamylase complexed with carbamoyl phosphate and L-norvaline at 1.9 A resolution. Proteins 39: 271-277.

Shigeoka S, Ishikawa T, Tamoi M, Miyagawa Y, Takeda T, Yabuta Y, Yoshimura K 2002 Regulation and function of ascorbate peroxidase isoenzymes. J. Exp. Bot. 53: 1305-1319.

Shikanai T, Takeda T, Yamauchi H, Sano S, Tomizawa KI, Yokota A, Shigeoka S 1998 Inhibition of ascorbate peroxidase under oxidative stress in tobacco having bacterial catalase in chloroplasts. FEBS Lett. 428: 47-51.

Shin R, Berg RH, Schachtman DP 2005 Reactive oxygen species and root hairs in Arabidopsis root response to nitrogen, phosphorus and potassium deficiency. Plant Cell Physiol. 46: 1350-1357.

Shirasu K, Schulze-Lefert P 2000 Regulators of cell death in disease resistance. Plant Mol. Biol. 44: 371-385.

Shiu CT, Lee TM 2005 Ultraviolet-B-induced oxidative stress and responses of the ascorbate-glutathione cycle in a marine macroalga Ulva fasciata. J. Exp. Bot. 56: 2851-2865.

Shringarpure R, Davies KJA 2002 Protein turnover by the proteasome in aging and disease. Free Radic. Biol. Med. 32: 1084-1089.

Shulaev V, Oliver DJ 2006 Metabolic and proteomic markers for oxidative stress. New tools for reactive oxygen species research. Plant Physiol. 141: 367-372.

Shvaleva AL, Costa E Silva F, Breia E, Jouve J, Hausman JF, Almeida MH, Maroco JP, Rodrigues ML, Pereira JS, Chaves MM 2005 Metabolic responses to water deficit in two Eucalyptus globulus clones with contrasting drought sensitivity. Tree Physiol. 26: 239-248.

Silvestrini MC, Tordi MG, Citro G, Vecchini P, Brunori M 1995 Monomeric Pseudomonas aeruginosa nitrite reductase: preparation, characterization, and kinetic properties. J. Inorg. Biochem. 57: 169-181.

Simon-Plas F, Elmayan T, Blein JP 2002 The plasma membrane oxidase NtrbohD is responsible for AOS production in elicited tobacco cells. Plant J. 31: 137-147.

Singh HP, Batish DR, Kaur S, Arora K, Kohli RK 2006 {alpha}-Pinene inhibits growth and induces oxidative stress in roots. Ann. Bot. (Lond.) 98: 1261-1269.

Singh J, Roberts MR 2004 Fusicoccin activates pathogen-responsive gene expression independently of common resistance signalling pathways, but increases disease symptoms in Pseudomonas syringae-infected tomato plants. Planta 219: 261-269.

Skleryk RS, So AK, Espie GS 2002 Effects of carbon nutrition on the physiological expression of HCO3- transport and the CO2-concentrating mechanism in the Cyanobacterium chlorogloeopsis sp. ATCC 27193. Planta 214: 572-583.

Skopelitis DS, Paranychianakis NV, Paschalidis KA, Pliakonis ED, Delis ID, Yakoumakis DI, Kouvarakis A, Papadakis AK, Stephanou EG, Roubelakis-Angelakis KA 2006 Abiotic stress generates ROS that signal expression of anionic glutamate dehydrogenases to form glutamate for proline synthesis in tobacco and grapevine. Plant Cell 18: 2767-2781.

Slesak I, Libik M, Karpinska B, Karpinski S, Miszalski Z 2007 The role of hydrogen peroxide in regulation of plant metabolism and cellular signalling in response to environmental stresses. Acta Biochim. Pol. 54: 39-50.

Smirnoff N 1993 The role of active oxygen in the response of plants to water deficit and desiccation. New Phytol. 125: 27-58.

Smirnoff N 2000 Ascorbate biosynthesis and function in photoprotection. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 355: 1455-1464.

Smirnoff N 2000 Ascorbic acid: metabolism and functions of a multi-facetted molecule. Curr. Opin. Plant Biol. 3: 229-235.

Smith AM, Ratcliffe RG, Sweetlove LJ 2004 Activation and function of mitochondrial uncoupling protein in plants. J. Biol. Chem. 279: 51944-51952.

So AK, John-McKay M, Espie GS 2002 Characterization of a mutant lacking carboxysomal carbonic anhydrase from the cyanobacterium Synechocystis PCC6803. Planta 214: 456-467.

Soboll S, Oh MH, Brown GC 1998 Control of oxidative phosphorylation, gluconeogenesis, ureagenesis and ATP turnover in isolated perfused rat liver analyzed by top-down metabolic control analysis. Eur. J. Biochem. 254: 194-201.

Sofo A, Tuzio AC, Dichio B, Xiloyannis C 2005 Influence of water deficit and rewatering on the components of the ascorbate-glutathione cycle in four interspecific Prunus hybrids. Plant Sci. 169: 403-412.

Sohaskey CD 2005 Regulation of nitrate reductase activity in Mycobacterium tuberculosis by oxygen and nitric oxide. Microbiology 151: 3803-3810.

Solstad T, Stokka AJ, Andersen OA, Flatmark T 2003 Studies on the regulatory properties of the pterin cofactor and dopamine bound at the active site of human phenylalanine hydroxylase. Eur. J. Biochem. 270: 981-990.

Sommer F, Hippler M, Biehler K, Fischer N, Rochaix JD 2003 Comparative analysis of photosensitivity in photosystem I donor and acceptor side mutants of Chlamydomonas reinhardtii. Plant Cell Environ. 26: 1881-1892.

Song CJ, Steinebrunner I, Wang X, Stout SC, Roux SJ 2006 Extracellular ATP induces the accumulation of superoxide via NADPH oxidases in Arabidopsis thaliana. Plant Physiol. 140: 1222-1232.

Spencer WE, Wetzel RG 1993 Acclimation of photosynthesis and dark respiration of a submersed angiosperm beneath ice in a temperate lake. Plant Physiol. 101: 985-991.

Spicer R, Holbrook NM 2005 Within-stem oxygen concentration and sap flow in four temperate tree species: does long-lived xylem parenchyma experience hypoxia?. Plant Cell Environ. 28: 192-201.

Spiro S, Guest JR 1990 FNR and its role in oxygen-regulated gene expression in Escherichia coli. FEMS Microbiol. Rev. 6: 399-428.

Spreitzer RJ, Salvucci ME 2002 Rubisco: structure, regulatory interactions, and possibilities for a better enzyme. Annu. Rev. Plant Biol. 53: 449-475.

Spreitzer RJ, Thow G, Zhu G 1995 Pseudoreversion substitution at large-subunit residue 54 influences the CO2/O2 specificity of chloroplast ribulose-bisphosphate carboxylase/oxygenase. Plant Physiol. 109: 681-685.

Spyrakis F, Raboni S, Cozzini P, Bettati S, Mozzarelli A 2006 Allosteric communication between alpha and beta subunits of tryptophan synthase: modelling the open-closed transition of the alpha subunit. Biochim. Biophys. Acta 1764: 1102-1109.

Sreenivasulu N, Altschmied L, Radchuk V, Gubatz S, Wobus U, Weschke W 2004 Transcript profiles and deduced changes of metabolic pathways in maternal and filial tissues of developing barley grains. Plant J. 37: 539-553.

Sreevidya V, Srinivasa Rao C, Sullia S, Ladha JK, Reddy PM 2006 Metabolic engineering of rice with soybean isoflavone synthase for promoting nodulation gene expression in rhizobia. J. Exp. Bot. 57: 1957-1969.

Stacy RA, Nordeng TW, Culianez-MacIa FA, Aalen RB 1999 The dormancy-related peroxiredoxin anti-oxidant, PER1, is localized to the nucleus of barley embryo and aleurone cells. Plant J. 19: 1-8.

Stadtman ER, Levine RL 2003 Free radical-mediated oxidation of free amino acids and amino acid residues in proteins. Amino Acids 25: 207-218.

Stadtman ER, Starke-Reed PE, Oliver CN, Carney JM, Floyd RA 1992 Protein modification in aging. E.X.S. 62: 64-72.

Stadtman TC 1996 Selenocysteine. Annu. Rev. Biochem. 65: 83-100.

Stebbins JW, Xu W, Kantrowitz ER 1989 Three residues involved in binding and catalysis in the carbamyl phosphate binding site of Escherichia coli aspartate transcarbamylase. Biochemistry 28: 2592-2600.

Steenhoudt O, Vanderleyden J 2000 Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol. Rev. 24: 487-506.

Steinbrenner J, Linden H 2001 Regulation of two carotenoid biosynthesis genes coding for phytoene synthase and carotenoid hydroxylase during stress-induced astaxanthin formation in the green alga Haematococcus pluvialis. Plant Physiol. 125: 810-817.

Steuber J, Rufibach M, Fritz G, Neese F, Dimroth P 2002 Inactivation of the Na+-translocating NADH:ubiquinone oxidoreductase from Vibrio alginolyticus by reactive oxygen species. Eur. J. Biochem. 269: 1287-1292.

Stevenson PC, Veitch NC, Simmonds MS 2007 Polyoxygenated cyclohexane derivatives and other constituents from Kaempferia rotunda L. Phytochemistry 68: 1579-1586.

Striker GG, Insausti P, Grimoldi AA 2008 Flooding effects on plants recovering from defoliation in Paspalum dilatatum and Lotus tenuis. Ann. Bot. (Lond.) 102: 247-254.

Suhita D, Raghavendra AS, Kwak JM, Vavasseur A 2004 Cytoplasmic alkalization precedes reactive oxygen species production during methyl jasmonate- and abscisic acid-induced stomatal closure. Plant Physiol. 134: 1536-1545.

Sulpice R, Tschoep H, Von Korff M, Bussis D, Usadel B, Hohne M, Witucka-Wall H, Altmann T, Stitt M, Gibon Y 2007 Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell Environ. 30: 1163-1175.

Sun K, Cui Y, Hauser BA 2005 Environmental stress alters genes expression and induces ovule abortion: reactive oxygen species appear as ovules commit to abort. Planta 222: 632-642.

Sunkar R, Bartels D, Kirch HH 2003 Overexpression of a stress-inducible aldehyde dehydrogenase gene from Arabidopsis thaliana in transgenic plants improves stress tolerance. Plant J. 35: 452-464.

Sunohara Y, Matsumoto H 2008 Quinclorac-induced cell death is accompanied by generation of reactive oxygen species in maize root tissue. Phytochemistry Jul 30 [Epub ahead of print].

Suomeng D, Zhengguang Z, Xiaobo Z, Yuanchao W 2008 Mammalian pro-apoptotic bax gene enhances tobacco resistance to pathogens. Plant Cell Rep. 27: 1559-1569.

Suss KH, Prokhorenko I, Adler K 1995 In situ association of Calvin cycle enzymes, ribulose-1,5-bisphosphate carboxylase/oxygenase activase, ferredoxin-NADP+ reductase, and nitrite reductase with thylakoid and pyrenoid membranes of Chlamydomonas reinhardtii chloroplasts … Plant Physiol. 107: 1387-1397.

Suzuki I, Sugiyami T, Omata T 1996 Regulation by cyanate of the genes involved in carbon and nitrogen assimilation in the cyanobacterium Synechococcus sp. strain PCC 7942. J. Bacteriol. 178: 2688-2694.

Suzuki KT 1996 Structure and function of metallothionein. Nippon Rinsho 54: 33-39.

Suzuki N, Mittler R 2006 Reactive oxygen species and temperature stresses: a delicate balance between signaling and destruction. Physiol. Plant. 126: 45-51.

Swaraj K, Sheokand S, Fernandez-Pascual MM, de Felipe MR 2001 Dark-induced changes in legume nodule functioning. Aust. J. Plant Physiol. 28: 429-438.

Szekely G, Abraham E, Cseplo A, Rigo G, Zsigmond L, Csiszar J, Ayaydin F, Strizhov N, Jasik J, Schmelzer E, Koncz C, Szabados L 2008 Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis. Plant J. 53: 11-28.

Tadege M, Dupuis I, Kuhlemeier C 1999 Ethanolic fermentation: new functions for an old pathway. Trends Plant Sci. 4: 320-325.

Tadege M, Kuhlemeier C 1997 Aerobic fermentation during tobacco pollen development. Plant Mol. Biol. 35: 343-354.

Takahashi Y, Berberich T, Miyazaki A, Seo S, Ohashi Y, Kusano T 2003 Spermine signalling in tobacco: activation of mitogen-activated protein kinases by spermine is mediated through mitochondrial dysfunction. Plant J. 36: 820-829.

Takemoto D, Tanaka A, Scott B 2006 A p67Phox-like regulator is recruited to control hyphal branching in a fungal-grass mutualistic symbiosis. Plant Cell 18: 2807-2821.

Takeuchi A, Yamaguchi T, Hidema J, Strid A, Kumagai T 2002 Changes in synthesis and degradation of Rubisco and LHCII with leaf age in rice (Oryza sativa L.) growing under supplementary UV-B radiation. Plant Cell Environ. 25: 695-706.

Talwar R, Rao NA, Savithri HS 2000 A change in reaction specificity of sheep liver serine hydroxymethyltransferase. Induction of NADH oxidation upon mutation of His230 to Tyr. Eur. J. Biochem. 267: 929-934.

Tamas L, Budikova S, Huttova J, Mistrik I, Simonovicova M, Siroka B 2005 Aluminum-induced cell death of barley-root border cells is correlated with peroxidase- and oxalate oxidase-mediated hydrogen peroxide production. Plant Cell Rep. 24: 189-194.

Tamasloukht M, Sejalon-Delmas N, Kluever A, Jauneau A, Roux C, Becard G, Franken P 2003 Root factors induce mitochondrial-related gene expression and fungal respiration during the developmental switch from asymbiosis to presymbiosis in the arbuscular mycorrhizal fungus Gigaspora rosea. Plant Physiol. 131: 1468-1478.

Tamogami S, Rakwal R, Kodama O 1997 Phytoalexin production elicited by exogenously applied jasmonic acid in rice leaves (Oryza sativa L.) is under the control of cytokinins and ascorbic acid. FEBS Lett. 412: 61-64.

Tanaka A, Christensen MJ, Takemoto D, Park P, Scott B 2006 Reactive oxygen species play a role in regulating a fungus-perennial ryegrass mutualistic interaction. Plant Cell 18: 1052-1066.

Tang YJ, Hwang JS, Wemmer DE, Keasling JD 2007 The Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Appl. Environ. Microbiol. 73: 718-729.

Tao DL, Oquist G, Wingsle G 1998 Active oxygen scavengers during cold acclimation of scots pine seedlings in relation to freezing tolerance. Cryobiology 37: 38-45.

Taulavuori K, Prasad MN, Taulavuori E, Laine K 2005 Metal stress consequences on frost hardiness of plants at northern high latitudes: a review and hypothesis. Environ. Pollut. 135: 209-220.

Tausz M, Sircelj H, Grill D 2004 The glutathione system as a stress marker in plant ecophysiology: is a stress-response concept valid? J. Exp. Bot. 55: 1955-1962.

Taylor MD, Erikson KM, Dobson AW, Fitsanakis VA, Dorman DC, Aschner M 2006 Effects of inhaled manganese on biomarkers of oxidative stress in the rat brain. Neurotoxicology 27: 788-797.

Taylor NL, Day DA, Millar AH 2004 Targets of stress-induced oxidative damage in plant mitochondria and their impact on cell carbon/nitrogen metabolism. J. Exp. Bot. 55: 1-10.

Taylor NL, Millar AH 2007 Oxidative stress and plant mitochondria. Methods Mol. Biol. 372: 389-403.

Tedman-Jones JD, Lei R, Jay F, Fabro G, Li X, Reiter WD, Brearley C, Jones JD 2008 Characterization of Arabidopsis mur3 mutations that result in constitutive activation of defence in petioles, but not leaves. Plant J. Jul 23 [Epub ahead of print].

Teixeira FK, Menezes-Benavente L, Galvao VC, Margis R, Margis-Pinheiro M 2006 Rice ascorbate peroxidase gene family encodes functionally diverse isoforms localized in different subcellular compartments. Planta 224: 300-314.

Tewari RK, Kumar P, Neetu, Sharma PN 2005 Signs of oxidative stress in the chlorotic leaves of iron starved plants. Plant Sci. 169: 1037-1045.

Tewari RK, Kumar P, Sharma PN 2006 Antioxidant responses to enhanced generation of superoxide anion radical and hydrogen peroxide in the copper-stressed mulberry plants. Planta 223: 1145-1153.

Thoden JB, Raushel FM, Benning MM, Rayment I, Holden HM 1999 The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution. Acta Crystallogr. D. Biol. Crystallogr. 55: 8-24.

Thoma I, Loeffler C, Sinha AK, Gupta M, Krischke M, Steffan B, Roitsch T, Mueller MJ 2003 Cyclopentenone isoprostanes induced by reactive oxygen species trigger defense gene activation and phytoalexin accumulation in plants. Plant J. 34: 363-375.

Thomas JC, Perron M, LaRosa PC, Smigocki AC 2005 Cytokinin and the regulation of a tobacco metallothionein-like gene during copper stress. Physiol. Plant. 123: 262-271.

Thompson AJ, Andrews J, Mulholland BJ, McKee JM, Hilton HW, Horridge JS, Farquhar GD, Smeeton RC, Smillie IR, Black CR, Taylor IB 2007 Overproduction of abscisic acid in tomato increases transpiration efficiency and root hydraulic conductivity and influences leaf expansion. Plant Physiol. 143: 1905-1917.

Thornton LE, Ohkawa H, Roose JL, Kashino Y, Keren N, Pakrasi HB 2004 Homologs of plant PsbP and PsbQ proteins are necessary for regulation of photosystem II activity in the Cyanobacterium Synechocystis 6803. Plant Cell 16: 2164-2175.

Tian L, DellaPenna D 2001 Characterization of a second carotenoid beta-hydroxylase gene from Arabidopsis and its relationship to the LUT1 locus. Plant Mol. Biol. 47: 379-388.

Tiedemann AV 1997 Evidence for a primary role of active oxygen species in induction of host cell death during infection of bean leaves with Botrytis cinerea. Physiol. Mol. Plant Pathol. 50: 151-166.

Tiwari BS, Belenghi B, Levine A 2002 Oxidative stress increased respiration and generation of reactive oxygen species, resulting in ATP depletion, opening of mitochondrial permeability transition, and programmed cell death. Plant Physiol. 128: 1271-1281.

Tjus SE, Moller BL, Scheller HV 1998 Photosystem I is an early target of photoinhibition in barley illuminated at chilling temperatures. Plant Physiol. 116: 755-764.

Tjus SE, Scheller HV, Andersson B, Moller BL 2001 Active oxygen produced during selective excitation of photosystem I is damaging not only to photosystem I, but also to photosystem II. Plant Physiol. 125: 2007-2015.

Tocheva EI, Eltis LD, Murphy ME 2008 Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry 47: 4452-4460.

Toffanin A, Wu Q, Maskus M, Caselia S, Abruna HD, Shapleigh JP 1996 Characterization of the gene encoding nitrite reductase and the physiological consequences of its expression in the nondenitrifying Rhizobium "hedysari" strain HCNT1. Appl. Environ. Microbiol. 62: 4019-4025.

Tokunaga T, Miyahara K, Tabata K, Esaka M 2005 Generation and properties of ascorbic acid-overproducing transgenic tobacco cells expressing sense RNA for l-galactono-1,4-lactone dehydrogenase. Planta 220: 854-863.

Tommasi F, Paciolla C, de Pinto MC, De Gara L 2001 A comparative study of glutathione and ascorbate metabolism during germination of Pinus pinea L. seeds. J. Exp. Bot. 52: 1647-1654.

Torres MA, Dangl JL 2005 Functions of the respiratory burst oxidase in biotic interactions, abiotic stress and development. Curr. Opin. Plant Biol. 8: 397-403.

Torres MA, Jones JD, Dangl JL 2006 Reactive oxygen species signaling in response to pathogens. Plant Physiol. 141: 373-378.

Torres MA, Onouchi H, Hamada S, Machida C, Hammond-Kosack KE, Jones JD 1998 Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox). Plant J. 14: 365-370.

Touchette BW, Burkholder JM 2000 Overview of the physiological ecology of carbon metabolism in seagrasses. J. Exp. Mar. Biol. Ecol. 250: 169-205.

Tran QH, Arras T, Becker S, Holighaus G, Ohlberger G, Unden G 2000 Role of glutathione in the formation of the active form of the oxygen sensor FNR ([4Fe-4S].FNR) and in the control of FNR function. Eur. J. Biochem. 267: 4817-4824.

Traverso JA, Vignols F, Cazalis R, Serrato AJ, Pulido P, Sahrawy M, Meyer Y, Cejudo FJ, Chueca A 2008 Immunocytochemical localization of Pisum sativum TRXs f and m in non-photosynthetic tissues. J. Exp. Bot. 59: 1267-1277.

Treiber N, Schulz GE 2008 Structure of 2,6-dihydroxypyridine 3-hydroxylase from a nicotine-degrading pathway. J. Mol. Biol. 379: 94-104.

Triantaphylides C, Krischke M, Hoeberichts FA, Ksas B, Gresser G, Havaux M, Van Breusegem F, Mueller MJ 2008 Singlet oxygen is the major reactive oxygen species involved in photo-oxidative damage to plants. Plant Physiol. Aug 1 [Epub ahead of print].

Tripathi BN, Gaur JP 2004 Relationship between copper- and zinc-induced oxidative stress and proline accumulation in Scenedesmus sp. Planta 219: 397-404.

Trono D, Flagella Z, Laus MN, Di Fonzo N, Pastore D 2004 The uncoupling protein and the potassium channel are activated by hyperosmotic stress in mitochondria from durum wheat seedlings. Plant Cell Environ. 27: 437-448.

Trujillo M, Altschmied L, Schweizer P, Kogel KH, Huckelhoven R 2006 Respiratory burst oxidase homologue A of barley contributes to penetration by the powdery mildew fungus Blumeria graminis f. sp. hordei. J. Exp. Bot. 57: 3781-3791.

Tsuda T, Shiga K, Ohshima K, Kawakishi S, Osawa T 1996 Inhibition of lipid peroxidation and the active oxygen radical scavenging effect of anthocyanin pigments isolated from Phaseolus vulgaris L. Biochem. Pharmacol. 52: 1033-1039.

Tsugane K, Kobayashi K, Niwa Y, Ohba Y, Wada K, Kobayashi H 1999 A recessive Arabidopsis mutant that grows photoautotrophically under salt stress shows enhanced active oxygen detoxification. Plant Cell 11: 1195-1206.

Tsuji N, Hirayanagi N, Iwabe O, Namba T, Tagawa M, Miyamoto S, Miyasaka H, Takagi M, Hirata K, Miyamoto K 2003 Regulation of phytochelatin synthesis by zinc and cadmium in marine green alga, Dunaliella tertiolecta. Phytochemistry 62: 453-459.

Tsukamoto S, Morita S, Hirano E, Yokoi H, Masumura T, Tanaka K 2005 A novel cis-element that is responsive to oxidative stress regulates three antioxidant defense genes in rice. Plant Physiol. 137: 317-327.

Turk EM, Fujioka S, Seto H, Shimada Y, Takatsuto S, Yoshida S, Denzel MA, Torres QI, Neff MM 2003 CYP72B1 inactivates brassinosteroid hormones: an intersection between photomorphogenesis and plant steroid signal transduction. Plant Physiol. 133: 1643-1653.

Turk EM, Fujioka S, Seto H, Shimada Y, Takatsuto S, Yoshida S, Wang H, Torres QI, Ward JM, Murthy G, Zhang J, Walker JC, Neff MM 2005 BAS1 and SOB7 act redundantly to modulate Arabidopsis photomorphogenesis via unique brassinosteroid inactivation mechanisms. Plant J. 42: 23-34.

Tuteja N 2007 Mechanisms of high salinity tolerance in plants. Methods Enzymol. 428: 419-438.

Umbach AL, Fiorani F, Siedow JN 2005 Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue. Plant Physiol. 139: 1806-1820.

Uttaro AD 2006 Biosynthesis of polyunsaturated fatty acids in lower eukaryotes. IUBMB Life 58: 563-571.

Vacca RA, de Pinto MC, Valenti D, Passarella S, Marra E, De Gara L 2004 Production of reactive oxygen species, alteration of cytosolic ascorbate peroxidase, and impairment of mitochondrial metabolism are early events in heat shock-induced programmed cell death in tobacco bright-yellow 2 cells. Plant Physiol. 134: 1100-1112.

Vacca RA, Valenti D, Bobba A, Merafina RS, Passarella S, Marra E 2006 Cytochrome c is released in a reactive oxygen species-dependent manner and is degraded via caspase-like proteases in tobacco Bright-Yellow 2 cells en route to heat shock-induced cell death. Plant Physiol. 141: 208-219.

Van Breusegem F, Bailey-Serres J, Mittler R 2008 Unraveling the tapestry of networks involving reactive oxygen species in plants. Plant Physiol. 147: 978-984.

Van Breusegem F, Dat JF 2006 Reactive oxygen species in plant cell death. Plant Physiol. 141: 384-390.

van Hoek B 2004 Non-alcoholic fatty liver disease: a brief review. Scand. J. Gastroenterol. Suppl. 241: 56-59.

van Hunnik E, Amoroso G, Sultemeyer D 2002 Uptake of CO2 and bicarbonate by intact cells and chloroplasts of Tetraedron minimum and Chlamydomonas noctigama. Planta 215: 763-769.

Van Spanning RJ, Houben E, Reijnders WN, Spiro S, Westerhoff HV, Saunders N 1999 Nitric oxide is a signal for NNR-mediated transcription activation in Paracoccus denitrificans. J. Bacteriol. 181: 4129-4132.

van Tol-Steye H, Lodder JC, Mansvelder HD, Planta RJ, van Heerikhuizen H, Kits KS 1999 Roles of G-protein beta gamma, arachidonic acid, and phosphorylation inconvergent activation of an S-like potassium conductance by dopamine, Ala-Pro-Gly-Trp-NH2, and Phe-Met-Arg-Phe-NH2. J. Neurosci. 19: 3739-3751.

Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, Gruissem W, Inze D, Van Breusegem F 2005 Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol. 139: 806-821.

Vanlerberghe GC, Robson CA, Yip JY 2002 Induction of mitochondrial alternative oxidase in response to a cell signal pathway down-regulating the cytochrome pathway prevents programmed cell death. Plant Physiol. 129: 1829-1842.

Vanyushin BF, Bakeeva LE, Zamyatnina VA, Aleksandrushkina NI 2004 Apoptosis in plants: specific features of plant apoptotic cells and effect of various factors and agents. Int. Rev. Cytol. 233: 135-179.

Varet A, Hause B, Hause G, Scheel D, Lee J 2003 The Arabidopsis NHL3 gene encodes a plasma membrane protein and its overexpression correlates with increased resistance to Pseudomonas syringae pv. tomato DC3000. Plant Physiol. 132: 2023-2033.

Vauclare P, Diallo N, Bourguignon J, Macherel D, Douce R 1996 Regulation of the expression of the glycine decarboxylase complex during pea leaf development. Plant Physiol. 112: 1523-1530.

Velikova V, Edreva A, Loreto F 2004 Endogenous isoprene protects Phragmites australis leaves against singlet oxygen. Physiol. Plant. 122: 219-225.

Velikova V, Loreto F 2005 On the relationship between isoprene emission and thermotolerance in Phragmites australis leaves exposed to high temperatures and during the recovery from a heat stress. Plant Cell Environ. 28: 318-327.

Velikova V, Pinelli P, Pasqualini S, Reale L, Ferranti F, Loreto F 2005 Isoprene decreases the concentration of nitric oxide in leaves exposed to elevated ozone. New Phytol. 166: 419-425.

Veljanovski V, Vanderbeld B, Knowles VL, Snedden WA, Plaxton WC 2006 Biochemical and molecular characterization of AtPAP26, a vacuolar purple acid phosphatase upregulated in phosphate-deprived Arabidopsis suspension cells and seedlings. Plant Physiol. 142: 1282-1293.

Venn AA, Loram JE, Douglas AE 2008 Photosynthetic symbioses in animals. J. Exp. Bot. 59: 1069-1080.

Vercesi AE, Borecky J, Maia ID, Arruda P, Cuccovia IM, Chaimovich H 2006 Plant uncoupling mitochondrial proteins. Annu. Rev. Plant Biol. 57: 383-404.

Verploegen S, van Leeuwen CM, van Deutekom HW, Lammers JW, Koenderman L, Coffer PJ 2002 Role of Ca2+/calmodulin regulated signaling pathways in chemoattractant induced neutrophil effector functions. Comparison with the role of phosphotidylinositol-3 kinase. Eur. J. Biochem. 269: 4625-4634.

Vidal G, Ribas-Carbo M, Garmier M, Dubertret G, Rasmusson AG, Mathieu C, Foyer CH, De Paepe R 2007 Lack of respiratory chain complex I impairs alternative oxidase engagement and modulates redox signaling during elicitor-induced cell death in tobacco. Plant Cell 19: 640-655.

Vilar-Rojas C, Guzman-Grenfell AM, Hicks JJ 1996 Participation of oxygen-free radicals in the oxido-reduction of proteins. Arch. Med. Res. 27: 1-6.

Vilela BJ, Carvalho LC, Ferreira J, Amancio S 2007 Gain of function of stomatal movements in rooting Vitis vinifera L. plants: regulation by H(2)O(2) is independent of ABA before the protruding of roots. Plant Cell Rep. 26: 2149-2157.

Virolainen E, Blokhina O, Fagerstedt K 2002 Ca2+-induced high amplitude swelling and cytochrome c release from wheat (Triticum aestivum L.) mitochondria under anoxic stress. Ann. Bot. (Lond.) 90: 509-516.

Voegele RT, Hahn M, Lohaus G, Link T, Heiser I, Mendgen K 2005 Possible roles for mannitol and mannitol dehydrogenase in the biotrophic plant pathogen Uromyces fabae. Plant Physiol. 137: 190-198.

Vogel JT, Tan BC, McCarty DR, Klee HJ 2008 The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificity, cleaving multiple carotenoids at two different bond positions. J. Biol. Chem. 283: 11364-11373.

Volkov RA, Panchuk II, Mullineaux PM, Schoffl F 2006 Heat stress-induced H(2)O(2) is required for effective expression of heat shock genes in Arabidopsis. Plant Mol. Biol. 61: 733-746.

Vollack KU, Hartig E, Korner H, Zumft WG 1999 Multiple transcription factors of the FNR family in denitrifying Pseudomonas stutzeri: characterization of four fnr-like genes, regulatory responses and cognate metabolic processes. Mol. Microbiol. 31: 1681-1694.

Vranova E, Inze D, Van Breusegem F 2002 Signal transduction during oxidative stress. J. Exp. Bot. 53: 1227-1236.

Vriezen WH, van Rijn CP, Voesenek LA, Mariani C 1997 A homolog of the Arabidopsis thaliana ERS gene is actively regulated in Rumex palustris upon flooding. Plant J. 11: 1265-1271.

Vyas D, Kumar S, Ahuja PS 2007 Tea (Camellia sinensis) clones with shorter periods of winter dormancy exhibit lower accumulation of reactive oxygen species. Tree Physiol. 27: 1253-1259.

Wada N, Kinoshita S, Matsuo M, Amako K, Miyake C, Asada K 1998 Purification and molecular properties of ascorbate peroxidase from bovine eye. Biochem. Biophys. Res. Commun. 242: 256-261.

Wagner D, Przybyla D, Op den Camp R, Kim C, Landgraf F, Lee KP, Wursch M, Laloi C, Nater M, Hideg E, Apel K 2004 The genetic basis of singlet oxygen-induced stress responses of Arabidopsis thaliana. Science 306: 1183-1185.

Wagner T, Shumilin IA, Bauerle R, Kretsinger RH 2000 Structure of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Escherichia coli: comparison of the Mn(2+)*2-phosphoglycolate and the Pb(2+)*2-phosphoenolpyruvate complexes and implications for catalysis. J. Mol. Biol. 301: 389-399.

Wallace DC 2007 Why do we still have a maternally inherited mitochondrial DNA? Insights from evolutionary medicine. Annu. Rev. Biochem. 76: 781-821.

Wang P, Duan W, Takabayashi A, Endo T, Shikanai T, Ye JY, Mi H 2006 Chloroplastic NAD(P)H dehydrogenase in tobacco leaves functions in alleviation of oxidative damage caused by temperature stress. Plant Physiol. 141: 465-474.

Watabe S, Hasegawa H, Takimoto K, Yamamoto Y, Takahashi SY 1995 Possible function of SP-22, a substrate of mitochondrial ATP-dependent protease, as a radical scavenger. Biochem. Biophys. Res. Commun. 213: 1010-1016.

Weber H, Borisjuk L, Wobus U 2005 Molecular physiology of legume seed development. Annu. Rev. Plant Biol. 56: 253-279.

Weinberger F, Pohnert G, Berndt ML, Bouarab K, Kloareg B, Potin P 2005 Apoplastic oxidation of L-asparagine is involved in the control of the green algal endophyte Acrochaete operculata Correa & Nielsen by the red seaweed Chondrus crispus Stackhouse. J. Exp. Bot. 56: 1317-1326.

Weir TL, Bais HP, Stull VJ, Callaway RM, Thelen GC, Ridenour WM, Bhamidi S, Stermitz FR, Vivanco JM 2006 Oxalate contributes to the resistance of Gaillardia grandiflora and Lupinus sericeus to a phytotoxin produced by Centaurea maculosa. Planta 223: 785-795.

Wellmann F, Matern U, Lukacin R 2004 Significance of C-terminal sequence elements for Petunia flavanone 3beta-hydroxylase activity. FEBS Lett. 561: 149-154.

Weng XY, Zheng CJ, Xu HX, Sun JY 2007 Characteristics of photosynthesis and functions of the water-water cycle in rice (Oryza sativa) leaves in response to potassium deficiency. Physiol. Plant. 131: 614-621.

Wenzel P, Hink U, Oelze M, Schuppan S, Schaeuble K, Schildknecht S, Ho KK, Weiner H, Bachschmid M, Munzel T, Daiber A 2007 Role of reduced lipoic acid in the redox regulation of mitochondrial aldehyde dehydrogenase (aldh-2) activity: implications for mitochondrial oxidative stress and nitrate tolerance. J. Biol. Chem. 282: 792-799.

Wigoda N, Ben-Nissan G, Granot D, Schwartz A, Weiss D 2006 The gibberellin-induced, cysteine-rich protein GIP2 from Petunia hybrida exhibits in planta antioxidant activity. Plant J. 48: 796-805.

Williams ME, Torabinejad J, Cohick E, Parker K, Drake EJ, Thompson JE, Hortter M, Dewald DB 2005 Mutations in the Arabidopsis phosphoinositide phosphatase gene SAC9 lead to overaccumulation of PtdIns(4,5)P2 and constitutive expression of the stress-response pathway. Plant Physiol. 138: 686-700.

Willows RD, Mayer SM, Foulk MS, DeLong A, Hanson K, Chory J, Beale SI 2000 Phytobilin biosynthesis: the Synechocystis sp. PCC 6803 heme oxygenase-encoding ho1 gene complements a phytochrome-deficient Arabidopsis thalianna hy1 mutant. Plant Mol. Biol. 43: 113-120.

Wilson ID, Neill SJ, Hancock JT 2008 Nitric oxide synthesis and signalling in plants. Plant Cell Environ. 31: 622-631.

Wingsle G, Karpinski S 1996 Differential redox regulation by glutathione of glutathione reductase and CuZn-superoxide dismutase gene expression in Pinus sylvestris L. needles. Planta 198: 151-157.

Wohlgemuth H, Mittelstrass K, Kschieschan S, Bender J, Weigel HJ, Overmyer K, Kangasjarvi J, Sandermann H, Langebartels C 2002 Activation of an oxidative burst is a general feature of sensitive plants exposed to the air pollutant ozone. Plant Cell Environ. 25: 717-726.

Wojtaszek P 1997 Oxidative burst: an early plant response to pathogen infection. Biochem. J. 322: 681-692.

Wolfertz M, Sharkey TD, Boland W, Kuhnemann F 2004 Rapid regulation of the methylerythritol 4-phosphate pathway during isoprene synthesis. Plant Physiol. 135: 1939-1945.

Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K 2004 Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice. Plant Physiol. 135: 1447-1456.

Woo HR, Kim JH, Nam HG, Lim PO 2004 The delayed leaf senescence mutants of Arabidopsis, ore1, ore3, and ore9 are tolerant to oxidative stress. Plant Cell Physiol. 45: 923-932.

Wu CY, Bird AJ, Winge DR, Eide DJ 2007 Regulation of the yeast TSA1 peroxiredoxin by ZAP1 is an adaptive response to the oxidative stress of zinc deficiency. J. Biol. Chem. 282: 2184-2195.

Wu G, Shortt BJ, Lawrence EB, Leon J, Fitzsimmons KC, Levine EB, Raskin I, Shah DM 1997 Activation of host defense mechanisms by elevated production of H2O2 in transgenic plants. Plant Physiol. 115: 427-435.

Wu G, Shortt BJ, Lawrence EB, Levine EB, Fitzsimmons KC, Shah DM 1995 Disease resistance conferred by expression of a gene encoding H2O2-generating glucose oxidase in transgenic potato plants. Plant Cell 7: 1357-1368.

Wu HM, Chi KH, Lin WW 2002 Proteasome inhibitors stimulate activator protein-1 pathway via reactive oxygen species production. FEBS Lett. 526: 101-105.

Wu J, Kurten EL, Monshausen G, Hummel GM, Gilroy S, Baldwin IT 2007 NaRALF, a peptide signal essential for the regulation of root hair tip apoplastic pH in Nicotiana attenuata, is required for root hair development and plant growth in native soils. Plant J. 52: 877-890.

Wu Q, Knowles R 1994 Cellular regulation of nitrate uptake in denitrifying Flexibacter canadensis. Can. J. Microbiol. 40: 576-582.

Wube AA, Wenzig EM, Gibbons S, Asres K, Bauer R, Bucar F 2008 Constituents of the stem bark of Discopodium penninervium and their LTB4 and COX-1 and -2 inhibitory activities. Phytochemistry 69: 982-987.

Wyka TP, Luttge UE 2003 Contribution of C3 carboxylation to the circadian rhythm of carbon dioxide uptake in a Crassulacean acid metabolism plant Kalanchoe daigremontiana. J. Exp. Bot. 54: 1471-1479.

Wyman M 1999 Diel rhythms in ribulose-1,5-bisphosphate carboxylase/oxygenase and glutamine synthetase gene expression in a natural population of marine picoplanktonic cyanobacteria (Synechococcus spp.). Appl. Environ. Microbiol. 65: 3651-3659.

Xie G, Schepetkin IA, Siemsen DW, Kirpotina LN, Wiley JA, Quinn MT 2008 Fractionation and characterization of biologically-active polysaccharides from Artemisia tripartita. Phytochemistry 69: 1359-1371.

Xie Z, Askari A 2002 Na(+)/K(+)-ATPase as a signal transducer. Eur. J. Biochem. 269: 2434-2439.

Xie Z, Chen Z 1999 Salicylic acid induces rapid inhibition of mitochondrial electron transport and oxidative phosphorylation in tobacco cells. Plant Physiol. 120: 217-226.

Xing H, Tan LL, An LH, Zhao ZG, Wang SM, Zhang CL 2004 Evidence for the involvement of nitric oxide and reactive oxygen species in osmotic stress tolerance of wheat seedlings: Inverse correlation between leaf abscisic acid accumulation and leaf water loss. Plant Growth Regul. 42: 61-68.

Xiong L, Zhu JK 2002 Molecular and genetic aspects of plant responses to osmotic stress. Plant Cell Environ. 25: 131-139.

Xu C, Moellering ER, Fan J, Benning C 2008 Mutation of a mitochondrial outer membrane protein affects chloroplast lipid biosynthesis. Plant J. 54: 163-175.

Yabuta Y, Motoki T, Yoshimura K, Takeda T, Ishikawa T, Shigeoka S 2002 Thylakoid membrane-bound ascorbate peroxidase is a limiting factor of antioxidative systems under photo-oxidative stress. Plant J. 32: 915-925.

Yaeno T, Matsuda O, Iba K 2004 Role of chloroplast trienoic fatty acids in plant disease defense responses. Plant J. 40: 931-941.

Yamaguchi LF, Lago JH, Tanizaki TM, Mascio PD, Kato MJ 2006 Antioxidant activity of prenylated hydroquinone and benzoic acid derivatives from Piper crassinervium Kunth. Phytochemistry 67: 1838-1843.

Yamamizo C, Kuchimura K, Kobayashi A, Katou S, Kawakita K, Jones JD, Doke N, Yoshioka H 2006 Rewiring mitogen-activated protein kinase cascade by positive feedback confers potato blight resistance. Plant Physiol. 140: 681-692.

Yamamoto H, Hori M, Kuwajima H, Inoue K 2003 Formation of benzoquinol moiety in cornoside by salidroside mono-oxygenase, a cytochrome P450 enzyme, from Abeliophyllum distichumcell suspension cultures. Planta 216: 432-436.

Yamamoto Y, Kobayashi Y, Devi SR, Rikiishi S, Matsumoto H 2002 Aluminum toxicity is associated with mitochondrial dysfunction and the production of reactive oxygen species in plant cells. Plant Physiol. 128: 63-72.

Yamanishi M, Yunoki M, Tobimatsu T, Sato H, Matsui J, Dokiya A, Iuchi Y, Oe K, Suto K, Shibata N, Morimoto Y, Yasuoka N, Toraya T 2002 The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol. Eur. J. Biochem. 269: 4484-4494.

Yamasaki H 2005 The NO world for plants: achieving balance in an open system. Plant Cell Environ. 28: 78-84.

Yamasaki H, Sakihama Y 2000 Simultaneous production of nitric oxide and peroxynitrite by plant nitrate reductase: in vitro evidence for the NR-dependent formation of active nitrogen species. FEBS Lett. 468: 89-92.

Yamashita A, Nijo N, Pospisil P, Morita N, Takenaka D, Aminaka R, Yamamoto Y, Yamamoto Y 2008 Quality control of photosystem II: reactive oxygen species are responsible for the damage to photosystem II under moderate heat stress. J. Biol. Chem. Jul 29 [Epub ahead of print].

Yan S, Tang Z, Su W, Sun W 2005 Proteomic analysis of salt stress-responsive proteins in rice root. Proteomics 5: 235-244.

Yanagimachi KS, Stafford DE, Dexter AF, Sinskey AJ, Drew S, Stephanopoulos G 2001 Application of radiolabeled tracers to biocatalytic flux analysis. Eur. J. Biochem. 268: 4950-4960.

Yang X, Wen X, Gong H, Lu Q, Yang Z, Tang Y, Liang Z, Lu C 2007 Genetic engineering of the biosynthesis of glycinebetaine enhances thermotolerance of photosystem II in tobacco plants. Planta 225: 719-733.

Yang Y, Qi M, Mei C 2004 Endogenous salicylic acid protects rice plants from oxidative damage caused by aging as well as biotic and abiotic stress. Plant J. 40: 909-919.

Yang ZW, Yang FY 1997 Sensitivity of Ca2+ transport of mitochondria to reactive oxygen species. Biosci. Rep. 17: 557-567.

Yannarelli GG, Noriega GO, Batlle A, Tomaro ML 2006 Heme oxygenase up-regulation in ultraviolet-B irradiated soybean plants involves reactive oxygen species. Planta 224: 1154-1162.

Yao N, Greenberg JT 2006 Arabidopsis ACCELERATED CELL DEATH2 modulates programmed cell death. Plant Cell 18: 397-411.

Yao N, Tada Y, Sakamoto M, Nakayashiki H, Park P, Tosa Y, Mayama S 2002 Mitochondrial oxidative burst involved in apoptotic response in oats. Plant J. 30: 567-579.

Yesbergenova Z, Yang G, Oron E, Soffer D, Fluhr R, Sagi M 2005 The plant Mo-hydroxylases aldehyde oxidase and xanthine dehydrogenase have distinct reactive oxygen species signatures and are induced by drought and abscisic acid. Plant J. 42: 862-876.

Yeskaliyeva B, Mesaik MA, Abbaskhan A, Kulsoom A, Burasheva GSh, Abilov ZhA, Choudhary MI, Atta-Ur-Rahman 2006 Bioactive flavonoids and saponins from Climacoptera obtusifolia. Phytochemistry 67: 2392-2397.

Yoshida K, Igarashi E, Mukai M, Hirata K, Miyamoto K 2003 Induction of tolerance to oxidative stress in the green alga, Chlamydomonas reinhardtii, by abscisic acid. Plant Cell Environ. 26: 451-457.

Yoshikawa Y, Suzuki M, Chen N, Zinchenko AA, Murata S, Kanbe T, Nakai T, Oana H, Yoshikawa K 2003 Ascorbic acid induces a marked conformational change in long duplex DNA. Eur. J. Biochem. 270: 3101-3106.

Yoshimura K, Ogawa T, Ueda Y, Shigeoka S 2007 AtNUDX1, an 8-oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate pyrophosphohydrolase, is responsible for eliminating oxidized nucleotides in Arabidopsis. Plant Cell Physiol. 48: 1438-1449.

Yoshioka H, Numata N, Nakajima K, Katou S, Kawakita K, Rowland O, Jones JD, Doke N 2003 Nicotiana benthamiana gp91(phox) homologs NbrbohA and NbrbohB participate in H2O2 accumulation and resistance to Phytophthora infestans. Plant Cell 15: 706-718.

Youssefian S, Nakamura M, Orudgev E, Kondo N 2001 Increased cysteine biosynthesis capacity of transgenic tobacco overexpressing an O-acetylserine(thiol) lyase modifies plant responses to oxidative stress. Plant Physiol. 126: 1001-1011.

Ytterberg AJ, Peltier JB, van Wijk KJ 2006 Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol. 140: 984-997.

Yun BW, Atkinson HA, Gaborit C, Greenland A, Read ND, Pallas JA, Loake GJ 2003 Loss of actin cytoskeletal function and EDS1 activity, in combination, severely compromises non-host resistance in Arabidopsis against wheat powdery mildew. Plant J. 34: 768-777.

Yurt N, Sears J, Lewandowski Z 2002 Multiple substrate growth kinetics of Leptothrix discophora SP-6. Biotechnol. Prog. 18: 994-1002.

Zaka R, Vandecasteele CM, Misset MT 2002 Effects of low chronic doses of ionizing radiation on antioxidant enzymes and G6PDH activities in Stipa capillata (Poaceae). J. Exp. Bot. 53: 1979-1987.

Zamora R, Alaiz M, Hidalgo FJ 1997 Feed-back inhibition of oxidative stress by oxidized lipid/amino acid reaction products. Biochemistry 36: 15765-15771.

Zaninotto F, La Camera S, Polverari A, Delledonne M 2006 Cross talk between reactive nitrogen and oxygen species during the hypersensitive disease resistance response. Plant Physiol. 141: 379-383.

Zarter CR, Adams WW 3rd, Ebbert V, Adamska I, Jansson S, Demmig-Adams B 2006 Winter acclimation of PsbS and related proteins in the evergreen Arctostaphylos uva-ursi as influenced by altitude and light environment. Plant Cell Environ. 29: 869-878.

Zhang A, Jiang M, Zhang J, Tan M, Hu X 2006 Mitogen-activated protein kinase is involved in abscisic acid-induced antioxidant defense and acts downstream of reactive oxygen species production in leaves of maize plants. Plant Physiol. 141: 475-487.

Zhang B, Chen K, Bowen J, Allan A, Espley R, Karunairetnam S, Ferguson I 2006 Differential expression within the LOX gene family in ripening kiwifruit. J. Exp. Bot. 57: 3825-3836.

Zhang L, Xing D 2008 Methyl jasmonate induces production of reactive oxygen species and alterations in mitochondrial dynamics that precede photosynthetic dysfunction and subsequent cell death. Plant Cell Physiol. 49: 1092-1111.

Zhang W, Yu L, Zhang Y, Wang X 2005 Phospholipase D in the signaling networks of plant response to abscisic acid and reactive oxygen species. Biochim. Biophys. Acta 1736: 1-9.

Zhang X, Vincent AS, Halliwell B, Wong KP 2004 A mechanism of sulfite neurotoxicity: direct inhibition of glutamate dehydrogenase. J. Biol. Chem. 279: 43035-43045.

Zhang X, Zhang L, Dong F, Gao J, Galbraith DW, Song CP 2001 Hydrogen peroxide is involved in abscisic acid-induced stomatal closure in Vicia faba. Plant Physiol. 126: 1438-1448.

Zhang Z, Barlow JN, Baldwin JE, Schofield CJ 1997 Metal-catalyzed oxidation and mutagenesis studies on the iron(II) binding site of 1-aminocyclopropane-1-carboxylate oxidase. Biochemistry 36: 15999-16007.

Zhang Z, Wei L, Zou X, Tao Y, Liu Z, Zheng Y 2008 Submergence-responsive microRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann. Bot. (Lond.) Jul 31 [Epub ahead of print].

Zhao J, Davis LC, Verpoorte R 2005 Elicitor signal transduction leading to production of plant secondary metabolites. Biotechnol. Adv. 23: 283-333.

Zhao M, Antunes F, Eaton JW, Brunk UT 2003 Lysosomal enzymes promote mitochondrial oxidant production, cytochrome c release and apoptosis. Eur. J. Biochem. 270: 3778-3786.

Zhao ZG, Chen GC, Zhang CL 2001 Interaction between reactive oxygen species and nitric oxide in drought-induced abscisic acid synthesis in root tips of wheat seedlings. Aust. J. Plant Physiol. 28: 1055-1061.

Zheng K, Pan JW, Ye L, Fu Y, Peng HZ, Wan BY, Gu Q, Bian HW, Han N, Wang JH, Kang B, Pan JH, Shao HH, Wang WZ, Zhu MY 2007 Programmed cell death-involved aluminum toxicity in yeast alleviated by antiapoptotic members with decreased calcium signals. Plant Physiol. 143: 38-49.

Zhou RL, Zhao HL 2004 Seasonal pattern of antioxidant enzyme system in the roots of perennial forage grasses grown in alpine habitat, related to freezing tolerance. Physiol. Plant. 121: 399-408.

Zhou X, Ferraris JD, Burg MB 2006 Mitochondrial reactive oxygen species contribute to high NaCl-induced activation of the transcription factor TonEBP/OREBP. Am. J. Physiol. Renal Physiol. 290: F1169-F1176.

Zhou X, Ferraris JD, Cai Q, Agarwal A, Burg MB 2005 Increased reactive oxygen species contribute to high NaCl-induced activation of the osmoregulatory transcription factor TonEBP/OREBP. Am. J. Physiol. Renal Physiol. 289: F377-F385.

Zhou YH, Yu JQ, Huang LF, Nogues S 2004 The relationship between CO2 assimilation, photosynthetic electron transport and water-water cycle in chill-exposed cucumber leaves under low light and subsequent recovery. Plant Cell Environ. 27: 1503-1514.

Zhu XG, Portis AR, Long SP 2004 Would transformation of C-3 crop plants with foreign Rubisco increase productivity? A computational analysis extrapolating from kinetic properties to canopy photosynthesis. Plant Cell Environ. 27: 155-165.

Zhu Y, Nomura T, Xu Y, Zhang Y, Peng Y, Mao B, Hanada A, Zhou H, Wang R, Li P, Zhu X, Mander LN, Kamiya Y, Yamaguchi S, He Z 2006 ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice. Plant Cell 18: 442-456.

Ziegler A, Zaugg CE, Buser PT, Seelig J, Kunnecke B 2002 Non-invasive measurements of myocardial carbon metabolism using in vivo C-13 NMR spectroscopy. NMR Biomed. 15: 222-234.

Zou LP, Li HX, Ouyang B, Zhang JH, Ye ZB 2005 Molecular cloning, expression and mapping analysis of a novel cytosolic ascorbate peroxidase gene from tomato. DNA Seq. 16: 456-461.

Zumft WG 2005 Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type. J. Inorg. Biochem. 99: 194-215.

Number of references = 1048