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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, amino acid and transport

Abd-El Baki GK, Siefritz F, Man H-M, Weiner H, Kaldenhoff R, Kaiser WM 2000 Nitrate reductase in Zea mays L. under salinity. Plant Cell Environ. 23: 515-521.

Abee T, Palmen R, Hellingwerf KJ, Konings WN 1990 Osmoregulation in Rhodobacter sphaeroides. J. Bacteriol. 172: 149-154.

Ainsworth EA, Rogers A, Leakey AD, Heady LE, Gibon Y, Stitt M, Schurr U 2007 Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? J. Exp. Bot. 58: 579-591.

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Alfieri RR, Petronini PG, Bonelli MA, Desenzani S, Cavazzoni A, Borghetti AF, Wheeler KP 2004 Roles of compatible osmolytes and heat shock protein 70 in the induction of tolerance to stresses in porcine endothelial cells. J. Physiol. (London) 555: 757-767.

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Amarasinghe BH, de Bruxelles GL, Braddon M, Onyeocha I, Forde BG, Udvardi MK 1998 Regulation of GmNRT2 expression and nitrate transport activity in roots of soybean (Glycine max). Planta 206: 44-52.

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Amir R, Hacham Y, Galili G 2002 Cystathionine gamma-synthase and threonine synthase operate in concert to regulate carbon flow towards methionine in plants. Trends Plant Sci. 7: 153-157.

Aoki N, Whitfeld P, Hoeren F, Scofield G, Newell K, Patrick J, Offler C, Clarke B, Rahman S, Furbank RT 2002 Three sucrose transporter genes are expressed in the developing grain of hexaploid wheat. Plant Mol. Biol. 50: 453-462.

Aranda A, del Olmo ML 2004 Exposure of Saccharomyces cerevisiae to acetaldehyde induces sulfur amino acid metabolism and polyamine transporter genes, which depend on Met4p and Haa1p transcription factors, respectively. Appl. Environ. Microbiol. 70: 1913-1922.

Ariizumi T, Hatakeyama K, Hinata K, Inatsugi R, Nishida I, Sato S, Kato T, Tabata S, Toriyama K 2004 Disruption of the novel plant protein NEF1 affects lipid accumulation in the plastids of the tapetum and exine formation of pollen, resulting in male sterility in Arabidopsis thaliana. Plant J. 39: 170-181.

Armengaud P, Breitling R, Amtmann A 2004 The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiol. 136: 2556-2576.

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Bauer BE, Rossington D, Mollapour M, Mamnun Y, Kuchler K, Piper PW 2003 Weak organic acid stress inhibits aromatic amino acid uptake by yeast, causing a strong influence of amino acid auxotrophies on the phenotypes of membrane transporter mutants. Eur. J. Biochem. 270: 3189-3195.

Bayer AS, Coulter SN, Stover CK, Schwan WR 1999 Impact of the high-affinity proline permease gene (putP) on the virulence of Staphylococcus aureus in experimental endocarditis. Infect. Immun. 67: 740-744.

Belitsky BR, Gustafsson MC, Sonenshein AL, Von Wachenfeldt C 1997 An lrp-like gene of Bacillus subtilis involved in branched-chain amino acid transport. J. Bacteriol. 179: 5448-5457.

Bentrup F-W, Hoffmann B 1992 Amino acid transport across the higher plant cell membrane. In "Nitrogen Metabolism of Plants" (K Mengel, DJ Pilbeam eds) Clarendon Press, Oxford, pp. 139-152.

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Bertl A, Anderson JA, Slayman CL, Sentenac H, Gaber RF 1994 Inward and outward rectifying potassium currents in Saccharomyces cerevisiae mediated by endogenous and heterelogously expressed ion channels. Folia Microbiol. (Praha) 39: 507-509.

Betteridge PR, Ayling PD 1976 The regulation of glutamine transport and glutamine synthetase in Salmonella typhimurium. J. Gen. Microbiol. 96: 324-334.

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Bhatia NP, Walsh KB, Baker AJ 2005 Detection and quantification of ligands involved in nickel detoxification in a herbaceous Ni hyperaccumulator Stackhousia tryonii Bailey. J. Exp. Bot. 56: 1343-1349.

Bhattacharya J, Singh AK, Rai AN 2002 Nitrogen nutrition in the cyanobacterium Nostoc ANTH, a symbiotic isolate from Anthoceros: Uptake and assimilation of inorganic-N and amino acids. Indian J. Biochem. Biophys. 39: 163-169.

Bick JA, Neelam A, Hall JL, Williams LE 1998 Amino acid carriers of Ricinus communis expressed during seedling development: molecular cloning and expression analysis of two putative amino acid transporters, RcAAP1 and RcAAP2. Plant Mol. Biol. 36: 377-385.

Bilang J, Sturm A 1995 Cloning and characterization of a glutathione S-transferase that can be photolabeled with 5-azido-indole-3-acetic acid. Plant Physiol. 109: 253-260.

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Bloss T, Clemens S, Nies DH 2002 Characterization of the ZAT1p zinc transporter from Arabidopsis thaliana in microbial model organisms and reconstituted proteoliposomes. Planta 214: 783-791.

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Bonza MC, Luoni L, De Michelis MI 2004 Functional expression in yeast of an N-deleted form of At-ACA8, a plasma membrane Ca(2+)-ATPase of Arabidopsis thaliana, and characterization of a hyperactive mutant. Planta 218: 814-823.

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Boorer KJ, Fischer WN 1997 Specificity and stoichiometry of the Arabidopsis H+ amino acid transporter AAP5. J. Biol. Chem. 272: 13040-13046.

Boorer KJ, Frommer WB, Bush DR, Kreman M, Loo DD, Wright EM 1996 Kinetics and specificity of a H+/amino acid transporter from Arabidopsis thaliana. J. Biol. Chem. 271: 2213-2220.

Boscari A, Mandon K, Dupont L, Poggi MC, Le Rudulier D 2002 BetS is a major glycine betaine/proline betaine transporter required for early osmotic adjustment in Sinorhizobium meliloti. J. Bacteriol. 184: 2654-2663.

Bourgis F, Roje S, Nuccio ML, Fisher DB, Tarczynski MC, Li C, Herschbach C, Rennenberg H, Pimenta MJ, Shen TL, Gage DA, Hanson AD 1999 S-Methylmethionine plays a major role in phloem sulfur transport and is synthesized by a novel type of methyltransferase. Plant Cell 11: 1485-1498.

Bouvier F, Linka N, Isner JC, Mutterer J, Weber AP, Camara B 2006 Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development. Plant Cell 18: 3088-3105.

Brechtel CE, Hu L, King SC 1996 Substrate specificity of the Escherichia coli 4-aminobutyrate carrier encoded by gabP. Uptake and counterflow of structurally diverse molecules. J. Biol. Chem. 271: 783-788.

Brechtel CE, King SC 1998 4-Aminobutyrate (GABA) transporters from the amine-polyamine-choline superfamily: substrate specificity and ligand recognition profile of the 4-aminobutyrate permease from Bacillus subtilis. Biochem. J. 333: 565-571.

Breitkreuz KE, Shelp BJ, Fischer WN, Schwacke R, Rentsch D 1999 Identification and characterization of GABA, proline and quaternary ammonium compound transporters from Arabidopsis thaliana. FEBS Lett. 450: 280-284.

Britto DT, Kronzucker HJ 2005 Nitrogen acquisition, PEP carboxylase, and cellular pH homeostasis: new views on old paradigms. Plant Cell Environ. 28: 1396-1409.

Bruggeman C, Denger K, Cook AM, Ruff J 2004 Enzymes and genes of taurine and isethionate dissimilation in Paracoccus denitrificans. Microbiology (U.K.) 150: 805-816.

Brugiere N, Dubois F, Limami AM, Lelandais M, Roux Y, Sangwan RS, Hirel B 1999 Glutamine synthetase in the phloem plays a major role in controlling proline production. Plant Cell 11: 1995-2012.

Brunker P, Altenbuchner J, Mattes R 1998 Structure and function of the genes involved in mannitol, arabitol and glucitol utilization from Pseudomonas fluorescens DSM50106. Gene 206: 117-126.

Burg MB 1997 Renal osmoregulatory transport of compatible organic osmolytes. Curr. Opin. Nephrol. Hypertens. 6: 430-433.

Burger-Kentischer A, Muller E, Marz J, Fraek ML, Thurau K, Beck FX 1999 Hypertonicity-induced accumulation of organic osmolytes in papillary interstitial cells. Kidney Int. 55: 1417-1425.

Burleigh SH, Kristensen BK, Bechmann IE 2003 A plasma membrane zinc transporter from Medicago truncatula is up-regulated in roots by Zn fertilization, yet down-regulated by arbuscular mycorrhizal colonization. Plant Mol. Biol. 52: 1077-1088.

Busov VB, Johannes E, Whetten RW, Sederoff RR, Spiker SL, Lanz-Garcia C, Goldfarb B 2004 An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein. Planta 218: 916-927.

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Castillo A, Taboada H, Mendoza A, Valderrama B, Encarnacion S, Mora J 2000 Role of GOGAT in carbon and nitrogen partitioning in Rhizobium etli. Microbiology 146: 1627-1637.

Cavicchioli R, Chiang RC, Kalman LV, Gunsalus RP 1996 Role of the periplasmic domain of the Escherichia coli NarX sensor-transmitter protein in nitrate-dependent signal transduction and gene regulation. Mol. Microbiol. 21: 901-911.

Ceccardi TL, Barthe GA, Derrick KS 1998 A novel protein associated with citrus blight has sequence similarities to expansin. Plant Mol. Biol. 38: 775-783.

Celenza JL 2001 Metabolism of tyrosine and tryptophan - new genes for old pathways. Curr. Opin. Plant Biol. 4: 234-240.

Cerezo M, Flors V V, Legaz F, Garcia-Agustin P 2000 Characterization of the low affinity transport system for NO(3)(-) uptake by Citrus roots. Plant Sci. 160: 95-104.

Chaffei C, Pageau K, Suzuki A, Gouia H, Ghorbel MH, Masclaux-Daubresse C 2004 Cadmium toxicity induced changes in nitrogen management in Lycopersicon esculentum leading to a metabolic safeguard through an amino acid storage strategy. Plant Cell Physiol. 45: 1681-1693.

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Chen L, Ortiz-Lopez A, Jung A, Bush DR 2001 ANT1, an aromatic and neutral amino acid transporter in Arabidopsis. Plant Physiol. 125: 1813-1820.

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