Purdue University Logo
Department of Horticulture and Landscape Architecture
 
Horticulture Home Page
Agriculture Home Page
Purdue Home Page
eCourses at Purdue
HORT640 Home Page
N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, C3

Abe K, Osakabe K, Nakayama S, Endo M, Tagiri A, Todoriki S, Ichikawa H, Toki S 2005 Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 139: 896-908.

Achard P, Lagrange T, El-Zanaty AF, Mache R 2003 Architecture and transcriptional activity of the initiator element of the TATA-less RPL21 gene. Plant J. 35: 743-752.

Acharya BR, Raina S, Maqbool SB, Jagadeeswaran G, Mosher SL, Appel HM, Schultz JC, Klessig DF, Raina R 2007 Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae. Plant J. 50: 488-499.

Adhikari U, Mateu CG, Chattopadhyay K, Pujol CA, Damonte EB, Ray B 2006 Structure and antiviral activity of sulfated fucans from Stoechospermum marginatum. Phytochemistry 67: 2474-2482.

Agarie S, Kai M, Takatsuji H, Ueno O 1997 Expression of C3 and C4 photosynthetic characteristics in the amphibious plant Eleocharis vivipara: structure and analysis of the expression of isogenes for pyruvate, orthophosphate dikinase. Plant Mol. Biol. 34: 363-369.

Aghajanian S, Engel PC 1998 Use of protein engineering to explore subunit interactions in an allosteric enzyme: construction of inter-subunit hybrids in Clostridium symbiosum glutamate dehydrogenase. Protein Eng. 11: 569-575.

Ainsworth EA, Rogers A 2007 The response of photosynthesis and stomatal conductance to rising [CO2]: mechanisms and environmental interactions. Plant Cell Environ. 30: 258-270.

Akad F, Teverovsky E, David A, Czosnek H, Gidoni D, Gera A, Loebenstein G 1999 A cDNA from tobacco codes for an inhibitor of virus replication (IVR)-like protein. Plant Mol. Biol. 40: 969-976.

Akhkha A, Reid I, Clarke DD, Dominy P 2001 Photosynthetic light response curves determined with the leaf oxygen electrode: minimisation of errors and significance of the convexity term. Planta 214: 135-141.

Al-Daoude A, de Torres Zabala M, Ko JH, Grant M 2005 RIN13 is a positive regulator of the plant disease resistance protein RPM1. Plant Cell 17: 1016-1028.

Albers D, Schaefer M, Scheu S 2006 Incorporation of plant carbon into the soil animal food web of an arable system. Ecology 87: 235-245.

Alfenito MR, Souer E, Goodman CD, Buell R, Mol J, Koes R, Walbot V 1998 Functional complementation of anthocyanin sequestration in the vacuole by widely divergent glutathione S-transferases. Plant Cell 10: 1135-1149.

Ali S, Taylor WC 2001 The 3' non-coding region of a C4 photosynthesis gene increases transgene expression when combined with heterologous promoters. Plant Mol. Biol. 46: 325-333.

Anterola AM, Lewis NG 2002 Trends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity. Phytochemistry 61: 221-294.

Aranjuelo I, Perez P, Hernandez L, Irigoyen JJ, Zita G, Martinez-Carrasco R, Sanchez-Diaz M 2005 The response of nodulated alfalfa to water supply, temperature and elevated CO2: photosynthetic downregulation. Physiol. Plant. 123: 348-358.

Araus JL, Slafer GA, Reynolds MP, Royo C 2002 Plant breeding and drought in C3 cereals: what should we breed for? Ann. Bot. (Lond.) 89: 925-940.

Arndt SK, Wanek W 2002 Use of decreasing foliar carbon isotope discrimination during water limitation as a carbon tracer to study whole plant carbon allocation. Plant Cell Environ. 25: 609-616.

Ashton AR, Trevanion SJ, Carr PD, Verger D, Ollis DL 2000 Structural basis for the light regulation of chloroplast NADP malate dehydrogenase. Physiol. Plant. 110: 314-321.

Atkin OK, Evans JR, Ball MC, Lambers H, Pons TL 2000 Leaf respiration of snow gum in the light and dark. Interactions between temperature and irradiance. Plant Physiol. 122: 915-924.

Bais HP, Fall R, Vivanco JM 2004 Biocontrol of Bacillus subtilis against infection of Arabidopsis roots by Pseudomonas syringae is facilitated by biofilm formation and surfactin production. Plant Physiol. 134: 307-319.

Bakrim N, Echevarria C, Cretin C, Arriodupont M, Pierre JN, Vidal J, Chollet R, Gadal P 1992 Regulatory phosphorylation of Sorghum leaf phosphenolpyruvate carboxylase. Identification of the protein-serine kinase and some elements of the signal-transduction cascade. Eur. J. Biochem. 204: 821-830.

Bakrim N, Prioul JL, Deleens E, Rocher JP, Arrio-Dupont M, Vidal J, Gadal P, Chollet R 1993 Regulatory phosphorylation of C4 phosphoenolpyruvate carboxylase. A cardinal event influencing the photosynthesis rate in sorghum and maize. Plant Physiol. 101: 891-897.

Balasubramanian S, Coggins JR, Abell C 1995 Observation of a secondary tritium isotope effect in the chorismate synthase reaction. Biochemistry 34: 341-348.

Bao X, Focke M, Pollard M, Ohlrogge J 2000 Understanding in vivo carbon precursor supply for fatty acid synthesis in leaf tissue. Plant J. 22: 39-50.

Barkla BJ, Vera-Estrella R, Maldonado-Gama M, Pantoja O 1999 Abscisic acid induction of vacuolar H+-ATPase activity in Mesembryanthemum crystallinum is developmentally regulated. Plant Physiol. 120: 811-820.

Barth I, Meyer S, Sauer N 2003 PmSUC3: characterization of a SUT2/SUC3-type sucrose transporter from Plantago major. Plant Cell 15: 1375-1385.

Basra AS, Dhawan AK, Goyal SS 2002 DCMU inhibits in vivo nitrate reduction in illuminated barley (C3) leaves but not in maize (C4): A new mechanism for the role of light? Planta 215: 855-861.

Bastos DZ, Pimentel IC, de Jesus DA, de Oliveira BH 2007 Biotransformation of betulinic and betulonic acids by fungi. Phytochemistry 68: 834-839.

Baunsgaard L, Lutken H, Mikkelsen R, Glaring MA, Pham TT, Blennow A 2005 A novel isoform of glucan, water dikinase phosphorylates pre-phosphorylated alpha-glucans and is involved in starch degradation in Arabidopsis. Plant J. 41: 595-605.

Bauwe H, Chu CC, Kopriva S, Nan Q 1995 Structure and expression analysis of the gdcsPA and gdcsPB genes encoding two P-isoproteins of the glycine-cleavage system from Flaveria pringlei. Eur. J. Biochem. 234: 116-124.

Bearne SL, Hekmat O, Macdonnell JE 2001 Inhibition of Escherichia coli CTP synthase by glutamate gamma-semialdehyde and the role of the allosteric effector GTP in glutamine hydrolysis. Biochem. J. 356: 223-232.

Bederman IR, Kasumov T, Reszko AE, David F, Brunengraber H, Kelleher JK 2004 In vitro modeling of fatty acid synthesis under conditions simulating the zonation of lipogenic [13C]acetyl-CoA enrichment in the liver. J. Biol. Chem. 279: 43217-43226.

Beerling DJ, Rundgren M 2000 Leaf metabolic and morphological responses of dwarf willow (Salix herbacea) in the sub-arctic to the past 9000 years of global environmental change. New Phytol. 145: 257-269.

Begna SH, Dwyer LM, Cloutier D, Assemat L, DiTommaso A, Zhou X, Prithiviraj B, Smith DL 2002 Decoupling of light intensity effects on the growth and development of C3 and C4 weed species through sucrose supplementation. J. Exp. Bot. 53: 1935-1940.

Bergantino E, Sandona D, Cugini D, Bassi R 1998 The photosystem II subunit CP29 can be phosphorylated in both C3 and C4 plants as suggested by sequence analysis. Plant Mol. Biol. 36: 11-22.

Berim A, Schneider B, Petersen M 2007 Methyl allyl ether formation in plants: novel S-adenosyl L-methionine:coniferyl alcohol 9-O-methyltransferase from suspension cultures of three Linum species. Plant Mol. Biol. 64: 279-291.

Bernacchi CJ, Morgan PB, Ort DR, Long SP 2005 The growth of soybean under free air [CO(2)] enrichment (FACE) stimulates photosynthesis while decreasing in vivo Rubisco capacity. Planta 220: 434-446.

Bernacchi CJ, Pimentel C, Long SP 2003 In vivo temperature response functions of parameters required to model RuBP-limited photosynthesis. Plant Cell Environ. 26: 1419-1430.

Bernacchi CJ, Portis AR, Nakano H, Von Caemmerer S, Long SP 2002 Temperature response of mesophyll conductance. Implications for the determination of Rubisco enzyme kinetics and for limitations to photosynthesis in vivo. Plant Physiol. 130: 1992-1998.

Bernacchi CJ, Singsaas EL, Pimentel C, Portis AR Jr, Long SP 2001 Improved temperature response functions for models of Rubisco-limited photosynthesis. Plant Cell Environ. 24: 253-259.

Berrocal-Lobo M, Molina A, Solano R 2002 Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. Plant J. 29: 23-32.

Beyel V, Bruggemann W 2005 Differential inhibition of photosynthesis during pre-flowering drought stress in Sorghum bicolor genotypes with different senescence traits. Physiol. Plant. 124: 249-259.

Biellmann JF, Eid P, Hirth C 1980 Affinity labeling of the Escherichia coli aspartate-beta-semialdehyde dehydrogenase with an alkylating coenzyme analogue. Half-site reactivity and competition with the substrate alkylating analogue. Eur. J. Biochem. 104: 65-69.

Bird IF, Cornelius MJ, Keys AJ, Whittingham CP 1978 Intramolecular labelling of sucrose made by leaves from [14C)carbon dioxide or [3-14C]serine. Biochem. J. 172: 23-27.

Black DS, Edwards GL, Evans RH, Keller PA, Laaman SM 2000 Synthesis and reactivity of 1-pyrroline-5-carboxylate ester 1-oxides. Tetrahedron 56: 1889-1897.

Blasing OE, Ernst K, Streubel M, Westhoff P, Svensson P 2002 The non-photosynthetic phosphoenolpyruvate carboxylases of the C4 dicot Flaveria trinervia - implications for the evolution of C4 photosynthesis. Planta 215: 448-456.

Bleuyard JY, Gallego ME, Savigny F, White CI 2005 Differing requirements for the Arabidopsis Rad51 paralogs in meiosis and DNA repair. Plant J. 41: 533-545.

Blunden G, Gordon SM, Crabb TA, Roch OG, Rowan MG, Wood B 1986 NMR spectra of betaines from marine algae. Mag. Res. Chem. 24: 965-971.

Boddu J, Jiang C, Sangar V, Olson T, Peterson T, Chopra S 2006 Comparative structural and functional characterization of sorghum and maize duplications containing orthologous myb transcription regulators of 3-deoxyflavonoid biosynthesis. Plant Mol. Biol. 60: 185-199.

Boldt R, Edner C, Kolukisaoglu U, Hagemann M, Weckwerth W, Wienkoop S, Morgenthal K, Bauwe H 2005 D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17: 2413-2420.

Borland AM, Griffiths H, Broadmeadow M, Fordham MC, Maxwell C 1994 Carbon-isotope composition of biochemical fractions and the regulation of carbon balance in leaves of the C3-Crassulacean acid metabolism intermediate Clusia minor L. growing in Trinidad. Plant Physiol. 106: 493-501.

Borland AM, Taybi T 2004 Synchronization of metabolic processes in plants with Crassulacean acid metabolism. J. Exp. Bot. 55: 1255-1265.

Borland AM, Tecsi LI, Leegood RC, Walker RP 1998 Inducibility of Crassulacean acid metabolism (CAM) in Clusia species; physiological/biochemical characterisation and intercellular localization of carboxylation and decarboxylation processes in three species which exhibit different degrees of CAM. Planta 205: 342-351.

Boxall SF, Foster JM, Bohnert HJ, Cushman JC, Nimmo HG, Hartwell J 2005 Conservation and divergence of circadian clock operation in a stress-inducible Crassulacean acid metabolism species reveals clock compensation against stress. Plant Physiol. 137: 969-982.

Bracher A, Eisenreich W, Schramek N, Ritz H, Gotze E, Herrmann A, Gutlich M, Bacher A 1998 Biosynthesis of pteridines. NMR studies on the reaction mechanisms of GTP cyclohydrolase I, pyruvoyltetrahydropterin synthase, and sepiapterin reductase. J. Biol. Chem. 273: 28132-28141.

Brar DS, Khush GS 1997 Alien introgression in rice. Plant Mol. Biol. 35: 35-47.

Brembu T, Winge P, Seem M, Bones AM 2004 NAPP and PIRP encode subunits of a putative wave regulatory protein complex involved in plant cell morphogenesis. Plant Cell 16: 2335-2349.

Brown NJ, Parsley K, Hibberd JM 2005 The future of C4 research--maize, Flaveria or Cleome? Trends Plant Sci. 10: 215-221.

Brown RH, Byrd GT, Bouton JH, Bassett CL 1993 Photosynthetic characteristics of segregates from hybrids between Flaveria brownii (C4 like) and Flaveria linearis (C3-C4). Plant Physiol. 101: 825-831.

Buckley TN, Mott KA, Farquhar GD 2003 A hydromechanical and biochemical model of stomatal conductance. Plant Cell Environ. 26: 1767-1785.

Burgess SC, Weis B, Jones JG, Smith E, Merritt ME, Margolis D, Dean Sherry A, Malloy CR 2003 Noninvasive evaluation of liver metabolism by 2H and 13C NMR isotopomer analysis of human urine. Anal. Biochem. 312: 228-234.

Burke MA, Ardehali H 2007 Mitochondrial ATP-binding cassette proteins. Transl. Res. 150: 73-80.

Cai XZ, Xu QF, Wang CC, Zheng Z 2006 Development of a virus-induced gene-silencing system for functional analysis of the RPS2-dependent resistance signalling pathways in Arabidopsis. Plant Mol. Biol. 62: 223-232.

Calatayud PA, Baron CH, Velasquez H, Arroyave JA, Lamaze T 2002 Wild Manihot species do not possess C4 photosynthesis. Ann. Bot. (Lond.) 89: 125-127.

Callard D, Axelos M, Mazzolini L 1996 Novel molecular markers for late phases of the growth cycle of Arabidopsis thaliana cell-suspension cultures are expressed during organ senescence. Plant Physiol. 112: 705-715.

Campbell WH, Black CC 1978 The relationship of CO2 assimilation pathways and photorespiration to the physiological quantum requirement of green plant photosynthesis. Biosystems 10: 253-264.

Cardoso-Vilhena J, Balaguer L, Eamus D, Ollerenshaw J, Barnes J 2004 Mechanisms underlying the amelioration of O3-induced damage by elevated atmospheric concentrations of CO2. J. Exp. Bot. 55: 771-781.

Carter CJ, Thornburg RW 2004 Tobacco Nectarin III is a bifunctional enzyme with monodehydroascorbate reductase and carbonic anhydrase activities. Plant Mol. Biol. 54: 415-425.

Cartieaux F, Thibaud MC, Zimmerli L, Lessard P, Sarrobert C, David P, Gerbaud A, Robaglia C, Somerville S, Nussaume L 2003 Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. Plant J. 36: 177-188.

Casati P, Lara MV, Andreo CS 2000 Induction of a C(4)-like mechanism of CO(2) fixation in Egeria densa, a submersed aquatic species. Plant Physiol. 123: 1611-1622.

Ceci LR, Volpicella M, Rahbe Y, Gallerani R, Beekwilder J, Jongsma MA 2003 Selection by phage display of a variant mustard trypsin inhibitor toxic against aphids. Plant J. 33: 557-566.

Centritto M, Loreto F, Chartzoulakis K 2003 The use of low [CO2] to estimate diffusional and non-diffusional limitations of photosynthetic capacity of salt-stressed olive saplings. Plant Cell Environ. 26: 585-594.

Chak RK, Thomas TL, Quatrano RS, Rock CD 2000 The genes ABI1 and ABI2 are involved in abscisic acid- and drought-inducible expression of the Daucus carota L. Dc3 promoter in guard cells of transgenic Arabidopsis thaliana (L.) Heynh. Planta 210: 875-883.

Chassaigne H, Vacchina V, Kutchan TM, Zenk MH 2001 Identification of phytochelatin-related peptides in maize seedlings exposed to cadmium and obtained enzymatically in vitro. Phytochemistry 56: 657-668.

Chastain CJ, Fries JP, Vogel JA, Randklev CL, Vossen AP, Dittmer SK, Watkins EE, Fiedler LJ, Wacker SA, Meinhover KC, Sarath G, Chollet R 2002 Pyruvate, orthophosphate dikinase in leaves and chloroplasts of C3 plants undergoes light-/dark-induced reversible phosphorylation. Plant Physiol. 128: 1368-1378.

Chastain CJ, Heck JW, Colquhoun TA, Voge DG, Gu XY 2006 Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds. Planta 224: 924-934.

Cheeseman JM, Lovelock CE 2004 Photosynthetic characteristics of dwarf and fringe Rhizophora mangle L. in a Belizean mangrove. Plant Cell Environ. 27: 769-780.

Chellappan P, Vanitharani R, Ogbe F, Fauquet CM 2005 Effect of temperature on geminivirus-induced RNA silencing in plants. Plant Physiol. 138: 1828-1841.

Chen A, Komives EA, Schroeder JI 2006 An improved grafting technique for mature Arabidopsis plants demonstrates long-distance shoot-to-root transport of phytochelatins in Arabidopsis. Plant Physiol. 141: 108-120.

Chen C, Beattie GA 2007 Characterization of the osmoprotectant transporter OpuC from Pseudomonas syringae and demonstration that CBS domains are required for its osmoregulatory function. J. Bacteriol. 189: 6901-6912.

Chen DX, Coughenour MB, Knapp AK, Owensby CE 1994 Mathematical simulation of C4 grass photosynthesis in ambient and elevated CO2. Ecological Modelling 73: 63-80.

Chen K, Chen X, Schnell DJ 2000 Initial binding of preproteins involving the Toc159 receptor can be bypassed during protein import into chloroplasts. Plant Physiol. 122: 813-822.

Chen M, Ni M 2006 RED AND FAR-RED INSENSITIVE 2, a RING-domain zinc finger protein, mediates phytochrome-controlled seedling de-etiolation responses. Plant Physiol. 140: 457-465.

Chen Z, Kloek AP, Cuzick A, Moeder W, Tang D, Innes RW, Klessig DF, McDowell JM, Kunkel BN 2004 The Pseudomonas syringae type III effector AvrRpt2 functions downstream or independently of SA to promote virulence on Arabidopsis thaliana. Plant J. 37: 494-504.

Chhina N, Kuestermann E, Halliday J, Simpson LJ, Macdonald IA, Bachelard HS, Morris PG 2001 Measurement of human tricarboxylic acid cycle rates during visual activation by 13C magnetic resonance spectroscopy. J. Neurosci. Res. 66: 737-746.

Chia DW, Yoder TJ, Reiter WD, Gibson SI 2000 Fumaric acid: an overlooked form of fixed carbon in Arabidopsis and other plant species. Planta 211: 743-751.

Chigri F, Soll J, Vothknecht UC 2005 Calcium regulation of chloroplast protein import. Plant J. 42: 821-831.

Chikaraishi Y, Naraoka H 2003 Compound-specific deltaD-delta13C analyses of n-alkanes extracted from terrestrial and aquatic plants. Phytochemistry 63: 361-371.

Chikaraishi Y, Naraoka H, Poulson SR 2004 Hydrogen and carbon isotopic fractionations of lipid biosynthesis among terrestrial (C3, C4 and CAM) and aquatic plants. Phytochemistry 65: 1369-1381.

Chinthapalli B, Murmu J, Raghavendra AS 2003 Dramatic difference in the responses of phosphoenolpyruvate carboxylase to temperature in leaves of C3 and C4 plants. J. Exp. Bot. 54: 707-714.

Chong J, Howes NK, Brown PD, Harder DE 1994 Identification of the stem rust resistance gene Pg9 and its association with crown rust resistance and endosperm proteins in 'Dumont' oat. Genome 37: 440-447.

Christensen B, Nielsen J 1999 Isotopomer analysis using GC-MS. Metab. Eng. 1: 282-290.

Chung HJ, Fu HY, Thomas TL 2005 Abscisic acid-inducible nuclear proteins bind to bipartite promoter elements required for ABA response and embryo-regulated expression of the carrot Dc3 gene. Planta 220: 424-433.

Coego A, Ramirez V, Gil MJ, Flors V, Mauch-Mani B, Vera P 2005 An Arabidopsis homeodomain transcription factor, OVEREXPRESSOR OF CATIONIC PEROXIDASE 3, mediates resistance to infection by necrotrophic pathogens. Plant Cell 17: 2123-2137.

Cohn JR, Martin GB 2005 Pseudomonas syringae pv. tomato type III effectors AvrPto and AvrPtoB promote ethylene-dependent cell death in tomato. Plant J. 44: 139-154.

Condon AG, Richards RA, Rebetzke GJ, Farquhar GD 2004 Breeding for high water-use efficiency. J. Exp. Bot. 55: 2447-2460.

Constan D, Patel R, Keegstra K, Jarvis P 2004 An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis. Plant J. 38: 93-106.

Coppinger P, Repetti PP, Day B, Dahlbeck D, Mehlert A, Staskawicz BJ 2004 Overexpression of the plasma membrane-localized NDR1 protein results in enhanced bacterial disease resistance in Arabidopsis thaliana. Plant J. 40: 225-237.

Cordoba E, Shishkova S, Vance CP, Hernandez G 2003 Antisense inhibition of NADH glutamate synthase impairs carbon/nitrogen assimilation in nodules of alfalfa (Medicago sativa L.). Plant J. 33: 1037-1049.

Cornic G, Fresneau C 2002 Photosynthetic carbon reduction and carbon oxidation cycles are the main electron sinks for photosystem II activity during a mild drought. Ann. Bot. (Lond.) 89: 887-894.

Cousins AB, Adam NR, Wall GW, Kimball BA, Pinter PJ Jr, Ottman MJ, Leavitt SW, Webber AN 2003 Development of C4 photosynthesis in sorghum leaves grown under free-air CO2 enrichment (FACE). J. Exp. Bot. 54: 1969-1975.

Cousins AB, Bloom AJ 2003 Influence of elevated CO2 and nitrogen nutrition on photosynthesis and nitrate photo-assimilation in maize (Zea mays L.). Plant Cell Environ. 26: 1525-1530.

Cousins AB, Bloom AJ 2004 Oxygen consumption during leaf nitrate assimilation in a C-3 and C-4 plant: the role of mitochondrial respiration. Plant Cell Environ. 27: 1537-1545.

Cowling RJ, Kamiya Y, Seto H, Harberd NP 1998 Gibberellin dose-response regulation of GA4 gene transcript levels in Arabidopsis. Plant Physiol. 117: 1195-1203.

Culham DE, Hillar A, Henderson J, Ly A, Vernikovska YI, Racher KI, Boggs JM, Wood JM 2003 Creation of a fully functional cysteine-less variant of osmosensor and proton-osmoprotectant symporter ProP from Escherichia coli and its application to assess the transporter's membrane orientation. Biochemistry 42: 11815-11823.

Cunnac S, Wilson A, Nuwer J, Kirik A, Baranage G, Mudgett MB 2007 A conserved carboxylesterase is a SUPPRESSOR OF AVRBST-ELICITED RESISTANCE in Arabidopsis. Plant Cell 19: 688-705.

Curtis PS, Drake BG, Whigham DF 1989 Nitrogen and carbon dynamics in C3 and C4 estuarine marsh plants grown under elevated CO2 in situ. Oecologia 78: 297-301.

Cushman JC, Borland AM 2002 Induction of Crassulacean acid metabolism by water limitation. Plant Cell Environ. 25: 295-310.

Dai Z, Ku M, Edwards GE 1993 C4 photosynthesis. The CO2-concentrating mechanism and photorespiration. Plant Physiol. 103: 83-90.

Das S, Ghosh S, Pan A, Dutta C 2005 Compositional variation in bacterial genes and proteins with potential expression level. FEBS Lett. 579: 5205-5210.

Davies JP, Yildiz FH, Grossman AR 1999 Sac3, an Snf1-like serine/threonine kinase that positively and negatively regulates the responses of Chlamydomonas to sulfur limitation. Plant Cell 11: 1179-1190.

Davis EM, Ringer KL, McConkey ME, Croteau R 2005 Monoterpene metabolism. Cloning, expression, and characterization of menthone reductases from peppermint. Plant Physiol. 137: 873-881.

Day B, Dahlbeck D, Staskawicz BJ 2006 NDR1 interaction with RIN4 mediates the differential activation of multiple disease resistance pathways in Arabidopsis. Plant Cell 18: 2782-2791.

Day DA, Hatch MD 1981 Transport of 3-phosphoglyceric acid, phosphoenolpyruvate, and inorganic-phosphate in maize mesophyll chloroplasts, and the effect of 3-phosphoglyceric acid on malate and phosphoenolpyruvate production. Arch. Biochem. Biophys. 211: 743-749.

de Souza Filho GA, da Silva MJ, Vettore AL, Yunes JA, Leite A, Arruda P, Ottoboni LM 1999 Identification of a DNA-binding factor that recognizes an alpha-coixin promoter and interacts with a Coix Opaque-2 like protein. Plant Mol. Biol. 39: 95-104.

de Torres M, Mansfield JW, Grabov N, Brown IR, Ammouneh H, Tsiamis G, Forsyth A, Robatzek S, Grant M, Boch J 2006 Pseudomonas syringae effector AvrPtoB suppresses basal defence in Arabidopsis. Plant J. 47: 368-382.

Dean Rider S Jr, Henderson JT, Jerome RE, Edenberg HJ, Romero-Severson J, Ogas J 2003 Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis. Plant J. 35: 33-43.

Deane SM, Rawlings DE 1996 Cloning and sequencing of the gene for the Thiobacillus ferrooxidans ATCC33020 glutamate synthase (GOGAT) small subunit and complementation of an Escherichia coli gltD mutant. Gene 177: 261-263.

Deborde C, Rolin DB, Boyaval P 1999 In vivo 13C NMR study of the bidirectional reactions of the Wood-Werkman cycle and around the pyruvate node in Propionibacterium freudenreichii subsp. shermanii and Propionibacterium acidipropionici. Metab. Eng. 1: 309-319.

Denton TM, Schmidt S, Critchley C, Stewart GR 2001 Natural abundance of stable carbon and nitrogen isotopes in Cannabis sativa reflects growth conditions. Aust. J. Plant Physiol. 28: 1005-1012.

Des Rosiers C, Di Donato L, Comte B, Laplante A, Marcoux C, David F, Fernandez CA, Brunengraber H 1995 Isotopomer analysis of citric acid cycle and gluconeogenesis in rat liver. Reversibility of isocitrate dehydrogenase and involvement of ATP-citrate lyase in gluconeogenesis. J. Biol. Chem. 270: 10027-10036.

Devi MT, Raghavendra AS 1992 Light activation of phosphoenolpyruvate carboxylase in maize mesophyll protoplasts. J. Plant Physiol. 139: 431-435.

Devi MT, Raghavendra AS 1994 Formation of photorespiratory glycolate and glyoxylate in leaf disks of C3-C4 intermediates: reduced sensitivity to external bicarbonate. Photosynthetica 30: 455-463.

Devi MT, Raghavendra AS 1993 Photorespiration in C3-C4, intermediate species of Alternanthera and Parthenium: reduced ammonia production and increased capacity CO2 refixation in the light. Photosynth. Res. 38: 177-184.

Devi MT, Raghavendra AS 1993 Partial reduction in activities of photorespiratory enzymes in C3-C4 intermediates of Alternanthera and Parthenium. J. Exp. Bot. 44: 779-784.

Devi MT, Rajagopalan AV, Raghavendra AS 1995 Predominant localization of mitochondria enriched with glycine decarboxylating enzymes in bundle-sheath cells of Alternanthera tenella, a C3-C4 intermediate species. Plant Cell Environ. 18: 589-594.

Devi MT, Rajagopalan AV, Raghavendra AS 1996 Purification and properties of glycolate oxidase from plants with different photosynthetic pathways: Distinctness of C-4 enzyme from that of a C-3 species and a C-3-C-4 intermediate. Photosynth. Res. 47: 231-238.

Dhar P, Wang E, Nakayama Y, Tomita M 2001 Modeling photorespiration pathway through E-Cell. Genome Informatics 12: 306-307.

Dijkema C, Kester HC, Visser J 1985 13C NMR studies of carbon metabolism in the hyphal fungus Aspergillus nidulans. Proc. Natl. Acad. Sci. U.S.A. 82: 14-18.

Dodd AN, Griffiths H, Taybi T, Cushman JC, Borland AM 2003 Integrating diel starch metabolism with the circadian and environmental regulation of Crassulacean acid metabolism in Mesembryanthemum crystallinum. Planta 216: 789-797.

Douce R, Neuburger M 1999 Biochemical dissection of photorespiration. Curr. Opin. Plant Biol. 2: 214-222.

Drennan PM, Nobel PS 2000 Responses of CAM species to increasing atmospheric CO2 concentrations. Plant Cell Environ. 23: 767-781.

Drincovich MF, Casati P, Andreo CS, Chessin SJ, Franceschi VR, Edwards GE, Ku MS 1998 Evolution of C4 photosynthesis in Flaveria species. Isoforms of NADP-malic enzyme. Plant Physiol. 117: 733-744.

Drouet JL, Bonhomme R 2004 Effect of 3D nitrogen, dry mass per area and local irradiance on canopy photosynthesis within leaves of contrasted heterogeneous maize crops. Ann. Bot. (Lond.) 93: 699-710.

Duran-Patron R, O'Hagan D, Hamilton JTG, Wong CW 2000 Biosynthetic studies on the tropane ring system of the tropane alkaloids from Datura stramonium. Phytochemistry 53: 777-784.

Duranceau M, Ghashghaie J, Brugnoli E 2001 Carbon isotope discrimination during photosynthesis and dark respiration in intact leaves of Nicotiana sylvestris: comparisons between wild type and mitochondrial mutant plants. Aust. J. Plant Physiol. 28: 65-71.

Eckardt NA 2003 The function of SUT2/SUC3 sucrose transporters: the debate continues. Plant Cell 15: 1259-1262.

Eckardt NA 2005 Photorespiration revisited. Plant Cell 17: 2139-2141.

Edwards EJ, Diaz M 2006 Ecological physiology of Pereskia guamacho, a cactus with leaves. Plant Cell Environ. 29: 247-256.

El-Din El-Assal S, Le J, Basu D, Mallery EL, Szymanski DB 2004 DISTORTED2 encodes an ARPC2 subunit of the putative Arabidopsis ARP2/3 complex. Plant J. 38: 526-538.

El-Ghaysh A, Barrett J 1999 Isoenzyme activities of different strains of Cryptosporidium parvum. Vet. Parasitol. 81: 195-200.

El-Sharkawy MA 2004 Cassava biology and physiology. Plant Mol. Biol. 56: 481-501.

EL-Sharkawy MA 2003 Cassava biology and physiology. Plant Mol. Biol. 53: 621-641.

Engelmann S, Blasing OE, Gowik U, Svensson P, Westhoff P 2003 Molecular evolution of C4 phosphoenolpyruvate carboxylase in the genus Flaveria: a gradual increase from C3 to C4 characteristics. Planta 217: 717-725.

Engelmann S, Blasing OE, Westhoff P, Svensson P 2002 Serine 774 and amino acids 296 to 437 comprise the major C4 determinants of the C4 phosphoenolpyruvate carboxylase of Flaveria trinervia. FEBS Lett. 524: 11-14.

Ernest NJ, Weaver AK, Van Duyn LB, Sontheimer HW 2005 Relative contribution of chloride channels and transporters to regulatory volume decrease in human glioma cells. Am. J. Physiol. Cell. Physiol. 288: C1451-C1460.

Ernst K, Westhoff P 1997 The phosphoenolpyruvate carboxylase (ppc) gene family of Flaveria trinervia (C4) and F. pringlei (C3): molecular characterization and expression analysis of the ppcB and ppcC genes. Plant Mol. Biol. 34: 427-443.

Ethier GJ, Livingston NJ 2004 On the need to incorporate sensitivity to CO2 transfer conductance into the Farquhar-von Caemmerer-Berry leaf photosynthesis model. Plant Cell Environ. 27: 137-153.

Ewing RM, Jenkins GI, Langdale JA 1998 Transcripts of maize RbcS genes accumulate differentially in C3 and C4 tissues. Plant Mol. Biol. 36: 593-599.

Facchini PJ, De Luca V 1994 Differential and tissue-specific expression of a gene family for tyrosine/dopa decarboxylase in opium poppy. J. Biol. Chem. 269: 26684-26690.

Facchini PJ, Penzes-Yost C, Samanani N, Kowalchuk B 1998 Expression patterns conferred by tyrosine/dihydroxyphenylalanine decarboxylase promoters from opium poppy are conserved in transgenic tobacco. Plant Physiol. 118: 69-81.

Farquhar GD, von Caemmerer S, Berry JA 2001 Models of photosynthesis. Plant Physiol. 125: 42-45.

Fei H, Chaillou S, Hirel B, Mahon JD, Vessey JK 2003 Overexpression of a soybean cytosolic glutamine synthetase gene linked to organ-specific promoters in pea plants grown in different concentrations of nitrate. Planta 216: 467-474.

Fei H, Chaillou S, Hirel B, Polowick P, Mahon JD, Vessey JK 2006 Effects of the overexpression of a soybean cytosolic glutamine synthetase gene (GS15) linked to organ-specific promoters on growth and nitrogen accumulation of pea plants supplied with ammonium. Plant Physiol. Biochem. 44: 543-550.

Fellbrich G, Romanski A, Varet A, Blume B, Brunner F, Engelhardt S, Felix G, Kemmerling B, Krzymowska M, Nurnberger T 2002 NPP1, a Phytophthora-associated trigger of plant defense in parsley and Arabidopsis. Plant J. 32: 375-390.

Fernandez CA, Des Rosiers C 1995 Modeling of liver citric acid cycle and gluconeogenesis based on 13C mass isotopomer distribution analysis of intermediates. J. Biol. Chem. 270: 10037-10042.

Fernandez-Murray JP, McMaster CR 2006 Identification of novel phospholipid binding proteins in Saccharomyces cerevisiae. FEBS Lett. 580: 82-86.

Fisslthaler B, Meyer G, Bohnert HJ, Schmitt JM 1995 Age-dependent induction of pyruvate, orthophosphate dikinase in Mesembryanthemum crystallinum L. Planta 196: 492-500.

Fitzgerald C, Swearengin TA, Yeargans G, McWhorter D, Cucchetti B, Seidler NW 2000 Non-enzymatic glycosylation (or glycation) and inhibition of the pig heart cytosolic aspartate aminotransferase by glyceraldehyde 3-phosphate. J. Enzyme Inhib. 15: 79-89.

Flexas J, Bota J, Loreto F, Cornic G, Sharkey TD 2004 Diffusive and metabolic limitations to photosynthesis under drought and salinity in C(3) plants. Plant Biol. (Stuttg.) 6: 269-279.

Flexas J, Medrano H 2002 Drought-inhibition of photosynthesis in C3 plants: stomatal and non-stomatal limitations revisited. Ann. Bot. (Lond.) 89: 183-189.

Forde BG, Freeman J, Oliver JE, Pineda M 1990 Nuclear factors interact with conserved A/T-rich elements upstream of a nodule-enhanced glutamine synthetase gene from French bean. Plant Cell 2: 925-939.

Francesconi KA, Gailer J, Edmonds JS, Goessler W, Irgolic KJ 1999 Uptake of arsenic-betaines by the mussel Mytilus edulis. Comp. Biochem. Physiol. [C] 122: 131-137.

Franke R, Hemm MR, Denault JW, Ruegger MO, Humphreys JM, Chapple C 2002 Changes in secondary metabolism and deposition of an unusual lignin in the ref8 mutant of Arabidopsis. Plant J. 30: 47-59.

Franke R, Humphreys JM, Hemm MR, Denault JW, Ruegger MO, Cusumano JC, Chapple C 2002 The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism. Plant J. 30: 33-45.

Fraser PD, Pinto ME, Holloway DE, Bramley PM 2000 Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J. 24: 551-558.

Fridlyand LE, Backhausen JE, Scheibe R 1999 Homeostatic regulation upon changes of enzyme activities in the Calvin cycle as an example for general mechanisms of flux control. What can we expect from transgenic plants? Photosynth. Res. 61: 227-239.

Fridlyand LE, Scheibe R 1999 Regulation of the Calvin cycle for CO2 fixation as an example for general control mechanisms in metabolic cycles. Biosystems 51: 79-93.

Fuerst RA, Soni R, Murray JA, Lindsey K 1996 Modulation of cyclin transcript levels in cultured cells of Arabidopsis thaliana. Plant Physiol. 112: 1023-1033.

Fujii T, Mukaihara M, Agematu H, Tsunekawa H 2002 Biotransformation of L-lysine to L-pipecolic acid catalyzed by L-lysine 6-aminotransferase and pyrroline-5-carboxylate reductase. Biosci. Biotechnol. Biochem. 66: 622-627.

Fukayama H, Tsuchida H, Agarie S, Nomura M, Onodera H, Ono K, Lee BH, Hirose S, Toki S, Ku MS, Makino A, Matsuoka M, Miyao M 2001 Significant accumulation of C4-specific pyruvate, orthophosphate dikinase in a C3 plant, rice. Plant Physiol. 127: 1136-1146.

Furbank RT, Taylor WC 1995 Regulation of photosynthesis in C3 and C4 plants: a molecular approach. Plant Cell 7: 797-807.

Furukawa T, Ishibashi T, Kimura S, Tanaka H, Hashimoto J, Sakaguchi K 2003 Characterization of all the subunits of replication factor C from a higher plant, rice (Oryza sativa L.), and their relation to development. Plant Mol. Biol. 53: 15-25.

Gallardo F, Miginiac-Maslow M, Sangwan RS, Decottignies P, Keryer E, Dubois F, Bismuth E, Galvez S, Sangwan-Norreel B, Gadal P, et al 1995 Monocotyledonous C4 NADP(+)-malate dehydrogenase is efficiently synthesized, targeted to chloroplasts and processed to an active form in transgenic plants of the C3 dicotyledon tobacco. Planta 197: 324-332.

Galmes J, Flexas J, Keys AJ, Cifre J, Mitchell RAC, Madgwick PJ, Haslam RP, Medrano H, Parry MAJ 2005 Rubisco specificity factor tends to be larger in plant species from drier habitats and in species with persistent leaves. Plant Cell Environ. 28: 571-579.

Gastal F, Lemaire G 2002 N uptake and distribution in crops: an agronomical and ecophysiological perspective. J. Exp. Bot. 53: 789-799.

Gebbing T, Schnyder H 2001 C13 labeling kinetics of sucrose in glumes indicates significant refixation of respiratory CO2 in the wheat ear. Aust. J. Plant Physiol. 28: 1047-1053.

Gehrig H, Faist K, Kluge M 1998 Identification of phosphoenolpyruvate carboxylase isoforms in leaf, stem and roots of the obligate CAM plant Vanilla planifolia Salib. (Orchidaceae): a physiological and molecular approach. Plant Mol. Biol. 38: 1215-1223.

Ghannoum O, Siebke K, von Caemmerer S, Conroy JP 1998 The photosynthesis of young Panicum C-4 leaves is not C-3-like. Plant Cell Environ. 21: 1123-1131.

Ghannoum O, von Caemmerer S, Conroy JP 2001 Plant water use efficiency of 17 Australian NAD-ME and NADP-ME C4 grasses at ambient and elevated CO2 partial pressure. Aust. J. Plant Physiol. 28: 1207-1217.

Ghannoum O, von Caemmerer S, Ziska LH, Conroy JP 2000 The growth response of C4 plants to rising atmospheric CO2 partial pressure: a reassessment. Plant Cell Environ. 23: 931-942.

Ghashghaie J, Duranceau M, Badeck FW, Cornic G, Adeline MT, Deleens E 2001 d13C of CO2 respired in the dark in relation to d13C of leaf metabolites: comparison between Nicotiana sylvestris and Helianthus annuus under drought. Plant Cell Environ. 24: 505-515.

Gillon JS, Yakir D 2000 Naturally low carbonic anhydrase activity in C4 and C3 plants limits discrimination against C18OO during photosynthesis. Plant Cell Environ. 23: 903-915.

Gillon JS, Yakir D 2000 Internal conductance to CO(2) diffusion and C(18)O2 discrimination in C(3) leaves. Plant Physiol. 123: 201-214.

Giordano M, Pezzoni V, Hell R 2000 Strategies for the allocation of resources under sulfur limitation in the green alga Dunaliella salina. Plant Physiol. 124: 857-864.

Glawischnig E, Gierl A, Tomas A, Bacher A, Eisenreich W 2002 Starch biosynthesis and intermediary metabolism in maize kernels. Quantitative analysis of metabolite flux by nuclear magnetic resonance. Plant Physiol. 130: 1717-1727.

Gobert A, Park G, Amtmann A, Sanders D, Maathuis FJ 2006 Arabidopsis thaliana cyclic nucleotide gated channel 3 forms a non-selective ion transporter involved in germination and cation transport. J. Exp. Bot. 57: 791-800.

Gonzalez MC, Sanchez R, Cejudo FJ 2003 Abiotic stresses affecting water balance induce phosphoenolpyruvate carboxylase expression in roots of wheat seedlings. Planta 216: 985-992.

Gonzalez-Moro B, Mena-Petite A, Lacuesta M, Gonzalez-Murua C, Munoz-Rueda A 2000 Glutamine synthetase from mesophyll and bundle sheath maize cells: isoenzyme complements and different sensitivities to phosphinothricin. Plant Cell Rep. 19: 1127-1134.

Gorpenchenko TY, Kiselev KV, Bulgakov VP, Tchernoded GK, Bragina EA, Khodakovskaya MV, Koren OG, Batygina TB, Zhuravlev YN 2006 The Agrobacterium rhizogenes rolC-gene-induced somatic embryogenesis and shoot organogenesis in Panax ginseng transformed calluses. Planta 223: 457-467.

Gousset-Dupont A, Lebouteiller B, Monreal J, Echevarria C, Pierre JN, Hodges M, Vidal J 2005 Metabolite and post-translational control of phosphoenolpyruvate carboxylase from leaves and mesophyll cell protoplasts of Arabidopsis thaliana. Plant Sci. 169: 1096-1101.

Gowik U, Burscheidt J, Akyildiz M, Schlue U, Koczor M, Streubel M, Westhoff P 2004 cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene. Plant Cell 16: 1077-1090.

Gowik U, Engelmann S, Blasing OE, Raghavendra AS, Westhoff P 2006 Evolution of C4 phosphoenolpyruvate carboxylase in the genus Alternanthera: gene families and the enzymatic characteristics of the C(4) isozyme and its orthologues in C(3) and C(3)/C(4) Alternantheras. Planta 223: 359-368.

Goyal A, Wang XG, Engel PC 2001 Allosteric behaviour of 1 : 5 hybrids of mutant subunits of Clostridium symbiosum glutamate dehydrogenase differing in their amino acid specificity. Biochem. J. 360: 651-656.

Grams TE, Thiel S 2002 High light-induced switch from C3-photosynthesis to Crassulacean acid metabolism is mediated by UV-A/blue light. J. Exp. Bot. 53: 1475-1483.

Grassi G, Magnani F 2005 Stomatal, mesophyll conductance and biochemical limitations to photosynthesis as affected by drought and leaf ontogeny in ash and oak trees. Plant Cell Environ. 28: 834-849.

Grassi G, Meir P, Cromer R, Tompkins D, Jarvis PG 2002 Photosynthetic parameters in seedlings of Eucalyptus grandis as affected by rate of nitrogen supply. Plant Cell Environ. 25: 1677-1688.

Grodzinski B, Jiao J, Leonardos ED 1998 Estimating photosynthesis and concurrent export rates in C3 and C4 species at ambient and elevated CO2. Plant Physiol. 117: 207-215.

Gross LJ, Kirschbaum MUF, Pearcy RW 1991 A dynamic model of photosynthesis in varying light taking account of stomatal conductance, C3-cycle intermediates, photorespiration and Rubisco activation. Plant Cell Environ. 14: 881-893.

Gruetter R, Seaquist ER, Ugurbil K 2001 A mathematical model of compartmentalized neurotransmitter metabolism in the human brain. Am. J. Physiol. Endocrinol. Metab. 281: E100-E112.

Gulias J, Flexas J, Mus M, Cifre J, Lefi E, Medrano H 2003 Relationship between maximum leaf photosynthesis, nitrogen content and specific leaf area in Balearic endemic and non-endemic Mediterranean species. Ann. Bot. (Lond.) 92: 215-222.

Gutschick VP 1984 Photosynthesis model for C3 leaves incorporating CO2 transport, propagation of radiation, and biochemistry. 1. Kinetics and their parametrization. Photosynthetica 18: 549-568.

Hackel A, Schauer N, Carrari F, Fernie AR, Grimm B, Kuhn C 2006 Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant J. 45: 180-192.

Hahn BD 1983 A mathematical model of starch and sucrose synthesis in leaves. S. Afr. J. Bot. 2: 250-250.

Hahn BD 1986 A mathematical model of the Calvin cylce - analysis of the steady-state. Ann. Bot. (Lond.) 57: 639-653.

Hall D, De Luca V 2007 Mesocarp localization of a bi-functional resveratrol/hydroxycinnamic acid glucosyltransferase of Concord grape (Vitis labrusca). Plant J. 49: 579-591.

Han N, Shao Q, Lu CM, Wang BS 2005 The leaf tonoplast V-H(+)-ATPase activity of a C3 halophyte Suaeda salsa is enhanced by salt stress in a Ca-dependent mode. J. Plant Physiol. 162: 267-274.

Hanson KR 1984 Stereochemical determination of carbon partitioning between photosynthesis and photorespiration in C3 plants: use of (3R)-D-[3-3H1, 3-14C]glyceric acid. Arch. Biochem. Biophys. 232: 58-75.

Hanson KR, Peterson RB 1985 The stoichiometry of photorespiration during C3-photosynthesis is not fixed: evidence from combined physical and stereochemical methods. Arch. Biochem. Biophys. 237: 300-313.

Harrison J, Pou De Crescenzo MA, Sene O, Hirel B 2003 Does lowering glutamine synthetase activity in nodules modify nitrogen metabolism and growth of Lotus japonicus? Plant Physiol. 133: 253-262.

Hausler RE, Hirsch HJ, Kreuzaler F, Peterhansel C 2002 Overexpression of C4-cycle enzymes in transgenic C3 plants: a biotechnological approach to improve C3 photosynthesis. J. Exp. Bot. 53: 591-607.

Hausler RE, Rademacher T, Li J, Lipka V, Fischer KL, Schubert S, Kreuzaler F, Hirsch HJ 2001 Single and double overexpression of C4-cycle genes had differential effects on the pattern of endogenous enzymes, attenuation of photorespiration and on contents of UV protectants in transgenic potato and tobacco plants. J. Exp. Bot. 52: 1785-1803.

Hausler RE, Schlieben NH, Nicolay P, Fischer K, Fischer KL, Flugge UI 2000 Control of carbon partitioning and photosynthesis by the triose phosphate/phosphate translocator in transgenic tobacco plants (Nicotiana tabacumL.). I. Comparative · Planta 210: 371-382.

He P, Chintamanani S, Chen Z, Zhu L, Kunkel BN, Alfano JR, Tang X, Zhou JM 2004 Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine. Plant J. 37: 589-602.

He XM, Liu HW 2002 Formation of unusual sugars: mechanistic studies and biosynthetic applications. Annu. Rev. Biochem. 71: 701-754.

He Y, Fukushige H, Hildebrand DF, Gan S 2002 Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence. Plant Physiol. 128: 876-884.

Herppich W, Herppich M, von Willert DJ 1992 The irreversible C3 to CAM shift in well-watered and salt-stressed plants of Mesembryanthemum crystallinum is under strict ontogenetic control. Bot. Acta 105: 34-40.

Hibara K, Karim MR, Takada S, Taoka KI, Furutani M, Aida M, Tasaka M 2006 Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation. Plant Cell 18: 2946-2957.

Hikosaka K, Kato MC, Hirose T 2004 Photosynthetic rates and partitioning of absorbed light energy in photoinhibited leaves. Physiol. Plant. 121: 699-708.

Hiltbrunner A, Grunig K, Alvarez-Huerta M, Infanger S, Bauer J, Kessler F 2004 AtToc90, a new GTP-binding component of the Arabidopsis chloroplast protein import machinery. Plant Mol. Biol. 54: 427-440.

Hirel B, Layzell DB, McCashin B, McNally SF, Canvin DT 1983 Isoforms of glutamine synthetase in Panicum species having C3, C4, and intermediate photosynthetic pathways. Can. J. Bot. 61: 2257-2259.

Hofius D, Hajirezaei MR, Geiger M, Tschiersch H, Melzer M, Sonnewald U 2004 RNAi-mediated tocopherol deficiency impairs photoassimilate export in transgenic potato plants. Plant Physiol. 135: 1256-1268.

Holms H 2001 Flux analysis: a basic tool of microbial physiology. Adv. Microb. Physiol. 45: 271-340.

Holtum JA, Winter K 2003 Photosynthetic CO2 uptake in seedlings of two tropical tree species exposed to oscillating elevated concentrations of CO2. Planta 218: 152-158.

Hong JK, Hwang BK 2005 Induction of enhanced disease resistance and oxidative stress tolerance by overexpression of pepper basic PR-1 gene in Arabidopsis. Physiol. Plant. 124: 267-277.

Hoon Yang T, Wittmann C, Heinzle E 2006 Respirometric (13)C flux analysis. Part II: in vivo flux estimation of lysine-producing Corynebacterium glutamicum. Metab. Eng. 8: 432-446.

Horiguchi G, Kodama H, Iba K 2003 Mutations in a gene for plastid ribosomal protein S6-like protein reveal a novel developmental process required for the correct organization of lateral root meristem in Arabidopsis. Plant J. 33: 521-529.

Hortensteiner S, Feller U 2002 Nitrogen metabolism and remobilization during senescence. J. Exp. Bot. 53: 927-937.

Hourton-Cabassa C, Ambard-Bretteville F, Moreau F, Davy de Virville J, Remy R, Francs-Small CC 1998 Stress induction of mitochondrial formate dehydrogenase in potato leaves. Plant Physiol. 116: 627-635.

Hu WW, Gong HB, Pua EC 2005 Identification of stress-induced mitochondrial proteins in cultured tobacco cells. Physiol. Plant. 124: 25-40.

Huang J, Cardoza YJ, Schmelz EA, Raina R, Engelberth J, Tumlinson JH 2003 Differential volatile emissions and salicylic acid levels from tobacco plants in response to different strains of Pseudomonas syringae. Planta 217: 767-775.

Hunter BK, Nicholls KM, Sanders JK 1985 Formaldehyde metabolism by Escherichia coli. Carbon and solvent deuterium incorporation into glycerol, 1,2-propanediol, and 1,3-propanediol. Biochemistry 24: 4148-4155.

Hurst AC, Grams TEE, Ratajczak R 2004 Effects of salinity, high irradiance, ozone, and ethylene on mode of photosynthesis, oxidative stress and oxidative damage in the C-3/CAM intermediate plant Mesembryanthemum crystallinum L.. Plant Cell Environ. 27: 187-197.

Huxman TE, Monson RK 2003 Stomatal responses of C-3, C-3-C-4 and C-4 Flaveria species to light and intercellular CO2 concentration: implications for the evolution of stomatal behaviour. Plant Cell Environ. 26: 313-322.

Hymus GJ, Baker NR, Long SP 2001 Growth in elevated CO2 can both increase and decrease photochemistry and photoinhibition of photosynthesis in a predictable manner. Dactylis glomerata grown in two levels of nitrogen nutrition. Plant Physiol. 127: 1204-1211.

Iliev D, Voytsekh O, Schmidt EM, Fiedler M, Nykytenko A, Mittag M 2006 A heteromeric RNA-binding protein is involved in maintaining acrophase and period of the circadian clock. Plant Physiol. 142: 797-806.

Imaizumi N, Ku MS, Ishihara K, Samejima M, Kaneko S, Matsuoka M 1997 Characterization of the gene for pyruvate, orthophosphate dikinase from rice, a C3 plant, and a comparison of structure and expression between C3 and C4 genes for this protein. Plant Mol. Biol. 34: 701-716.

Ingoldsby LM, Geoghegan KF, Hayden BM, Engel PC 2005 The discovery of four distinct glutamate dehydrogenase genes in a strain of Halobacterium salinarum. Gene 349: 237-244.

Ip C, Thompson HJ, Ganther HE 2000 Selenium modulation of cell proliferation and cell cycle biomarkers in normal and premalignant cells of the rat mammary gland. Cancer Epidemiol. Biomarkers Prev. 9: 49-54.

Ip C, Zhu Z, Thompson HJ, Lisk D, Ganther HE 1999 Chemoprevention of mammary cancer with Se-allylselenocysteine and other selenoamino acids in the rat. Anticancer Res. 19: 2875-2880.

Isabel-LaMoneda I, Diaz I, Martinez M, Mena M, Carbonero P 2003 SAD: a new DOF protein from barley that activates transcription of a cathepsin B-like thiol protease gene in the aleurone of germinating seeds. Plant J. 33: 329-340.

Isshiki M, Tsumoto A, Shimamoto K 2006 The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA. Plant Cell 18: 146-158.

Itoh A, Tanahashi T, Nagakura N, Nishi T 2003 Two chromone-secoiridoid glycosides and three indole alkaloid glycosides from Neonauclea sessilifolia. Phytochemistry 62: 359-369.

Itoh N, Matsuda M, Mabuchi M, Dairi T, Wang J 2002 Chiral alcohol production by NADH-dependent phenylacetaldehyde reductase coupled with in situ regeneration of NADH. Eur. J. Biochem. 269: 2394-2402.

Jamir Y, Guo M, Oh HS, Petnicki-Ocwieja T, Chen S, Tang X, Dickman MB, Collmer A, R Alfano J 2004 Identification of Pseudomonas syringae type III effectors that can suppress programmed cell death in plants and yeast. Plant J. 37: 554-565.

Jang IC, Pahk YM, Song SI, Kwon HJ, Nahm BH, Kim JK 2003 Structure and expression of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture. Plant J. 33: 531-541.

Jeanneau M, Vidal J, Gousset-Dupont A, Lebouteiller B, Hodges M, Gerentes D, Perez P 2002 Manipulating PEPC levels in plants. J. Exp. Bot. 53: 1837-1845.

Jenks MA, Rich PJ, Rhodes D, Ashworth EN, Axtell JD, Ding CK 2000 Leaf sheath cuticular waxes on bloomless and sparse-bloom mutants of Sorghum bicolor. Phytochemistry 54: 577-584.

Jeong SS, Schirch V 1996 Role of cytosolic serine hydroxymethyltransferase in one-carbon metabolism in Neurospora crassa. Arch. Biochem. Biophys. 335: 333-341.

Jia Y, Martin GB 1999 Rapid transcript accumulation of pathogenesis-related genes during an incompatible interaction in bacterial speck disease-resistant tomato plants. Plant Mol. Biol. 40: 455-465.

Jiao D, Huang X, Li X, Chi W, Kuang T, Zhang Q, Ku MS, Cho D 2002 Photosynthetic characteristics and tolerance to photo-oxidation of transgenic rice expressing C(4) photosynthesis enzymes. Photosynth. Res. 72: 85-93.

Jiao JA, Podesta FE, Chollet R, OLeary MH, Andreo CS 1990 Isolation and sequence of an active site peptide from maize leaf phosphoenolpyruvate carboxylase inactivated by pyridoxal 5'-phosphate. Biochim. Biophys. Acta 1041: 291-295.

Jin J, Chen X, Zhou Y, Bartlam M, Guo Q, Liu Y, Sun Y, Gao Y, Ye S, Li G, Rao Z, Qiang B, Yuan J 2002 Crystal structure of the catalytic domain of a human thioredoxin-like protein. Eur. J. Biochem. 269: 2060-2068.

Joet T, Cournac L, Peltier G, Havaux M 2002 Cyclic electron flow around photosystem I in C(3) plants. In vivo control by the redox state of chloroplasts and involvement of the NADH-dehydrogenase complex. Plant Physiol. 128: 760-769.

Johnson GN 2005 Cyclic electron transport in C3 plants: fact or artefact? J. Exp. Bot. 56: 407-416.

Jones AM, Thomas V, Bennett MH, Mansfield J, Grant M 2006 Modifications to the Arabidopsis defense proteome occur prior to significant transcriptional change in response to inoculation with Pseudomonas syringae. Plant Physiol. 142: 1603-1620.

Jumarie C, Fortin C, Houde M, Campbell PG, Denizeau F 2001 Cadmium uptake by Caco-2 cells: effects of Cd complexation by chloride, glutathione, and phytochelatins. Toxicol. Appl. Pharmacol. 170: 29-38.

Kaczorowski T, Sektas M, Skowron P, Podhajska AJ 1999 The FokI methyltransferase from Flavobacterium okeanokoites. Purification and characterization of the enzyme and its truncated derivatives. Mol. Biotechnol. 13: 1-15.

Karl T, Fall R, Rosenstiel TN, Prazeller P, Larsen B, Seufert G, Lindinger W 2002 On-line analysis of the 13CO2 labeling of leaf isoprene suggests multiple subcellular origins of isoprene precursors. Planta 215: 894-905.

Katz J, Wals P, Lee WNP 1993 Isotopomer studies of gluconeogenesis and the Krebs cycle with 13C-labeled lactate. J. Biol. Chem. 268: 25509-25521.

Kawamura T, Shigesada K, Toh H, Okumura S, Yanagisawa S, Izui K 1992 Molecular evolution of phosphoenolpyruvate carboxylase for C4 photosynthesis in maize: comparison of its cDNA sequence with a newly isolated cDNA encoding an isozyme involved in the anaplerotic function. J. Biochem. (Tokyo) 112: 147-154.

Kawasaki T, Nam J, Boyes DC, Holt BF 3rd, Hubert DA, Wiig A, Dangl JL 2005 A duplicated pair of Arabidopsis RING-finger E3 ligases contribute to the RPM1- and RPS2-mediated hypersensitive response. Plant J. 44: 258-270.

Kemling NM, Miller RE, Kowluru A 2002 Glutamine synthetase mRNA is increased by glucose in insulin-secreting beta TC3 cells. Diabetes 51: 2464.

Kempf B, Gade J, Bremer E 1997 Lipoprotein from the osmoregulated ABC transport system OpuA of Bacillus subtilis: purification of the glycine betaine binding protein and characterization of a functional lipidless mutant. J. Bacteriol. 179: 6213-6220.

Kennedy DJ, Gatfield KM, Winpenny JP, Ganapathy V, Thwaites DT 2005 Substrate specificity and functional characterisation of the H+/amino acid transporter rat PAT2 (Slc36a2). Br. J. Pharmacol. 144: 28-41.

Keys AJ 2006 The re-assimilation of ammonia produced by photorespiration and the nitrogen economy of C(3) higher plants. Photosynth. Res. 87: 165-175.

Khan MS, Khalid AM, Malik KA 2005 Phage phiC31 integrase: a new tool in plastid genome engineering. Trends Plant Sci. 10: 1-3.

Khristoforov RR, Sukhareva BS, Dixon HB, Sparkes MJ, Krasnov VP, Bukrina IM 1995 The interaction of glutamate decarboxylase from Escherichia coli with substrate analogues modified at C-3 and C-4. Biochem. Mol. Biol. Int. 36: 77-85.

Kiefer IW, Slusarenko AJ 2003 The pattern of systemic acquired resistance induction within the Arabidopsis rosette in relation to the pattern of translocation. Plant Physiol. 132: 840-847.

Kiirats O, Lea PJ, Franceschi VR, Edwards GE 2002 Bundle sheath diffusive resistance to CO2 and effectiveness of C(4) photosynthesis and refixation of photorespired CO(2) in a C(4) cycle mutant and wild-type Amaranthus edulis. Plant Physiol. 130: 964-976.

Kim C, Ham H, Apel K 2005 Multiplicity of different cell- and organ-specific import routes for the NADPH-protochlorophyllide oxidoreductases A and B in plastids of Arabidopsis seedlings. Plant J. 42: 329-340.

Kim EJ, Sampathkumar SG, Jones MB, Rhee JK, Baskaran G, Goon S, Yarema KJ 2004 Characterization of the metabolic flux and apoptotic effects of O-hydroxyl- and N-acyl-modified N-acetylmannosamine analogs in Jurkat cells. J. Biol. Chem. 279: 18342-18352.

Kim SY, Ma J, Perret P, Li Z, Thomas TL 2002 Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities. Plant Physiol. 130: 688-697.

Kim Y, Oliver DJ 1990 Molecular cloning, transcriptional characterization, and sequencing of cDNA encoding the H-protein of the mitochondrial glycine decarboxylase complex in peas. J. Biol. Chem. 265: 848-853.

Kim YJ, Kim JE, Lee JH, Lee MH, Jung HW, Bahk YY, Hwang BK, Hwang I, Kim WT 2004 The Vr-PLC3 gene encodes a putative plasma membrane-localized phosphoinositide-specific phospholipase C whose expression is induced by abiotic stress in mung bean (Vigna radiata L.). FEBS Lett. 556: 127-136.

Kirschbaum MU, Ohlemacher C, Kuppers M 2004 Loss of quantum yield in extremely low light. Planta 218: 1046-1053.

Kirschbaum MUF 1994 The sensitivity of C3 photosynthesis to increasing CO2 concentration - a theoretical analysis of its dependence on temperature and background CO2 concentration. Plant Cell Environ. 17: 747-754.

Kitaoka S, Koike T 2004 Invasion of broad-leaf tree species into a larch plantation: seasonal light environment, photosynthesis and nitrogen allocation. Physiol. Plant. 121: 604-611.

Kittiwongwattana C, Lutz K, Clark M, Maliga P 2007 Plastid marker gene excision by the phiC31 phage site-specific recombinase. Plant Mol. Biol. 64: 137-143.

Kleijn RJ, van Winden WA, van Gulik WM, Heijnen JJ 2005 Revisiting the 13C-label distribution of the non-oxidative branch of the pentose phosphate pathway based upon kinetic and genetic evidence. FEBS J. 272: 4970-4982.

Kocacinar F, Sage RF 2003 Photosynthetic pathway alters xylem structure and hydraulic function in herbaceous plants. Plant Cell Environ. 26: 2015-2026.

Koch M, Vorwerk S, Masur C, Sharifi-Sirchi G, Olivieri N, Schlaich NL 2006 A role for a flavin-containing mono-oxygenase in resistance against microbial pathogens in Arabidopsis. Plant J. 47: 629-639.

Kohler U, Liaud MF, Mendel RR, Cerff R, Hehl R 1995 The maize GapC4 promoter confers anaerobic reporter gene expression and shows homology to the maize anthocyanin regulatory locus C1. Plant Mol. Biol. 29: 1293-1298.

Koistinen KM, Kokko HI, Hassinen VH, Tervahauta AI, Auriola S, Karenlampi SO 2002 Stress-related RNase PR-10c is post-translationally modified by glutathione in birch. Plant Cell Environ. 25: 707-715.

Komoto J, Yamada T, Takata Y, Markham GD, Takusagawa F 2004 Crystal structure of the S-adenosylmethionine synthetase ternary complex: a novel catalytic mechanism of S-adenosylmethionine synthesis from ATP and Met. Biochemistry 43: 1821-1831.

Koprivova A, Melzer M, von Ballmoos P, Mandel T, Brunold C, Kopriva S 2001 Assimilatory sulfate reduction in C3, C3-C4, and C4 species of Flaveria. Plant Physiol. 127: 543-550.

Kore-eda S, Cushman MA, Akselrod I, Bufford D, Fredrickson M, Clark E, Cushman JC 2004 Transcript profiling of salinity stress responses by large-scale expressed sequence tag analysis in Mesembryanthemum crystallinum. Gene 341: 83-92.

Kosugi Y, Shibata S, Kobashi S 2003 Parameterization of the CO2 and H2O gas exchange of several temperate deciduous broad-leaved trees at the leaf scale considering seasonal changes. Plant Cell Environ. 26: 285-301.

Kotting O, Pusch K, Tiessen A, Geigenberger P, Steup M, Ritte G 2005 Identification of a novel enzyme required for starch metabolism in Arabidopsis leaves. The phosphoglucan, water dikinase. Plant Physiol. 137: 242-252.

Krall JP, Pearcy RW 1993 Concurrent measurements of oxygen and carbon dioxide exchange during lightflecks in maize (Zea mays L.). Plant Physiol. 103: 823-828.

Krishnaswamy S, Bryan JK 1986 Use of monoclonal antibodies for the purification and characterization of the threonine-sensitive isozyme of maize homoserine dehydrogenase. Arch. Biochem. Biophys. 246: 250-262.

Kromer S, Gardestrom P, Samuelsson G 1996 Regulation of the supply of oxaloacetate for mitochondrial metabolism via phosphoenolpyruvate carboxylase in barley leaf protoplasts. II. Effects of metabolites on PEPC activity at different activation states of the protein. Biochim. Biophys. Acta 1289: 351-361.

Kubien DS, Sage RF 2004 Low-temperature photosynthetic performance of a C-4 grass and a co-occurring C-3 grass native to high latitudes. Plant Cell Environ. 27: 907-916.

Kubien DS, Sage RF 2004 Dynamic photo-inhibition and carbon gain in a C-4 and a C-3 grass native to high latitudes. Plant Cell Environ. 27: 1424-1435.

Kubien DS, Von Caemmerer S, Furbank RT, Sage RF 2003 C4 photosynthesis at low temperature. A study using transgenic plants with reduced amounts of Rubisco. Plant Physiol. 132: 1577-1585.

Kubis S, Baldwin A, Patel R, Razzaq A, Dupree P, Lilley K, Kurth J, Leister D, Jarvis P 2003 The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins. Plant Cell 15: 1859-1871.

Kulik V, Hartmann E, Weyand M, Frey M, Gierl A, Niks D, Dunn MF, Schlichting I 2005 On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes. J. Mol. Biol. 352: 608-620.

Kulik V, Hartmann E, Weyand M, Frey M, Gierl A, Niks D, Dunn MF, Schlichting I 2005 On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes. J. Mol. Biol. 352: 608-620.

Kwon SI, Koczan JM, Gassmann W 2004 Two Arabidopsis srfr (suppressor of rps4-RLD) mutants exhibit avrRps4-specific disease resistance independent of RPS4. Plant J. 40: 366-375.

Lai LB, Tausta SL, Nelson TM 2002 Differential regulation of transcripts encoding cytosolic NADP-malic enzyme in C3 and C4 Flaveria species. Plant Physiol. 128: 140-149.

Lai LB, Wang L, Nelson TM 2002 Distinct but conserved functions for two chloroplastic NADP-malic enzyme isoforms in C3 and C4 Flaveria species. Plant Physiol. 128: 125-139.

Laisk A, Eichelmann H, Oja V, Rasulov B, Padu E, Bichele I, Pettai H, Kull O 2005 Adjustment of leaf photosynthesis to shade in a natural canopy: rate parameters. Plant Cell Environ. 28: 375-388.

Lalonde S, Wipf D, Frommer WB 2004 Transport mechanisms for organic forms of carbon and nitrogen between source and sink. Annu. Rev. Plant Biol. 55: 341-372.

Landberg T, Greger M 2004 No phytochelatin (PC2 and PC3) detected in Salix viminalis. Physiol. Plant. 121: 481-487.

Lange BM, Ghassemian M 2003 Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. Plant Mol. Biol. 51: 925-948.

Lara MV, Choung SD, Akhani H, Andreo CS, Edwards GE 2006 Species having C4 single-cell-type photosynthesis in the Chenopodiaceae family evolved a photosynthetic phosphoenolpyruvate carboxylase like that of Kranz-type C4 species. Plant Physiol. 142: 673-684.

Large PJ 1992 Enzymes and pathways of polyamine breakdown in microorganisms. FEMS Microbiol. Rev. 88: 249-262.

Lattanzi FA, Schnyder H, Thornton B 2005 The sources of carbon and nitrogen supplying leaf growth. Assessment of the role of stores with compartmental models. Plant Physiol. 137: 383-395.

Lattanzi FA, Schnyder H, Thornton B 2004 Defoliation effects on carbon and nitrogen substrate import and tissue-bound efflux in leaf growth zones of grasses. Plant Cell Environ. 27: 347-356.

Lawlor DW, Cornic G 2002 Photosynthetic carbon assimilation and associated metabolism in relation to water deficits in higher plants. Plant Cell Environ. 25: 275-294.

Lee JH, Kim DM, Lee JH, Kim J, Bang JW, Kim WT, Pai HS 2005 Functional characterization of NtCEF1, an AP2/EREBP-type transcriptional activator highly expressed in tobacco callus. Planta 222: 211-224.

Lee KH, Cava M, Amiri P, Ottoboni T, Lindquist RN 1992 Betaine:homocysteine methyltransferase from rat liver: purification and inhibition by a boronic acid substrate analog. Arch. Biochem. Biophys. 292: 77-86.

Lee SC, Choi HW, Hwang IS, Choi DS, Hwang BK 2006 Functional roles of the pepper pathogen-induced bZIP transcription factor, CAbZIP1, in enhanced resistance to pathogen infection and environmental stresses. Planta 224: 1209-1225.

Lee SC, Kim SH, An SH, Yi SY, Hwang BK 2006 Identification and functional expression of the pepper pathogen-induced gene, CAPIP2, involved in disease resistance and drought and salt stress tolerance. Plant Mol. Biol. 62: 151-164.

Leegood RC 2002 C4 photosynthesis: principles of CO2 concentration and prospects for its introduction into C3 plants. J. Exp. Bot. 53: 581-590.

Leegood RC, von Caemmerer S 1994 Regulation of photosynthetic carbon assimilation in leaves of C3-C4 intermediate species of Moricandia and Flaveria. Planta 192: 232-238.

Leon-Kloosterziel KM, Verhagen BW, Keurentjes JJ, Van Pelt JA, Rep M, Van Loon LC, Pieterse CM 2005 Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Mol. Biol. 57: 731-748.

Leonardos ED, Grodzinski B 2000 Photosynthesis, immediate export and carbon partitioning in source leaves of C3, C3-C4 intermediate, and C4Panicum and Flaveria species at ambient and elevated CO2 levels Plant Cell Environ. 23: 839-851.

Leuning R 1995 A critical-appraisal of a combined stomatal-photosynthesis model for C3 plants. Plant Cell Environ. 18: 339-355.

Li B, Zhang XQ, Chollet R 1996 Phosphoenolpyruvate carboxylase kinase in tobacco leaves is activated by light in a similar but not identical way as in maize. Plant Physiol. 111: 497-505.

Li L, Brown RM Jr 1993 [beta]-Glucan synthesis in the cotton fiber. II. Regulation and kinetic properties of [beta]-glucan synthases. Plant Physiol. 101: 1143-1148.

Li R, Moore M, King J 2003 Investigating the regulation of one-carbon metabolism in Arabidopsis thaliana. Plant Cell Physiol. 44: 233-241.

Li Y, Dankher OP, Carreira L, Smith AP, Meagher RB 2006 The shoot-specific expression of gamma-glutamylcysteine synthetase directs the long-distance transport of thiol-peptides to roots conferring tolerance to mercury and arsenic. Plant Physiol. 141: 288-298.

Li Y, Dhankher OP, Carreira L, Lee D, Chen A, Schroeder JI, Balish RS, Meagher RB 2004 Overexpression of phytochelatin synthase in Arabidopsis leads to enhanced arsenic tolerance and cadmium hypersensitivity. Plant Cell Physiol. 45: 1787-1797.

Li Y, Ohtsu K, Nemoto K, Tsutsumi N, Hirai A, Nakazono M 2004 The rice pyruvate decarboxylase 3 gene, which lacks introns, is transcribed in mature pollen. J. Exp. Bot. 55: 145-146.

Liang X, Abel S, Keller JA, Shen NF, Theologis A 1992 The 1-aminocyclopropane-1-carboxylate synthase gene family of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 89: 11046-11050.

Lin SI, Wang JG, Poon SY, Su CL, Wang SS, Chiou TJ 2005 Differential regulation of FLOWERING LOCUS C expression by vernalization in cabbage and Arabidopsis. Plant Physiol. 137: 1037-1048.

Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR 2005 An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. Plant J. 41: 304-318.

Liu Y, Koornneef M, Soppe WJ 2007 The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell 19: 433-444.

Long SP, Ainsworth EA, Rogers A, Ort DR 2004 Rising atmospheric carbon dioxide: plants FACE the future. Annu. Rev. Plant Biol. 55: 591-628.

Long SP, Bernacchi CJ 2003 Gas exchange measurements, what can they tell us about the underlying limitations to photosynthesis? Procedures and sources of error. J. Exp. Bot. 54: 2393-2401.

Loreto F, Velikova V, Di Marco G 2001 Respiration in the light measured by (CO2)-C12 emission in (CO2)-C13 atmosphere in maize leaves. Aust. J. Plant Physiol. 28: 1103-1108.

Low R, Rockel B, Kirsch M, Ratajczak R, Hortensteiner S, Martinoia E, Luttge U, Rausch T 1996 Early salt stress effects on the differential expression of vacuolar H(+)-ATPase genes in roots and leaves of Mesembryanthemum crystallinum. Plant Physiol. 110: 259-265.

Lu D, Mulder H, Zhao P, Burgess SC, Jensen MV, Kamzolova S, Newgard CB, Sherry AD 2002 13C NMR isotopomer analysis reveals a connection between pyruvate cycling and glucose-stimulated insulin secretion (GSIS). Proc. Natl. Acad. Sci. U.S.A. 99: 2708-2713.

Lukacin R, Wellmann F, Britsch L, Martens S, Matern U 2003 Flavonol synthase from Citrus unshiu is a bifunctional dioxygenase. Phytochemistry 62: 287-292.

Luttge U 2002 CO2-concentrating: consequences in Crassulacean acid metabolism. J. Exp. Bot. 53: 2131-2142.

Ma HX, Bai GH, Carver BF, Zhou LL 2005 Molecular mapping of a quantitative trait locus for aluminum tolerance in wheat cultivar Atlas 66. Theor. Appl. Genet. 112: 51-57.

Ma JF, Nomoto K 1993 Two related biosynthetic pathways of mugineic acids in gramineous plants. Plant Physiol. 102: 373-378.

Macdonald FD, Chou Q, Buchanan BB 1987 Ion-exchange chromatography separates activities synthesizing and degrading fructose 2,6-bisphosphate from C3 and C4 leaves but not from rat liver. Plant Physiol. 85: 13-16.

Maherali H, Johnson HB, Jackson RB 2003 Stomatal sensitivity to vapour pressure difference over a subambient to elevated CO2 gradient in a C-3/C-4 grassland. Plant Cell Environ. 26: 1297-1306.

Maherali H, Reid CD, Polley HW, Johnson HB, Jackson RB 2002 Stomatal acclimation over a subambient to elevated CO2 gradient in a C-3/C-4 grassland. Plant Cell Environ. 25: 557-566.

Mahesh V, Million-Rousseau R, Ullmann P, Chabrillange N, Bustamante J, Mondolot L, Morant M, Noirot M, Hamon S, de Kochko A, Werck-Reichhart D, Campa C 2007 Functional characterization of two p-coumaroyl ester 3'-hydroxylase genes from coffee tree: evidence of a candidate for chlorogenic acid biosynthesis. Plant Mol. Biol. 64: 145-159.

Majumdar A, Sonawat HM 1998 A two-dimensional 1H detected 13C NMR investigation of pyruvate metabolism in Halobacterium salinarium. J. Biochem. (Tokyo) 123: 115-119.

Makino A, Sato T, Nakano H, Mae T 1997 Leaf photosynthesis, plant growth and nitrogen allocation in rice under different irradiances. Planta 203: 390-398.

Maple J, Moller SG 2007 Plastid division: evolution, mechanism and complexity. Ann. Bot. (Lond.) 99: 565-579.

Maroco JP, Ku MSB, Edwards GE 2000 Utilization of O2 in the metabolic optimization of C4 photosynthesis. Plant Cell Environ. 23: 115-121.

Maroco JP, Ku MSB, Furbank RT, Lea PJ, Leegood RC, Edwards GE 1998 CO2 and O2 dependence of PS II activity in C4 plants having genetically produced deficiencies in the C3 or C4 cycle. Photosynth. Res. 58: 91-101.

Maroco JP, Ku MSB, Lea PJ, Dever LV, Leegood RC, Furbank RT, Edwards GE 1998 Oxygen requirement and inhibition of C4 photosynthesis. An analysis of C4 plants deficient in the C3 and C4 cycles. Plant Physiol. 116: 823-832.

Marshall DM, Muhaidat R, Brown NJ, Liu Z, Stanley S, Griffiths H, Sage RF, Hibberd JM 2007 Cleome, a genus closely related to Arabidopsis, contains species spanning a developmental progression from C(3) to C(4) photosynthesis. Plant J. 51: 886-896.

Marshall JS, Stubbs JD, Taylor WC 1996 Two genes encode highly similar chloroplastic NADP-malic enzymes in Flaveria. Implications for the evolution of C4 photosynthesis. Plant Physiol. 111: 1251-1261.

Martin F, Boiffin V, Pfeffer PE 1998 Carbohydrate and amino acid metabolism in the Eucalyptus globulus-pisolithus tinctorius ectomycorrhiza during glucose utilization. Plant Physiol. 118: 627-635.

Martin F, Winspear MJ, MacFarlane JD, Oaks A 1983 Effect of methionine sulfoximine on the accumulation of ammonia in C3 and C4 leaves: The relationship between NH3 accumulation and photorespiratory activity. Plant Physiol. 71: 177-181.

Mason GF, Petersen KF, de Graaf RA, Shulman GI, Rothman DL 2007 Measurements of the anaplerotic rate in the human cerebral cortex using (13)C magnetic resonance spectroscopy and [1-(13)C] and [2-(13)C] glucose. J. Neurochem. 100: 73-86.

Massonneau A, Condamine P, Wisniewski JP, Zivy M, Rogowsky PM 2005 Maize cystatins respond to developmental cues, cold stress and drought. Biochim. Biophys. Acta 1729: 186-199.

Mastrangelo AM, Belloni S, Barilli S, Ruperti B, Di Fonzo N, Stanca AM, Cattivelli L 2005 Low temperature promotes intron retention in two e-cor genes of durum wheat. Planta 221: 705-715.

Masuda HP, Ramos GB, de Almeida-Engler J, Cabral LM, Coqueiro VM, Macrini CM, Ferreira PC, Hemerly AS 2004 Genome based identification and analysis of the pre-replicative complex of Arabidopsis thaliana. FEBS Lett. 574: 192-202.

Matsuoka M 1995 The gene for pyruvate, orthophosphate dikinase in C4 plants: structure, regulation and evolution. Plant Cell Physiol. 36: 937-943.

Matsuoka M, Furbank RT, Fukayama H, Miyao M 2001 Molecular engineering of C4 photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 297-314.

Matsuzawa T 1982 Disease of the ornithine-proline pathway: delta 1-pyrroline-5-carboxylate reductase deficiency in the retina of retinal degeneration mice. Metab. Pediatr. Syst. Ophthalmol. 6: 123-128.

Mayer RT, McCollum TG, Niedz RP, Hearn CJ, McDonald RE, Berdis E, Doostdar H 1996 Characterization of seven basic endochitinases isolated from cell cultures of Citrus sinensis (L.). Planta 200: 289-295.

McGonigle B, Nelson T 1995 C4 isoform of NADP-malate dehydrogenase. cDNA cloning and expression in leaves of C4, C3, and C3-C4 intermediate species of Flaveria. Plant Physiol. 108: 1119-1126.

Medlyn BE, Dreyer E, Ellsworth D, Forstreuter M, Harley PC, Kirschbaum MUF, Le Roux X, Montpied P, Strassemeyer J, Walcroft A, Wang K, Loustau D 2002 Temperature response of parameters of a biochemically based model of photosynthesis. II. A review of experimental data. Plant Cell Environ. 25: 1167-1179.

Medrano H, Escalona JM, Bota J, Gulias J, Flexas J 2002 Regulation of photosynthesis of C3 plants in response to progressive drought: stomatal conductance as a reference parameter. Ann. Bot. (Lond.) 89: 895-905.

Menard R, Larue JP, Silue D, Thouvenot D 1999 Glucosinolates in cauliflower as biochemical markers for resistance against downy mildew. Phytochemistry 52: 29-35.

Meyer S, Lauterbach C, Niedermeier M, Barth I, Sjolund RD, Sauer N 2004 Wounding enhances expression of AtSUC3, a sucrose transporter from Arabidopsis sieve elements and sink tissues. Plant Physiol. 134: 684-693.

Minchenko O, Opentanova I, Minchenko D, Ogura T, Esumi H 2004 Hypoxia induces transcription of 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-4 gene via hypoxia-inducible factor-1alpha activation. FEBS Lett. 576: 14-20.

Miyao M 2003 Molecular evolution and genetic engineering of C4 photosynthetic enzymes. J. Exp. Bot. 54: 179-189.

Monobe M, Uzawa A, Hino M, Ando K, Kojima S 2005 Glycine betaine, a beer component, protects radiation-induced injury. J. Radiat. Res. (Tokyo) 46: 117-121.

Moon H, Chowrira G, Rowland O, Blacklock BJ, Smith MA, Kunst L 2004 A root-specific condensing enzyme from Lesquerella fendleri that elongates very-long-chain saturated fatty acids. Plant Mol. Biol. 56: 917-927.

Moon KH, Kim BJ, Song BJ 2005 Inhibition of mitochondrial aldehyde dehydrogenase by nitric oxide-mediated S-nitrosylation. FEBS Lett. 579: 6115-6120.

Moons A, Valcke R, Van Montagu M 1998 Low-oxygen stress and water deficit induce cytosolic pyruvate orthophosphate dikinase (PPDK) expression in roots of rice, a C3 plant. Plant J. 15: 89-98.

Morgan PB, Ainsworth EA, Long SP 2003 How does elevated ozone impact soybean? A meta-analysis of photosynthesis, growth and yield. Plant Cell Environ. 26: 1317-1328.

Moroney JV, Bartlett SG, Samuelsson G 2001 Carbonic anhydrases in plants and algae. Plant Cell Environ. 24: 141-153.

Murchie EH, Ferrario-Mery S, Valadier MH, Foyer CH 2000 Short-term nitrogen-induced modulation of phosphoenolpyruvate carboxylase in tobacco and maize leaves. J. Exp. Bot. 51: 1349-1356.

Muzitano MF, Tinoco LW, Guette C, Kaiser CR, Rossi-Bergmann B, Costa SS 2006 The antileishmanial activity assessment of unusual flavonoids from Kalanchoe pinnata. Phytochemistry 67: 2071-2077.

Nagahara N, Yoshii T, Abe Y, Matsumura T 2007 Thioredoxin-dependent enzymatic activation of mercaptopyruvate sulfurtransferase. An intersubunit disulfide bond serves as a redox switch for activation. J. Biol. Chem. 282: 1561-1569.

Nakajima J, Tanaka Y, Yamazaki M, Saito K 2001 Reaction mechanism from leucoanthocyanidin to anthocyanidin 3-glucoside, a key reaction for coloring in anthocyanin biosynthesis. J. Biol. Chem. 276: 25797-25803.

Nakamura M, Katsumata H, Abe M, Yabe N, Komeda Y, Yamamoto KT, Takahashi T 2006 Characterization of the class IV homeodomain-leucine zipper (HD-ZIP IV) gene family in Arabidopsis. Plant Physiol. 141: 1363-1375.

Nakanishi H, Yamaguchi H, Sasakuma T, Nishizawa NK, Mori S 2000 Two dioxygenase genes, Ids3 and Ids2, from Hordeum vulgare are involved in the biosynthesis of mugineic acid family phytosiderophores. Plant Mol. Biol. 44: 199-207.

Nayyar H, Walia DP 2004 Genotypic variation in wheat in response to water stress and abscisic acid- induced accumulation of osmolytes in developing grains. J. Agron. Crop Sci. 190: 39-45.

Ndom JC, Mbafor JT, Azebaze AG, Vardamides JC, Kakam Z, Kamdem AF, Deville A, Ngando TM, Fomum ZT 2006 Secondary metabolites from Senecio burtonii (Compositae). Phytochemistry 67: 838-842.

Neelon K, Schreier HJ, Meekins H, Robinson PM, Roberts MF 2005 Compatible solute effects on thermostability of glutamine synthetase and aspartate transcarbamoylase from Methanococcus jannaschii. Biochim. Biophys. Acta 1753: 164-173.

Niewiadomska E, Karpinska B, Romanowska E, Slesak I, Karpinski S 2004 A salinity-induced C3-CAM transition increases energy conservation in the halophyte Mesembryanthemum crystallinum L. Plant Cell Physiol. 45: 789-794.

Niklas KJ 2006 Plant allometry, leaf nitrogen and phosphorus stoichiometry, and interspecific trends in annual growth rates. Ann. Bot. (Lond.) 97: 155-163.

Nikolov NT, Massman WJ, Schoettle AW 1995 Coupling biochemical and biophysical processes at the leaf level - an equilibrium photosynthesis model for leaves of C3 plants. Ecological Modelling 80: 205-235.

Nikovics K, Blein T, Peaucelle A, Ishida T, Morin H, Aida M, Laufs P 2006 The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 18: 2929-2945.

Niu S, Yuan Z, Zhang Y, Liu W, Zhang L, Huang J, Wan S 2005 Photosynthetic responses of C3 and C4 species to seasonal water variability and competition. J. Exp. Bot. 56: 2867-2876.

Noctor G, Veljovic-Jovanovic S, Driscoll S, Novitskaya L, Foyer CH 2002 Drought and oxidative load in the leaves of C3 plants: a predominant role for photorespiration? Ann. Bot. (Lond.) 89: 841-850.

Nogues S, Tcherkez G, Streb P, Pardo A, Baptist F, Bligny R, Ghashghaie J, Cornic G 2006 Respiratory carbon metabolism in the high mountain plant species Ranunculus glacialis. J. Exp. Bot. 57: 3837-3845.

Nomura M, Katayama K, Nishimura A, Ishida Y, Ohta S, Komari T, Miyao-Tokutomi M, Tajima S, Matsuoka M 2000 The promoter of rbcS in a C3 plant (rice) directs organ-specific, light-dependent expression in a C4 plant (maize), but does not confer bundle sheath cell-specific expression. Plant Mol. Biol. 44: 99-106.

Nomura M, Mai HT, Fujii M, Hata S, Izui K, Tajima S 2006 Phosphoenolpyruvate carboxylase plays a crucial role in limiting nitrogen fixation in Lotus japonicus nodules. Plant Cell Physiol. 47: 613-621.

North AK, Kustu S 1997 Mutant forms of the enhancer-binding protein NtrC can activate transcription from solution. J. Mol. Biol. 267: 17-36.

Nose Y, Rees EM, Thiele DJ 2006 Structure of the Ctr1 copper trans'PORE'ter reveals novel architecture. Trends Biochem. Sci. 31: 604-607.

Novak K, Chovanec P, Skrdleta V, Kropacova M, Lisa L, Nemcova M 2002 Effect of exogenous flavonoids on nodulation of pea (Pisum sativum L.). J. Exp. Bot. 53: 1735-1745.

Nuno JC, Sanchez-Valdenebro I, Perez-Iratxeta C, Melendez-Hevia E, Montero F 1997 Network organization of cell metabolism: monosaccharide interconversion. Biochem. J. 324: 103-111.

Oberhuber W, Edwards GE 1993 Temperature dependence of the linkage of quantum yield of photosystem II to CO2 fixation in C4 and C3 plants. Plant Physiol. 101: 507-512.

Ogee J, Cuntz M, Peylin P, Bariac T 2007 Non-steady-state, non-uniform transpiration rate and leaf anatomy effects on the progressive stable isotope enrichment of leaf water along monocot leaves. Plant Cell Environ. 30: 367-387.

Oguchi R, Hikosaka K, Hirose T 2003 Does the photosynthetic light-acclimation need change in leaf anatomy?. Plant Cell Environ. 26: 505-512.

Oh HS, Collmer A 2005 Basal resistance against bacteria in Nicotiana benthamiana leaves is accompanied by reduced vascular staining and suppressed by multiple Pseudomonas syringae type III secretion system effector proteins. Plant J. 44: 348-359.

Ohto C, Ishida C, Nakane H, Muramatsu M, Nishino T, Obata S 1999 A thermophilic cyanobacterium Synechococcus elongatus has three different Class I prenyltransferase genes. Plant Mol. Biol. 40: 307-321.

Okuda K, Li L, Kudlicka K, Kuga S, Brown RM Jr 1993 [beta]-Glucan synthesis in the cotton fiber. I. Identification of [beta]-1,4- and [beta]-1,3-glucans synthesized in vitro. Plant Physiol. 101: 1131-1142.

Olive MR, Peacock WJ, Dennis ES 1991 The anaerobic responsive element contains two GC-rich sequences essential for binding a nuclear protein and hypoxic activation of the maize Adh1 promoter. Nucleic Acids Res. 19: 7053-7060.

Oliver DJ, Raman R 1995 Glycine decarboxylase: protein chemistry and molecular biology of the major protein in leaf mitochondria. J. Bioenerg. Biomembr. 27: 407-414.

Onate-Sanchez L, Anderson JP, Young J, Singh KB 2007 AtERF14, a member of the ERF family of transcription factors, plays a nonredundant role in plant defense. Plant Physiol. 143: 400-409.

Osakabe K, Yoshioka T, Ichikawa H, Toki S 2002 Molecular cloning and characterization of RAD51-like genes from Arabidopsis thaliana. Plant Mol. Biol. 50: 71-81.

Otto CD, Kianian SF, Elias EM, Stack RW, Joppa LR 2002 Genetic dissection of a major Fusarium head blight QTL in tetraploid wheat. Plant Mol. Biol. 48: 625-632.

Overlach S, Diekmann W, Raschke K 1993 Phosphate translocator of isolated guard-cell chloroplasts from Pisum sativum L. transports glucose-6-phosphate. Plant Physiol. 101: 1201-1207.

Pachepsky LB, Acock B 1996 An adequate model of photosynthesis. 2. Dependence of parameters on environmental factors. Agicultural Systems 50: 227-238.

Padmanaban S, Lin X, Perera I, Kawamura Y, Sze H 2004 Differential expression of vacuolar H+-ATPase subunit c genes in tissues active in membrane trafficking and their roles in plant growth as revealed by RNAi. Plant Physiol. 134: 1514-1526.

Pandey RN, Dhanasekar P 2004 Morphological features and inheritance of foliaceous stipules of primary leaves in cowpea (Vigna unguiculata). Ann. Bot. (Lond.) 94: 469-471.

Pang CH, Zhang SJ, Gong ZZ, Wang BS 2005 NaCl treatment markedly enhances H2O2-scavenging system in leaves of halophyte Suaeda salsa. Physiol. Plant. 125: 490-499.

Parodi AJ 2000 Protein glucosylation and its role in protein folding. Annu. Rev. Biochem. 69: 69-93.

Parsley K, Hibberd JM 2006 The Arabidopsis PPDK gene is transcribed from two promoters to produce differentially expressed transcripts responsible for cytosolic and plastidic proteins. Plant Mol. Biol. 62: 339-349.

Paseshnichenko VA 1998 A new alternative non-mevalonate pathway for isoprenoid biosynthesis in eubacteria and plants. Biochemistry (Mosc.) 63: 139-148.

Pasternack LB, Laude DA Jr, Appling DR 1994 13C NMR analysis of intercompartmental flow of one-carbon units into choline and purines in Saccharomyces cerevisiae. Biochemistry 33: 74-82.

Patel M, Corey AC, Yin LP, Ali S, Taylor WC, Berry JO 2004 Untranslated regions from C4 Amaranth AhRbcS1 mRNAs confer translational enhancement and preferential bundle sheath cell expression in transgenic C4 Flaveria bidentis. Plant Physiol. 136: 3550-3561.

Pavillard V, Drbal AAA, Swaine DJ, Phillips RM, Double JA, Nicolaou A 2004 Analysis of cell-cycle kinetics and sulfur amino acid metabolism in methionine-dependent tumor cell lines; the effect of homocysteine supplementation. Biochem. Pharmacol. 67: 1587-1599.

Pawlik-Skowronska B 2001 Phytochelatin production in freshwater algae Stigeoclonium in response to heavy metals contained in mining water; effects of some environmental factors. Aquat. Toxicol. 52: 241-249.

Pearcy RW, Gross LJ, He D 1997 An improved dynamic model of photosynthesis for estimation of carbon gain in sunfleck light regimes. Plant Cell Environ. 20: 411-424.

Perchepied L, Kroj T, Tronchet M, Loudet O, Roby D 2006 Natural variation in partial resistance to Pseudomonas syringae is controlled by two major QTLs in Arabidopsis thaliana. PLoS ONE 1: e123.

Perkins MC, Roberts CJ, Briggs D, Davies MC, Friedmann A, Hart CA, Bell GA 2005 Surface morphology and chemistry of Prunus laurocerasus L. leaves: a study using X-ray photoelectron spectroscopy, time-of-flight secondary-ion mass spectrometry, atomic-force microscopy and scanning-electron microscopy. Planta 221: 123-134.

Peters-Wendisch PG, Wendisch VF, de Graaf AA, Eikmanns BJ, Sahm H 1996 C3-carboxylation as an anaplerotic reaction in phosphoenolpyruvate carboxylase-deficient Corynebacterium glutamicum. Arch. Microbiol. 165: 387-396.

Petersen S, de Graaf AA, Eggeling L, Mollney M, Wiechert W, Sahm H 2000 In vivo quantification of parallel and bidirectional fluxes in the anaplerosis of Corynebacterium glutamicum. J. Biol. Chem. 275: 35932-35941.

Pettersson G 1997 Control properties of the Calvin photosynthesis cycle at physiological carbon dioxide concentrations. Biochim. Biophys. Acta 1322: 173-182.

Pettersson G 1996 Error associated with experimental flux control coefficient determinations in the Calvin cycle. Biochim. Biophys. Acta 1289: 169-174.

Pettersson G, Ryde-Pettersson U 1989 Metabolites controlling the rate of starch synthesis in the chloroplast of C3 plants. Eur. J. Biochem. 179: 169-172.

Pettersson G, Ryde-Pettersson U 1987 A rapid-equilibrium model for the control of the Calvin photosynthesis cycle by cytosolic orthophosphate. Eur. J. Biochem. 169: 423-429.

Pettersson G, Ryde-Pettersson U 1990 Model studies of the regulation of the Calvin photosynthesis cycle by cytosolic metabolites. Biomed. Biochim. Acta 49: 723-732.

Pfeffer PE, Shachar-Hill Y, Tu SI, Brauer D 2004 Measurement of intracellular pH in maize root tissue with alpha-methyl fluorinated alanines and in-vivo F-19 NMR spectroscopy. Physiol. Plant. 122: 373-379.

Pfefferle W, Mockel B, Bathe B, Marx A 2003 Biotechnological manufacture of lysine. Adv. Biochem. Eng. Biotechnol. 79: 59-112.

Pierce S, Winter K, Griffiths H 2002 The role of CAM in high rainfall cloud forests: an in situ comparison of photosynthetic pathways in Bromeliaceae. Plant Cell Environ. 25: 1181-1189.

Pieters AJ, Tezara W, Herrera A 2003 Operation of the xanthophyll cycle and degradation of D1 protein in the inducible CAM plant, Talinum triangulare, under water deficit. Ann. Bot. (Lond.) 92: 393-399.

Pinelli P, Loreto F 2003 12CO2 emission from different metabolic pathways measured in illuminated and darkened C3 and C4 leaves at low, atmospheric and elevated CO2 concentration. J. Exp. Bot. 54: 1761-1769.

Platt SG, Bassham JA 1978 Photosynthesis and increased production of protein. Adv. Exp. Med. Biol. 105: 195-247.

Podila GK, Rogers LM, Kolattukudy PE 1993 Chemical signals from avocado surface wax trigger germination and appressorium formation in Colletotrichum gloeosporioides. Plant Physiol. 103: 267-272.

Pohnert G, Zhang S, Husain A, Wilson DB, Ganem B 1999 Regulation of phenylalanine biosynthesis. Studies on the mechanism of phenylalanine binding and feedback inhibition in the Escherichia coli P-protein. Biochemistry 38: 12212-12217.

Pollock C, Farrar J, Tomos D, Gallagher J, Lu C, Koroleva O 2003 Balancing supply and demand: the spatial regulation of carbon metabolism in grass and cereal leaves. J. Exp. Bot. 54: 489-494.

Prabhu V, Chatson KB, Abrams GD, King J 1996 13C nuclear magnetic resonance detection of interactions of serine hydroxymethyltransferase with C1-tetrahydrofolate synthase and glycine decarboxylase complex activities in Arabidopsis. Plant Physiol. 112: 207-216.

Prabhu V, Chatson KB, Lui H, Abrams GD, King J 1998 Effects of sulfanilamide and methotrexate on 13C fluxes through the glycine decarboxylase/serine hydroxymethyltransferase enzyme system in Arabidopsis. Plant Physiol. 116: 137-144.

Prat-Gay G, Paladini A, Stein M, Wolosiuk RA 1991 The effect of high hydrostatic pressure on the modulation of regulatory enzymes from spinach chloroplasts. J. Biol. Chem. 266: 20913-20921.

Previs SF, Des Rosiers C, Beylot M, David F, Brunengraber H 1996 Assay of the 13C and 2H mass isotopomer distribution of phosphoenolpyruvate by gas chromatography/mass spectrometry. J. Mass Spectrom. 31: 643-648.

Qin X, Soulard J, Laublin G, Morse D, Cappadocia M 2005 Molecular analysis of the conserved C4 region of the S11-RNase of Solanum chacoense. Planta 221: 531-537.

Qu LJ, Zhu YX 2006 Transcription factor families in Arabidopsis: major progress and outstanding issues for future research. Curr. Opin. Plant Biol. 9: 544-549.

Quick WP, FIichtner K, Schulze ED, Wendler R, Leegood RC, Mooney H, Rodermel SR, Bogorad L, Stitt M 1992 Decreased ribulose-1,5-bisphosphate carboxylase-oxygenase in transgenic tobacco transformed with antisense rbcS. 4. Impact on photosynthesis in conditions of altered nitrogen supply. Planta 188: 522-531.

Raab A, Feldmann J, Meharg AA 2004 The nature of arsenic-phytochelatin complexes in Holcus lanatus and Pteris cretica. Plant Physiol. 134: 1113-1122.

Raab A, Ferreira K, Meharg AA, Feldmann J 2007 Can arsenic-phytochelatin complex formation be used as an indicator for toxicity in Helianthus annuus? J. Exp. Bot. 58: 1333-1338.

Rademacher T, Hausler RE, Hirsch HJ, Zhang L, Lipka V, Weier D, Kreuzaler F, Peterhansel C 2002 An engineered phosphoenolpyruvate carboxylase redirects carbon and nitrogen flow in transgenic potato plants. Plant J. 32: 25-39.

Raghavendra AS, Yin ZH, Heber U 1993 Liight-dependent pH changes in leaves of C4 plants. Comparison of the pH response to carbon dioxide and oxygen with that of C3 plants. Planta 189: 278-287.

Rajagopalan AV, Devi MT, Raghavendra AS 1994 Molecular biology of C4 phosphoenolpyruvate carboxylase: structure, regulation and genetic engineering. Photosynth. Res. 39: 115-135.

Rajagoplan AV, Devi MT, Raghavendra AS 1993 Patterns of phosphoenolpyruvate carboxylase activity and cytosolic pH during light activation and dark deactivation in C3 and C4 plants. Photosynth. Res. 38: 51-60.

Ralph J, Akiyama T, Kim H, Lu F, Schatz PF, Marita JM, Ralph SA, Srinivasa Reddy MS, Chen F, Dixon RA 2006 Effects of coumarate 3-hydroxylase down-regulation on lignin structure. J. Biol. Chem. 281: 8843-8853.

Ramaswamy KS, Endley S, Golden JW 1996 Nitrate reductase activity and heterocyst suppression on nitrate in Anabaena sp. strain PCC 7120 require moeA. J. Bacteriol. 178: 3893-3898.

Ranocha P, Chabannes M, Chamayou S, Danoun S, Jauneau A, Boudet AM, Goffner D 2002 Laccase down-regulation causes alterations in phenolic metabolism and cell wall structure in poplar. Plant Physiol. 129: 145-155.

Rao SK, Magnin NC, Reiskind JB, Bowes G 2002 Photosynthetic and other phosphoenolpyruvate carboxylase isoforms in the single-cell, facultative C(4) system of Hydrilla verticillata. Plant Physiol. 130: 876-886.

Rashotte AM, Jenks MA, Feldmann KA 2001 Cuticular waxes on eceriferum mutants of Arabidopsis thaliana. Phytochemistry 57: 115-123.

Rathinasabapathi B, Wu S, Sundaram S, Rivoal J, Srivastava M, Ma LQ 2006 Arsenic resistance in Pteris vittata L.: identification of a cytosolic triosephosphate isomerase based on cDNA expression cloning in Escherichia coli. Plant Mol. Biol. 62: 845-857.

Rathnam CK, Chollet R 1979 Photosynthetic carbon metabolism in Panicum milioides, a C3-C4 intermediate species: evidence for a limited C4 dicarboxylic acid pathway of photosynthesis. Biochim. Biophys. Acta 548: 500-519.

Reddy SG, Sacchettini JC, Blanchard JS 1995 Expression, purification, and characterization of Escherichia coli dihydrodipicolinate reductase. Biochemistry 34: 3492-3501.

Redondo-Gomez S, Mateos-Naranjo E, Davy AJ, Fernandez-Munoz F, Castellanos EM, Luque T, Figueroa ME 2007 Growth and photosynthetic responses to salinity of the salt-marsh shrub Atriplex portulacoides. Ann. Bot. (Lond.) 100: 555-563.

Reinbothe S, Pollmann S, Springer A, James RJ, Tichtinsky G, Reinbothe C 2005 A role of Toc33 in the protochlorophyllide-dependent plastid import pathway of NADPH:protochlorophyllide oxidoreductase (POR) A. Plant J. 42: 1-12.

Reinfelder JR, Milligan AJ, Morel FM 2004 The role of the C4 pathway in carbon accumulation and fixation in a marine diatom. Plant Physiol. 135: 2106-2111.

Remboutsika E, Kohlhaw GB 1994 Molecular architecture of a Leu3p-DNA complex in solution: a biochemical approach. Mol. Cell Biol. 14: 5547-5457.

Renne P, Dressen U, Hebbeker U, Hille D, Flugge UI, Westhoff P, Weber AP 2003 The Arabidopsis mutant dct is deficient in the plastidic glutamate/malate translocator DiT2. Plant J. 35: 316-331.

Richman A, Swanson A, Humphrey T, Chapman R, McGarvey B, Pocs R, Brandle J 2005 Functional genomics uncovers three glucosyltransferases involved in the synthesis of the major sweet glucosides of Stevia rebaudiana. Plant J. 41: 56-67.

Ricoult C, Cliquet JB, Limami AM 2005 Stimulation of alanine amino transferase (AlaAT) gene expression and alanine accumulation in embryo axis of the model legume Medicago truncatula contribute to anoxia stress tolerance. Physiol. Plant. 123: 30-39.

Rieder C, Eisenreich W, O'Brien J, Richter G, Gotze E, Boyle P, Blanchard S, Bacher A, Simon H 1998 Rearrangement reactions in the biosynthesis of molybdopterin--an NMR study with multiply 13C/15N labelled precursors. Eur. J. Biochem. 255: 24-36.

Ripley BS, Gilbert ME, Ibrahim DG, Osborne CP 2007 Drought constraints on C4 photosynthesis: stomatal and metabolic limitations in C3 and C4 subspecies of Alloteropsis semialata. J. Exp. Bot. 58: 1351-1363.

Rishavy MA, Cleland WW 2000 13C and 15N kinetic isotope effects on the reaction of aspartate aminotransferase and the tyrosine-225 to phenylalanine mutant. Biochemistry 39: 7546-7551.

Rivero-Cruz B, Rivero-Cruz I, Rodriguez-Sotres R, Mata R 2007 Effect of natural and synthetic benzyl benzoates on calmodulin. Phytochemistry 68: 1147-1155.

Roberts K, Granum E, Leegood RC, Raven JA 2007 C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiol. 145: 230-235.

Rock CD, Sun X 2005 Crosstalk between ABA and auxin signaling pathways in roots of Arabidopsis thaliana (L.) Heynh. Planta 222: 98-106.

Rogers A, Allen DJ, Davey PA, Morgan PB, Ainsworth EA, Bernacchi CJ, Cornic G, Dermody O, Dohleman FG, Heaton EA, Mahoney J, Zhu XG, Delucia EH, Ort DR, Long SP 2004 Leaf photosynthesis and carbohydrate dynamics of soybeans grown throughout their life-cycle under Free-Air Carbon dioxide Enrichment. Plant Cell Environ. 27: 449-458.

Rogers SW, Rogers JC 1999 Cloning and characterization of a gibberellin-induced RNase expressed in barley aleurone cells. Plant Physiol. 119: 1457-1464.

Romanowska E, Igamberdiev AU, Parys E, Gardestrom P 2002 Stimulation of respiration by Pb2+ in detached leaves and mitochondria of C3 and C4 plants. Physiol. Plant. 116: 148-154.

Rondeau P, Rouch C, Besnard G 2005 NADP-malate dehydrogenase gene evolution in Andropogoneae (Poaceae): gene duplication followed by sub-functionalization. Ann. Bot. (Lond.) 96: 1307-1314.

Rontani JF, Jameson I, Christodoulou S, Volkman JK 2007 Free radical oxidation (autoxidation) of alkenones and other lipids in cells of Emiliania huxleyi. Phytochemistry 68: 913-924.

Rossini L, Cribb L, Martin DJ, Langdale JA 2001 The maize golden2 gene defines a novel class of transcriptional regulators in plants. Plant Cell 13: 1231-1244.

Rothstein A, Mack E 1992 Volume-activated calcium uptake: its role in cell volume regulation of Madin-Darby canine kidney cells. Am. J. Physiol. 262: C339-C347.

Rubio-Somoza I, Martinez M, Abraham Z, Diaz I, Carbonero P 2006 Ternary complex formation between HvMYBS3 and other factors involved in transcriptional control in barley seeds. Plant J. 47: 269-281.

Rubio-Somoza I, Martinez M, Diaz I, Carbonero P 2006 HvMCB1, a R1MYB transcription factor from barley with antagonistic regulatory functions during seed development and germination. Plant J. 45: 17-30.

Ruelland E, Miginiac-Maslow M 1999 Regulation of chloroplast enzyme activities by thioredoxins: activation or relief from inhibition? Trends Plant Sci. 4: 136-141.

Russell DA, Sachs MM 1989 Differential expression and sequence analysis of the maize glyceraldehyde-3-phosphate dehydrogenase gene family. Plant Cell 1: 793-803.

Rylott EL, Metzlaff K, Rawsthorne S 1998 Developmental and environmental effects on the expression of the C3-C4 intermediate phenotype in Moricandia arvensis. Plant Physiol. 118: 1277-1284.

Sage RF 2002 Variation in the k(cat) of Rubisco in C3 and C4 plants and some implications for photosynthetic performance at high and low temperature. J. Exp. Bot. 53: 609-620.

Sage RF, Kubien DS 2007 The temperature response of C(3) and C(4) photosynthesis. Plant Cell Environ. 30: 1086-1106.

Sage RF, McKown AD 2006 Is C4 photosynthesis less phenotypically plastic than C3 photosynthesis? J. Exp. Bot. 57: 303-317.

Sage RF, Seemann JR 1993 Regulation of ribulose-1,5-bisphosphate carboxylase/oxygenase activity in response to reduced light intensity in C4 plants. Plant Physiol. 102: 21-28.

Sakata T, Yokoi Y 2002 Analysis of the O-2 dependency in leaf-level photosynthesis of two Reynoutria japonica populations growing at different altitudes. Plant Cell Environ. 25: 65-74.

Saltveit ME, Choi YJ, Tomas-Barberan FA 2005 Mono-carboxylic acids and their salts inhibit wound-induced phenolic accumulation in excised lettuce (Lactuca sativa) leaf tissue. Physiol. Plant. 125: 454-463.

Salvucci ME, Crafts-Brandner SJ 2004 Inhibition of photosynthesis by heat stress: the activation state of Rubisco as a limiting factor in photosynthesis. Physiol. Plant. 120: 179-186.

Sanchez R, Cejudo FJ 2003 Identification and expression analysis of a gene encoding a bacterial-type phosphoenolpyruvate carboxylase from Arabidopsis and rice. Plant Physiol. 132: 949-957.

Sanchez R, Flores A, Cejudo FJ 2006 Arabidopsis phosphoenolpyruvate carboxylase genes encode immunologically unrelated polypeptides and are differentially expressed in response to drought and salt stress. Planta 223: 901-909.

Santos PM, Thornton B, Corsi M 2002 Nitrogen dynamics in the intact grasses Poa trivialis and Panicum maximum receiving contrasting supplies of nitrogen. J. Exp. Bot. 53: 2167-2176.

Sawada K, Shiraiwa Y 2004 Alkenone and alkenoic acid compositions of the membrane fractions of Emiliania huxleyi. Phytochemistry 65: 1299-1307.

Sawada Y, Kinoshita K, Akashi T, Aoki T, Ayabe S 2002 Key amino acid residues required for aryl migration catalysed by the cytochrome P450 2-hydroxyisoflavanone synthase. Plant J. 31: 555-564.

Schleucher J, Vanderveer P, Markley JL, Sharkey TD 1999 Intramolecular deuterium distributions reveal disequilibrium of chloroplast phosphoglucose isomerase. Plant Cell Environ. 22: 525-533.

Schmelz EA, Engelberth J, Tumlinson JH, Block A, Alborn HT 2004 The use of vapor phase extraction in metabolic profiling of phytohormones and other metabolites. Plant J. 39: 790-808.

Schultheiss H, Dechert C, Kogel KH, Huckelhoven R 2003 Functional analysis of barley RAC/ROP G-protein family members in susceptibility to the powdery mildew fungus. Plant J. 36: 589-601.

Schwender J, Shachar-Hill Y, Ohlrogge JB 2006 Mitochondrial metabolism in developing embryos of Brassica napus. J. Biol. Chem. 281: 34040-34047.

Sebastian RL, Kearsey MJ, King GJ 2002 Identification of quantitative trait loci controlling developmental characteristics of Brassica oleracea L.. Theor. Appl. Genet. 104: 601-609.

Sebela M, Brauner F, Radova A, Jacobsen S, Havlis J, Galuszk P, Pec P 2000 Characterisation of a homogeneous plant aminoaldehyde dehydrogenase. Biochim. Biophys. Acta 1480: 329-341.

Sebela M, Frebort I, Lemr K, Brauner F, Pec P 2000 A study on the reactions of plant copper amine oxidase with C3 and C4 aliphatic diamines. Arch. Biochem. Biophys. 384: 88-99.

Selote DS, Khanna-Chopra R 2004 Drought-induced spikelet sterility is associated with an inefficient antioxidant defence in rice panicles. Physiol. Plant. 121: 462-471.

Seshime Y, Juvvadi PR, Fujii I, Kitamoto K 2005 Genomic evidences for the existence of a phenylpropanoid metabolic pathway in Aspergillus oryzae. Biochem. Biophys. Res. Commun. 337: 747-751.

Sharkey TD, Loreto F, Delwiche CF, Treichel IW 1991 Fractionation of carbon isotopes during biogenesis of atmospheric isoprene. Plant Physiol. 97: 463-466.

Sharma PK, Hall DO 1991 Interaction of salt stress and photoinhibition on photosynthesis in barley and sorghum. J. Plant Physiol. 138: 614-619.

Shen QJ, Casaretto JA, Zhang P, Ho TH 2004 Functional definition of ABA-response complexes: the promoter units necessary and sufficient for ABA induction of gene expression in barley ( Hordeum vulgare L.). Plant Mol. Biol. 54: 111-124.

Shin HJ, Chong CK, Chang SI, Choi JD 2000 Structural and functional role of cysteinyl residues in tobacco acetolactate synthase. Biochem. Biophys. Res. Commun. 271: 801-806.

Shome K, Nie Y, Romero G 1998 ADP-ribosylation factor proteins mediate agonist-induced activation of phospholipase D. J. Biol. Chem. 273: 30836-30841.

Siatkin SP, Berezov TT, Gridina NIa, Bundiuk LS, Kovalishin IaF 1991 Polyamines as biochemical markers of the antiproliferative effect of inhibitors of polyamine and putrescine biosynthesis enzymes in L-cell tissue cultures. Vopr. Med. Khim. 37: 77-78.

Siddiqui NU, Chung HJ, Thomas TL, Drew MC 1998 Abscisic acid-dependent and -independent expression of the carrot late-embryogenesis-abundant-class gene Dc3 in transgenic tobacco seedlings. Plant Physiol. 118: 1181-1190.

Simons BH, Millenaar FF, Mulder L, Van Loon LC, Lambers H 1999 Enhanced expression and activation of the alternative oxidase during infection of Arabidopsis with Pseudomonas syringae pv tomato. Plant Physiol. 120: 529-538.

Simpson RJ, Davidson BE 1976 Studies on 3-deoxy-D-arabinoheptulosonate-7-phosphate synthetase(phe) from Escherichia coli K12. 2. Kinetic properties. Eur. J. Biochem. 70: 501-507.

Smirnoff N, Conklin PL, Loewus FA 2001 Biosynthesis of ascorbic acid in plants: a renaissance. Annu. Rev. Plant Physiol. Plant Mol. Biol. 52: 437-467.

Snyder KA, Richards JH, Donovan LA 2003 Night-time conductance in C3 and C4 species: do plants lose water at night? J. Exp. Bot. 54: 861-865.

Sohn KH, Lee SC, Jung HW, Hong JK, Hwang BK 2006 Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. Plant Mol. Biol. 61: 897-915.

Somerville CR 2001 An early Arabidopsis demonstration. Resolving a few issues concerning photorespiration. Plant Physiol. 125: 20-24.

Spoel SH, Koornneef A, Claessens SM, Korzelius JP, Van Pelt JA, Mueller MJ, Buchala AJ, Metraux JP, Brown R, Kazan K, Van Loon LC, Dong X, Pieterse CM 2003 NPR1 modulates cross-talk between salicylate- and jasmonate-dependent defense pathways through a novel function in the cytosol. Plant Cell 15: 760-770.

Stadler R, Lauterbach C, Sauer N 2005 Cell-to-cell movement of green fluorescent protein reveals post-phloem transport in the outer integument and identifies symplastic domains in Arabidopsis seeds and embryos. Plant Physiol. 139: 701-712.

Stangeland B, Nestestog R, Grini PE, Skrbo N, Berg A, Salehian Z, Mandal A, Aalen RB 2005 Molecular analysis of Arabidopsis endosperm and embryo promoter trap lines: reporter-gene expression can result from T-DNA insertions in antisense orientation, in introns and in intergenic regions, in addition to sense insertion at the 5' end of genes. J. Exp. Bot. 56: 2495-2505.

Steeghs M, Bais HP, De Gouw J, Goldan P, Kuster W, Northway M, Fall R, Vivanco JM 2004 Proton-transfer-reaction mass spectrometry as a new tool for real time analysis of root-secreted volatile organic compounds in Arabidopsis. Plant Physiol. 135: 47-58.

Stepien P, Klobus G 2005 Antioxidant defense in the leaves of C3 and C4 plants under salinity stress. Physiol. Plant. 125: 31-40.

Stevenson DE, Akhtar M, Gani D 1990 L-Methionine decarboxylase from Dryopteris filix-mas: purification, characterization, substrate specificity, abortive transamination of the coenzyme, and stereochemical courses of substrate decarboxylation and coenzyme transamination. Biochemistry 29: 7631-7647.

Stone SL, Hauksdottir H, Troy A, Herschleb J, Kraft E, Callis J 2005 Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Plant Physiol. 137: 13-30.

Subramanian S, Rajagopal B, Rock CD 2002 Harlequin (hlq) and short blue root (sbr), two Arabidopsis mutants that ectopically express an abscisic acid- and auxin-inducible transgenic carrot promoter and have pleiotropic effects on morphogenesis. Plant Mol. Biol. 49: 93-105.

Sun J, Kelemen GH, Fernandez-Abalos JM, Bibb MJ 1999 Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3(2). Microbiology 145: 2221-2227.

Suzuki H, Ohnishi Y, Furusho Y, Sakuda S, Horinouchi S 2006 Novel benzene ring biosynthesis from C3 and C4 primary metabolites by two enzymes. J. Biol. Chem. 281: 36944-36951.

Suzuki S, Murai N, Burnell JN, Arai M 2000 Changes in photosynthetic carbon flow in transgenic rice plants that express C4-type phosphoenolpyruvate carboxykinase from Urochloa panicoides. Plant Physiol. 124: 163-172.

Szebenyi DM, Musayev FN, di Salvo ML, Safo MK, Schirch V 2004 Serine hydroxymethyltransferase: role of glu75 and evidence that serine is cleaved by a retroaldol mechanism. Biochemistry 43: 6865-6876.

Taguchi H, Maeda M, Nishitani H, Okumura K, Shimabayashi Y, Iwai K 1992 Effects of cinchomeronic acid and related compounds on the growth of radish seedlings. Biosci. Biotechnol. Biochem. 56: 1921-1923.

Takahashi A, Casais C, Ichimura K, Shirasu K 2003 HSP90 interacts with RAR1 and SGT1 and is essential for RPS2-mediated disease resistance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 100: 11777-11782.

Takahashi S, Bauwe H, Badger M 2007 Impairment of the photorespiratory pathway accelerates photoinhibition of photosystem II by suppression of repair but not acceleration of damage processes in Arabidopsis. Plant Physiol. 144: 487-494.

Takashima T, Hikosaka K, Hirose T 2004 Photosynthesis or persistence: nitrogen allocation in leaves of evergreen and deciduous Quercus species. Plant Cell Environ. 27: 1047-1054.

Takatsuka Y, Yamaguchi Y, Ono M, Kamio Y 2000 Gene cloning and molecular characterization of lysine decarboxylase from Selenomonas ruminantium delineate its evolutionary relationship to ornithine decarboxylases from eukaryotes. J. Bacteriol. 182: 6732-6741.

Tang D, Ade J, Frye CA, Innes RW 2005 Regulation of plant defense responses in Arabidopsis by EDR2, a PH and START domain-containing protein. Plant J. 44: 245-257.

Tausta SL, Coyle HM, Rothermel B, Stiefel V, Nelson T 2002 Maize C4 and non-C4 NADP-dependent malic enzymes are encoded by distinct genes derived from a plastid-localized ancestor. Plant Mol. Biol. 50: 635-652.

Taybi T, Nimmo HG, Borland AM 2004 Expression of phosphoenolpyruvate carboxylase and phosphoenolpyruvate carboxylase kinase genes. Implications for genotypic capacity and phenotypic plasticity in the expression of crassulacean acid metabolism. Plant Physiol. 135: 587-598.

Tcherkez G, Cornic G, Bligny R, Gout E, Ghashghaie J 2005 In vivo respiratory metabolism of illuminated leaves. Plant Physiol. 138: 1596-1606.

Tcherkez G, Hodges M 2007 How stable isotopes may help to elucidate primary nitrogen metabolism and its interaction with (photo)respiration in C3 leaves. J. Exp. Bot. Jul 23 [Epub ahead of print].

Temple SJ, Vance CP, Gantt JS 1998 Glutamate synthase and nitrogen assimilation. Trends Plant Sci. 3: 51-56.

ten Have A, Woltering EJ 1997 Ethylene biosynthetic genes are differentially expressed during carnation (Dianthus caryophyllus L.) flower senescence. Plant Mol. Biol. 34: 89-97.

Terada K, Suwa K, Takeyama S, Honda C, Kamisako W 1996 Biosynthesis of the acetylenic compounds in cultured cells of Asparagus officinalis from D- and 13C-labelled phenylalanines. Biol. Pharm. Bull. 19: 748-751.

Terashima I, Hanba YT, Tazoe Y, Vyas P, Yano S 2006 Irradiance and phenotype: comparative eco-development of sun and shade leaves in relation to photosynthetic CO2 diffusion. J. Exp. Bot. 57: 343-354.

Tetu SG, Tanz SK, Vella N, Burnell JN, Ludwig M 2007 The Flaveria bidentis beta-carbonic anhydrase gene family encodes cytosolic and chloroplastic isoforms demonstrating distinct organ-specific expression patterns. Plant Physiol. 144: 1316-1327.

Theobald JC, Mitchell RA, Parry MA, Lawlor DW 1998 Estimating the excess investment in ribulose-1,5-bisphosphate carboxylase/oxygenase in leaves of spring wheat grown under elevated CO2. Plant Physiol. 118: 945-955.

Thilmony R, Underwood W, He SY 2006 Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. Plant J. 46: 34-53.

Thorsen VA, Bruland O, Lillehaug JR, Holmsen H 1998 Choline derived from the phosphatidylcholine specific phospholipase D is not directly available for the CDP choline pathway in phorbol ester-treated C3H10T1/2 Cl 8 fibroblasts. Mol. Cell Biochem. 187: 147-154.

Thwaites DT, Anderson CM 2007 Deciphering the mechanisms of intestinal imino (and amino) acid transport: the redemption of SLC36A1. Biochim. Biophys. Acta 1768: 179-197.

Tian L, DellaPenna D 2001 Characterization of a second carotenoid beta-hydroxylase gene from Arabidopsis and its relationship to the LUT1 locus. Plant Mol. Biol. 47: 379-388.

Tissue DT, Griffin KL, Thomas RB, Strain BR 1995 Effects of low and elevated CO2 on C3 and C4 annuals. 2. Photosynthesis and leaf biochemistry. Oecologia 101: 21-28.

Todd J, Post-Beittenmiller D, Jaworski JG 1999 KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J. 17: 119-130.

Tolbert NE 1997 The C2 oxidative photosynthetic carbon cycle. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48: 1-25.

Ton J, De Vos M, Robben C, Buchala A, Metraux JP, Van Loon LC, Pieterse CM 2002 Characterization of Arabidopsis enhanced disease susceptibility mutants that are affected in systemically induced resistance. Plant J. 29: 11-21.

Torjek O, Berger D, Meyer RC, Mussig C, Schmid KJ, Rosleff Sorensen T, Weisshaar B, Mitchell-Olds T, Altmann T 2003 Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis. Plant J. 36: 122-140.

Torres Md M, Sanchez P, Fernandez-Delmond I, Grant M 2003 Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance. Plant J. 33: 665-676.

Touchette BW, Burkholder JM 2000 Overview of the physiological ecology of carbon metabolism in seagrasses. J. Exp. Mar. Biol. Ecol. 250: 169-205.

Toyota K, Koizumi N, Sato F 2003 Transcriptional activation of phosphoenolpyruvate carboxylase by phosphorus deficiency in tobacco. J. Exp. Bot. 54: 961-969.

Tran-Dinh S, Beganton F, Nguyen TT, Bouet F, Herve M 1996 Mathematical model for evaluating the Krebs cycle flux with non-constant glutamate-pool size by 13C-NMR spectroscopy. Evidence for the existence of two types of Krebs cycles in cells. Eur. J. Biochem. 242: 220-227.

Truesdale MR, Toldi O, Scott P 1999 The effect of elevated concentrations of fructose 2,6-bisphosphate on carbon metabolism during deacidification in the Crassulacean acid metabolism plant Kalanchoe daigremontiana. Plant Physiol. 121: 957-964.

Trusov Y, Rookes JE, Chakravorty D, Armour D, Schenk PM, Botella JR 2006 Heterotrimeric G proteins facilitate Arabidopsis resistance to necrotrophic pathogens and are involved in jasmonate signaling. Plant Physiol. 140: 210-220.

Tsuda T, Shiga K, Ohshima K, Kawakishi S, Osawa T 1996 Inhibition of lipid peroxidation and the active oxygen radical scavenging effect of anthocyanin pigments isolated from Phaseolus vulgaris L. Biochem. Pharmacol. 52: 1033-1039.

Tsuge H, Nakano Y, Onishi H, Futamura Y, Ohashi K 1980 A novel purification and some properties of rat liver mitochondrial choline dehydrogenase. Biochim. Biophys. Acta 614: 274-284.

Tsuzi D, Maeta K, Takatsume Y, Izawa S, Inoue Y 2004 Regulation of the yeast phospholipid hydroperoxide glutathione peroxidase GPX2 by oxidative stress is mediated by Yap1 and Skn7. FEBS Lett. 565: 148-154.

Uchida A, Ooguri T, Ishida T, Ishida Y 1993 Incorporation of methionine into dimethylthiopropanoic acid in the dinoflagellate Crypthecodinium cohnii. Nippon Suisan Gakkaishi 59: 851-855.

Ueno O 2004 Environmental regulation of photosynthetic metabolism in the amphibious sedge Eleocharis baldwinii and comparisons with related species. Plant Cell Environ. 27: 627-639.

Ueno O 2001 Environmental regulation of C(3) and C(4) differentiation in the amphibious sedge Eleocharis vivipara. Plant Physiol. 127: 1524-1532.

Ueno O 1998 Induction of Kranz anatomy and C4-like biochemical characteristics in a submerged amphibious plant by abscisic acid. Plant Cell 10: 571-584.

Ueno O, Bang SW, Wada Y, Kondo A, Ishihara K, Kaneko Y, Matsuzawa Y 2003 Structural and biochemical dissection of photorespiration in hybrids differing in genome constitution between Diplotaxis tenuifolia (C3-C4)) and radish (C3). Plant Physiol. 132: 1550-1559.

Ueno O, Kawano Y, Wakayama M, Takeda T 2006 Leaf vascular systems in C(3) and C(4) grasses: a two-dimensional analysis. Ann. Bot. (Lond.) 97: 611-621.

Ueno O, Sentoku N 2006 Comparison of leaf structure and photosynthetic characteristics of C-3 and C-4 Alloteropsis semialata subspecies. Plant Cell Environ. 29: 257-268.

Ueno O, Yoshimura Y, Sentoku N 2005 Variation in the activity of some enzymes of photorespiratory metabolism in C4 grasses. Ann. Bot. (Lond.) 96: 863-869.

Van Dien SJ, Lidstrom ME 2002 Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism. Biotechnol. Bioeng. 78: 296-312.

van Gestel NC, Nesbit AD, Gordon EP, Green C, Pare PW, Thompson L, Peffley EB, Tissue DT 2005 Continuous light may induce photosynthetic downregulation in onion: consequences for growth and biomass partitioning. Physiol. Plant. 125: 235-246.

Vancanneyt G, Sonnewald U, Hofgen R, Willmitzer L 1989 Expression of a patatin-like protein in the anthers of potato and sweet pepper flowers. Plant Cell 1: 533-540.

Varet A, Hause B, Hause G, Scheel D, Lee J 2003 The Arabidopsis NHL3 gene encodes a plasma membrane protein and its overexpression correlates with increased resistance to Pseudomonas syringae pv. tomato DC3000. Plant Physiol. 132: 2023-2033.

Vogan PJ, Frohlich MW, Sage RF 2007 The functional significance of C(3)-C(4) intermediate traits in Heliotropium L. (Boraginaceae): gas exchange perspectives. Plant Cell Environ. 30: 1337-1345.

Vogg G, Fischer S, Leide J, Emmanuel E, Jetter R, Levy AA, Riederer M 2004 Tomato fruit cuticular waxes and their effects on transpiration barrier properties: functional characterization of a mutant deficient in a very-long-chain fatty acid beta-ketoacyl-CoA synthase. J. Exp. Bot. 55: 1401-1410.

Vogt T, Zimmermann E, Grimm R, Meyer M, Strack D 1997 Are the characteristics of betanidin glucosyltransferases from cell-suspension cultures of Dorotheanthus bellidiformis indicative of their phylogenetic relationship with flavonoid glucosyltransferases? Planta 203: 349-361.

Voll L, Hausler RE, Hecker R, Weber A, Weissenbock G, Fiene G, Waffenschmidt S, Flugge UI 2003 The phenotype of the Arabidopsis cue1 mutant is not simply caused by a general restriction of the shikimate pathway. Plant J. 36: 301-317.

von Caemmerer S 1992 Carbon isotope discrimination in C3-C4 intermediates. Plant Cell Environ. 15: 1063-1072.

von Caemmerer S 2003 C-4 photosynthesis in a single C-3 cell is theoretically inefficient but may ameliorate internal CO2 diffusion limitations of C-3 leaves. Plant Cell Environ. 26: 1191-1197.

von Caemmerer S, Ghannoum O, Conroy JP, Clark H, Newton PCD 2001 Photosynthetic responses of temperate species to free air CO2 enrichment (FACE) in a grazed New Zealand pasture. Aust. J. Plant Physiol. 28: 439-450.

von Caemmerer S, Hendrickson L, Quinn V, Vella N, Millgate AG, Furbank RT 2005 Reductions of Rubisco activase by antisense RNA in the C4 plant Flaveria bidentis reduces Rubisco carbamylation and leaf photosynthesis. Plant Physiol. 137: 747-755.

Vroemen CW, Mordhorst AP, Albrecht C, Kwaaitaal MA, De Vries SC 2003 The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis. Plant Cell 15: 1563-1577.

Wakayama M, Ohnishi J, Ueno O 2006 Structure and enzyme expression in photosynthetic organs of the atypical C4 grass Arundinella hirta. Planta 223: 1243-1255.

Walker RP, Acheson RM, Tecsi LI, Leegood RC 1997 Phosphoenolpyruvate carboxykinase in C4 plants: its role and regulation. Aust. J. Plant Physiol. 24: 459-468.

Wand SJE, Midgley GF, Stock WD 2001 Growth responses to elevated CO2 in NADP-ME, NAD-ME and PCK-C4 grasses and a C3 grass from South Africa. Aust. J. Plant Physiol. 28: 13-25.

Wandrey M, Trevaskis B, Brewin N, Udvardi MK 2004 Molecular and cell biology of a family of voltage-dependent anion channel porins in Lotus japonicus. Plant Physiol. 134: 182-193.

Wang GA, Han JM, Zhou LP, Xiong XG, Wu Z 2005 Carbon isotope ratios of plants and occurrences of C-4 species under different soil moisture regimes in arid region of Northwest China. Physiol. Plant. 125: 74-81.

Wang JL, Long JJ, Hotchkiss T, Berry JO 1993 C4 photosynthetic gene expression in light- and dark-grown amaranth cotyledons. Plant Physiol. 102: 1085-1093.

Wang YH, Chollet R 1993 In vitro phosphorylation of purified tobacco leaf phosphoenolpyruvate carboxylase. FEBS Lett. 328: 215-218.

Wang YS, Harding SA, Tsai CJ 2004 Expression of a glycine decarboxylase complex H-protein in non-photosynthetic tissues of Populus tremuloides. Biochim. Biophys. Acta 1676: 266-272.

Warren CR, Adams MA 2006 Internal conductance does not scale with photosynthetic capacity: implications for carbon isotope discrimination and the economics of water and nitrogen use in photosynthesis. Plant Cell Environ. 29: 192-201.

Wen TJ, Hochholdinger F, Sauer M, Bruce W, Schnable PS 2005 The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiol. 138: 1637-1643.

Wendisch VF, de Graaf AA, Sahm H 1997 Accurate determination of C-13 enrichments in nonprotonated carbon atoms of isotopically enriched amino acids by H-1 nuclear magnetic resonance. Anal. Biochem. 245: 196-202.

Westhoff P, Gowik U 2004 Evolution of C4 phosphoenolpyruvate carboxylase. Genes and proteins: a case study with the genus Flaveria. Ann. Bot. (Lond.) 93: 13-23.

Weston DJ, Bauerle WL 2007 Inhibition and acclimation of C(3) photosynthesis to moderate heat: a perspective from thermally contrasting genotypes of Acer rubrum (red maple). Tree Physiol. 27: 1083-1092.

Willekens H, Chamnongpol S, Davey M, Schraudner M, Langebartels C, Van Montagu M, Inze D, Van Camp W 1997 Catalase is a sink for H2O2 and is indispensable for stress defence in C3 plants. EMBO J. 16: 4806-4816.

Windhovel A, Hein I, Dabrowa R, Stockhaus J 2001 Characterization of a novel class of plant homeodomain proteins that bind to the C4 phosphoenolpyruvate carboxylase gene of Flaveria trinervia. Plant Mol. Biol. 45: 201-214.

Winter K, Holtum JA 2002 How closely do the delta13C values of Crassulacean acid metabolism plants reflect the proportion of CO(2) fixed during day and night? Plant Physiol. 129: 1843-1851.

Winter K, Holtum JA 2007 Environment or development? Life-time net CO2 exchange and control of the expression of Crassulacean Acid Metabolism in Mesembryanthemum crystallinum. Plant Physiol. 143: 98-107.

Winter K, Holtum JA 2005 The effects of salinity, Crassulacean acid metabolism and plant age on the carbon isotope composition of Mesembryanthemum crystallinum L., a halophytic C3-CAM species. Planta 222: 201-209.

Wittmann C, Heinzle E 2002 Genealogy profiling through strain improvement by using metabolic network analysis: metabolic flux genealogy of several generations of lysine-producing Corynebacteria. Appl. Environ. Microbiol. 68: 5843-59.

Wohlfahrt G, Bahn M, Cernusca A 1999 The use of the ratio between the photosynthesis parameters p(ml) and v(cmax) for scaling up photosynthesis of C(3) plants from leaves to canopies: a critical examination of different modelling approaches. J. Theor. Biol. 200: 163-181.

Wood JM, Zadworny D 1980 Amplification of the put genes and identification of the put gene products in Escherichia coli K12. Can. J. Biochem. 58: 787-796.

Wyka TP, Bohn A, Duarte HM, Kaiser F, Luttge UE 2004 Perturbations of malate accumulation and the endogenous rhythms of gas exchange in the Crassulacean acid metabolism plant Kalanchoe daigremontiana: testing the tonoplast-as-oscillator model. Planta 219: 705-713.

Wyka TP, Luttge UE 2003 Contribution of C3 carboxylation to the circadian rhythm of carbon dioxide uptake in a Crassulacean acid metabolism plant Kalanchoe daigremontiana. J. Exp. Bot. 54: 1471-1479.

Xu YC, Leung SW, Yeung DK, Hu LH, Chen GH, Che CM, Man RY 2007 Structure-activity relationships of flavonoids for vascular relaxation in porcine coronary artery. Phytochemistry 68: 1179-1188.

Yaeno T, Matsuda O, Iba K 2004 Role of chloroplast trienoic fatty acids in plant disease defense responses. Plant J. 40: 931-941.

Yagi T, Ogata M 1996 Catalytic properties of adenylylsulfate reductase from Desulfovibrio vulgaris Miyazaki. Biochimie 78: 838-846.

Yang SJ, Cho EH, Choi MM, Lee HJ, Huh JW, Choi SY, Cho SW 2005 Critical role of the cysteine 323 residue in the catalytic activity of human glutamate dehydrogenase isozymes. Mol. Cells 19: 97-103.

Yang XL, Schimmel P, Ewalt KL 2004 Relationship of two human tRNA synthetases used in cell signaling. Trends Biochem. Sci. 29: 250-256.

Yao H, Guo L, Fu Y, Borsuk LA, Wen TJ, Skibbe DS, Cui X, Scheffler BE, Cao J, Emrich SJ, Ashlock DA, Schnable PS 2005 Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Mol. Biol. 57: 445-460.

Yen SK, Chung MC, Chen PC, Yen HE 2001 Environmental and developmental regulation of the wound-induced cell wall protein WI12 in the halophyte ice plant. Plant Physiol. 127: 517-528.

Yen TY, Villa JA, DeWitt JG 1999 Analysis of phytochelatin-cadmium complexes from plant tissue culture using nano-electrospray ionization tandem mass spectrometry and capillary liquid chromato