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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

Analytical Methods

Gas Chromatography-Mass Spectrometry (GC-MS) of HFBI Amino Acid Derivatives

Figure 1 shows a total ion chromatogram of a standard mixture of amino acids (each at 2.5 nmol/uL) derivatized as HFBI derivatives and analyzed by electron ionization (EI) GC-MS using a Finnigan GCQ tandem mass spectrometer equipped with a db1 capillary column (oven temperature program = 100oC (4 min) to 280oC at 12oC per min), scanning over the mass range 210 to 370 amu; a range which detects most of the major electron ionization fragment ions of HFBI-amino acid derivatives.

Structures of various HFBI-amino acid derivatives (listed in order of their retention times) and their chemical ionization (CI) mass spectra (mass range scanned = 200 - 600 amu) and/or electron ionization (EI) mass spectra (mass range scanned = 210 - 370 amu) can be accessed from the following page:

HFBI Amino Acid Derivatives

This includes an interactive JavaScript application for calculating the molecular weights, expected molecular ion M+H+, and expected fragment ions of the HFBI-amino acid derivatives. This application will function with both Internet Explorer and Netscape browsers.

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www www.hort.purdue.edu
David Rhodes and Barb Wood
Department of Horticulture & Landscape Architecture
Horticulture Building
625 Agriculture Mall Drive
Purdue University
West Lafayette, IN 47907-2010
Last Update: 03/31/08